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At least 991 records · Page 55Linked to original sources
USGS2005

A model for simulation of surface-water integrated flow and transport in two dimensions: user's guide for application to coastal wetlands

The computation of hydrodynamic flow in two dimensions is implemented in the Surface-Water Integrated Flow and Transport in Two-Dimensions (SWIFT2D) model using a numerical code that also includes computation of reactive constituent transport, density variation effects, drying and wetting of periodically inundated areas, and hydraulic structures. The model can be utilized in a variety of settings where velocity and concentration gradients can be assumed to have minimal vertical variations, and the representation of flow in two horizontal dimensions is sufficient. The finite-difference forms of the equations of mass continuity and momentum are solved in two dimensions by the use of a staggered timestep solution solved with an efficient alternating-direction implicit solution. The finite-difference forms of the constituent transport equations can be solved in conjunction with the flow equations. If salt transport is simulated, an equation of state relates the density terms in the momentum equation to salinity. The traditional formulation of SWIFT2D has been applied to numerous estuaries, bays, and harbors throughout the world. Modifications have been made to expand SWIFT2D for applicability to shallow coastal wetlands. These modifications include the representation of spatially and temporally varying rainfall and evapotranspiration, wind sheltering owing to effects of emergent vegetation, and changes in frictional resistance with depth. These modifications expand the versatility of the code?s applications to include open freshwater or saltwater conditions along coasts and within embayments and estuaries as well as associated fresh, brackish, and hypersaline wetlands and marshes linked to such water bodies. Inclusion of precipitation and evapotranspiration processes also permits long-term simulations.

Open-File Report↗
USGS2005

New York Water-Use Program and data, 2000

The U.S. Geological Survey (USGS) has been publishing estimates of water use every five years since 1950 in the Estimated use of water in the United States circular series. In 1978, the Congress expanded the water-use activities of the USGS by establishing the National Water-Use Information Program (NWUIP). The water-use program in New York is part of the NWUIP and is based on a cooperative agreement between the USGS and the New York State Department of Environmental Conservation (NYSDEC). Together, the NYSDEC and USGS collect, compile, and store water-use data to provide a data base that is useful for water-resources management. The New York State Department of Health (NYSDOH) collects a wide variety of data elements relating to public-water supplies such as the name and location of the suppliers and the amount of water withdrawn. This valuable information is provided to the water-use program. The information summarized in this fact sheet has been published in U.S. Geological Survey Circular 1268, Estimated use of water in the United States in 2000 which can be accessed at http://water.usgs.gov/watuse . The 2000 data (by county) as well as previous years data can also be found at that site. Water withdrawal refers to the removal of water from the ground or its diversion from a surface-water source for use. Withdrawals of fresh and saline surface water and fresh ground water during 2000 were included in this study. The categories considered in this data compilation are public-water supply; deliveries to domestic from public-water suppliers and domestic self-supplied; industrial; thermoelectric-power generation; and irrigation. Saline withdrawals were included for the categories of industrial, mining, and thermoelectric-power generation. Saline water is a significant percentage of total withdrawals for the category of thermoelectric-power generation. The categories of withdrawal for which data were compiled for the 2000 calendar year do not include some of the categories that were addressed in 1995 and published in USGS Circular 1200, Estimated use of water in the United States in 1995. For the 2000 compilation, emphasis was placed on ensuring the quality of data that were collected, rather than attempting to address all categories and data elements on a national scale. Categories that were included in 1995 but not in 2000 are commercial; livestock; mining; the non-withdrawal categories of hydroelectric-power generation, wastewater treatment and public-water supply deliveries to commercial and industrial users. Any comparison made between 1995 and 2000 data need to be made with these category differences in mind. In 1995, the categories of commercial, livestock, and mining were about 280 Mgal/d (million gallons per day) of freshwater and 2.7 percent of total freshwater withdrawals. In addition, the report, New York water-use program and data, 1995, U. S. Geological Survey Fact Sheet 014-02, concentrated on freshwater and did not include saline-surface water withdrawals in the figures. Any comparison between the 1995 and 2000 figures need to be made with this in mind. In 2000, about 12,100 Mgal/d (million gallons per day) of fresh surface and ground water and saline surface water were withdrawn from New York's rivers, streams, lakes, estuaries, bays, and aquifers for the categories addressed. Freshwater withdrawals comprised about 7,080 Mgal/d of this total. With a total population of 18,980,000 people in New York State, the total freshwater withdrawals represent an average of more than 370 gal/d (gallons per day) per capita. The amounts of fresh surface water, ground water, saline surface water, and total amounts of water withdrawn by categories of water use in New York during 2000 are shown. Many of New York's large population centers have developed along major rivers and lakes; as a result, more than 87 percent of the freshwater withdrawals in 2000 were from surface-water bodies (6,190 Mgal/d). More than 65 percent of fresh surface-water withdrawals were for thermoelectric-power generation, and about 32 percent were by public-water suppliers. Of the 890 Mgal/d of ground water withdrawn in 2000 statewide, 65 percent was withdrawn by public-water suppliers, and about 16 percent each by industrial and domestic users. More freshwater is withdrawn by thermoelectric plants than for any other water-use category. Of the freshwater withdrawals within New York, about 57 percent were made by fossil-fuel and nuclear powerplants; about 36 percent were for public-water supply; about 4.2 percent was by industrial users, 2.0 percent by domestic users, and about 0.5 percent was for irrigation. Total withdrawals, total surface-water and fresh ground-water withdrawals, in New York are plotted, by county. The categories of public-water supply and thermoelectric power account for the withdrawals that exceed 100 Mgal/d per county. The counties that have public-water supply withdrawals that exceed 100 Mgal/d are: Delaware (453 Mgal/d), Ulster, Nassau, Erie, Sullivan, Westchester, Suffolk, Putnam, and Schoharie (115 Mgal/d). These large withdrawals are from surface water except in Nassau and Suffolk Counties on Long Island, where groundwater is the sole source of freshwater. Delaware, Putnam, Schoharie, Sullivan, Ulster, and Westchester Counties, in the southeastern part of the State, provide surface water to the aqueducts that supply drinking water to New York City. In 2000, the average amount of water delivered to New York City from these counties averaged 1,260 Mgal/d. Erie County, in western New York, had withdrawals totaling 176 Mgal/d of fresh surface water for public-water supply. More freshwater and more total water is withdrawn for the generation of thermoelectric power than for any other water-use category. All of the withdrawals are of surface water. Seven counties have total thermoelectric withdrawals that exceed 500 Mgal/d: Queens (1,690 Mgal/d), Westchester, Oswego, Suffolk, Erie, Orange, and Rockland (560 Mgal/d). The counties of Oswego, Erie, and Orange withdrew only fresh surface water for thermoelectric plants. Their sources of water were Lake Ontario (Oswego County), Niagara River (Erie County), and the Hudson River (Orange County). Queens, Westchester, Suffolk, and Rockland withdraw only saline surface water for the production of thermoelectric power. The sources of saline surface water for the thermoelectric plants in the counties of Queens, Westchester, Suffolk, and Rockland are the estuaries of the Hudson River and East River and bays of the Atlantic Ocean (Long Island Sound and the eastern shore of Jamaica Bay). New York ranked eighth in the United States in 2000 in total withdrawals (fresh and saline water); the States that exceeded New York in total withdrawals are those that have large populations (such as California and Texas) and (or) use large quantities of water for irrigation (such as Florida and Idaho). Of the categories considered for the 2000 compilation, New York did not have nationally significant withdrawals for either irrigation or industrial water use. New York ranked third after California and Texas in withdrawals of freshwater for public supply, in the withdrawal of fresh surface water for public-water supply, in total population, and in number of people served by public-water supplies. New York ranked sixth in total withdrawals for the generation of thermoelectric power and total surface-water withdrawals. Finally, New York ranked fourth in withdrawals of ground water for public supply.

Open-File Report↗
USGS2010

Investigation of submarine groundwater discharge along the tidal reach of the Caloosahatchee River, southwest Florida

The tidal reach of the Caloosahatchee River is an estuarine habitat that supports a diverse assemblage of biota including aquatic vegetation, shellfish, and finfish. The system has been highly modified by anthropogenic activity over the last 150 years (South Florida Water Management District (SFWMD), 2009). For example, the river was channelized and connected to Lake Okeechobee in 1881 (via canal C-43). Subsequently, three control structures (spillway and locks) were installed for flood protection (S-77 and S-78 in the 1930s) and for saltwater-intrusion prevention (S-79, W.P. Franklin Lock and Dam in 1966). The emplacement of these structures and their impact to natural water flow have been blamed for water-quality problems downstream within the estuary (Flaig and Capece, 1998; SFWMD, 2009). Doering and Chamberlain (1999) found that the operation of these control structures caused large and often rapid variations in salinity during various times of the year. Variable salinities could have deleterious impacts on the health of organisms in the Caloosahatchee River estuary. Flow restriction along the Caloosahatchee has also been linked to surface-water eutrophication problems (Doering and Chamberlain, 1999; SFWMD, 2009) and bottom-sediment contamination (Fernandez and others, 1999). Sources of nutrients (nitrogen and phosphorous) that cause eutrophication are primarily from residential sources and agriculture, though wastewater-treatment-plant discharges can also play a major role (SFWMD, 2009). The pathway for many of these nutrients is by land runoff and direct discharge from stormwater drains. An often overlooked source of nutrients and other chemical constituents is from submarine groundwater discharge (SGD). SGD can be either a diffuse or point source (for example, submarine springs) of nutrients and other chemical constituents to coastal waters (Valiela and others, 1990; Swarzenski and others, 2001; 2006; 2007; 2008). SGD can be composed of either fresh or marine water or various mixed ratios of fresh and marine water (Martin and others, 2007). In coastal areas where water-table elevations (hydraulic gradients) are steep, such as in Hood Canal, Washington (Swarzenski and others, 2007; Simonds and others, 2008), groundwater entering the coastal marine waters can be fresh (~1-4 parts per thousand, ppt). SGD in coastal locations that have low relief (low hydraulic gradients) such as the study area or other locations in Florida are typically driven by tidal pumping (Reich and others, 2002; 2008; Swarzenski and others, 2008), and water advecting into surface water is composed of recirculated marine water mixed with either fresh or brackish groundwaters. The importance of SGD in the delivery of nutrients and trace elements to coastal environments has been shown to be both beneficial and deleterious to ecosystem health (Valiela and others, 1990). The logical step in studying SGD is to map areas where SGD occurs. Methods such as continuous surface-water radon-222 ( 222 Rn) mapping and electrical resistivity (continuous resistivity profiles, CRP) have been developed and used to identify potential SGD sites (Dulaiova and others, 2005; Swarzenski and others 2004; 2006; 2007; 2008; Reich and others, 2008). CRP data record subsurface, bulk-resistivity measurements to depths up to 25 meters (m). The bulk resistivity can be representative of changes in porewater salinity or in lithology (Reich and others, 2008; Swarzenski and others, 2008). Radon-222 (half-life = 3.28 days) is a natural tracer of groundwater, because sediments and rocks, containing uranium-bearing materials such as limestone and phosphatic material, continually produce 222 Rn. Rn-222 (also referred to simply as radon) is an ideal tracer, because there is a constant source. Since radon is a gas, 222 Rn does not build up in the surface water but rather evades directly to the atmosphere (Burnett and Dulaiova, 2003; Burnett and others, 2003; Dulaiova and Burnett, 2006).

Florida↗
USGS2010

Nitrogen Loads in Groundwater Entering Back Bays and Ocean from Fire Island National Seashore, Long Island, New York

Fire Island is a barrier island that lies south of central Long Island, N.Y. It is about 60 km (37 mi) long and 0.5 km (1/4 mi) wide and is bounded by the Great South Bay, Narrow Bay, and Moriches Bay estuaries to the north; by the Atlantic Ocean to the south; by Fire Island Inlet to the west; and by Moriches Inlet to the east (fig. 1). Fire Island National Seashore (FIIS) encompasses a 42-km (26-mi) length of Fire Island that is bordered by Robert Moses State Park to the west and Smith Point County Park to the east (fig. 2). Interspersed throughout FIIS are 17 residential beach communities that together contain about 4,100 homes. The barrier island's summer population increases 50-fold through the arrival of summer residents and vacationers. The National Park Service (NPS) has established several facilities on the island to accommodate visitors to FIIS. About 2.2 million people visit at least one of the 17 communities and (or) Smith Point County Park, the waterways surrounding Fire Island, or a FIIS facility annually (National Park Service, 2007). Combined visitation on a peak-season weekend day can be as high as 100,000 (National Park Service, 2002). Most homes and businesses in the 17 barrier-island communities discharge untreated wastewater directly to the shallow (water-table) aquifer through private septic systems and cesspools; the NPS facilities discharge wastewater to this aquifer through leach fields and cesspools. (The community of Ocean Beach (fig. 2) has a treatment plant that discharges to tidewater.) Contaminants in sewage entering the shallow groundwater move through the flow system and are ultimately discharged to adjacent marine surface waters, where they can pose a threat to coastal habitats. A contaminant of major concern is nitrogen, which is derived from fertilizers and human waste. The continuous inflow of nitrogen to surface-water bodies can lead to increased production of phytoplankton and macroalgae, which in turn can cause oxygen depletion, decreases in size of estuarine fish and shellfish communities, and loss of submerged seagrass habitat through light limitation (Valiela and others, 1992). The FIIS boundary extends roughly 1.2 km (0.8 mi) into the back-barrier estuaries of Great South Bay, Narrow Bay, and Moriches Bay (fig. 1). Within this estuarine zone are extensive areas of seagrass, shellfish, and finfish habitat, as well as intense recreational activity (Bokuniewicz and others, 1993). Management strategies for protection of these habitats require data on (1) concentrations and movement of nutrients and other human-derived contaminants that enter the groundwater system from on-site septic systems, and (2) aquifer characteristics and groundwater flow patterns. These data can then be used in three-dimensional flow models of the shallow aquifer system to predict the rates of groundwater discharge to the marine surface waters that bound Fire Island and the concentrations of nitrogen entering these water bodies from the aquifer's discharge zones. In 2004, the U.S. Geological Survey (USGS), in cooperation with the NPS, began a 3-year investigation to (1) measure groundwater levels within four local study areas at FIIS, (2) collect groundwater samples from these areas for nutrient (nitrogen) analysis, (3) develop a three-dimensional model of the hydrologic system and adjacent saltwater bodies for groundwater-flow delineation and particle tracking, and (4) apply the results of groundwater-discharge simulations to calculate the annual nitrogen loads in these discharges, particularly those entering Great South Bay, which together with the other back bays receives an estimated 80 percent of the total groundwater discharge from Fire Island. The four areas on which the investigation focused were the communities of Kismet and Robbins Rest, the NPS Visitor Center at Watch Hill, and the undeveloped Otis Pike Fire Island High Dune Wilderness (shown in panels A, B, C, and D in fig. 2); these were

Open-File Report↗
USGS2010

Selenium concentrations and stable isotopic compositions of carbon and nitrogen in the benthic clam Corbula amurensis from northern San Francisco Bay, California: May 1995–February 2010

The clam-based food webs of San Francisco Bay, California efficiently bioaccumlate selenium and thus provide pathways for exposure to predators important to the estuary. This study documents changes in monthly selenium concentrations for the clam Corbula amurensis , a keystone species of the estuary, at five locations in northern San Francisco Bay from 1995 through 2010. Samples were collected from designated U.S. Geological Survey stations and prepared and analyzed by U.S. Geological Survey methods. Stable isotopes of carbon and nitrogen in soft tissues of clams also were measured as an indicator of sources of selenium for the clams. These monitoring data indicate that clam selenium concentrations ranged from a low of 2 to a high of 22 micrograms per gram dry weight with strong spatial and seasonal variation over the period of study.

California↗
USGS2011

Combined multibeam and LIDAR bathymetry data from eastern Long Island Sound and westernmost Block Island Sound-A regional perspective

Detailed bathymetric maps of the sea floor in Long Island Sound are of great interest to the Connecticut and New York research and management communities because of this estuary's ecological, recreational, and commercial importance. The completed, geologically interpreted digital terrain models (DTMs), ranging in area from 12 to 293 square kilometers, provide important benthic environmental information, yet many applications require a geographically broader perspective. For example, individual surveys are of limited use for the planning and construction of cross-sound infrastructure, such as cables and pipelines, or for the testing of regional circulation models. To address this need, we integrated 12 multibeam and 2 LIDAR (Light Detection and Ranging) contiguous bathymetric DTMs, produced by the National Oceanic and Atmospheric Administration during charting operations, into one dataset that covers much of eastern Long Island Sound and extends into westernmost Block Island Sound. The new dataset is adjusted to mean lower low water, is gridded to 4-meter resolution, and is provided in UTM Zone 18 NAD83 and geographic WGS84 projections. This resolution is adequate for sea floor-feature and process interpretation but is small enough to be queried and manipulated with standard Geographic Information System programs and to allow for future growth. Natural features visible in the grid include exposed bedrock outcrops, boulder lag deposits of submerged moraines, sand-wave fields, and scour depressions that reflect the strength of the oscillating and asymmetric tidal currents. Bedform asymmetry allows interpretations of net sediment transport. Anthropogenic artifacts visible in the bathymetric data include a dredged channel, shipwrecks, dredge spoils, mooring anchors, prop-scour depressions, buried cables, and bridge footings. Together the merged data reveal a larger, more continuous perspective of bathymetric topography than previously available, providing a fundamental framework for research and resource management activities in this major east-coast estuary.

Open-File Report↗
USGS2013

Internal nutrient sources and nutrient distributions in Alviso Pond A3W, California

Within the Alviso Salt Pond complex, California, currently undergoing avian-habitat restoration, pore-water profilers (U.S. Patent 8,051,727 B1) were deployed in triplicate at two contrasting sites in Pond A3W (“Inlet”, near the inflow, and “Deep”, near the middle of the pond; figs. 1 and 2; table 1, note that tables in this report are provided online only as a .xlsx workbook at http://pubs.usgs.gov/of/2013/1128/). Deployments were conducted in 2010 and 2012 during the summer algal-growth season. Specifically, three deployments, each about 7 weeks apart, were undertaken each summer. This study provides the first measurements of the diffusive flux of nutrients across the interface between the pond bed and water column (that is, benthic nutrient flux). These nutrient fluxes are crucial to pond restoration efforts because they typically represent a major (if not the greatest) source of nutrients to the water column in both ponds and other lentic systems. For soluble reactive phosphorus (SRP, the most biologically available form in solution), benthic flux was positive both years (that is, out of the sediment into the water column; table 2), with the exception of the August 2010 deployment, which exhibited nearly negligible but negative flux. Overall, the average SRP flux was significantly greater at Deep (23.9 ± 8.6 micromoles per square meter per hour (µmol-m -2 -h -1 ); all errors shown reflect the 95-percent confidence interval) than Inlet (12.6 ± 4.9 µmol-m -2 -h -1 ). There was much greater temporal variability in SRP flux in the pond than reported for the lower estuary (Topping and others, 2001). For dissolved ammonia, benthic flux was consistently positive on all six sampling trips, and similar to SRP, the fluxes at Deep (258 ± 49 µmol-m -2 -h -1 ) were consistently greater than those at Inlet (28 ± 11 µmol-m -2 -h -1 ). Dissolved ammonia fluxes reported for South San Francisco Bay by Topping and others (2001) fall in between these values. Once again, greater variability for benthic fluxes determined in the pond was observed relative to adjacent South San Francisco Bay. With the near absence of any measurable concentration gradient, dissolved-nitrate fluxes were consistently negligible in the pond. Silica fluxes are often used to represent sediment diagenetic processes that biogeochemically cycle silica (an important algal macronutrient) between biogenic and inorganic phases (Fanning and Pilson, 1974; Emerson and others, 1984). For South San Francisco Bay, those values are consistently positive from core-incubation experiments. In Pond A3W, dissolved-silica fluxes averaged 49 ± 25 µmol-m -2 -h -1 at Inlet and were much higher at Deep (482 ± 370 µmol-m -2 -h -1 ), similar to the spatially variability observed for SRP and dissolved ammonia. An elevated silica flux can stimulate diatom production and subsequent eutrophication effects. Variability in these silica fluxes is consistent with season patterns in pond primary productivity. On the basis of comparisons of dissolved-oxygen flux measurements by profilers and core incubations, it appears that diffusive flux estimates for the sediment in this pond, as one might expected in such benthically productive environments, result in a significant underestimation of true sediment oxygen demand. Therefore, a core incubation experiment was conducted to better quantify the demand. To complement these benthic-flux studies, a diurnal study of nutrient advective flux into and out of the pond was measured during neap and spring tides to provide comparative estimates for allochthonous solute transport (Garret, 2012). Using the two different tides as the probable upper and lower boundaries, we can estimate a range of probable values throughout the year. After converting this advective flux into kg/yr, we can compare it directly to benthic flux estimates for the pond extrapolated over the 2.27 square kilometer (km 2 ) pond surface. Benthic flux of nitrogen species, averaged over all sites and dates, was about 80,000 kilograms per year (kg/yr), well above the adjective flux range of -50 to 1,500 kg/yr. By contrast, the average benthic flux of orthophosphate was about 12,000 kg/yr, well below the advective flux range of 21,500 to 30,000 kg/yr. Initial benthic flux estimates were also made for trace metals, including copper, nickel, iron, and manganese. These analyses indicated that the two sites, Inlet and Deep, have different pore-water profiles, with Inlet exhibiting much higher benthic flux estimates for nickel, iron, and manganese. These initial benthic-flux values reported for macronutrients are particularly impressive in magnitude when one considers that diffusive flux of dissolved solutes based on pore-water profiles provides a conservative determination that may be enhanced by other biogeochemical processes. These enhancement processes (Boudreau and Jorgensen, 2001) include bioturbation, bioirrigation, wind resuspension, and potential groundwater inflows, some of which are captured in core-incubation experiments (Kuwabara and others, 2009). Hence, the values reported herein represent lower bounds to indicate the potential importance of such internal solute sources. The elevated diffusive fluxes for nutrients in the pond relative to the adjacent estuary indicate that vertical nutrient transport between the pond bed and water column is consistently an important (and at times the most important) source of nutrients that stimulate phytoplankton growth in the water column. One might therefore reasonably hypothesize that this benthic transport of biologically reactive solutes (both nutrients and toxicants) represents the most important step at the base of the food web for trophic transfer.

California↗
USGS2015

Air- and stream-water-temperature trends in the Chesapeake Bay region, 1960-2014

Water temperature is a basic, but important, measure of the condition of all aquatic environments, including the flowing waters in the streams that drain our landscape and the receiving waters of those streams. Climatic conditions have a strong influence on water temperature, which is therefore naturally variable both in time and across the landscape. Changes to natural water-temperature regimes, however, can result in a myriad of effects on aquatic organisms, water quality, circulation patterns, recreation, industry, and utility operations. For example, most species of fish, insects, and other organisms, as well as aquatic vegetation, are highly dependent on water temperature. Warming waters can result in shifts in floral and faunal species distributions, including invasive species and pathogens previously unable to inhabit the once cooler streams. Many chemical processes are temperature dependent, with reactions occurring faster in warmer conditions, leading to degraded water quality as contaminants are released into waterways at greater rates. Circulation patterns in receiving waters, such as bays and estuaries, can change as a result of warmer inflows from streams, thereby affecting organisms in those receiving waters. Changes in abundance of some aquatic species and (or) degradation of water quality can reduce the recreational value of water bodies as waters are perceived as less desirable for water-related activities or as sportfish become less available for anglers. Finally, increasing water temperatures can affect industry and utilities as the thermal capacity is reduced, making the water less effective for cooling purposes. Chesapeake Bay is the largest estuary in the United States. Eutrophication, the enrichment of a water body with excess nutrients, has plagued the bay for decades and has led to extensive restoration efforts throughout the bay watershed. The warming of stream water can exacerbate eutrophication through increased release of nutrients from in-stream sediments, so understanding changes in stream-water temperature throughout the bay watershed is critical to resource managers seeking to restore the bay ecosystem. The U.S. Environmental Protection Agency (EPA) uses indicators that “represent the state or trend of certain environmental or societal conditions … to track and better understand the effects of changes in the Earth’s climate” (U.S. Environmental Protection Agency, 2014). Updates to these indicators are published biennially by the EPA. The U.S. Geological Survey (USGS), in cooperation with the EPA, has completed analyses of air- and stream-water-temperature trends in the Chesapeake Bay region to be included as an indicator in a future release of the EPA report.

Delaware, Maryland, New York, Pennsylvania, Virgin↗
USGS2015

Benthic response to water quality and biotic pressures in lower south San Francisco Bay, Alviso Slough, and Coyote Creek

Benthic invertebrate communities are monitored because the composition of those communities can effect and be affected by the water quality of an aquatic system. Benthic communities use and sometimes regulate the cycling of essential elements (for example, carbon). Benthic invertebrate taxa may also indicate acutely and chronically stressful environments because they are mostly sessile, accumulate contaminants, and sometimes respond dramatically to oligotrophic as well as eutrophic conditions. Benthic communities can in turn affect water quality by grazing pelagic food resources and increasing the rate of nutrient regeneration through feeding and bioturbating the sediment. South San Francisco Bay is a system dependent on phytoplankton as the base to the food web. Despite abundant nutrients, south San Francisco Bay has had limited phytoplankton production in the last several decades owning to poor light conditions and high grazing losses from the water column by benthic invertebrates. The south San Francisco Bay achieves a balance of biogeochemical conditions in most springs to accommodate a short phytoplankton bloom. This balance has maintained the phytoplankton in south San Francisco Bay at low biomass levels relative to other high-nutrient urban estuaries. The role that benthic invertebrates play in this balance, in these episodic spring events, and in other seasons within the estuary remains of great interest to water-quality and biological resource managers. Our primary objective in this study is to quantify current (2014) benthic-community structure and function in the south San Francisco Bay sloughs and to compare those communities temporally over decadal time scales with a unique long-term dataset. The study area (fig. 1) is inclusive of the area south of the Dumbarton Bridge (DB) including Alviso and Guadalupe Sloughs and Coyote Creek. The following are results highlighted in this report: The benthic communities of Coyote Creek and Alviso, Guadalupe, and Artesian Sloughs were dominated by different organisms but similar functional groups in March, June, and September 2014. Coyote Creek stations (D3 and CC1) had a similar increase in Potamocorbula amurensis biomass followed by a decline in 2014, as was observed annually in the south San Francisco Bay since 1999. The lack of grazing pressure owing to the observed declines in these taxa in 2014 may allow the sloughs to become sources of phytoplankton in spring. Bivalve biomass is elevated in summer and fall relative to the spring and winter except in Artesian Slough, where bivalves did not establish a signifcant presence. Presence of certain species contributes to the prey value of the community to predators. Potamocorbula amurensis is a shallow-burrowing bivalve and hence is easy prey for bottom-feeding predators. In contrast, Macoma petalum is a deposit feeder and can burrow deeper into the substrate than Potamocorbula amurensis , making it harder to be preyed upon. The quantitative importance of such predator-prey relationships on phytoplankton dynamics requires further investigation. There were also more amphipods in the sloughs in March 2014; this group is another potential contributor to the benthic-pelagic biomass balance. There is no observed reason for Artesian Slough to have low bivalve biomass values and high amphipod abundances.

California↗
USGS2016

Effects of climate change on tidal marshes along a latitudinal gradient in California

Public Summary The coastal region of California supports a wealth of ecosystem services including habitat provision for wildlife and fisheries. Tidal marshes, mudflats, and shallow bays within coastal estuaries link marine, freshwater and terrestrial habitats, and provide economic and recreational benefits to local communities. Climate change effects such as sea-level rise (SLR) are altering these habitats, but we know little about how these areas will change over the next 50–100 years. Our study examined the projected effects of three recent SLR scenarios produced for the West Coast of North America on tidal marshes in California. We compiled physical and biological data, including coastal topography, tidal inundation, plant composition, and sediment accretion to project how SLR may alter these ecosystems in the future. The goal of our research was to provide results that support coastal management and conservation efforts across California. Under a low SLR scenario, all study sites remained vegetated tidal wetlands, with most sites showing little elevation and vegetation change relative to sea level. At most sites, mid SLR projections led to increases in low marsh habitat at the expense of middle and high marsh habitat. Marshes at Morro Bay and Tijuana River Estuary were the most vulnerable to mid SLR with many areas becoming intertidal mudflat. Under a high SLR scenario, most sites were projected to lose vegetated habitat, eventually converting to intertidal mudflats. Our results suggest that California marshes are vulnerable to major habitat shifts under mid or high rates of SLR, especially in the latter part of the century. Loss of vegetated tidal marshes in California due to SLR is expected to impact ecosystem services that are dependent on coastal wetlands such as wildlife habitat, carbon sequestration, improved water quality, and coastal protection from storms.

California↗
USGS2017

Evaluation of Caspian tern ( Hydroprogne caspia ) and snowy plover ( Charadrius alexandrinus nivosus ) nesting on modified islands at the Don Edwards San Francisco Bay National Wildlife Refuge, California—2016 Annual Report

Executive Summary In order to address the 2008/10 and Supplemental 2014 NOAA Fisheries Biological Opinion for operation of the Federal Columbia River Power System, the U.S. Army Corps of Engineers (USACE) and the Bureau of Reclamation (Reclamation) developed and have begun implementation of Caspian tern ( Hydroprogne caspia ) management plans. This implementation includes redistribution of the Caspian terns in the Columbia River estuary and the mid-Columbia River region to reduce predation on salmonids listed under the Endangered Species Act. Key elements of the plans include (1) reducing nesting habitat for Caspian terns in the Columbia River estuary and the mid-Columbia River region, and (2) creating or modifying nesting habitat at alternative sites within the Caspian tern breeding range. USACE and Reclamation developed Caspian tern nesting habitat at the U.S. Fish and Wildlife Service Don Edwards San Francisco Bay National Wildlife Refuge (DENWR), California, prior to the 2015 nesting season. Furthermore, to reduce or eliminate potential conflicts between nesting Caspian terns and threatened western snowy plovers ( Charadrius alexandrinus nivosus), nesting habitat for snowy plovers also was developed. Seven recently constructed islands within two managed ponds (Ponds A16 and SF2) of DENWR were modified to provide habitat attractive to nesting Caspian terns (5 islands) and snowy plovers (2 islands). These 7 islands were a subset of 46 islands recently constructed in Ponds A16 and SF2 to provide waterbird nesting habitat as part of the South Bay Salt Pond (SBSP) Restoration Project. We used social attraction methods (decoys and electronic call systems) to attract Caspian terns and snowy plovers to these seven modified islands, and conducted surveys between March and September of 2015 and 2016 to evaluate nest numbers, nest density, and productivity. Results from the 2015 nesting season, the first year of the study, indicated that island modifications and social attraction measures were successful in establishing Caspian tern breeding colonies at Ponds A16 and SF2 of DENWR. The success of 2015 continued in 2016, the second year of the study. In 2016, Caspian terns nested on two of the five islands modified for Caspian terns (one island in Pond A16 and one island in Pond SF2). Caspian terns initiated at least 317 nests, fledged at least 158 chicks, and had a breeding success rate of 0.50 fledged chicks per breeding pair. This represents a 42 percent increase in nests initiated, a 9 percent decrease in the number of fledged chicks, and a 36 percent decrease in the number of chicks fledged per breeding pair in 2016 compared to 2015. Although overall productivity decreased from 2015, these results indicate that the Caspian tern breeding population on modified islands of the DENWR is increasing relative to 2015, the first year of the effort, and relative to years prior to 2015 when no breeding colonies of Caspian terns existed in Ponds A16 or SF2. These results indicate the effectiveness of social attraction measures in helping to establish tern nesting colonies in San Francisco Bay. Conversely, for the second year in a row, snowy plovers did not attempt to nest on any island in Ponds A16 and SF2. Social attraction measures similar to those used in this study, but targeting other colonial species such as Forster’s terns ( Sterna forsteri ) and American avocets ( Recurvirostra americana ), may help to establish waterbird breeding colonies at wetlands enhanced as part of the SBSP Restoration Project.

California↗
USGS2018

Social attraction used to establish Caspian tern (Hydroprogne caspia) nesting colonies on modified islands at the Don Edwards San Francisco Bay National Wildlife Refuge, California—Final report

To address the 2008/2010 and Supplemental 2014 National Oceanic and Atmospheric Administration Fisheries Biological Opinion for operation of the Federal Columbia River Power System, the U.S. Army Corps of Engineers (USACE) and the Bureau of Reclamation (Reclamation) developed and began implementation of Caspian tern ( Hydroprogne caspia ) management plans. This implementation includes redistribution of the Caspian terns in the Columbia River estuary and the mid-Columbia River region to reduce predation on salmonids listed under the Endangered Species Act. Key elements of the plans are (1) reduction of nesting habitat for Caspian terns in the Columbia River estuary and the mid-Columbia River region, and (2) creation or modification of nesting habitat at alternative sites within the Caspian tern breeding range. As part of this effort, USACE and Reclamation developed Caspian tern nesting habitat at the U.S. Fish and Wildlife Service Don Edwards San Francisco Bay National Wildlife Refuge (DENWR), California, prior to the 2015 nesting season. Furthermore, nesting habitat for western snowy plovers ( Charadrius alexandrinus nivosus ) also was developed to provide separate nesting opportunities in the same managed ponds to reduce potential conflicts with Caspian terns. Specifically, seven recently constructed islands within two managed ponds (Ponds A16 and SF2) of DENWR were modified to provide habitat attractive to nesting Caspian terns (5 islands) and snowy plovers (2 islands). These 7 islands were a subset of 46 islands recently constructed in Ponds A16 and SF2 to provide waterbird nesting habitat as part of the South Bay Salt Pond (SBSP) Restoration Project. We used social attraction methods (decoys and electronic call systems) to attract Caspian terns and snowy plovers to these seven modified islands, and conducted surveys from March to September of 2015, 2016, and 2017 to evaluate nest numbers, nest density, and productivity. Results from the 2015 nesting season, the first year of the study, indicated that island modifications and social attraction measures were successful in establishing Caspian tern breeding colonies at Ponds A16 and SF2 of DENWR. Prior to 2015, there was no history of Caspian terns nesting in either Pond A16 or Pond SF2. The success of 2015 continued in 2016 and 2017. In 2017, the third and final year of the project, Caspian terns initiated at least 664 nests, fledged at least 239 chicks, and had a breeding success rate of 0.36 fledged chicks per breeding pair. This represents a 171 percent increase in the number of breeding pairs and a 41 percent increase in the number of chicks fledged, but a 48 percent decrease in the fledglings produced per breeding pair in 2017 compared to 2015, the first year the colonies were established. The two new large and growing Caspian tern nesting colonies at Ponds A16 and SF2 demonstrate the effectiveness of social attraction measures in helping to establish tern nesting colonies in San Francisco Bay. Social attraction measures similar to those used in this study, but targeting other colonial species such as Forster’s terns ( Sterna forsteri ) and American avocets ( Recurvirostra americana ), may help to establish waterbird breeding colonies at wetlands enhanced as part of the SBSP Restoration Project.

California↗
USGS2020

Measured and calculated nitrate and dissolved organic carbon concentrations and loads at the W.P. Franklin Lock and Dam, S-79, south Florida, 2014-17

The U.S. Geological Survey monitored dissolved nitrate plus nitrite as nitrogen (N) and dissolved organic carbon (DOC) concentrations and calculated loads of these constituents at the W.P. Franklin Lock and Dam (S-79) from April 2014 to December 2017. Flows from Lake Okeechobee controlled by S-77, S-78 and S-79 affect water quality in the downstream Caloosahatchee River Estuary, where increased nutrients and dissolved organic matter are of concern. Numerous algal blooms have occurred in the Caloosahatchee River and downstream estuaries in recent years (2005–18) and are often attributed to eutrophication. Dissolved nitrate plus nitrite as N (hereafter, referred to as nitrate) data were collected at 15-minute intervals using a submersible ultraviolet optical nitrate sensor. The instrument data were corrected for interferences, as determined by the relation between instrument measurements and 20 concurrent laboratory values. A surrogate model, based on 36 concurrent measurements of DOC, fluorescence of chromophoric dissolved organic matter, and specific conductance, was developed to calculate DOC at 15-minute intervals. Mean and median calculated nitrate concentrations for the study period (2014–17) were both 0.21 milligram per liter (mg/L). Monthly mean nitrate concentrations ranged from 0.04 mg/L in April 2017 to 0.48 mg/L in November 2015. Monthly mean nitrate concentrations and the proportion of water that was attributed to Lake Okeechobee discharge, released through S-79, were weakly correlated and indicate that the nitrate concentrations typically decreased as the percentage of water released from the lake increased. Annual nitrate loads were 278 metric tons in 2015, 782 metric tons in 2016, and 525 metric tons in 2017. Monthly mean nitrate loads ranged from 1.2 metric tons in April 2017 to 171.3 metric tons in February 2016. Nitrate loads increased linearly with an increase in flow and typically increased during the wet season, May to October. Monthly loads of nitrate were strongly correlated with flow at S-77 and S-79. Mean and median calculated DOC concentrations for the study period were 18.3 mg/L and 18.9 mg/L, respectively. Monthly mean DOC concentrations ranged from 12.6 mg/L in May 2017 to 21.5 mg/L in September 2015. Generally, DOC concentrations were lower during the dry season months (November to April) and higher during the wet season months. Monthly mean DOC concentrations were moderately correlated with monthly mean flow volumes at S-79. There was a strong correlation between monthly mean DOC concentrations and the proportion of water released at S-79 that can be attributed directly to Lake Okeechobee, indicating that contributions between Moore Haven Lock and Dam (S-77) and S-79 have a higher DOC concentration than water released from Lake Okeechobee. Monthly mean nitrate concentrations and monthly mean DOC concentrations were strongly correlated. Annual loads of DOC were 23,960 metric tons in 2015 and 65,610 metric tons in 2016 (2014 and 2017 data were incomplete). Monthly loads of DOC ranged from 284 metric tons in May 2017 to 15,122 metric tons in September 2017, the latter corresponding to the effects from Hurricane Irma. Monthly loads of DOC were strongly correlated with flow at S-77 and S-79.

Florida↗
USGS2022

Assessment of vulnerabilities and opportunities to restore marsh sediment supply at Nisqually River Delta, west-central Washington

A cascading set of hazards to coastal environments is intimately tied to sediment transport and includes the flooding and erosion of shorelines and habitats that support communities, industry, infrastructure, and ecosystem functions (for example, habitats critical to fisheries). This report summarizes modeling and measurement data used to evaluate the sediment budget of the Nisqually River Delta, the vulnerability of the largest estuary restoration project in Puget Sound at the Billy Frank Jr. Nisqually National Wildlife Refuge, and the role of coastal hydrodynamics and potential restoration alternatives for recovering sediment delivery to its marshes. The 2009 Brown’s Farm Restoration achieved many goals toward recovering salmon habitat, but the understanding of the delta and restoration area sediment budgets remain poorly quantified. Specifically, quantitative estimates of the amount of sediment delivered to the delta and restored marsh areas, which had subsided in response to historical diking and draining for grazing, were identified as important information needs. Forecasts of potential outcomes of proposed adaptive distributary channel restoration actions were also prioritized to inform potential solutions. These estimates can be used to evaluate whether sufficient sediment is available for marsh recovery downstream from Alder Lake, which traps about 90 percent the Nisqually River sediment load that could reach the delta . Additionally, quantitative sediment information was identified to help prioritize opportunities to recover and maintain the area marshes and guide ecosystem restoration investments across the delta to reduce the vulnerability of the system to drowning under projected sea level rise. A coupled, numerical hydrodynamic-sediment transport model and measurements of the sediment load just upstream from the delta were used to evaluate the (1) availability of sediment for marsh recovery, (2) sediment transport dynamics across the estuary, and (3) potential outcomes of distributary reconnection alternatives under existing and projected conditions of streamflow and sea level. Modeling and measurements indicated that the volume of fluvial sediment load reaching and accumulating in the restoration area ranges from 7 to 32 percent and identified that restoration alternatives could recover about an additional 10–12 percent under current and projected sea-level rise by the year 2100. At these rates of sediment delivery, 85–200+ years may be necessary to fill for marsh vegetation development and maintenance. The model also reveals the sensitivity of sediment transport and accumulation to sediment properties, hydrodynamics, and wave conditions. The low sediment accumulation results in large part because of the role of waves in directing sediment transport offshore and challenges of restoring geomorphic processes suited to maintaining habitat structure where opportunity exists or least conflicts with land use. The findings therefore have implications for siting, phasing, and implementing strategies to route and retain sediment. This study shows that opportunities to recover sediment higher in the tidal prism, where a greater hydraulic gradient and gravity could promote progradation and greater sediment retention, may be more effective than alternatives lower in the tidal prism implemented to date and assessed in this study. Furthermore, the modeling indicates that distributary channel restoration also may provide additional benefits to society by reducing flood stage, and therefore, flood hazards surrounding the delta.

Washington↗
USGS2023

Analysis of aquifer framework and properties, North Magee Street well field, Southampton, New York

The U.S. Geological Survey, in cooperation with the Suffolk County Water Authority, evaluated the groundwater-flow characteristics and aquifer properties of the North Magee Street well field north of the village of Southampton, New York. Characteristics and properties included groundwater-flow direction, potential groundwater-contributing areas to the well field production wells, and aquifer transmissivity and storage. The groundwater flow and aquifer properties were also evaluated to allow Suffolk County Water Authority to better assess the potential source of dissolved halocarbons (refrigerants, such as chlorofluorocarbons). The well field production wells are screened in the upper glacial aquifer and an observation well is screened in the Magothy aquifer. Based on depth and available logs, groundwater from wells screened in the upper glacial aquifer was classified as under water-table (unconfined) conditions, and groundwater from wells screened in the Magothy aquifer was classified as being under semiconfined conditions. Groundwater flows radially to the well field during production and in a northwesterly direction under the effect of the regional flow regime. A previously published particle tracking analysis identified the following recharge contributing areas nearby the well field: (1) contributing areas to surface-water bodies of the Peconic Estuary, (2) contributing areas to surface-water bodies of the South Shore Estuary Reserve, (3) a contributing area to the Atlantic Ocean, and (4) a contributing area to another Suffolk County Water Authority well field. Five other pumping well contributing areas were identified within the study area, including those of various wells pumped for golf-course irrigation. Analysis of drawdown and recovery data collected during the multiple-well aquifer test, through the application of a Neuman analytical model, provided estimates of upper glacial aquifer characteristics and properties. Inclusion of lateral aquifer boundaries was not necessary for the analysis to result in satisfactory matches with the observed water-level responses. Aquifer transmissivity was estimated to be 170,000 feet squared per day. Storativity was estimated to be 0.02 (dimensionless), and specific yield was estimated to be 0.08 (dimensionless), consistent with the inferred degree of confinement and well field characteristics.

New York↗
USGS1972

Sediment loads in canals 18, 23, and 24 in southeastern Florida

Suspended-sediment concentrations and suspended-sediment discharges were determined in selected canals in St. Lucie, Martin, and Palm Beach Counties, in southeastern Florida. Sediment rating curves were developed to relate water discharge to sediment concentration at the three sites sampled. An evaluation of the concentration and sediment loads shows that larger amounts of suspended sediment were being carried into the St. Lucie River estuary than were being carried into the Loxahatchee River estuary. Peat and muck soils in areas drained for agricultural planting and citrus cultivation are readily carried by runoff water into major canals that traverse the region.

Florida↗
USGS1983

Geology and resources of the Andersonville, Georgia, kaolin and bauxite district

The kaolin and kaolin-rich sediments of the Andersonville district were deposited in an estuary environment with restricted circulation and little tidal or longshore current influence. Micaceous kaolinitic clays were deposited during late Paleocene time on broad, shallow water flats between deeper water distributary channels in the estuarine system. During the cycle of deposition, kaolinitic sediments were temporarily exposed to weathering leading to bauxitization and further kaolinization. Subsequently, subaerial and/or subaqueous erosion planed off and redeposited some of the weathering products as organic-rich clays and silts, berthierine-bearing clays, and rarely as colluvial bauxite and sedimentary bauxitic clays. Upon resubmergence, gibbsite-rich, porous bauxite, and bauxitic clays were exposed to silica-saturated water of the estuary. Gibbsite reacted with silica to form kaolinite and resulted in the formation of the transitional (bauxitic) clays overlying the bauxite. Kaolinitic sediments transported by streams again spread over the altered and redeposited material. At the close of the kaolin depositional period movement along the Andersonville Fault Zone and related faults changed the basinal configuration, and the area of the uplifted (southern) block of the fault was exposed to weathering and bauxitization for a limited period of time. General submergence again occurred and much of the district was covered by marine and brackish water, ending the period of commercial kaolin deposition. The kaolin and bauxite deposits in the Andersonville district form a broad belt 15 kilometers wide and 22 kilometers long trending in a northwest-southeastward direction. Most of the kaolin and bauxite of commercial value occur within a narrow 10-kilometer-wide zone in the belt. The reserves of kaolin suitable for refractory and chemical use are approximately 290 million tonnes. Paramarginal resources of sandy kaolin suitable for refractory, chemical, or aluminum manufacture after beneficiation are approximately 240 million tonnes. Indicated and inferred reserves of bauxite and bauxitic clay are 1.8 million tonnes and 7.3 million tonnes respectively.

Georgia↗
USGS1984

Chemical analyses of elutriates, native water, and bottom material from the Chetco, Rogue, and Columbia rivers in western Oregon

Chemical analyses of elutriates, bottom sediment, and water samples for selected metals, nutrients and organic compounds including insecticides, herbicides, and acid/neutral extractables have been made to provide data to determine short-term water-quality conditions associated with dredging operations in rivers and estuaries. Between April and August 1982, data were collected from the Chetco and Rogue River estuaries in southwestern Oregon, and from the mouth of the Columbia River in the northwestern Oregon to Cathlamet Bay, 18.2 miles upstream. In an elutriation test, bottom materials from a potential dredge site are mixed with native water - collected from either a dredge or disposal site - and the liquid portion of the mixture is removed, filtered, and chemically analyzed. Presented in this report are chemical and physical analyses of elutriates, native water, and bottom material for selected metals, ammonia, organic carbon, pesticides, particle size, and gas chromatographic/mass spectrometric semi-quantitative organic scans. Elutriate and bottom-material samples were screened specifically for phenolic compounds, particularly the chlorinated phenols; phenol was the only compound identified. Elutriate-test results showed variability for selected trace-metal concentrations of dissolved chemicals as follows: in micrograms per liter, arsenic ranged from < 1 to 15, cadmium from 1 to 210, copper from < 1 to 13, chromium from < 1 to 5, and nickel from 2 to 18. Results of computations to determine the amount of a constituent associated with bottom material and interstitial water and subsequently released (dissolved) into the elutriate-test native-mixing water are presented for selected trace metals. The highest elutriate-test release was 35 percent for manganese; the second highest, 5 percent for cadmium. All other computed releases were less than or equal to 1 percent. (USGS)

Open-File Report↗