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At least 991 records · Page 55Linked to original sources
USGS2013

Environmental health science at the U.S. Geological Survey

USGS environmental health science focuses on the environment-health interface. Research characterizes the processes that affect the interaction among the physical environment, the living environment, and people, as well as the factors that affect ecological and human exposure to disease agents and the resulting toxicologic or infectious disease. The mission of USGS in environmental health science is to contribute scientific information to environmental, natural resource, agricultural, and public-health managers, who use that information to support sound decisionmaking. Coordination with partners and stakeholders will enable USGS to focus on the highest priority environmental health issues, to make relevant, timely, and useable contributions, and to become a “partner of first choice” for environmental health science.

Fact Sheet↗
USGS2019

Spatial integration of biological and social objectives to identify priority landscapes for waterfowl habitat conservation

Waterfowl population management and habitat conservation compose one of the oldest and most successful adaptive management frameworks in the world. Since its inception, the North American Waterfowl Management Plan (NAWMP) has emphasized strategically targeted conservation investments in regions that most affect waterfowl population dynamics. By 2012, regional conservation had progressively become more science-based and strategic: many migratory bird partnerships had initiated or completed projects on mapping and modeling waterfowl distribution and abundances using geospatial techniques. However, when developing a map depicting and titled “Areas of Greatest Continental Significance to North American Ducks, Geese, and Swans” for the 2012 NAWMP Revision, waterfowl professionals articulated the need for improved decision frameworks and use of consistent datasets for refining large-scale spatial products depicting priority areas for waterfowl and people. This report describes a framework for developing a spatial value model to support the identification of North American geographies of importance to waterfowl during the breeding and non-breeding periods and to resource users who could potentially support (financially and (or) politically) waterfowl habitat conservation. Objectives used to identify priority geographies were determined through a collaborative process of the NAWMP Science Support Team, Priority Landscapes Committee (PLC), and other experts in the fields of waterfowl biology and ecology, environmental science, and human dimensions. ArcGIS Desktop was used as the platform for managing, analyzing, combining and displaying the spatial data as well as producing new data through spatial analysis functions. Thirty-eight spatial layers were developed, and several composite spatially explicit products (maps of North America) were produced based on PLC recommendations. The composite products have extensive similarities to the 2012 NAWMP map depicting areas of greatest continental significance to North American waterfowl. There are also some differences, especially in regions of the high Arctic and in Mexico. These differences between spatial value model maps and the 2012 NAWMP output likely arose from inclusion of social objectives, reduced dependence on expert opinion to generate abundance estimates, lack of population surveys in some regions and availability of expanded survey data in other regions, and use of model-based waterfowl population estimates for some unsurveyed areas. The structured decision-making framework application in this study is discussed, and the appropriate use of the products and their limitations are outlined. Additionally, options for future improvements are presented by identifying gaps in data collection, waterfowl-habitat association assumptions, and uncertainties related to social objectives. These spatial products are intended for use by national, regional, and province/state level wildlife professionals to aid their decisions in targeting waterfowl habitat conservation.

Open-File Report↗
USGS2018

Ecological drought: Accounting for the non-human impacts of water shortage in the Upper Missouri Headwaters Basin, Montana, USA

Water laws and drought plans are used to prioritize and allocate scarce water resources. Both have historically been human-centric, failing to account for non-human water needs. In this paper, we examine the development of instream flow legislation and the evolution of drought planning to highlight the growing concern for the non-human impacts of water scarcity. Utilizing a new framework for ecological drought, we analyzed five watershed-scale drought plans in southwestern Montana, USA to understand if, and how, the ecological impacts of drought are currently being assessed. We found that while these plans do account for some ecological impacts, it is primarily through the narrow lens of impacts to fish as measured by water temperature and streamflow. The latter is typically based on the same ecological principles used to determine instream flow requirements. We also found that other resource plans in the same watersheds (e.g., Watershed Restoration Plans, Bureau of Land Management (BLM) Watershed Assessments or United States Forest Service (USFS) Forest Plans) identify a broader range of ecological drought risks. Given limited resources and the potential for mutual benefits and synergies, we suggest greater integration between various planning processes could result in a more holistic consideration of water needs and uses across the landscape.

Montana↗
USGS2021

Sea star wasting disease pathology in Pisaster ochraceus shows a basal-to-surface process affecting color phenotypes differently

Sea star wasting disease (SSWD) refers to a suite of poorly described non-specific clinical signs including abnormal posture, epidermal ulceration, and limb autotomy (sloughing) causing mortalities of over 20 species of sea stars and subsequent ecological shifts throughout the northeastern Pacific. While SSWD is widely assumed to be infectious, with environmental conditions facilitating disease progression, few data exist on cellular changes associated with the disease. This is unfortunate, because such observations could inform mechanisms of disease pathogenesis and host susceptibility. Here, we replicated SSWD by exposing captive Pisaster ochraceus to a suite of non-infectious organic substances and show that development of gross lesions is a basal-to-surface process involving inflammation (e.g. infiltration of coelomocytes) of ossicles and mutable collagenous tissue, leading to epidermal ulceration. Affected sea stars also manifest increases in a heretofore undocumented coelomocyte type, spindle cells, that might be a useful marker of inflammation in this species. Finally, compared to purple morphs, orange P. ochraceus developed more severe lesions but survived longer. Longer-lived, and presumably more visible, severely-lesioned orange sea stars could have important demographic implications in terms of detectability of lesioned animals in the wild and measures of apparent prevalence of disease.

Diseases of Aquatic Organisms↗
USGS2020

Comparing environmental flow implementation options with structured decision making: Case study from the Willamette River, Oregon

Many frameworks have been used to identify environmental flows for sustaining river ecosystems or specific taxa in the face of widespread flow alteration for human use. However, these methods mostly focus on identifying suitable flows and largely ignore the important links between management actions, resulting flows, flow variability, and ecosystem or social responses. Structured decision making (SDM) could assist the comparison and implementation of environmental flows by providing a framework to compare effects of flow management actions on objectives via environmental flow science. We describe the SDM process and illustrate its application using a case study focused on comparing environmental flow scenarios for the mainstem Willamette River, Oregon, USA. In a short timeframe, SDM was successfully applied to identify management objectives, develop empirical and expert opinion based models predicting ecological responses, and compare scenarios while accounting for uncertainty and partial controllability. We found that no flow scenario was clearly preferred based on available knowledge, largely because river flows could only be partially controlled through available dam operations. Participants agreed that the SDM process was useful and that an additional iteration focused on refining predictive models and incorporating additional objectives could help better inform dam release decisions for the entire basin. In our view, SDM can provide managers with more realistic comparisons of environmental flows by accounting for partial controllability and uncertainty, which may result in greater implementation of available flow management actions.

Oregon↗
USGS2023

Understanding and mitigating thiaminase activity in silver carp

A deficiency of thiamine (vitamin B1), an essential cofactor for enzymes involved in metabolic processes, can be caused by the enzyme thiaminase. Thiaminase in food stocks has been linked to morbidity and mortality due to thiamine depletion in many ecologically and economically important species. Thiaminase activity has been detected in certain bacteria, plants, and fish species, including carp. The invasive silver carp ( Hypophthalmichthys molitrix) presents an enormous burden to ecosystems throughout the Mississippi River watershed. Its large biomass and nutritional content offer an attractive possibility as a food source for humans, wild animals, or pets. Additionally, harvesting this fish could alleviate some of the effects of this species on waterways. However, the presence of thiaminase would detract from its value for dietary consumption. Here we confirm the presence of thiaminase in several tissues from silver carp, most notably the viscera, and systematically examine the effects of microwaving, baking, dehydrating, and freeze-drying on thiaminase activity. Certain temperatures and durations of baking and microwaving reduced thiaminase activity to undetectable levels. However, caution should be taken when carp tissue is concentrated by processes without sufficient heat treatment, such as freeze-drying or dehydration, which results in concentration, but not inactivation of the enzyme. The effects of such treatments on the ease of extracting proteins, including thiaminase, and the impact on data interpretation using the 4-nitrothiophenol (4-NTP) thiaminase assay were considered.

Food Science↗
USGS2008

Advances and limitations of individual-based models to analyze and predict dynamics of mangrove forests: A review

Mangrove ecosystems are considered vulnerable to climate change as coastal development limits the ecosystem services and adaptations important to their survival. Although they appear rather simple in terms of species diversity, their ecology is complex due to interacting geophysical forces of tides, surface runoff, river and groundwater discharge, waves, and constituents of sediment, nutrients and saltwater. These interactions limit developing a comprehensive framework for science-based sustainable management practices. A suite of models have been developed independently by various academic and government institutions worldwide to understand the dynamics of mangrove ecosystems and to provide ecological forecasting capabilities under different management scenarios and natural disturbance regimes. The models have progressed from statistical tables representing growth and yield to more sophisticated models describing various system components and processes. Among these models are three individual-based models (IBMs) (FORMAN, KIWI, and MANGRO). A comparison of models’ designs reveal differences in the details of process description, particularly, regarding neighbor competition among trees. Each model has thus its specific range of applications. Whereas FORMAN and KIWI are most suitable to address mangrove forest dynamics of stands, MANGRO focuses on landscape dynamics on larger spatial scale. A comparison of the models and a comparison of the models with empirical knowledge further reveal the general needs for further field and validation studies to advance our ecological understanding and management of mangrove wetlands.

Aquatic Botany↗
USGS2018

Understanding how microbiomes influence the systems they inhabit

Translating the ever-increasing wealth of information on microbiomes (environment, host, or built environment) to advance the understanding of system-level processes is proving to be an exceptional research challenge. One reason for this challenge is that relationships between characteristics of microbiomes and the system-level processes they influence are often evaluated in the absence of a robust conceptual framework and reported without elucidating the underlying causal mechanisms. The reliance on correlative approaches limits the potential to expand the inference of a single relationship to additional systems and advance the field. We propose that research focused on how microbiomes influence the systems they inhabit should work within a common framework and target known microbial processes that contribute to the system-level processes of interest. Here we identify three distinct categories of microbiome characteristics (microbial processes, microbial community properties, and microbial membership) and propose a framework to empirically link each of these categories to each other and the broader system level processes they affect. We posit that it is particularly important to distinguish microbial community properties that can be predicted from constituent taxa (community aggregated traits) from and those properties that are currently unable to be predicted from constituent taxa (emergent properties). Existing methods in microbial ecology can be applied to more explicitly elucidate properties within each of these categories and connect these three categories of microbial characteristics with each other. We view this proposed framework, gleaned from a breadth of research on environmental microbiomes and ecosystem processes, as a promising pathway with the potential to advance discovery and understanding across a broad range of microbiome science.

Nature Microbiology↗
USGS2014

Reply to Efford on ‘Integrating resource selection information with spatial capture-recapture’

1. We proposed ( Methods in Ecology and Evolution , 2013, 4) a model for combining telemetry data with spatial capture–recapture (SCR) data that was vigorously criticized by Efford ( Methods in Ecology and Evolution , 2014, 000, 000). Efford's main claim was that our encounter probability model was incorrect, and therefore our R code and simulation results were wrong. 2. In fact, our encounter probability model is correct under the Poisson point process model that we used as a basis for our integrated model. On the other hand, the basis for Efford's claims clearly rest on the assumption of an alternative model which, while possibly useful, is distinct from that analysed in Royle et al. (Methods in Ecology and Evolution, 2013, 4). 3. A key point of Royle et al. ( Methods in Ecology and Evolution , 2013, 4) was that active resource selection induces heterogeneity in encounter probability which, if unaccounted for, should bias estimates of population size or density. The models of Royle et al. ( Methods in Ecology and Evolution , 2013, 4) and Efford ( Methods in Ecology and Evolution , 2014, 000, 000) merely amount to alternative models of resource selection, and hence varying amounts of heterogeneity in encounter probability.

Methods in Ecology and Evolution↗
USGS2008

Faunal impact on vegetation structure and ecosystem function in mangrove forests: A review

The last 20 years witnessed a real paradigm shift concerning the impact of biotic factors on ecosystem functions as well as on vegetation structure of mangrove forests. Before this small scientific revolution took place, structural aspects of mangrove forests were viewed to be the result of abiotic processes acting from the bottom-up, while, at ecosystem level, the outwelling hypothesis stated that mangroves primary production was removed via tidal action and carried to adjacent nearshore ecosystems where it fuelled detrital based food-webs. The sesarmid crabs were the first macrofaunal taxon to be considered a main actor in mangrove structuring processes, thanks to a number of studies carried out in the Indo-Pacific forests in the late 1970s and early 1980s. Following these classical papers, a number of studies on Sesarmidae feeding and burrowing ecology were carried out, which leave no doubts about the great importance of these herbivorous crabs in structuring and functioning Old world ecosystems. Although Sesarmidae are still considered very important in shaping mangrove structure and functioning, recent literature emphasizes the significance of other invertebrates. The Ocypodidae have now been shown to have the same role as Sesarmidae in terms of retention of forest products and organic matter processing in New world mangroves. In both New and Old world mangroves, crabs process large amounts of algal primary production, contribute consistently to retention of mangrove production and as ecosystem engineers, change particle size distribution and enhance soil aeration. Our understanding of the strong impact of gastropods, by means of high intake rates of mangrove products and differential consumption of propagules, has changed only recently. The role of insects must also be stressed. It is now clear that older techniques used to assess herbivory rates by insects strongly underestimate their impact, both in case of leaf eating and wood boring species and that herbivorous insects can potentially play a strong role in many aspects of mangrove ecology. Moreover, researchers only recently realized that ant–plant interactions may form an important contribution to our understanding of insect–plant dynamics in these habitats. Ants seem to be able to relieve mangroves from important herbivores such as many insects and sesarmid crabs. It thus seems likely that ants have positive effects on mangrove performance.

Aquatic Botany↗
USGS2024

Studies to assess natural resource recovery and evaluate monitoring methods for restored bottomland hardwood forests

The Natural Resource Damage Assessment and Restoration process assesses natural resource injury due to oil or chemical spills and calculates the damages to compensate the public for those injuries. Ecological restoration provides a means for recovering resources injured or lost due to contamination from oil or chemical spills by restoring the injured site after remediation, or acquiring or reconstructing equivalent resources off site to replace those lost due to the spill. In the case of restored forests, once restoration is implemented, monitoring of forest ecology helps keep recovery on track, with the maturation of forest vegetation, recovered soil conditions, and development of microbial, fungal, and faunal communities, necessary for ecologically functioning forests. This series of papers focuses on applying methods for monitoring restoration progress in forest vegetation and soils, and amphibian, avian, and mammalian communities, assessing strengths and weaknesses of different methods, and evaluating levels of effort needed to obtain accurate indications of forest ecological condition.

Integrated Environmental Assessment and Management↗
USGS2023

At what scales does a river meander? Scale-specific sinuosity (S3) metric for quantifying stream meander size distribution

Stream bend geometry is linked to terrain features, hydrologic and ecologic conditions, and anthropogenic forces. Knowledge of the distributions of geometric properties of streams advances understanding of changing landscape conditions and associated processes that operate over a range of spatial scales. Statistical decomposition of sinuosity in natural linear features has proven a longstanding challenge and a particular impediment to automated analysis. This paper demonstrates that sinuosity can vary with the magnitude of units at which it is measured (measurement scales). The paper derives a scale-specific sinuosity (S3) metric intended to measure stream bend geometry across a range of measurement scales. The metric is warranted for analysis and modeling at measurement scales equal or similar to the spatial process and landscape conditions under investigation. Derived from the Richardson (1961) plot, the S3 metric quantifies a frequency signature of planform bend sizes spanning a range of measurement units, enabling visual and quantitative analysis of bend geometry in linear stream features. Derivation of the metric makes evident a systematic relationship between stream bend size, sinuosity, and measurement scale, formalizing a relationship between sinuosity and fractal dimension. The paper shows the utility of the S3 metric in examining bend patterns for synthetic and real-world linear stream data.

Geomorphology↗
USGS2024

A multi-marker assessment of sewage contamination in streams using human-associated indicator bacteria, human-specific viruses, and pharmaceuticals

Human sewage contaminates waterways, delivering excess nutrients, pathogens, chemicals, and other toxic contaminants. Contaminants and various sewage indicators are measured to monitor and assess water quality, but these analytes vary in their representation of sewage contamination and the inferences about water quality they support. We measured the occurrence and concentration of multiple microbiological ( n = 21) and chemical ( n = 106) markers at two urban stream locations in Milwaukee, Wisconsin, USA over two years. Five-day composite water samples ( n = 98) were collected biweekly, and sewage influent samples ( n = 25) were collected monthly at a Milwaukee, WI water reclamation facility. We found the vast majority of markers were not sensitive enough to detect sewage contamination. To compare analytes for monitoring applications, five consistently detected human sewage indicators were used to evaluate temporal patterns of sewage contamination, including microbiological (pepper mild mottle virus, human Bacteroides , human Lachnospiraceae ) and chemical (acetaminophen, metformin) markers. The proportion of human sewage in each stream was estimated using the mean influent concentration from the water reclamation facility and the mean concentration of all stream samples for each sewage indicator marker. Estimates of instream sewage pollution varied by marker, differing by up to two orders of magnitude, but four of the five sewage markers characterized Underwood Creek (mean proportions of human sewage ranged 0.0025 % - 0.075 %) as less polluted than Menomonee River (proportions ranged 0.013 % - 0.14 %) by an order of magnitude more. Chemical markers correlated with each other and yielded higher estimates of sewage pollution than microbial markers, which exhibited greater temporal variability. Transport, attenuation, and degradation processes can influence chemical and microbial markers differently and cause variation in human sewage estimates. Given the range of potential human and ecological health effects of human sewage contamination, robust characterization of sewage contamination that uses multiple lines of evidence supports monitoring and research applications.

Wisconsin↗
USGS2025

Reevaluation of an adaptive management framework for invasive Grass Carp within Lake Erie

Objective Response efforts to control invasive species frequently require making decisions in the face of substantial uncertainty. Adaptive management, which emphasizes learning during the process of managing, can be useful in cases where uncertainty impedes the decision-making process. Here, we describe how technical and institutional learning led to reformulating decision-making elements, known as double-loop learning, and how uncertainty stemming from a lack of knowledge influenced the selection of alternative strategies in an ongoing adaptive management process for invasive Grass Carp Ctenopharyngodon idella in Lake Erie. Methods When response efforts began, little was known about the population dynamics, ecology, and biology of Grass Carp within the lake. The availability of funding for sustained response efforts was also unknown. A network population model was constructed that relied heavily on values and estimates from limited data to project adult Grass Carp abundance in Lake Erie and evaluate the ability of various response strategies to achieve the desired objectives. After this initial assessment, the collection of new information was emphasized as response efforts increased to aid future assessments. With this expanded knowledge and including additional input from stakeholders, we modified the population model, evaluated new response scenarios, refined objectives, and examined the influence of uncertainty (parameter and expert opinion) on Grass Carp response efforts. Results Under uncertainty of population model parameters and expert opinion, the value-of-information analysis revealed that uncertainties in spawning deterrent efficacy, survival, and the underlying stock–recruitment relationship were important and could change the preferred decision. The efficiency of spawning deterrents influenced the preferred decision outcome among alternative strategies, particularly when >80% of fish were allowed to pass and spawn, indicating that a deterrent may not be worth implementing if passing rates are above this threshold. Conclusions We thereby demonstrate the benefits for invasive species management programs of implementing learning and resolving uncertainties within an adaptive management framework to improve decision making.

Lake Erie↗
USGS2023

The patchwork governance of ecologically available water: A case study in the Upper Missouri Headwaters, Montana, United States

Institutional authority and responsibility for allocating water to ecosystems (“ecologically available water” [EAW]) is spread across local, state, and federal agencies, which operate under a range of statutes, mandates, and planning processes. We use a case study of the Upper Missouri Headwaters Basin in southwestern Montana, United States, to illustrate this fragmented institutional landscape. Our goals are to (a) describe the patchwork of agencies and institutional actors whose intersecting authorities and actions influence the EAW in the study basin; (b) describe the range of governance mechanisms these agencies use, including laws, policies, administrative programs, and planning processes; and (c) assess the extent to which the collective governance regime creates gaps in responsibility. We find the water governance regime includes a range of nested mechanisms that in various ways facilitate or hinder the governance of EAW. We conclude the current multilevel governance regime leaves certain aspects of EAW unaddressed and does not adequately account for the interconnections between water in different parts of the ecosystem, creating integrative gaps. We suggest that more intentional and robust coordination could provide a means to address these gaps.

Montana↗
USGS2019

The dilemma of pest suppression in the conservation of endangered species

In the conservation of endangered species, active suppression of a population of one native species to benefit another native species poses particular challenges. Obvious examples include predator control and nest parasite reduction. Less obvious is the control of blood-feeding arthropods. We present a case study on the effect of blood-feeding black flies (Simulium spp.) on reintroduced Whooping Cranes (Grus americana). Our intent is to provide a transferrable, science-driven approach for determining the effects of blood-feeding arthropods on endangered vertebrates, and demonstrate an approach for guiding selection of management actions for managers faced with competing objectives. A multi-year experiment demonstrated that black flies reduce nest success in reintroduced cranes by driving the birds off their nests during incubation. Deciding how to respond, however, is complicated because the target black flies are native species that serve important ecological functions. We suggest that a decision-analytic approach can inspire the development of creative management alternatives and facilitate a transparent process that evaluates trade-offs among competing objectives. Recognizing that these decisions involve trade-offs, which must be weighed in the context of each case, is crucial to identifying alternatives that best balance multiple management objectives. Given the uncertainty about the population dynamics of blood-feeding arthropods, an adaptive management approach will offer substantial benefits.

Wisconsin↗
USGS2025

Autumn as an overlooked opportunity for limnology

Ecological disciplines, from forestry to soil sciences and ornithology, recognize the critical role of autumn in an array of physical and biological processes. Terrestrial studies categorize autumn as the end of the growing season. Autumn weather conditions can disrupt plant-soil interactions, affecting nutrient cycling and soil fertility [1]; determine dormancy and freezing tolerance of trees during winter [2]; and create phenological mismatches that affect diet quality and predator-prey relationships [3]. In many lakes, autumn is marked by an important period of flux within the water column, affecting nutrient cycling, phytoplankton, and fish productivity [4]. Despite their importance, autumnal limnological processes remain understudied.

PLOS Climate↗
USGS2009

Nocturnal movements of desert bighorn sheep in the Muddy Mountains, Nevada

Adequate management of a species requires complete knowledge of its ecology, including both nocturnal and diurnal behavior. Knowledge of the movement behavior of bighorn sheep can provide insight for understanding spatial population processes as the combined result of individual behavior, physiological constraints, and fine-scale environmental influences. However, because of past difficulties in tracking radio-collared animals in the dark, little is known about nocturnal movements of many ungulates, including desert bighorn sheep (Ovis canadensis nelsoni). The use of GPS collars that supply sequential location records over a 24-hour period has provided new opportunities for recording movements of animals. We report findings from a preliminary analysis of data on nocturnal movements of desert bighorn sheep wearing GPS collars in the Muddy Mountains, Nevada. The study is part of a larger research project on movement patterns aimed at assessing the connectivity of bighorn sheep populations that comprise the metapopulation in southern Nevada. We recorded nighttime locations at 2100 and 0400 PST and calculated a total of 8,758 nocturnal movement distances for 12 ewes and 16 rams. Nocturnal movements were characteristic of all individuals. Bighorn sheep varied in the magnitude of movement from night to night and there were significant differences among individuals in the mean distance moved. Females had a greater proportion of short movement distances when compared to males; males had the greatest proportion of long distance movements. Movement distances were affected by sex, season, and percent of the moon’s surface illumination. Mean movement distances of males were greater than those of females. For both males and females, mean movement distances were shortest during the late spring months (April-June) and greatest during summer (July–September). Mean movement distances were greatest when the moon was brightest for all seasons except late spring, when movement distances for both sexes were shortest. We also describe movement distances >1 km (19% ewes, 81% rams) relative to movements within or between 50% core use areas, and nighttime intermountain and intra-mountain travel.

Black Mountain, Muddy Mountain↗