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At least 991 records · Page 55Linked to original sources

Metal fingerprints of Eocene rhyolite magmas coincident with Carlin-type gold deposition in Nevada USA

Eocene magmatic systems contemporaneous with world-class Carlin-type Au deposits in Nevada (USA) have been proposed by some researchers as a key ingredient for Au mineralization, though evidence conclusively demonstrating their genetic relationship remains tenuous. This study provides the first direct evidence of the pre-eruptive metal budget of volatile- and metal-charged silicic magmas coincident in time (~41 to 34 Ma) and space (within 5 km) with Carlin-type Au deposits. We characterize the pre-eruptive metal fingerprints of these diverse magmatic systems to assess their potential as sources of metals for Carlin-type Au mineralization. Metal abundances from quartz-hosted melt inclusions (Au, Te, Ag, Sb, Tl, Mo, W, Sn, As, Pb, Co, Cu, Ni, and Zn) characterized in situ by SHRIMP-RG and LA-ICP-MS represent our best (and only) estimates for the pre-eruptive metal budget in these systems. Median metal concentrations are generally within one order of magnitude of average upper crust and average continental rhyolite values. But there are two notable exceptions, with median Au contents extending >1 order of magnitude higher than average upper crust and median Cu contents ranging >1 order of magnitude lower than upper crust. Despite this, melts contain lower Au/Cu (<0.1), Au/Ag (<5), and Au/Tl (<0.3) than most ore-grade Carlin-type rock samples and quartz-hosted fluid inclusions, regardless of their age and timing relative to nearby Carlin-type Au mineralization. The metal fingerprints of these magmatic systems, de-fined both by traditional and multivariate compositional data analysis techniques, are distinct from one another. Yet none are particularly specialized, e.g., high Au/Cu, in terms of being ideal ingredients as postulated by magmatic models for Carlin-type Au mineralization. Magmatic Au contents do not appear to be correlated with rhyolite “flavors” in the way that Cu, Sn, and Nb contents are. Fluid/melt partitioning modeling and magma volume estimates support the idea that a diverse array of non-specialized silicic magmas could feasibly contribute some or potentially all of the Au, Ag, and Cu in Carlin-type systems. The compositional diversity among contemporaneous magmatic systems could possibly contribute to some of the diversity observed across Carlin-type Au districts in Nevada.

Nevada↗

Associations of benthic macroinvertebrate assemblages with environmental variables in the upper Clear Creek watershed, California

Benthic macroinvertebrates are integral components of stream ecosystems and are often used to assess the ecological integrity of streams. We sampled streams in the upper Clear Creek drainage in the Klamath—Siskiyou Ecoregion of northwestern California in fall 2004 (17 sites) and 2005 (original 17 plus 4 new sites) with the objectives of documenting the benthic macroinvertebrate assemblages supported by the streams in the area, determining how those assemblages respond to environmental variables, assessing the biological condition of the streams using a benthic index of biotic integrity (IBI), and understanding the assemblages in the context of biodiversity of the ecoregion. We collected both reach-wide (RW) and targeted-riffle (TR) macroinvertebrate samples at each site. The macroinvertebrate assemblages were diverse, with over 150 genera collected for each sampling protocol. The macroinvertebrate assemblages appeared to be most responsive to a general habitat gradient based on stream size, gradient, flow, and dominance of riffles. A second important habitat gradient was based on elevation and dominance of riffles. A gradient in water quality based on concentrations of dissolved ions and metals was also important. Models based on these 3 gradients had Spearman's rank correlations with macroinvertebrate taxonomic composition of 0.60 and 0.50 for the TR and RW samples, respectively. The majority (>50%) of the sites were in good or very good biological condition based on IBI scores. The diversity of macroinvertebrate assemblages is associated with the diversity of habitats available in the Klamath—Siskiyou Ecoregion. Maintaining the aquatic habitats in good condition is important in itself but is also vital to maintaining biodiversity in this diverse and unique ecoregion.

California↗

Conservation genetics of American crocodile, Crocodylus acutus , populations in Pacific Costa Rica

Maintaining genetic diversity is crucial for the survival and management of threatened and endangered species. In this study, we analyzed genetic diversity and population genetic structure at neutral loci in American crocodiles, Crocodylus acutus, from several areas (Parque Nacional Marino Las Baulas, Parque Nacional Santa Rosa, Parque Nacional Palo Verde, Rio Tarcoles, and Osa Conservation Area) in Pacific Costa Rica. We genotyped 184 individuals at nine microsatellite loci to describe the genetic diversity and conservation genetics between and among populations. No population was at Hardy-Weinberg Equilibrium (HWE) over all loci tested and a small to moderate amount of inbreeding was present. Populations along the Pacific coast had an average heterozygosity of 0.572 across all loci. All populations were significantly differentiated from each other with both FST and RST measures of population differentiation with a greater degree of molecular variance (81%) found within populations. Our results suggest C. acutus populations in Pacific Costa Rica were not panmictic with moderate levels of genetic diversity. An effective management plan that maintains the connectivity between clusters is critical to the success of C. acutus in Pacific Costa Rica.

Nature Conservation↗

The Grouse & Grazing Project: Effects of cattle grazing on demographic traits of greater sage-grouse

Greater sage-grouse (Centrocercus urophasianus) were once widespread within sagebrush -grassland ecosystems of western North America, but populations have declined since the mid-1960s. Though sage-grouse were not listed as threatened or endangered under the Endangered Species Act (ESA), when examined in 2015, they remain a species of interest and concern. Roughly half of the sage-grouse’s remaining habitat is on federal land, most of it managed by the Bureau of Land Management (BLM) and the U.S. Forest Service (USFS). Livestock grazing is the most extensive land use within sage-grouse habitat and the effects of livestock grazing on sage-grouse are often debated. The extensive decade-long research project summarized in this report was initiated to provide rigorous experimental research to inform the debate regarding the relationship between livestock grazing and sage-grouse. In 2012, the Idaho Grouse & Grazing Project was started with several partners including the University of Idaho, BLM, Idaho Department of Fish and Game (IDFG), and other partners to evaluate the effects of cattle grazing on sage-grouse vital rates. Many additional supporters have provided resources to this research effort including the Public Lands Council, Idaho Cattle Association, Idaho Governor’s Office of Species Conservation, Western Association of Fish & Wildlife Agencies, U.S. Fish and Wildlife Service, USFS, and numerous grazing associations and ranchers in Idaho. This 10-year research project was a scientifically rigorous and replicated experiment, occurring across five study sites in Idaho. This document is intended to provide a summary of the findings of this unprecedented study. Annual reports are available on the project’s website: https://idahogrousegrazing.org and scientific papers are being prepared and submitted to journals. The project focused on the influence of spring cattle grazing on sage-grouse vital rates across five study sites in Idaho including 21 BLM grazing pastures. From 2014-2023, we captured 1,343 grouse, documented the fate of 1,285 nests, and tracked 399 broods. Vegetation was characterized at 4,777 plots and grazing utilization levels were recorded at >30,000 locations. Because insects are an important food source for sage-grouse hens and their chicks, insect biomass and diversity were also examined in this study. We collected arthropods in 12,151 pitfall samples and 6,217 sweep-net samples across 786 plots within our five study sites. At each study site, three or four grazing treatments were implemented after two years of pre-treatment field investigations. These controlled cattle grazing treatments included spring-grazing in even years, spring-grazing in odd years, spring-and-fall grazing in alternating years, and a no grazing (or rested) control. Once grazing treatments were implemented at a study site, we measured sage-grouse demographic traits for 4-8 years post-treatment. Stocking rate (grazing intensity) was assessed across pastures each year and was influenced by vegetation communities, topography, and water sources. Grazed pastures exhibited lower grass cover and height compared to the no grazing pastures, and the extent of this difference varied based on annual precipitation levels. Rested pastures maintained higher grass cover and grass height, but the differences in habitat structure did not consistently translate to differences in sage-grouse demographic traits. Apparent nesting success varied annually and by site, ranging from 24% to 44% over the study period. Like some other studies, results from this research show that successful (i.e., hatched) sage-grouse nests have taller grass heights than failed nests. The average grass height surrounding successful nests in grazed pastures was shorter than that surrounding successful nests in non-grazed (i.e., rested) pastures. It is well documented that grazing reduces grass height, and these observations have led to widely held assumptions that livestock grazing reduces grass height which negatively affects sage-grouse nesting habitat. At the pasture scale, this study has found that sage-grouse nesting success is no greater in pastures that were rested for 4-8 years than those currently or recently grazed. This study gives no indication that removing cattle from pastures affected nesting success. We found some evidence that nest density varied among the grazing treatments, but we did not see compelling evidence of increases in density of nesting hens following cessation of grazing in the no grazing treatments. Brood survival varied by site and year but showed no strong effect of grazing treatment. Climatic conditions, particularly drought in 2021, had a greater effect on brood survival than grazing metrics. We also found no differences in hen survival among the grazing treatments. Results of this study suggest that hens nesting in spring and fall grazed pastures had similar or even slightly higher brood survival than hens in the rested pastures or the spring grazed pastures. Arthropod biomass and species diversity varied among our study sites and the differences between grazed and rested pastures also varied among study sites. Average biomass and diversity of arthropods was higher in the spring grazed pastures on two of three sites examined but higher in the rested pastures on the other site examined. Some taxa of arthropods were more abundant in grazed pastures while other taxa were more abundant in rested pastures. For example, Carabidae (Ground Beetles) and Formicidae (Ants) had higher biomass in grazed pastures, while Tenebrionidae (Darkling Beetles) and Acrididae (Grasshoppers) had higher biomass in non-grazed pastures. Results indicate that grazing effects on arthropod biomass and arthropod diversity are study site-dependent, suggesting a need to better quantify the most important prey taxa for sage-grouse chicks and to better control for other factors that influence arthropod abundance. Based on results of this research, livestock grazing, when properly managed, does not appear to negatively impact sage-grouse nest survival or brood success. This study provides critical insights for land managers balancing livestock production with sage-grouse conservation, supporting adaptive grazing strategies that maintain both economic and ecological objectives.

Idaho↗

Genomic structural variation rescues a classic biological invader from a population bottleneck

Invasion genetics presents a classic paradox: how do species successfully spread despite severe population bottlenecks? The brown treesnake ( Boiga irregularis ) in Guam represents a striking example of this phenomenon, having been introduced with only a handful of individuals. We show that the population endured an extreme bottleneck, with roughly half of the genome exhibiting runs of homozygosity, comparable to species of conservation concern. Despite this, we uncovered extensive diversity in the form of nearly 19,000 genomic structural variants, which affect almost eight times more of the genome than single-nucleotide variants and provide material for ‘rescuing’ the population from inbreeding-driven declines. Structural variant density was highest in gene promoters, where recombination and DNA repair often occur, providing a mechanism for rapid evolution of gene-linked diversity. This diversity is enriched in genes vital for adaptive immunity and olfaction, suggesting genomic diversity in key chromosomal regions can rescue populations from inbreeding. This work has critical implications for invasion biology and conservation genetics practitioners.

BioRxiv↗

Deep-ocean macrofaunal assemblages on ferromanganese and phosphorite-rich substrates in the Southern California Borderland

Mineral-rich hardgrounds, such as ferromanganese (FeMn) crusts and phosphorites, occur on seamounts and continental margins, gaining attention for their resource potential due to their enrichment in valuable metals in some regions. This study focuses on the Southern California Borderland (SCB), an area characterized by uneven and heterogeneous topography featuring FeMn crusts, phosphorites, basalt, and sedimentary rocks that occur at varying depths and are exposed to a range of oxygen concentrations. Due to its heterogeneity, this region serves as an optimal setting for investigating the relationship between mineral-rich hardgrounds and benthic fauna. This study characterizes the density, diversity, and community composition of macrofauna (>300 μm) on hardgrounds as a function of substrate type and environment (depth and oxygen ranges). Rocks and their macrofauna were sampled quantitatively using remotely operated vehicles (ROVs) during expeditions in 2020 and 2021 at depths above, within, and below the oxygen minimum zone (OMZ). A total of 3,555 macrofauna individuals were counted and 416 different morphospecies (excluding encrusting bryozoans and hydrozoans) were identified from 82 rocks at depths between 231 and 2,688 m. Average density for SCB macrofauna was 11.08 ± 0.87 ind. 200 cm −2 and mean Shannon-Wiener diversity per rock (H′ [loge] ) was 2.22 ± 0.07. A relationship was found between substrate type and macrofaunal communities. Phosphorite rocks had the highest H′ of the four substrates compared on a per-rock basis. However, when samples were pooled by substrate, FeMn crusts had the highest H′ and rarefaction diversity. Of all the environmental variables examined, water depth explained the largest variance in macrofaunal community composition. Macrofaunal density and diversity values were similar at sites within and outside the OMZ. This study is the first to analyze the macrofaunal communities of mineral-rich hardgrounds in the SCB, which support deep-ocean biodiversity by acting as specialized substrates for macrofaunal communities. Understanding the intricate relationships between macrofaunal assemblages and mineral-rich substrates may inform effects from environmental disruptions associated with deep-seabed mining or climate change. The findings contribute baseline information useful for effective conservation and management of the SCB and will support scientists in monitoring changes in these communities due to environmental disturbance or human impact in the future.

California↗

The influence of different deep-sea coral habitats on sediment macrofaunal community structure and function

Deep-sea corals can create a highly complex, three-dimensional structure that facilitates sediment accumulation and influences adjacent sediment environments through altered hydrodynamic regimes. Infaunal communities adjacent to different coral types, including reef-building scleractinian corals and individual colonies of octocorals, are known to exhibit higher macrofaunal densities and distinct community structure when compared to non-coral soft-sediment communities. However, the coral types have different morphologies, which may modify the adjacent sediment communities in discrete ways. Here we address: (1) how infaunal communities and their associated sediment geochemistry compare among deep-sea coral types ( Lophelia pertusa, Madrepora oculata, and octocorals) and (2) do infaunal communities adjacent to coral habitats exhibit typical regional and depth-related patterns observed in the Gulf of Mexico (GOM). Sediment push cores were collected to assess diversity, composition, numerical abundance, and functional traits of macrofauna (>300 µm) across 450 kilometers in the GOM at depths ranging from 263–1,095 m. Macrofaunal density was highest in L. pertusa habitats, but similar between M. oculata and octocorals habitats. Density overall exhibited a unimodal relationship with depth, with maximum densities between 600 and 800 m. Diversity and evenness were highest in octocoral habitats; however, there was no relationship between diversity and depth. Infaunal assemblages and functional traits differed among coral habitats, with L. pertusa habitats the most distinct from both M. oculata and octocorals. These patterns could relate to differences in sediment geochemistry as L. pertusa habitats contained high organic carbon content but low proportions of mud compared to both M. oculata and octocoral habitats. Distance-based linear modeling revealed depth, mud content, and organic carbon as the primary factors in driving coral infaunal community structure, while geographic location (longitude) was the primary factor in functional trait composition, highlighting both the location and ecological differences of L. pertusa habitats from other coral habitats. Enhanced habitat structural complexity associated with L. pertusa and differences in localized hydrodynamic flow may contribute to the dissimilarities in the communities found among the coral types. Our results suggest a decoupling for infaunal coral communities from the typical depth-related density and diversity patterns present throughout soft-sediment habitats in the GOM, highlighting the importance of deep-sea corals in structuring unique communities in the nearby benthos.

PeerJ↗

Management and conservation of San Francisco Bay salt ponds: effects of pond salinity, area, tide, and season on Pacific Flyway waterbirds

Throughout the world, coastal salt ponds provide habitat for large numbers and diversities of water- birds. San Francisco Bay contains the most important coastal salt pond complexes for waterbirds in the United States, supporting more than a million waterbirds through the year. As an initial step in attempting to understand how the anticipated conversion of salt ponds to tidal marsh might affect the Bay's bird populations, the number of birds using salt ponds on high and low tides was counted during the winter months of 1999/00 and 2000/01. Be- havior and habitat use of birds in these ponds were assessed, and the effects of tide cycle, pond salinity, and pond area on bird use were examined. We recorded 75 species ofwaterbirds in surveys of salt ponds in the South Bay from September 1999 to February 2001, totaling over a million bird use days on high tide. Shorebirds and dabbling ducks were the most abundant groups of birds using the salt ponds. Waterbird numbers and diversity were significantly affected by the salinity of ponds in a non-linear fashion with lower numbers and diversity on the highest salinity ponds. With the exception of ducks and Eared Grebe (Podiceps nigricollis), tide height at the Bay significantly affect- ed bird numbers in the salt ponds with ponds at high tides having higher numbers of birds than the same ponds on low tides. Considerable numbers of birds fed in the salt ponds on high and low tides, although this varied greatly by species. Habitat use varied by tide. Management recommendations include maintaining ponds of varying salini- ties and depths. Restoring salt ponds to tidal marsh should proceed with caution to avoid loss of waterbird diversity and numbers in San Francisco Bay.

Waterbirds↗

Saline lakes of the glaciated Northern Great Plains

Unless you have flown over the region or seen aerial photographs, it is hard to grasp the scale of the millions of lakes and wetlands that dot the prairie landscape of the glaciated Northern Great Plains (Figure 1). This region of abundant aquatic habitats within a grassland matrix provides for the needs of a wide diversity of wildlife species and has appropriately been deemed the "duck factory of North America." While the sheer number of lakes and wetlands within this area of the Northern Great Plains can be truly awe-inspiring, their diversity in terms of the chemical composition of their water adds an equally important component supporting biotic diversity and productivity. Water within these lakes and wetlands can range from extremely fresh with salinities approaching that of rainwater to hypersaline with salinity ten times greater than that of seawater. Additionally, while variation in salinity among these water bodies can be great, the ionic composition of lakes and wetlands with similar salinities can vary markedly, influencing the overall spatial and temporal diversity of the region's biota.

Lakeline↗

Temporal and geographic variation in fish communities of lower Cook Inlet, Alaska

Nearshore and shelf fish communities were studied in three areas of lower Cook Inlet, Alaska: the Barren Islands (oceanic and well-mixed waters), Kachemak Bay (mixed oceanic waters with significant freshwater runoff), and Chisik Island (estuarine waters). Fish were sampled with beach seines (n=413 sets) and midwater trawls (n=39 sets). We found that lower Cook Inlet supported a diverse nearshore fish community of at least 52 species. Fifty of these species were caught in Kachemak Bay, 24 at Chisik Island, and 12 at the Barren Islands. Pacific sand lance dominated Barren Islands and Kachemak Bay nearshore habitats, comprising 99% and 71% of total individuals, respectively. The nearshore Chisik Island fish community was not dominated by any one species; instead it exhibited higher diversity. These spatial differences appeared linked to local oceanographic regimes and sediment influx. Analysis of historical data revealed that the nearshore Kachemak Bay fish community changed significantly between 1976 and 1996, showing increased diversity and abundance in several taxa, notably gadids, salmonids, pleuronectids, and sculpins. Decadal differences appeared to be related to large-scale climate changes in the North Pacific. Catches of most taxa peaked in May-August, and were low during other months of the year. Several species were present for only part of the summer. Species composition of seine catches differed significantly between consecutive high and low tides, but not between consecutive sets or years. Midwater trawls took 26 species, 14 of which were present in Kachemak Bay, 19 near Chisik Island, and 7 at the Barren Islands. Community structures in shelf and nearshore waters were similar: diversity was high and abundance low at Chisik Island, whereas a few abundant species dominated at both Kachemak Bay and the Barren Islands. In addition, the low fish abundance near Chisik Island appeared to be related to declining seabird numbers at this colony.

Fishery Bulletin↗

Synopsis of wetland functions and values: bottomland hardwoods with special emphasis on eastern Texas and Oklahoma

Bottomland hardwood wetlands are the natural cover type of many floodplain ecosystems in the southeastern United States. They are dynamic, productive systems that depend on intermittent flooding and moving water for maintenance of structure and function. Many of the diverse functions performed by bottomland hardwoods (e.g., flood control, sediment trapping, fish and wildlife habitat) are directly or indirectly valued by humans. Balanced decisions regarding bottomland hardwoods are often hindered by a limited ability to accurately specify the functions being performed by these systems and, furthermore, by an inability to evaluate these functions in economic terms. This report addresses these informational needs. It focuses on the bottomland hardwoods of eastern Texas and Oklahoma, serving as an introduction and entry to the literature. It is not intended to serve as a substitute for reference to the original literature. The first section of the report is a review of the major functions of bottomland hardwoods, grouped under the headings of hydrology, water quality, productivity, detritus, nutrients, and habitat. Although the hydrology of these areas is diverse and complex, especially with respect to groundwater, water storage at high flows can clearly function to attenuate peak flows, with possible reductions in downstream flooding damage. Water moving through a bottomland hardwood system carries with it various organic and inorganic constituents, including sediment, organic matter, nutrients, and pollutants. When waterborne materials are introduced to bottomland hardwoods (from river flooding or upland runoff), they may be retained, transformed, or transported. As a result, water quality may be significantly altered and improved. The fluctuating and flowing water regime of bottomland hardwoods is associated with generally high net primary productivity and rapid fluxes of organic matter and nutrients. These, in turn, support secondary productivity in the bottomland hardwoods and downstream through detrital export. A large number of studies detail the extensive utilization of bottomland hardwoods by animals. Several basic habitat components contribute to this support function, including: 1. Fluctuating water levels and permanent bodies of water, 2. Hard mast (e.g., acorns), 3. Dens and cavities, 4. High soil fertility, 5. Diversity of food and cover, 6. Predominance of woody plant communities, 7. Close proximity of diverse structural features, and 8. Linear features providing movement corridors. The second section of the report focuses on the bottomlands of eastern Texas and Oklahoma, including topics such as climate, soils, water resources, historical perspective, vegetation, and fauna. Considerable attention is given to structural characteristics in this section, in order to provide contrasts with bottomland hardwood ecosystems in other areas. In general, the bottomland hardwoods of eastern Texas and Oklahoma are very similar to those elsewhere in the southeastern United States. Differences include the occurrence and relative importance of some community types and plant species and the greater importance of reservoir construction as a source of bottomland hardwoods loss in eastern Texas and Oklahoma. Again, information on faunal utilization is extensive relative to the information available concerning other functions.

Oklahoma;Texas↗

Protection of fish spawning habitat for the conservation of warm-temperature reef-fish fisheries of shelf-edge reefs of Florida

We mapped and briefly describe the surficial geology of selected examples of shelf-edge reefs (50–120 m deep) of the southeastern United States, which are apparently derived from ancient Pleistocene shorelines and are intermittently distributed throughout the region. These reefs are ecologically significant because they support a diverse array of fish and invertebrate species, and they are the only aggregation spawning sites of gag ( Mycteroperca microlepis ), scamp ( M. phenax ), and other economically important reef fish. Our studies on the east Florida shelf in the Experimental Oculina Research Reserve show that extensive damage to the habitat-structuring coral Oculina varicosa has occurred in the past, apparently from trawling and dredging activities of the 1970s and later. On damaged or destroyed Oculina habitat, reef-fish abundance and diversity are low, whereas on intact habitat, reef-fish diversity is relatively high compared to historical diversity on the same site. The abundance and biomass of the economically important reef fish was much higher in the past than it is now, and spawning aggregations of gag and scamp have been lost or greatly reduced in size. On the west Florida shelf, fishers have concentrated on shelf-edge habitats for over 100 yrs, but fishing intensity increased dramatically in the 1980s. Those reefs are characterized by low abundance of economically important species. The degree and extent of habitat damage there is unknown. We recommend marine fishery reserves to protect habitat and for use in experimentally examining the potential production of unfished communities.

Florida↗

Population genetic structure of moose ( Alces alces ) of South-central Alaska

The location of a population can influence its genetic structure and diversity by impacting the degree of isolation and connectivity to other populations. Populations at range margins are often thought to have less genetic variation and increased genetic structure, and a reduction in genetic diversity can have negative impacts on the health of a population. We explored the genetic diversity and connectivity between 3 peripheral populations of moose ( Alces alces ) with differing potential for connectivity to other areas within interior Alaska. Populations on the Kenai Peninsula and from the Anchorage region were found to be significantly differentiated (F ST = 0.071, P < 0.0001) with lower levels of genetic diversity observed within the Kenai population. Bayesian analyses employing assignment methodologies uncovered little evidence of contemporary gene flow between Anchorage and Kenai, suggesting regional isolation. Although gene flow outside the peninsula is restricted, high levels of gene flow were detected within the Kenai that is explained by male-biased dispersal. Furthermore, gene flow estimates differed across time scales on the Kenai Peninsula which may have been influenced by demographic fluctuations correlated, at least in part, with habitat change.

Alces↗

Saving our shared birds: Partners in Flight tri-national vision for landbird conservation

Landbirds are the most abundant and diverse group of birds in North America, with nearly 900 species distributed across every major terrestrial habitat. Birds are indicators of environmental health; their populations track changes in habitat, water, disease, and climate. They are providers of invaluable ecosystem services, such as pest control, seed dispersal, and pollination. As the focus of bird watching, they help generate billions of dollars for national economies. Yet, we are in danger of losing this spectacular and irreplaceable bird diversity: landbirds are experiencing significant declines, ominous threats, and shrinking habitats across a continent with growing human populations, increasing resource consumption, and changing climate. Saving Our Shared Birds presents for the first time a comprehensive conservation assessment of landbirds in Canada, Mexico, and the continental United States. This new tri-national vision encompasses the complete range of many migratory species and highlights the vital links among migrants and highly threatened resident species in Mexico. It points to a set of continent-scale actions necessary to maintain the landbird diversity and abundance that are our shared responsibility. This collaborative effort of Partners in Flight (PIF) is the next step in linking the countries of the Western Hemisphere to help species at risk and keep common birds common through voluntary partnerships—our mission since 1990. Saving Our Shared Birds builds upon PIF’s 2004 North American Landbird Conservation Plan, which presented science-based priorities for the conservation of 448 landbird species in Canada and the United States. Our three nations have expressed their commitment to cooperative conservation through numerous international treaties, agreements, and programs, including formation of the North American Bird Conservation Initiative (NABCI) a decade ago. The NABCI partnership recognizes that effective conservation requires a concerted effort within each country, as well as a tri-national strategy to address issues throughout the full life cycles of our birds. Today more than ever, it is urgent for the people of Canada, Mexico, and the United States to work together to keep common birds common, prevent extinction of our bird species at greatest risk, and ensure the diversity and abundance of birdlife across North America and throughout the hemisphere, far into the future. Saving Our Shared Birds shows the way forward.

Report↗

Vegetation changes over 12 years in ungrazed and grazed Conservation Reserve Program Grasslands in the central and southern plains

The Conservation Reserve Program (CRP) established under the 1985 Food Security Act has the fundamental objectives of jointly providing economic support to segments of the agricultural community and conservation of natural resources (Osborn, 1997; Heard and others, 2000). Although soil loss on highly erodable lands was the principal natural resource conservation issue addressed in the 1985 CRP, improving water quality and wildlife habitat both became important considerations as the program evolved (Farmer and others, 1988). For example, Best and others (1997) found that production of young birds on CRP fields in the Midwest was ≥15 times the production on row-crop fields because of improved habitat. The increasing importance of wildlife habitat is reflected in continuing refinement of the Environmental Benefits Index (EBI) used by the U.S. Department of Agriculture (USDA) to quantify the potential benefits of enrolling lands in CRP (Osborn, 1997; Ribaudo and others, 2001). The refinements reflect input furnished by federal, state, and non-government organizations seeking greater wildlife habitat quality on CRP lands (Roseberry and David, 1994; Hughes and others, 1995; Millenbah and others, 1996; Patterson and Best, 1996; Rodgers, 1999; Allen and others, 2001). Refinement in the EBI has changed the types of grasses planted on newly enrolled land. In early CRP signups (1 through 11), 71% of new grassland acres were planted to introduced grasses and legumes [Conservation Practice (CP) 1] while 29% of the acres were planted to native grasses (CP2) (Osborn and others, 1992). By the 27th signup in July 2004, over 34.8 million acres (14 million ha) were enrolled in the CRP. More than 73% of these lands were planted to various mixtures of introduced (CP1) or native (CP2) grasses for a minimal contract period of 10 years (USDA, 2004). Continuation of grass plantings under the 2002 Farm Bill may result in CRP lands furnishing grass dominated cover for 20 or more consecutive years. The species of grass established in seeded grasslands can have a major influence on the potential quality of wildlife habitat where vegetation is maintained over a multi-year period. Different species of grass may have comparable abilities to alleviate soil erosion but furnish dissimilar qualities of wildlife habitat (fig. 1). For example, smooth brome, an introduced cool-season grass (grass species and scientific names are presented in table 1), is highly valued for its erosion control and forage attributes (Casler and Carlson, 1995). Switchgrass, a native warm-season grass, also is valued for its soil and water conservation qualities (Moser and Vogel, 1995) but provides greater benefits for some species of wildlife (Clubine, 1995). The quality of nesting and winter cover for ring-necked pheasants (Phasianus colchicus) furnished by smooth brome on northeastern Colorado CRP lands is inferior to that provided by the taller, more robust switchgrass (Allen, 1994). Characteristics of the agricultural landscape surrounding individual CRP fields also play a role in the wildlife habitat potential of CRP plantings (Weber and others, 2002; Nusser and others, 2004). of native and seeded grasslands change in response to the presence (and absence) of physical disturbances such as fire, grazing, tillage, and haying (Hobbs and Huenneke, 1992; Millenbah and others, 1996; Allen and others, 2001; Renfrew and Ribic, 2001; Swengel and Swengel, 2001). The perpetuation of diversity in species composition and vegetation structure following disturbance sustains desirable habitat for a variety of grassland-dependent wildlife (Hall and Willig, 1994; Barnes and others, 1995; King and Savidge, 1995; Granfors and others, 1996; Herkert and others, 1996; Kurzejeski, 1996; Patterson and Best, 1996; Klute and others, 1997). Undisturbed grasslands have lower grass and forb species diversity, greater amounts of dead plant material, decreased as well as seasonally delayed productivity, and diminished structural diversity of vegetation (Peet and others, 1975; Rice and Parenti, 1978; Butler and Briske, 1988; Campa and Winterstein, 1992). Recommendations for the timing of disturbance to increase grass and forb species diversity range from 3 to 8 years following establishment of seeded grasslands in the northern Great Plains and Midwest (Duebbert and others, 1981; Higgens, 1987; Millenbah and others, 1996). The management interval, however, is affected by climatic conditions, soils, grass species, and management history of the individual stand. We quantified changes in vegetation structure and species composition across the typical 10-year contract period in undisturbed southern and central Great Plains CRP fields (fig. 2) planted to introduced and native grasses. In addition, we compared changes in vegetation in fields grazed during the emergency release of 1996 by comparing conditions prior to grazing and two and four years post grazing relative to changes in similar fields that were not grazed. Documentation of long-term changes in vegetation structure and composition for fields planted to common grass seed mixtures across a wide range of environmental conditions provides information to improve long-term wildlife habitat potential, guide program administration, and define management practices that yield economic benefits to operators while still meeting wildlife and conservation objectives. Emergency grazing provisions of the CRP are controversial. Although grazing can alter vegetative characteristics and reduce habitat quality in the short-term (Temple and others, 1999), periodic disturbance may be necessary to maintain habitat quality, and more information is needed assessing long-term effects of emergency grazing on vegetative structure and species composition.

Conference Paper↗

Fishes of Missouri River, chute, and flood plain habitats: Chapter 4 in Initial biotic survey of Lisbon Bottom, Big Muddy National Fish and Wildlife Refuge

The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge (Refuge) is approximately 2,200 acres and is the first complete unit of the Refuge. Primary objectives of the Refuge are to create and restore diverse riverine aquatic habitats and reconnect the Missouri River to its flood plain where feasible. Management seeks to accomplish these objectives by encouraging natural processes of erosion, deposition, and succession to the greatest extent possible. One of the most salient aquatic features of the Lisbon Bottom Unit is a newly created 2-mile-long free-flowing chute, or side channel (Fig. 1). This chute began forming as a levee breech scour hole during the Great Flood of 1993. The chute continued to develop during the 1995 flood and finally cut through to a flowing side channel during the 1996 flood. Extensive erosion and bank sluffing continued during 1997 due to sustained high flows that occurred throughout most of the year. The chute has progressively become wider and deeper with a developing meander pattern and channel bars have begun to form. Lisbon Bottom also contains several seasonal and permanent wetlands and is subject to periodic flooding at high Missouri River stages. Eight studies have been completed or are ongoing to evaluate Missouri River fishes associated with various habitat components of Lisbon Bottom and adjacent Missouri River reaches (Table 1). Several are part of much larger investigations to evaluate fish use of flood-created habitat features, basinwide fish assessment, and endangered or candidate species concerns. At the Lisbon Bottom Unit or in the Missouri River adjacent to the unit 54 fish species were collected (Table 2). Eight of these species have either a protected status under State or Federal laws or biologists consider them to potentially qualify for protected status. The status of the following fish is listed in Table 2: pallid sturgeon x shovelnose sturgeon hybrid, paddlefish, northern pike, sturgeon chub, sicklefin chub, ghost shiner, western silvery minnow, plains minnow, and blue sucker. Equally important to note are fish species that were not collected. The flathead chub, currently listed as State endangered and proposed for Federal listing, were not collected in any of the studies. Common fish species, collected in all seven sampling studies, included gizzard shad, common carp, river carpsucker, and freshwater drum. Paddlefish, skipjack herring, silver carp, white sucker, redfin shiner, western silvery minnow, bullhead minnow, and black bullhead were each collected in only one of the seven studies. Pflieger (1971) developed a guild system for the fishes of Missouri based on distribution patterns and centers of abundance. Fish were assigned to one of four primary faunal groups: Ozark, Big River, Lowland, and Prairie. Two secondary groups (Ozark-prairie and Ozark-lowland) were defined for species equally abundant and distributed in two of the primary areas. Two Ozark-prairie species, shorthead redhorse and white sucker, were collected on or near the Lisbon Bottom Unit. Big River species are found primarily in the Missouri and Mississippi Rivers. The environmental factors controlling fish distribution in these rivers appear to be substrate, current velocity, and turbidity. On or near the Lisbon Bottom Unit 18 Big River species were collected (Table 2). Lowland species are intolerant of siltation and high turbidity. They inhabit standing or slow-moving water with sand, fine gravel, and organic debris substrates. Two Lowland species, bullhead minnow and mosquitofish, were collected in connected scours on the Lisbon Bottom Unit. Prairie species have broader ecological tolerances than the Ozark and Lowland species. They are largely absent in high gradient streams and cool, clear waters. Prairie species make up a significant proportion of Missouri and Mississippi River fishes. Seven Prairie species were collected on or near the Lisbon Bottom Unit (Table 2). The last group, Wide-ranging, was defined as the species more widespread than the other faunal groups with broader environmental tolerances. Most Wide-ranging species occur at least occasionally in all sections of the state. Nineteen Wide-ranging species were collected on or near the Lisbon Bottom Unit (Table 2). Kubisiak (1997) found that isolated scours in the Lower Missouri River were dominated by Wide-ranging species. Connected scours also held Wideranging species but they contained Prairie species and were dominated by Big River species. Faunal group diversity and species richness were compared between isolated (Study l) and connected (Studies 4, 5, 7, and 8) scours of the Lisbon Bottom Unit. Species richness was similar with 22 species collected in isolated scours and an average of 24.8 species collected in connected scours. Isolated scour fish catches were dominated by Wide-ranging fish (59%) with 14% Big River fishes and 14% Prairie fishes. Connected scours had a larger percentage of Big River fish (32%) and fewer Wide-ranging (36%) and Prairie (13%) species than the isolated scours. In the combined studies, Wide-ranging fish dominated the connected scours. A similar comparison was made of fish from chute habitats and the Missouri River. Chute habitats include the Lisbon Bottom Chute, the chute between the right bank and island located at river mile 219, and a shallow channel running between a large sandbar complex and the channel border adjacent to Lisbon Bottom. Species richness in the chutes (35 species) was greater than that of the adjacent river (23 species). Big River species (40%) dominated the chute samples, followed by Wide-ranging at 31% Cand Prairie Cut 14%. The river samples contained equal numbers of Wide-ranging species (35%) and Big River species (35%) with 17% Prairie species. Differences in fish guild diversity and species richness may be due to numerous factors including sampling effort and sampling season. River samples were collected only in Study 3 in October; chute samples were collected in July, August, and October. Fish may have been using the chute in July and August to spawn, feed, or escape high river levels. The Lisbon Bottom Chute is a truly unique feature of the Lower Missouri River. It is the first naturally created side channel to develop since the U.S. Army Corps of Engineers tamed the river. The Corps eliminated 89% of the islands in the Missouri River between 1879 and 1954 (Funk and Robinson 1974). The chutes between the islands and the shore were shallower with less current than the main channel. These areas provided diversity to the Missouri River fish habitat, serving as nursery and feeding areas. The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge will continue to be studied in an effort to understand the complex role these areas play in river systems.

Missouri↗

Protection of fish spawning habitat for the conservation of warm temperate reef fish fisheries of shelf-edge reefs of Florida

We mapped and briefly describe the surficial geology of selected examples of shelf-edge reefs (50–120 m deep) of the southeastern United States, which are apparently derived from ancient Pleistocene shorelines and are intermittently distributed throughout the region. These reefs are ecologically significant because they support a diverse array of fish and invertebrate species, and they are the only aggregation spawning sites of gag ( Mycteroperca microlepis ), scamp ( M. phenax ), and other economically important reef fish. Our studies on the east Florida shelf in the Experimental Oculina Research Reserve show that extensive damage to the habitat-structuring coral Oculina varicosa has occurred in the past, apparently from trawling and dredging activities of the 1970s and later. On damaged or destroyed Oculina habitat, reef-fish abundance and diversity are low, whereas on intact habitat, reef-fish diversity is relatively high compared to historical diversity on the same site. The abundance and biomass of the economically important reef fish was much higher in the past than it is now, and spawning aggregations of gag and scamp have been lost or greatly reduced in size. On the west Florida shelf, fishers have concentrated on shelf-edge habitats for over 100 yrs, but fishing intensity increased dramatically in the 1980s. Those reefs are characterized by low abundance of economically important species. The degree and extent of habitat damage there is unknown. We recommend marine fishery reserves to protect habitat and for use in experimentally examining the potential production of unfished communities.

Florida↗

Managed aquifer recharge in snow-fed river basins: What, why and how?

What does climate change mean for snow-fed river basins? Climate change poses unique challenges in snow-fed river basins across the western United States because the majority of water supply originates as snow (Dettinger, Udall, & Georgakakos, 2015). In the Sierra Nevada, recent observations include changes in snow accumulation and snowmelt, and shifts in peak streamflow timing (Barnhart et al., 2016; Hatchett et al., 2017; Kim & Jain, 2010; McCabe, Wolock, & Valentin, 2018; Mote, Li, Lettenmaier, Xiao, & Engel, 2018). Such changes upstream alter surface water deliveries downstream, as well as groundwater recharge utilized as both primary and supplemental water supply (Godsey et al., 2014; Harpold, 2016; Jasechko et al., 2014). basin where snowmelt runoff produces substantial water supply to meet diverse agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the Carson Valley, a rich agricultural region (40,000 acres) that grows primarily alfalfa hay. The majority of irrigators rely on surface water delivered through a network of earthen ditches constructed in the mid-19th and early 20th centuries. Flow through these earthen networks and the practice of flood irrigation contribute significantly to groundwater recharge. Because no upstream surface water reservoirs exist, snowpack that accumulates through winter and melts slowly through spring has acted as a “natural” reservoir, providing ample supply through the summer irrigati agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the season. Some irrigators have permitted access to supplemental groundwater that is useful during periods of drought for augmenting shortfalls in surface water delivery. Groundwater is the primary source of municipal and industrial water supply for surrounding communities (e.g., Carson City, Minden, Gardnerville, Dayton). Across the basin, water use is highly regulated through federal, tribal, state and local water-sharing agreements based on prior appropriation doctrine (Wilds, 2014). Carson River surface water allocations follow the Alpine Decree, initiated by the United States Department of Interior in 1925 and signed into law in 1980, following 55 years of litigation, to adjudicate surface water rights to individual parties (NDWP, 1999). The Alpine Decree acknowledges return flows to lower river segments, and thus each river segment is distributed autonomously. This means that the most junior water right on an upper segment can be fulfilled before considering the most senior water right on a lower segment. Ultimately, the ruling is at the discretion of the Federal Water Master to satisfy the needs of each water right Downstream of Carson Valley, surface water flows are stored in Lahontan Reservoir, the nation’s first desert reclamation project (est. 1906), where releases are managed to meet the Newland’s Project irrigation water demand and for environmental use on the Stillwater National Wildlife Refuge. Flows from the Carson River are supplemented through diversions from the Truckee River via the Truckee Canal, resulting in a trans-basin water supply system. How is the Water for the Seasons research program informing snow-fed river basin communities? In the Truckee-Carson River System, researchers and local water managers are working together to assess climate change impacts to water supply and explore how model simulations can produce useful information to support local climate adaptation. Twelve key water managers represent agricultural, environmental, urban and regulatory water-use communities, and bring to the table diverse input and perspectives on how to adapt to climate change. Hydrologists use this input to craft scenarios and simulations that meet the information needs of local water managers. Biannual workshops provide an opportunity for information exchange, where researchers and key water managers generate new knowledge of river system function. That is, researchers share results of models that examine the physical potential, and managers validate the on-the-ground potential, further informing the research process. Coincident to this research program, the region faced a prolonged drought period (2012-2016) with historically low snowpack, followed by a historic wet year (2017) that brought winter and spring flooding as a result of atmospheric river storm events (Sterle et al., 2019). For the Carson River, an important observation made by managers was that peak streamflow that had traditionally coincided with peak irrigation demands, had shifted to earlier in the spring, with summer baseflow also decreasing (Sterle & Singletary, 2017). Managers shared with researchers concerns over potential future impacts that changing snowpack will have on surface water deliveries and reliance on groundwater, as the region’s population and economy continue to grow. During workshops that occurred over this period, local water managers and researchers discussed ways to evaluate water distribution and use that honors the existing legal framework and accounts for changing snowpack regimes (amount, rain versus snow, timing). In response to managers growing interest, researchers introduced the concept of managed aquifer recharge as one potential strategy to adapt and enhance regional water sustainability. What is managed aquifer recharge? Simply stated, managed aquifer recharge is the intentional recharge of structures to spread water over agricultural lands, allowing water to naturally infiltrate into the groundwater system (Bouwer, 1999; Niswonger et al., 2017). The latter may occur during the irrigation season by applying excess water, or during the nonirrigation season when evapotranspiration losses are low. Figure 2 illustrates managed aquifer recharge in a snow-fed river basin, where streamflow generated from snowmelt runoff is diverted to agricultural lands to recharge the aquifer. Such flood irrigation practices, including water delivery through earthen ditch networks, provide incidental but significant aquifer recharge through seepage and deep drainage beneath fields (Niswonger, Allander, & Jeton, 2014). The effects of managed aquifer recharge can vary depending on the location and intensity of practice. For example, implementing managed aquifer recharge water into the groundwater system (Dillon, 2009). This differs from the incidental recharge that may occur as part of normal irrigation practices. Managed recharge may occur by injection into the aquifer through existingwells, or by using existing conveyance adjacent to/along the river’s floodplain has the potential to enhance late-season instream flows due to increased return flows, resulting in greater downstream deliveries as well as improving ecological conditions (Niswonger et al., 2017). Implementing managed aquifer recharge away from the river’s floodplain has the potential to enhance groundwater supply which is increasingly relied upon during surface water shortage (Green et al., 2011), by storing water in available aquifer space in the deep aquifer. At the basin scale, managed aquifer recharge may lead to regional groundwater sustainability. Is the Carson River Basin a candidate for managed aquifer recharge? The physical limitations to implementing managed aquifer recharge in the Carson River Basin hinges on three key factors. The first factor relates to the physical connectivity between rivers and streams, and the irrigation delivery network of canals and ditches that divert water to agricultural lands (Niswonger et al., 2017). In the Carson River Basin the mechanisms for getting water to fields is already in place. Thus, intentionally routing high flows that occur in wet years through this system during the nonirrigation season would mimic what occurs naturally during the irrigation season. The second factor relates to the occurrence of atmospheric river storm events that deliver large amounts of precipitation to the region, much greater than average (Dettinger et al., 2015). With increased frequency and intensity projected under a warmer climate, such events have the potential to produce excess water over short periods of time that could be stored through mechanisms such as managed aquifer recharge (Niswonger et al., 2017). The third factor relates to the change in snowpack accumulation and shifts in snowmelt timing observed elsewhere in the Sierra Nevada (e.g., Godsey et al., 2014; Mote et al., 2018). Having a mechanism in place to maximize use of earlier snowmelt and shifts in streamflow timing could be advantageous and enhance regional groundwater sustainability. As part of the Water for the Seasons study, a hypothetical scenario was developed to determine the feasibility of managed aquifer recharge in the Carson River Basin, assuming no legal constraints. During “wet” or above-average water years, irrigators in the Upper Carson Valley would divert high flows and spread water over agricultural lands during the nonirrigation season. Assuming flows are abundant and “early,” diversions would begin prior to the growing season, when water would otherwise flow downstream to the Lahontan Reservoir. During “dry” years or drought periods, when surface water availability is less, irrigators in the Upper Carson Valley could augment surface water shortages with groundwater, allowing available surface water flows to flow downstream. Researchers hypothesize the amount of water has the potential to boost baseflow to support environmental instream flows, for example. What concerns have local water managers expressed? The hypothetical managed aquifer recharge scenario was presented to water managers in a workshop setting. Presentations included an overview of the hydrologic and operations modeling tools used to evaluate managed aquifer recharge by simulating the timing and distribution of water in the upper watershed. Specifically, in the Upper Carson Valley, a hydrologic model (GSFLOW) simulates streamflow driven by snowmelt, and surface and groundwater interactions, while a river basin operations model (MODSIM) allocates water according to the prior appropriation doctrine in the basin (see Figure 1) (Morway, Niswonger, & Triana, 2016; Niswonger et al., 2017). Integrating these two modeling tools advances the evaluation of climate impacts on water availability in agricultural communities and the resulting impacts of alternative management strategies (Morway et al., 2016). When asked about the viability of managed aquifer recharge, the perspectives of 11 managers varied (Figure 3). Regardless of rating, all managers questioned, “How would thisreally work?” Several managers questioned whether models could simulate the connectivity between surface and groundwater to accurately quantify changes to instream flow. Others raised concerns that managed aquifer recharge violates the Alpine Decree and Nevada Water Law. Still others requested researchers consider alternatives that could work within the confines of current (2019) water law. Managers posed specific questions that should be considered when evaluating the potential for managed aquifer recharge. For example: What triggers implementation of managed aquifer recharge?How “high” or “low” must annual flows be to initiate managed aquifer recharge? When in the water year is this determined? Where exactly in the Carson Valley is managed aquiferre charge possible? For example, what areas away from the floodplain could ensure long-term storage? Can model simulations quantify potential benefits and consequences system-wide?Would this information support decision-making, such as permitting of additional supplemental groundwater rights? How are researchers going to address managers’ research questions? Managers’ perspectives help to validate the on-the-ground potential of particular strategies and further refine alternative management scenarios. For example, understanding that managers are concerned with oversaturated fields helps researchers to define conditions in the model, such as what defines a wet versus “too” wet type of year and where to focus irrigation for managed aquifer recharge. Incorporating these nuances provides more accurate quantification of the potential benefits and consequences for users across the basin. Modeling is underway to simulate managed aquifer recharge scenarios and explore basin-wide implications. Researchers and local water managers will convene to collaboratively review results and further assess whether this or other strategies could work under the confines of existing water law. Subsequent fact sheets will present these findings.

Nevada↗