Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Estuaries”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 973 records · Page 54Linked to original sources
USGS2001

Utility of splenic macrophage aggregates as an indicator of fish exposure to degraded environments

The utility of splenic macrophage aggregates (MAs) as an indicator of fish exposure to degraded environments was evaluated in several species of estuarine fishes as part of the Environmental Protection Agency's Environmental Monitoring and Assessment Program–Estuaries (EMAP-E). Using image analysis, we measured the number and mean size of MAs per square millimeter on tissue sections of spleen from 983 fishes representing seven species from 266 stations scattered across coastal estuaries of the Gulf of Mexico. At 16 stations, at least one fish exhibited a high density of MAs (>40 MAs/mm 2 ). Densities of MAs that exceeded 40/mm 2 correlated with exposure to either hypoxic conditions or sediment contamination. Fisher's exact test showed that the observed frequencies of joint occurrence between high numbers of MAs and both high sediment contaminants and low dissolved oxygen were significantly greater than the expected background frequencies. For all 16 sites where MAs were greater than 40/mm 2 , sediments displayed at least one contaminant at a concentration in the highest 5% of those observed for all Gulf of Mexico stations. Additionally, comparison of subjective visual analyses with the image analysis measurements showed a strong correlation, indicating that similar analyses can be performed without computer image analysis. This study demonstrates that splenic MAs are effective biotic indicators for discriminating between fish exposed to degraded and nondegraded environments.

Alabama, Florida, Louisiana, Mississippi, Texas↗
USGS2009

Fishing mortality in North Carolina's southern flounder fishery: direct estimates of instantaneous fishing mortality from a tag return experiment

Estimation of harvest rates is often a critical component of fishery stock assessment and management. These assessments are often based on catch-at-age data sets generated over many years, but estimates of instantaneous fishing mortality ( F ) can also be obtained from a shorter-term tag return study. We conducted a 2-year tag return experiment to generate direct estimates of F for southern flounder Paralichthys lethostigma in a North Carolina estuary. The southern flounder supports lucrative commercial and recreational fisheries within the state and has experienced heavy fishing pressure for more than a decade. During 2005 and 2006, fish were captured and tagged with the assistance of commercial harvesters in the New River estuary. Tag returns were used to generate monthly estimates of F , which demonstrated a clear seasonal pattern that was consistent between years. Several important assumptions of the tag return model were accounted for through the use of double-tagged individuals, the distribution of both high- and standard-reward tags, and the completion of an independent controlled experiment to evaluate mortality related to tagging. Annual estimates of F exceeded the short-term management target in both years. Residual patterns suggest that the estimates may actually have been biased low, possibly due to delayed mixing of tagged fish. Thus, despite recently amended fishery regulations, F in the North Carolina southern flounder gill-net fishery still has the potential to greatly exceed targeted levels, which may delay stock recovery. Tag return studies can provide reliable (and nearly real-time) information about F and natural mortality as long as the experimental design addresses specific assumptions related to tagging-induced mortality, tag shedding, and nonreporting of tags.

North Carolina↗
USGS2006

Fish-assemblage variation between geologically defined regions and across a longitudinal gradient in the Monkey River Basin, Belize

Linkages between geology and fish assemblages have been inferred in many regions throughout the world, but no studies have yet investigated whether fish assemblages differ across geologies in Mesoamerica. The goals of our study were to: 1) compare physicochemical conditions and fish-assemblage structure across 2 geologic types in headwaters of the Monkey River Basin, Belize, and 2) describe basin-scale patterns in fish community composition and structure for the benefit of conservation efforts. We censused headwater-pool fishes by direct observation, and assessed habitat size, structure, and water chemistry to compare habitat and fish richness, diversity, evenness, and density between streams in the variably metamorphosed sedimentary geologic type typical of 80% of Belize’s Maya Mountains (the Santa Rosa Group), and an anomalous extrusive geologic formation in the same area (the Bladen Volcanic Member). We also collected species-presence data from 20 sites throughout the basin for analyses of compositional patterns from the headwaters to the top of the estuary. Thirty-nine fish species in 21 families were observed. Poeciliids were numerically dominant, making up 39% of individuals captured, followed by characins (25%), and cichlids (20%). Cichlidae was the most species-rich family (7 spp.), followed by Poeciliidae (6 spp.). Habitat size and water chemistry differed strongly between geologic types, but habitat diversity did not. Major fish-assemblage differences also were not obvious between geologies, despite a marked difference in the presence of the aquatic macrophyte, Marathrum oxycarpum (Podostemaceae), which covered 37% of the stream bottom in high-nutrient streams draining the Santa Rosa Group, and did not occur in the low-P streams draining the Bladen Volcanic Member. Correlation analyses suggested that distance from the sea and amount of cover within pools are important to fish-assemblage structure, but that differing abiotic factors may influence assemblage structure within each geologic type. The fauna showed weak compositional zonation into 3 groups (headwaters, coastal plain, and nearshore). Nearly 20% of the fish species collected have migratory life cycles (including Joturus pichardi , Agonostomus monticola , and Gobiomorus dormitor ) that use freshwater and marine habitats. Some of these species probably rely on a natural flow regime and longitudinal connectivity for reproduction and dispersal of young, and natural flow regime and longitudinal connectivity are important factors for maintenance of functional linkages between the uplands and the coast in the ridge-to-reef corridor where the Monkey River is located. Therefore, we suggest that the viability of migratory fish populations may be a good biological indicator of upland-to-estuary connectivity important both to fishes and coastal ecosystem function. We recommend follow-up studies to substantiate the relative strengths of relationships between community structure and abiotic factors in contrasting geologies and to examine potential bottom−up responses of stream biota to the higher nutrient levels that were observed in stream waters draining the Santa Rosa Group geologic type.

Journal of the North American Benthological Societ↗
USGS2010

Spatial trends in tidal flat shape and associated environmental parameters in South San Francisco Bay

Spatial trends in the shape of profiles of South San Francisco Bay (SSFB) tidal flats are examined using bathymetric and lidar data collected in 2004 and 2005. Eigenfunction analysis reveals a dominant mode of morphologic variability related to the degree of convexity or concavity in the cross-shore profileindicative of (i) depositional, tidally dominant or (ii) erosional, wave impacted conditions. Two contrasting areas of characteristic shapenorth or south of a constriction in estuary width located near the Dumbarton Bridgeare recognized. This pattern of increasing or decreasing convexity in the inner or outer estuary is correlated to spatial variability in external and internal environmental parameters, and observational results are found to be largely consistent with theoretical expectations. Tidal flat convexity in SSFB is observed to increase (in decreasing order of significance) in response to increased deposition, increased tidal range, decreased fetch length, decreased sediment grain size, and decreased tidal flat width. ?? 2010 Coastal Education and Research Foundation.

Journal of Coastal Research↗
USGS2019

A ship's ballasting history as an indicator of foraminiferal invasion potential--An example from Prince William Sound, Alaska, USA

We investigated the potential role of ballast sediment from coastal and transoceanic oil tankers arriving and de-ballasting in Port Valdez as a vector for the introduction of invasive benthic foraminifera in Prince William Sound, Alaska. Forty-one ballast sediment samples were obtained in 1998-1999 from 11 oil tankers that routinely discharged their ballast in Prince William Sound after sailing from other West Coast (Los Angeles/Long Beach Harbor, San Francisco Bay, and Puget Sound) or foreign ports (Japan, Korea, and China) where they originally ballasted. Forty of these samples contained benthic foraminifera, including 27 (66%) with the introduced species Trochammina hadai Uchio from nine (81%) of the ships. In all, 59 species were recovered and foraminiferal abundance peaked at 27,000 specimens per gram dry sediment. Of the 41 samples, three were stained and living benthic foraminifera were recovered in all three of them. The entrained foraminifera reflected the number of times ballasting occurred (single or multiple sources), the location of ballasting (estuarine or offshore), and post-acquisition alteration of the sediment (i.e., growth of gypsum crystals at the possible expense of calcareous tests). In temperate regions, sediment samples resulting from single-source ballasting in estuaries (SSBE), multiple-source ballasting in estuaries (MSBE), single-source ballasting offshore (SSBO), and a combination of SSBO and SSBE or MSBE, typically contained increasingly higher species richness, respectively. The potential for an invasion is dependent on the presence of viable candidates and their survivability, their abundance in the ballasting location, and the number of times ballasting occurs, most of which are evident from the ship’s ballasting history. Trochammina hadai is a good example of a successful invasive in Prince William Sound for the following reasons: 1) the species is abundant enough in West Coast and foreign ports where ballasting occurs that sufficient individuals needed for reproduction may be transported to the receiving waters; 2) Port Valdez, in particular, receives repeated and frequent inoculations from the same source ports where T. hadai is present; 3) large quantities of sediment are taken up by commercial vessels during ballasting and benthic foraminifera occur in abundance in ballast sediment; 4) ballast sediment provides a suitable environment in which benthic foraminifera can survive for extended periods of time during transport; 5) T. hadai flourishes in a wide range of temperatures and environmental conditions that characterize both the ports where ballasting takes place as well as in Port Valdez where de-ballasting occurs; and 6) the species is capable of asexual reproduction and possibly the ability to form a dormant resting stage, both of which have the potential to lower the threshold for colonization. Clearly, ballast sediment is a viable vector for the introduction of T. hadai and other invasives into Alaskan ports and elsewhere worldwide.

Alaska↗
USGS2011

Diet of juvenile and adult American Shad in the Columbia River

The diet of juvenile and adult American shad Alosa sapidissima captured from various locations in the Columbia River was investigated during 2007 and 2008. Collection efforts in 2007 were restricted to fish collected from existing adult and juvenile fish collection facilities located at Bonneville Dam and to adult shad captured by angling downstream from Bonneville Dam. In 2008, we used gillnets, electrofishing, beach seining, or cast nets to collect juvenile and adult shad from the saline estuary near Astoria (approximately river km 24) to just upstream from McNary Dam (approximately river km 472). We examined the stomach contents of 436 American shad captured in 2007 and 1,272 captured in 2008. Fish caught within the river were much more likely to contain food items than fish removed from fish collection facilities. The diet of age-0 American shad varied spatially and temporally, but was comprised primarily of crustaceans and insects. Prey diversity of age-0 American shad, as assessed by the Shannon Diversity Index, increased with decreasing distance to the estuary. Pre- and partial-spawn adult American shad primarily consumed Corophium spp. throughout the Columbia River; however, post-spawn adults primarily consumed gastropods upstream of McNary Dam.

Oregon, Washington↗
USGS1996

Wetlands: water, wildlife, plants, & people

Wetlands are part of all our lives. They can generally be described as transitional areas between land and deepwater habitats. There are many different kinds of wetlands, and they can be found in many different habitat types, from forests to deserts; some are maintained by saltwater, others by freshwater. This poster shows general types of diverse wetlands and demonstrates how people and wetlands can benefit by living together. The diversity of plants and animals is shown in cartooned pictures. As with plants and animals, there are many different common names for the various wetland types. The common names used on this poster were used by the U.S. Fish and Wildlife Service in the publication "Wetlands-Status and Trends in the Conterminous United States, Mid-1970's to Mid-1980's." Estuarine wetland types--salt marshes and mangrove swamps--are labeled in red letters. The estuary is where ocean saltwater and river freshwater mix. The estuary is labeled in orange letters. The inland wetland types-inland marshes and wet meadows, forested wetlands, and shrub wetlands-are labeled in yellow. Other wetlands are present in rivers, lakes, and reservoirs. The water bodies associated with these wetlands are labeled in black. The poster is folded into 8.5" x 11" panels; front and back panels can easily be photocopied.

General Information Product↗
USGS2011

Integrating science and resource management in Tampa Bay, Florida

Tampa Bay is recognized internationally for its remarkable progress towards recovery since it was pronounced "dead" in the late 1970s. Due to significant efforts by local governments, industries and private citizens throughout the watershed, water clarity in Tampa Bay is now equal to what it was in 1950, when population in the watershed was less than one-quarter of what it is today. Seagrass extent has increased by more than 8,000 acres since the mid-1980s, and fish and wildlife populations are increasing. Central to this successful turn-around has been the Tampa Bay resource management community's long-term commitment to development and implementation of strong science-based management strategies. Research institutions and agencies, including Eckerd College, the Florida Wildlife Commission Fish and Wildlife Research Institute, Mote Marine Laboratory, National Oceanic and Atmospheric Administration, the Southwest Florida Water Management District, University of South Florida, U.S. Environmental Protection Agency, U.S. Geological Survey, local and State governments, and private companies contribute significantly to the scientific basis of our understanding of Tampa Bay's structure and ecological function. Resource management agencies, including the Tampa Bay Regional Planning Council's Agency on Bay Management, the Southwest Florida Water Management District's Surface Water Improvement and Management Program, and the Tampa Bay Estuary Program, depend upon this scientific basis to develop and implement regional adaptive management programs. The importance of integrating science with management has become fully recognized by scientists and managers throughout the region, State and Nation. Scientific studies conducted in Tampa Bay over the past 10–15 years are increasingly diverse and complex, and resource management programs reflect our increased knowledge of geology, hydrology and hydrodynamics, ecology and restoration techniques. However, a synthesis of this research and its integration into resource management has not been prepared for Tampa Bay since the mid-1980s. The need for an up-to-date synthesis of Tampa Bay science and management has resulted in the production of this document. The U.S. Geological Survey recently completed a 5-year Tampa Bay Integrated Science Study, and the Tampa Bay Estuary Program updated the Comprehensive Conservation and Management Plan for Tampa Bay in 2006. These efforts build upon results of the many research and management studies and programs summarized here.

Florida↗
USGS2019

San Francisco Bay triennial bird egg monitoring program for contaminants, California—2018

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP), administered by the San Francisco Estuary Institute, is a large-scale effort to monitor contaminant trends in water, sediment, fish, and birds throughout San Francisco Bay (San Francisco Estuary Institute, 2016). As part of the RMP and the U.S. Geological Survey (USGS) long-term Wildlife Contaminants Program, the USGS samples doublecrested cormorant ( Phalacrocorax auritus ) and Forster’s tern ( Sterna forsteri ) eggs throughout the San Francisco Bay approximately every 3 years to assess temporal trends in contaminant concentrations. This sampling has previously been carried out by USGS in 2009, 2012, and 2016. This document summarizes egg collections for 2018, as well as mercury concentrations in Forster’s tern eggs on an individual egg basis. These data are available in a USGS data release (Ackerman and others, 2019).

California↗
USGS2006

Water-Quality Data for the Lower Russian River Basin, Sonoma County, California, 2003-2004

In 2003, the U.S. Geological Survey, in cooperation with the Sonoma County Water Agency, began a study to determine the chemical, microbiological, and isotopic composition of the surface water and ground water in selected areas of the Lower Russian River Basin, Sonoma County, California. This report is a compilation of the hydrologic and water-quality data collected from 10 Russian River sites, 1 gravel-terrace pit site, 12 ground-water sites, 11 tributary sites including Mark West Creek, and 2 estuary sites between the city of Healdsburg and the Pacific Ocean, for the period August 2003 to September 2004. Field measurements made included streamflow, barometric pressure, dissolved oxygen, pH, specific conductance, and turbidity. Water samples were analyzed for nutrients, major ions, total and dissolved organic carbon, trace elements, mercury, wastewater compounds, total coliform, Escherichia coli, Enterococci, Clostridium perfringens, and the stable isotopes of hydrogen and oxygen. Discharge measurements and sampling techniques were modified to accommodate the very low summer flows at most of the tributaries, and discharge measurements were made with an acoustic Doppler velocity meter at the estuary river site to overcome the complexities associated with tidal influences.

Data Series↗
USGS2014

Flow monitoring along the western Tamiami Trail between County Road 92 and State Road 29 in support of the Comprehensive Everglades Restoration Plan, 2007-2010

The construction of U.S. Highway 41 (Tamiami Trail), the Southern Golden Gate Estates development, and the Barron River Canal has altered the flow of freshwater to the Ten Thousand Islands estuary of Southwest Florida. Two restoration projects, the Picayune Strand Restoration Project and the Tamiami Trail Culverts Project, both associated with the Comprehensive Everglades Restoration Plan, were initiated to address this issue. Quantifying the flow of freshwater to the estuary is essential to assessing the effectiveness of these projects. The U.S. Geological Survey conducted a study between March 2006 and September 2010 to quantify the freshwater flowing under theTamiami Trail between County Road 92 and State Road 29 in southwest Florida, excluding the Faka Union Canal (which is monitored by South Florida Water Management District). The study period was after the completion of the Tamiami Trail Culverts Project and prior to most of the construction related to the Picayune Restoration Project. The section of the Tamiami Trail that was studied contains too many structures (35 bridges and 16 culverts) to cost-effectively measure each structure on a continuous basis, so the area was divided into seven subbasins. One bridge within each of the subbasins was instrumented with an acoustic Doppler velocity meter. The index velocity method was used to compute discharge at the seven instrumented bridges. Periodic discharge measurements were made at all structures, using acoustic Doppler current profilers at bridges and acoustic Doppler velocity meters at culverts. Continuous daily mean values of discharge for the uninstrumented structures were calculated on the basis of relations between the measured discharge at the uninstrumented stations and the discharge and stage at the instrumented bridge. Estimates of daily mean discharge are available beginning in 2006 or 2007 through September 2010 for all structures. Subbasin comparison is limited to water years 2008–2010. The Faka Union Canal contributed more than half (on average 60 percent) of the flow under the Tamiami Trail between State Road 29 and County Road 92 during water years 2008–2010. During water years 2008–2010, an average 9 percent of the flow through the study area came from west of the Faka Union Canal and an average 31 percent came from east of the Faka Union Canal. Flow data provided by this study serve as baseline information about the seasonal and spatial distribution of freshwater flow under the Tamiami Trail between County Road 92 and State Road 29, and study results provide data to evaluate restoration efforts.

Florida↗
USGS2015

Southern Salish Sea Habitat Map Series data catalog

In 2010, the U.S. Environmental Protection Agency, Region 10 initiated the Puget Sound Scientific Studies and Technical Investigations Assistance Program, which was designed to support research for implementing the Puget Sound Action Agenda. The Action Agenda was created because Puget Sound was designated as one of 28 estuaries of National Significance under section 320 of the Clean Water Act, and its overall goal is to restore the environment of the Puget Sound Estuary by 2020. The Southern Salish Sea Mapping Project was funded through the Assistance Program request for proposal process which also supports a large number of coastal-zone- and ocean-management issues, and includes the recommendations of the Marine Protected Areas Work Group to the Washington State Legislature. These recommendations include a Puget Sound and coast-wide marine conservation needs assessment, gap analysis of existing Marine Protected Areas and recommendations for action. Four areas with recently acquired National Ocean Service hydrographic data are included in the Southern Salish Sea Habitat Map Series (fig. 1), each to be published individually as USGS Open File Reports at a scale of 1:40,000. The map products display seafloor geoforms, substrate, and biotopes using the Coastal and Marine Ecological Classification Standard. This data catalog contains much of the data used to prepare the SIMs in the Southern Salish Sea Habitat Map Series. Other data that were used to prepare the maps were compiled from previously published sources (for example, sediment samples and seismic reflection profiles) and are not included in this data series.

Washington↗
USGS1998

Integrated Natural Resource Science Program, San Francisco Bay

The San Francisco Bay-Delta estuary and its watershed have been a focus of intense human activity and environmental impact since 1848 when gold was discovered in the foothills of California's Sierra Nevada mountains. As the estuary and its watershed continue to be changed by human activities, resource managers, environmental regulators, elected officials, and the public seek credible, unbiased scientific information about the factors related to observed changes in order to restore impaired species, habitats and ecological functions.

California↗
USGS1998

Computed discharges at five sites in lower Laguna Madre near Port Isabel, Texas, June 1997

The Texas Water Development Board (TWDB), Texas Parks and Wildlife Department (TPWD), and Texas Natural Resource Conservation Commission (TNRCC) are charged by the Texas Legislature with determining freshwater inflows required to maintain the ecological health of streams, bays, and estuaries in Texas. To determine required inflows, the three agencies collect data and conduct studies on the needs for freshwater inflows to estuaries. The TWDB uses estuarine hydrodynamic and conservativetransport computer models to predict the effects of altering freshwater inflows on estuarine circulation and salinity. To calibrate these models, a variety of water-quality and discharge data are needed.

Texas↗
USGS2016

Assessing wildlife benefits and carbon storage from restored and natural coastal marshes in the Nisqually River Delta: Determining marsh net ecosystem carbon balance

Working in partnership since 1996, the U.S. Fish and Wildlife Service and the Nisqually Indian Tribe have restored 902 acres of tidally influenced coastal marsh in the Nisqually River Delta (NRD), making it the largest estuary-restoration project in the Pacific Northwest to date. Marsh restoration increases the capacity of the estuary to support a diversity of wildlife species. Restoration also increases carbon (C) production of marsh plant communities that support food webs for wildlife and can help mitigate climate change through long-term C storage in marsh soils. In 2015, an interdisciplinary team of U.S. Geological Survey (USGS) researchers began to study the benefits of carbon for wetland wildlife and storage in the NRD. Our primary goals are (1) to identify the relative importance of the different carbon sources that support juvenile chinook ( Oncorhynchus tshawytscha ) food webs and contribute to current and historic peat formation, (2) to determine the net ecosystem carbon balance (NECB) in a reference marsh and a restoration marsh site, and (3) to model the sustainability of the reference and restoration marshes under projected sea-level rise conditions along with historical vegetation change. In this fact sheet, we focus on the main C sources and exchanges to determine NECB, including carbon dioxide (CO 2 ) uptake through plant photosynthesis, the loss of CO 2 through plant and soil respiration, emissions of methane (CH 4 ), and the lateral movement or leaching loss of C in tidal waters.

Washington↗
USGS2022

Connecticut and Landsat

Connecticut, the third-smallest State by land area, is the fourth most densely populated in the United States. Connecticut’s tightly packed cities serve as international hubs for the finance and insurance industries. These same urban enclaves host highly regarded institutions of higher learning, such as Yale, the University of Connecticut, and Quinnipiac and Wesleyan Universities. Yet Connecticut has surprisingly varied natural features. Its residents are never far from pristine environments that teem with wildlife and convey the sounds, scents, and scenery of the natural world. The Connecticut River, the longest in New England at 407 miles, cuts through the State’s center and drains into Long Island Sound, as do the Thames and Housatonic Rivers. Together, these rivers form an estuary spawning ground for hundreds of freshwater and saltwater aquatic species. North and east of the coastal lowlands that hug the estuary are the highlands of the Southern Taconic Range and the Berkshires. North and west of the coastline, smaller rivers and valleys weave through densely forested landscapes dotted with State parks and scenic lakes. Imagery from the U.S. Geological Survey Landsat archive, a trusted public resource with more than 50 years of worldwide Earth observations, provides a powerful tool for analyzing the interplay of human habitation and natural landscapes in Connecticut. Landsat data also offer land managers a critical information source for managing damage from invasive species and monitoring the local landscape effects of changing environmental conditions .

Connecticut↗
USGS2001

Selected data for sediment cores collected in Chesapeake Bay in 1996 and 1998

As part of a study of recent history of the Chesapeake Bay ecosystem, one- to eight- meter long sediment cores were obtained from the mesohaline section of the Chesapeake Bay between the mouths of the Potomac and Rhode Rivers. The sediments consist of three lithofacies: coarse-grained channel deposits, restricted-estuary sands and muds, and open-estuary muds. Water content, biogenic silica, magnetic susceptibility, trace metals, and nutrients (carbon, nitrogen, and their isotopes) were measured in the cores. Biogenic silica, trace-metal, and nutrient data provide a strong basis for discussing past primary productivity and water-column anoxia in the bay.

Cheapeake Bay↗
USGS2004

Gulf of Mexico Integrated Science - Tampa Bay Study - Data Information Management System (DIMS)

The Tampa Bay Integrated Science Study is an effort by the U.S. Geological Survey (USGS) that combines the expertise of federal, state and local partners to address some of the most pressing ecological problems of the Tampa Bay estuary. This project serves as a template for the application of integrated research projects in other estuaries in the Gulf of Mexico. Efficient information and data distribution for the Tampa Bay Study has required the development of a Data Information Management System (DIMS). This information system is being used as an outreach management tool, providing information to scientists, decision makers and the public on the coastal resources of the Gulf of Mexico.

Open-File Report↗