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At least 973 records · Page 54Linked to original sources

USGS2002

A review of bacterial methyl halide degradation: Biochemistry, genetics and molecular ecology

Methyl halide‐degrading bacteria are a diverse group of organisms that are found in both terrestrial and marine environments. They potentially play an important role in mitigating ozone depletion resulting from methyl chloride and methyl bromide emissions. The first step in the pathway(s) of methyl halide degradation involves a methyltransferase and, recently, the presence of this pathway has been studied in a number of bacteria. This paper reviews the biochemistry and genetics of methyl halide utilization in the aerobic bacteria Methylobacterium chloromethanicum CM4 T , Hyphomicrobium chloromethanicum CM2 T , Aminobacter strain IMB‐1 and Aminobacter strain CC495. These bacteria are able to use methyl halides as a sole source of carbon and energy, are all members of the α ‐Proteobacteria and were isolated from a variety of polluted and pristine terrestrial environments. An understanding of the genetics of these bacteria identified a unique gene ( cmuA ) involved in the degradation of methyl halides, which codes for a protein (CmuA) with unique methyltransferase and corrinoid functions. This unique functional gene, cmuA , is being used to develop molecular ecology techniques to examine the diversity and distribution of methyl halide‐utilizing bacteria in the environment and hopefully to understand their role in methyl halide degradation in different environments. These techniques will also enable the detection of potentially novel methyl halide‐degrading bacteria.

Environmental Microbiology↗

USGS2016

A microbial arsenic cycle in sediments of an acidic mine impoundment: Herman Pit, Clear Lake, California

The involvement of prokaryotes in the redox reactions of arsenic occurring between its +5 [arsenate; As(V)] and +3 [arsenite; As(III)] oxidation states has been well established. Most research to date has focused upon circum-neutral pH environments (e.g., freshwater or estuarine sediments) or arsenic-rich “extreme” environments like hot springs and soda lakes. In contrast, relatively little work has been conducted in acidic environments. With this in mind we conducted experiments with sediments taken from the Herman Pit, an acid mine drainage impoundment of a former mercury (cinnabar) mine. Due to the large adsorptive capacity of the abundant Fe(III)-rich minerals, we were unable to initially detect in solution either As(V) or As(III) added to the aqueous phase of live sediment slurries or autoclaved controls, although the former consumed added electron donors (i.e., lactate, acetate, hydrogen), while the latter did not. This prompted us to conduct further experiments with diluted slurries using the live materials from the first incubation as inoculum. In these experiments we observed reduction of As(V) to As(III) under anoxic conditions and reduction rates were enhanced by addition of electron donors. We also observed oxidation of As(III) to As(V) in oxic slurries as well as in anoxic slurries amended with nitrate. We noted an acid-tolerant trend for sediment slurries in the cases of As(III) oxidation (aerobic and anaerobic) as well as for anaerobic As(V) reduction. These observations indicate the presence of a viable microbial arsenic redox cycle in the sediments of this extreme environment, a result reinforced by the successful amplification of arsenic functional genes ( aioA , and arrA ) from these materials.

California↗

USGS2017

Distance and environmental difference in alpine plant communities

Differences in plant communities are a response to the abiotic environment, species interactions, and dispersal. The role of geographic distance relative to the abiotic environment is explored for alpine tundra vegetation from 319 plots of four regions along the Rocky Mountain cordillera in the USA. The site by species data were ordinated using nonmetric multidimensional scaling to produce dependent variables for use in best-subsets regression. For independent variables, observations of local topography and microtopography were used as environmental indicators. Two methods of including distance in studies of vegetation and environment are used and contrasted. The relative importance of geographic distance in accounting for the pattern of alpine tundra similarity indicates that location is a factor in plant community composition. Mantel tests provide direct correlations between difference and distance but have known weaknesses. Moran spatial eigenvectors used in regression based approaches have greater geographic specificity, but require another step, ordination, in creating a vegetation variable. While the spatial eigenvectors are generally preferable, where species–environment relations are weak, as seems to be the case for the alpine sites studied here, the fewer abstractions of the Mantel test may be useful.

Rocky Mountain cordillera↗

USGS2016

Vive la résistance: genome-wide selection against introduced alleles in invasive hybrid zones

Evolutionary and ecological consequences of hybridization between native and invasive species are notoriously complicated because patterns of selection acting on non-native alleles can vary throughout the genome and across environments. Rapid advances in genomics now make it feasible to assess locus-specific and genome-wide patterns of natural selection acting on invasive introgression within and among natural populations occupying diverse environments. We quantified genome-wide patterns of admixture across multiple independent hybrid zones of native westslope cutthroat trout and invasive rainbow trout, the world's most widely introduced fish, by genotyping 339 individuals from 21 populations using 9380 species-diagnostic loci. A significantly greater proportion of the genome appeared to be under selection favouring native cutthroat trout (rather than rainbow trout), and this pattern was pervasive across the genome (detected on most chromosomes). Furthermore, selection against invasive alleles was consistent across populations and environments, even in those where rainbow trout were predicted to have a selective advantage (warm environments). These data corroborate field studies showing that hybrids between these species have lower fitness than the native taxa, and show that these fitness differences are due to selection favouring many native genes distributed widely throughout the genome.

Proceedings of the Royal Society B: Biological Sci↗

USGS2019

Pleistocene glacial cycles drove lineage diversification and fusion in the Yosemite toad (Anaxyrus canorus)

Species endemic to alpine environments can evolve via steep ecological selection gradients between lowland and upland environments. Additionally, many alpine environments have faced repeated glacial episodes over the past two million years, fracturing these endemics into isolated populations. In this “glacial pulse” model of alpine diversification, cycles of allopatry and ecologically divergent glacial refugia play a role in generating biodiversity, including novel admixed (“fused”) lineages. We tested for patterns of glacial pulse lineage diversification in the Yosemite toad ( Anaxyrus [ Bufo ] canorus ), an alpine endemic tied to glacially influenced meadow environments. Using double‐digest RADseq on populations densely sampled from a portion of the species range, we identified nine distinct lineages with divergence times ranging from 18 to 724 thousand years ago (ka), coinciding with multiple Sierra Nevada glacial events. Three lineages have admixed origins, and demographic models suggest these fused lineages have persisted throughout past glacial cycles. Directionality indices supported the hypothesis that some lineages recolonized Yosemite from east of the ice sheet, whereas other lineages remained in western refugia. Finally, refugial niche reconstructions suggest that low‐ and high‐elevation lineages have convergently adapted to similar climatic niches. Our results suggest glacial cycles and refugia may be important crucibles of adaptive diversity across deep evolutionary time.

California↗

USGS2019

How characteristic is the species characteristic selection scale?

Aim The importance of framing investigations of organism–environment relationships to interpret patterns at relevant spatial scales is increasingly recognized. However, most research related to environmental relationships is single-scaled, implicitly or explicitly assuming that a “species characteristic selection scale” exists. We tested the premise that a single characteristic scale exists to understand species–environment relationships within species by asking (a) what are the characteristic scales of species’ relationships with environmental predictors, and (b) is within-species, cross-predictor consistency in characteristic scales a general phenomenon. Location Nebraska, USA. Time period 2016. Major taxa studied Birds. Methods We used data from 86 species at > 500 locations to build hierarchical N-mixture models relating species abundance to land cover variables. By incorporating Bayesian latent indicator scale selection, we identified the spatial scales that best explain species–environment relationships with each land cover predictor. We quantified the extent of cross-predictor consistency in characteristic scales, and contrasted this to the expectation given a single species’ characteristic scale. Results We found no evidence for a characteristic spatial scale explaining all abundance–environment relationships within species, rather we found substantial variation in scale-dependence across multiple environmental attributes. Furthermore, 33% of species displayed evidence of multiple important spatial scales within environmental attributes. Major conclusions Within species there is little evidence for a single characteristic scale of environmental relationships and considerable variation in species’ scale dependencies. Because species may respond to multiple environmental attributes at different spatial scales, or single environmental attributes at multiple scales, we caution against any unoptimized single-scale studies. Our results demonstrate that until a framework is developed to predict the scales at which species respond to environmental characteristics, multi-scale investigations must be performed to identify and account for multi-scale dependencies. Natural selection acting on species’ response to distinct environmental attributes, rather than natural selection acting on species’ perception of spatial scales per se, may have shaped patterns of scale dependency and is an area ripe for investigation.

Nebraska↗

USGS2019

Relevance of individual and environmental drivers of movement of Golden Eagles

An animal's movement is expected to be governed by an interplay between goals determined by its internal state and energetic costs associated with navigating through the external environment. Understanding this ecological process is challenging when an animal moves in two dimensions and even more difficult for birds that move in a third dimension. To understand the dynamic interaction between the internal state of an animal and the variable external environment, we evaluated hypotheses explaining association of different covariates of movement and the trade‐offs birds face as they make behavioural decisions in a fluctuating landscape. We used ~870 000 GPS telemetry data points collected from 68 Golden Eagles Aquila chrysaetos to test demographic, diel, topographic and meteorological hypotheses to determine (1) the probability that these birds would be in motion and (2), once in motion, their flight speed. A complex and sometimes interacting set of potential internal and external factors determined movement behaviour. There was good evidence that reproductive state, manifested as age, sex and seasonal effects, had a significant influence on the probability of being in motion and, to a lesser extent, on speed of motion. Likewise, movement responses to the external environment were often unexpectedly strong. These responses, to northness of slope, strength of orographic updraft and intensity of solar radiation, were regionally and temporally variable. In contrast to previous work showing the role of a single environmental factor in determining movement decisions, our analyses support the hypothesis that multiple factors simultaneously interact to influence animal movement. In particular they highlighted how movement is influenced by the interaction between the individual's internal reproductive state and the external environment, and that, of the environmental factors, topographic influences are often more relevant than meteorological influences in determining patterns of flight behaviour. Further disentangling of how these internal and externals states jointly affect movement will provide additional insights into the energetic costs of movement and benefits associated with achieving process‐driven goals.

California↗

USGS2009

Divergence in an obligate mutualism is not explained by divergent climatic factors

Adaptation to divergent environments creates and maintains biological diversity, but we know little about the importance of different agents of ecological divergence. Coevolution in obligate mutualisms has been hypothesized to drive divergence, but this contention has rarely been tested against alternative ecological explanations. Here, we use a well-established example of coevolution in an obligate pollination mutualism, Yucca brevifolia and its two pollinating yucca moths, to test the hypothesis that divergence in this system is the result of mutualists adapting to different abiotic environments as opposed to coevolution between mutualists. ??? We used a combination of principal component analyses and ecological niche modeling to determine whether varieties of Y. brevifolia associated with different pollinators specialize on different environments. ??? Yucca brevifolia occupies a diverse range of climates. When the two varieties can disperse to similar environments, they occupy similar habitats. ??? This suggests that the two varieties have not specialized on distinct habitats. In turn, this suggests that nonclimatic factors, such as the biotic interaction between Y. brevifolia and its pollinators, are responsible for evolutionary divergence in this system. ?? New Phytologist (2009).

New Phytologist↗

USGS2011

Hydrogeology, Chemical and Microbial Activity Measurement Through Deep Permafrost

Little is known about hydrogeochemical conditions beneath thick permafrost, particularly in fractured crystalline rock, due to difficulty in accessing this environment. The purpose of this investigation was to develop methods to obtain physical, chemical, and microbial information about the subpermafrost environment from a surface-drilled borehole. Using a U-tube, gas and water samples were collected, along with temperature, pressure, and hydraulic conductivity measurements, 420 m below ground surface, within a 535 m long, angled borehole at High Lake, Nunavut, Canada, in an area with 460-m-thick permafrost. Piezometric head was well above the base of the permafrost, near land surface. Initial water samples were contaminated with drill fluid, with later samples <40% drill fluid. The salinity of the non-drill fluid component was <20,000 mg/L, had a Ca/Na ratio above 1, with ??18O values ???5??? lower than the local surface water. The fluid isotopic composition was affected by the permafrost-formation process. Nonbacteriogenic CH4 was present and the sample location was within methane hydrate stability field. Sampling lines froze before uncontaminated samples from the subpermafrost environment could be obtained, yet the available time to obtain water samples was extended compared to previous studies. Temperature measurements collected from a distributed temperature sensor indicated that this issue can be overcome easily in the future. The lack of methanogenic CH4 is consistent with the high sulfate concentrations observed in cores. The combined surface-drilled borehole/U-tube approach can provide a large amount of physical, chemical, and microbial data from the subpermafrost environment with few, controllable, sources of contamination. ?? 2010 The Author(s). Journal compilation ?? 2010 National Ground Water Association.

Ground Water↗

USGS1990

Faults of the central part of the Lewis and Clark line and fragmentation of the Late Cretaceous foreland basin in west-central Montana

The Lewis and Clark line is a prominent zone of strike-slip, dip-slip, and oblique-slip faults that extends from near Wallace, Idaho, to east of Helena, Montana. Faults of this zone have been intermittently active from Middle Proterozoic to Holocene time, and because of numerous tectonic overprints, controversy continues about displacement directions and times of displacement along specific faults. Geologic mapping shows evidence that many principal faults of the Lewis and Clark line, such as the St. Marys-Helena Valley, Bald Butte, Ninemile, and Osburn faults, had right separation or slip that ranged between 28 and 11 km, and this displacement probably occurred during Late Cretaceous time. Other faults, such as the Elevation Mountain, Placer Creek, and Ranch Creek faults, have Late Cretaceous right separations that range between 8 and 3.2 km, and the Mount Sentinel fault zone has between 6.5 and 3 km of right separation of probable Late Cretaceous age. Subsidiary structures of the Lewis and Clark line postdate Paleozoic and Lower Cretaceous rocks and predate Late Cretaceous stocks at some places; subsidiary faults and folds that have age constraints have slip directions compatible with right slip along adjacent, principal faults. Sedimentation patterns of Lower and Upper Cretaceous rocks indicate that faults of the Lewis and Clark line fragmented the foredeep region of the foreland basin into separate northern and southern basins in Late Cretaceous time. The Lower and Upper Cretaceous Blackleaf Formation (Albian and lower Cenomanian) was deposited in a continuous foredeep basin that extended across the Lewis and Clark line from north of the Canadian border to southwestern Montana, a distance of about 450 km. North of the Lewis and Clark line, middle and upper Cenomanian rocks are absent, and a thin sequence of uppermost Cenomanian to Campanian rocks was deposited in a marine environment that changed to a strand-line and continental environment in early Campanian time. South of the Lewis and Clark line, middle and upper Cenomanian deposits are also absent, but a thick sequence of Turonian-to-Campanian rocks was deposited in brackish water and strand-line environments, and during later Campanian time, in a continental environment. In the region between the St. Marys-Helena Valley and Bald Butte faults, a barrier may have formed that served as a local sediment source between foredeep regions in the northern and southern foreland basin during the period 91 to 75 Ma. South of the Bald Butte fault, an extensional tectonic regime contributed to a higher sediment-accumulation rate in the foredeep region along the north border of the southern basin (30 cm/1,000 yr), as compared to lower sediment-accumulation rates (6.9 and 7.8 cm/ 1,000 yr) in the foredeep region of the south part of the northern basin.

Montana↗

USGS2011

Utah's geologic and geomorphic analogs to Mars—An overview for planetary exploration

Utah offers spectacular geologic features and valuable analog environments and processes for Mars studies. Horizontal strata of the Colorado Plateau are analogous to Mars because the overprint of plate tectonics is minimal, yet the effects of strong ground motion from earthquakes or impacts are preserved in the sedimentary record. The close proximity of analog environments and lack of vegetative cover are advantages for field and remote-sensing studies. Dry, desert climate and modern wind processes of Utah are comparable to Mars and its current surface. Analogs in Utah include eolian, sabkha and saline bodies, glacial, lacustrine, spring, alluvial, fluvial, delta, and outflow channel depositional environments, as well as volcanic landforms and impact craters. Analogous secondary processes producing modification features include: diagenetic concretions, weathering and soils, sinkholes, sapping, knobs and pinnacles, crusts and varnish, and patterned grounds. Utah's physical and chemical environments are analogous to conditions on Mars where water existed and could support microorganisms. The development of Mars includes: ancient and modern depositional records, burial and diagenesis, uplift and tectonic alteration, and modern sculpting or weathering of the surface exposures. Recent satellite images are providing unprecedented details that rival the outcrop scale. Analogs in Utah are prime field localities that can be utilized in planning future robotic and human missions to Mars, and for teaching the next generation of planetary explorers.

Utah↗

USGS2008

Rock magnetic characterization of faulted sediments with associated magnetic anomalies in the Albuquerque Basin, Rio Grande rift, New Mexico

Variations in rock magnetic properties are responsible for the many linear, short-wavelength, low-amplitude magnetic anomalies that are spatially associated with faults that cut Neogene basin sediments in the Rio Grande rift, including the San Ysidro normal fault, which is well exposed in the northern part of the Albuquerque Basin. Magnetic-susceptibility measurements from 310 sites distributed through a 1200-m-thick composite section of rift-filling sediments of the Santa Fe Group and prerift Eocene and Cretaceous sedimentary rocks document large variations of magnetic properties juxtaposed by the San Ysidro fault. Mean volume magnetic susceptibilities generally increase upsection through eight map units: from 1.7 to 2.2E-4 in the prerift Eocene and Cretaceous rocks to 9.9E-4-1.2E-3 in three members of the Miocene Zia Formation of the Santa Fe Group to 1.5E-3-3.5E-3 in three members of the Miocene-Pleistocene Arroyo Ojito Formation of the Santa Fe Group. Rock magnetic measurements and petrography indicate that the amount of detrital magnetite and its variable oxidation to maghemite and hematite within the Santa Fe Group sediments are the predominant controls of their magnetic property variations. Magnetic susceptibility increases progressively with sediment grain size within the members of the Arroyo Ojito Formation (deposited in fluvial environments) but within members of the Zia Formation (deposited in mostly eolian environments) reaches highest values in fine to medium sands. Partial oxidation of detrital magnetite is spatially associated with calcite cementation in the Santa Fe Group. Both oxidation and cementation probably reflect past flow of groundwater through permeable zones. Magnetic models for geologic cross sections that incorporate mean magnetic susceptibilities for the different stratigraphic units mimic the aeromagnetic profiles across the San Ysidro fault and demonstrate that the stratigraphic level of dominant magnetic contrast changes with different exposure levels into the fault. These data indicate that tectonic juxtaposition of primary variations of magnetic properties of strata across the fault is the source of the associated magnetic anomaly. This study indicates that magnetic anomalies over faults and folds can be generated by sediments (1) deposited within tectonic basins having volcanic or basement source areas rich in magnetite, (2) having depositional environments with sufficient but varying energy to transport dense magnetic minerals and cause stratigraphic changes of magnetic properties, and (3) having magnetic minerals preserved owing to their youth or nonreactive geochemical environments. ?? 2007 Geological Society of America.

Geological Society of America Bulletin↗

USGS2008

Environmental enrichment in steelhead (Oncorhynchus mykiss) hatcheries: Field evaluation of aggression, foraging, and territoriality in natural and hatchery fry

Reforms for salmonid hatcheries include production of hatchery fish with behavioral characteristics similar to wild conspecifics. Enrichment of the hatchery environment has been proposed to achieve this goal. Field experiments of steelhead (i.e., sea-run rainbow trout, Oncorhynchus mykiss) fry from a common stock reared under natural (i.e., stream), enriched hatchery, and conventional hatchery conditions indicated no significant differences in the rates of foraging or aggression between rearing treatments. However, the rates of foraging and aggression of natural fry were significantly affected by the type of hatchery fry stocked with them. Natural steelhead fry fed at lower rates and exhibited higher rates of aggression when stocked with steelhead fry raised in enriched hatchery environments. Territory sizes of steelhead fry ranged from 0.015 to 0.801 m2; were significantly, positively related to body length; and were not significantly different between rearing treatments. We conclude that hatchery steelhead fry released into streams establish territories that are proportional to their body length and similar in size to territories of natural steelhead fry. Our results indicate that both conventional and enriched hatchery environments produce natural social behaviors in steelhead released as fry and that fry from enriched hatchery environments may alter the foraging and aggressive behavior of natural, resident steelhead fry. ?? 2008 NRC.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2009

Exposure assessment of veterinary medicines in aquatic systems

The release of veterinary medicines into the aquatic environment may occur through direct or indirect pathways. An example of direct release is the use of medicines in aquaculture (Armstrong et al. 2005; Davies et al. 1998), where chemicals used to treat fish are added directly to water. Indirect releases, in which medicines make their way to water through transport from other matrices, include the application of animal manure to land or direct excretion of residues onto pasture land, from which the therapeutic chemicals may be transported into the aquatic environment (Jørgensen and Halling-Sørensen 2000; Boxall et al. 2003, 2004). Veterinary medicines used to treat companion animals may also be transported into the aquatic environment through disposal of unused medicines, veterinary waste, or animal carcasses (Daughton and Ternes 1999, Boxall et al. 2004). The potential for a veterinary medicine to be released to the aquatic environment will be determined by several different criteria, including the method of treatment, agriculture or aquaculture practices, environmental conditions, and the properties of the veterinary medicine.

Book chapter↗

USGS1981

Reservoir properties of submarine- fan facies: Great Valley sequence, California

Submarine-fan sandstones of the Great Valley sequence west of the Sacramento Valley, California, have low porosities and permeabilities (64 samples averaged 10.1% porosity and 0.87 millidarcies permeability). However, petrography and scanning electron microscope studies indicate that most sands in almost all submarine fan environments are originally porous and permeable. Thin turbidite sandstones deposited in areas dominated by shale in outer-fan, basin-plain, and overbank environments are cemented mainly by calcite; shale dewatering is inferred to contribute to rapid cementation early in the burial process. Sands deposited in inner- and middle-fan channels within interchannel and fan-fringe environments that contain only thin shale beds have small percentages of intergranular matrix or cement. The original porosity is substantially reduced mechanically at shallow depths and by pressure solution at deeper levels. Permeability decreases systematically with increasing age of the rocks, presumably as a result of increasing burial depths. Computer-run stepwise regression analyses show that the porosity is inversely related to the percentage of calcite cement. Such parameters as the contents of quartz, feldspar, and unstable rock fragments have no correlative effect on either porosity or permeability. The results reported here indicate original porosity and permeability can be high in deep-water submarine fans and that fan environments dominated by sand (with high sand/shale ratios) are more likely to retain higher porosity and permeability to greater depths than sand interbedded with thick shale sequences.

Journal of Sedimentary Petrology↗

USGS2002

Weak trophic interactions among birds, insects and white oak saplings (Quercus alba)

We examined the interactions among insectivorous birds, arthropods and white oak saplings ( Quercus alba L. ) in a temperate deciduous forest under 'open' and 'closed' canopy environments. For 2 y, we compared arthropod densities, leaf damage and sapling growth. Saplings from each canopy environment were assigned to one of four treatments: (1) reference, (2) bird exclosure, (3) insecticide and (4) exclosure + insecticide. Sap-feeding insects were the most abundant arthropod feeding guild encountered and birds reduced sap-feeder densities in 1997, but not in 1998. Although there was no detectable influence of birds on leaf-chewer densities in either year, leaf damage to saplings was greater within bird exclosures than outside of bird exclosures in 1997. Insecticide significantly reduced arthropod densities and leaf damage to saplings, but there was no corresponding increase in sapling growth. Growth and biomass were greater for saplings in more open canopy environments for both years. Sap-feeder densities were higher on closed canopy than open canopy saplings in 1997, but canopy environment did not influence the effects of birds on lower trophic levels. Although previous studies have found birds to indirectly influence plant growth and biomass, birds did not significantly influence the growth or biomass of white oak saplings during our study.

Arkansas↗

USGS1998

Effects of nutrient patches and root systems on the clonal plasticity of a rhizomatous grass

Clonal plant foraging has been examined primarily on individual clones exposed to resource-poor and resource-rich environments. We designed an experiment to examine the clonal foraging behavior of the rhizomatous grass Elymus lanceolatus ssp. lanceolatus under the influence of neighboring plant root systems in a heterogeneous nutrient environment. Individual Elymus clones were planted in large bins together with one of three neighboring grass species, Agropyron desertorum, Pseudoroegneria spicata, or Bromus tectorum, which differ in rooting density and growth activity. The position of Elymus clones was manipulated so rhizomes encountered a short-duration nutrient patch and subsequently root systems of the neighboring plants. Unexpectedly, the morphological plasticity of the perennial grass Elymus lanceolatus ssp. lanceolatus was influenced by the presence of the neighboring species much more than by the local nutrient enrichments, although nutrient patches did amplify some of the foraging responses. Elymus rhizomes branched readily and initiated large daughter plants as they encountered the low-density root systems of Pseudoroegneria. When Elymus encountered the fine, dense root systems of the annual Bromus, clonal expansion was initially reduced. Yet, after the short growing season of Bromus, Elymus resumed clonal expansion and produced several daughter plants. Elymus clones were most constrained by the fine, dense root systems of Agropyron desertorum. In this case, a few, long rhizomes avoided the densely rooted soil environment by growing aboveground as stolons crossing over the Agropyron tussocks. Elymus clonal biomass was largest in neighborhoods of Pseudoroegneria, intermediate in neighborhoods with Bromus, and smallest in neighborhoods with Agropyron. The latter were approximately half the size of those in the Pseudoroegneria environments. Elymus growth could not be explained by simple resource competition alone; other mechanisms must have been involved in the apparent differences in interference patterns of neighboring plants with Elymus.

Ecology↗

USGS2015

To predict the niche, model colonization and extinction

Ecologists frequently try to predict the future geographic distributions of species. Most studies assume that the current distribution of a species reflects its environmental requirements (i.e., the species' niche). However, the current distributions of many species are unlikely to be at equilibrium with the current distribution of environmental conditions, both because of ongoing invasions and because the distribution of suitable environmental conditions is always changing. This mismatch between the equilibrium assumptions inherent in many analyses and the disequilibrium conditions in the real world leads to inaccurate predictions of species' geographic distributions and suggests the need for theory and analytical tools that avoid equilibrium assumptions. Here, we develop a general theory of environmental associations during periods of transient dynamics. We show that time-invariant relationships between environmental conditions and rates of local colonization and extinction can produce substantial temporal variation in occupancy–environment relationships. We then estimate occupancy–environment relationships during three avian invasions. Changes in occupancy–environment relationships over time differ among species but are predicted by dynamic occupancy models. Since estimates of the occupancy–environment relationships themselves are frequently poor predictors of future occupancy patterns, research should increasingly focus on characterizing how rates of local colonization and extinction vary with environmental conditions.

Ecology↗