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USGS2004

Determinants of reproductive costs in the long-lived Black-legged Kittiwake: A multiyear experiment

We studied reproductive costs of Black-legged Kittiwakes ( Rissa tridactyla ) in Prince William Sound, Alaska (USA) by removing entire clutches from randomly selected nests over four successive years, and then contrasting survival and fecundity of adults from manipulated and unmanipulated nests in each subsequent year. To elucidate mechanisms that lead to the expression of reproductive costs, we simultaneously characterized several behavioral and physiological parameters among adults in the two treatment groups. We also examined naturally nonbreeding adults that previously bred to determine their survival and future nonbreeding probabilities. Food availability varied during the study, being generally poor at the onset, and improving in later years. Adult nest attendance and body condition (assessed late in the chick- rearing period) varied accordingly among years, and between adults raising chicks and adults that had their eggs removed. Adults from unmanipulated nests incurred significant survival costs in all years, although fecundity costs were strongly expressed in only one of four years. Neither survival nor fecundity costs were strongly influenced by body condition or food availability, and no difference in reproductive costs was detected between the sexes. Although unmanipulated breeders survived at lower rates than manipulated breeders due to costs of reproduction, their survival rates were elevated compared to those of natural nonbreeders, presumably due to differences in individual ability. These findings indicate that models of adult survival must consider not only an organism's reproductive state, but also the factors that lead to that state. Although body condition appeared to be weakly related to survival, it was insufficient to explain the full magnitude of survival costs observed. We suggest that other parameters that were found to differ between treatment groups (e.g., rates of energy turnover, baseline levels of stress, and patterns of allocating body reserves) may be important mechanistic determinants of reproductive costs in kittiwakes, and potentially other long-lived species. Future efforts should move beyond simple assessments of body condition and toward more integrated measures of physiological condition when attempting to identify factors that influence how long-lived species balance the costs and benefits of reproduction.

Alaska↗

USGS2021

Risky movements? Natal dispersal does not decrease survival of a large herbivore

Natal dispersal is assumed to be a particularly risky movement behavior as individuals transfer, often long distances, from birth site to site of potential first reproduction. Though, because this behavior persists in populations, it is assumed that dispersal increases the fitness of individuals despite the potential for increased risk of mortality. The extent of dispersal risk, however, has rarely been tested, especially for large mammals. Therefore, we aimed to test the relationship between dispersal and survival for both males and females in a large herbivore. Using a radio-transmittered sample of 398 juvenile male and 276 juvenile female white-tailed deer ( Odocoileus virginianus) , we compared survival rates of dispersers and non-dispersers. We predicted that dispersing deer would experience greater overall mortality than philopatric deer due to direct transfer-related risks (e.g., vehicular collision), indirect immigration-related mortality attributable to colonization of unfamiliar habitat, and increased over-winter mortality associated with energetic costs of movement and unfamiliarity with recently colonized habitat. For both male and female yearlings, survival rates of dispersers (male = 49.9%, female = 64.0%) did not differ from non-dispersers (male = 51.6%, female = 70.7%). Only two individuals (both female) were killed by vehicular collision during transfer, and over-winter survival patterns were similar between the two groups. Although dispersal movement likely incurs energetic costs on dispersers, these costs do not necessarily translate to decreased survival. In many species, including white-tailed deer, dispersal is likely condition-dependent, such that larger and healthier individuals are more likely to disperse; therefore, costs associated with dispersal are more likely to be borne successfully by those individuals that do disperse. Whether low-risk dispersal of large mammals is the rule or the exception will require additional research. Further, future research is needed to evaluate non-survival fitness-related costs and benefits of dispersal (e.g., increased reproductive opportunities for dispersers).

Pennsylvania↗

USGS2021

Dynamic selection for forage quality and quantity in response to phenology and insects in an Arctic ungulate

Spatiotemporal variation in forage is a primary driver of ungulate behavior, yet little is known about the nutritional components they select, and how selection varies across the growing season with changes in forage quality and quantity. We addressed these uncertainties in barren-ground caribou ( Rangifer tarandus ), which experience their most important foraging opportunities during the short Arctic summer. Recent declines in Arctic caribou populations have raised concerns about the influence of climate change on summer foraging opportunities, given shifting vegetation conditions and insect harassment, and their potential effects on caribou body condition and demography. We examined Arctic caribou selection of summer forage by pairing locations from females in the Central Arctic Herd of Alaska with spatiotemporal predictions of biomass, digestible nitrogen (DN), and digestible energy (DE). We then assessed selection for these nutritional components across the growing season at landscape and patch scales, and determined whether foraging opportunities were constrained by insect harassment. During early summer, at the landscape scale, caribou selected for intermediate biomass and high DN and DE, following expectations of the forage maturation hypothesis. At the patch scale, however, caribou selected for high values of all forage components, particularly DN, suggesting that protein may be limiting. During late summer, after DN declined below the threshold for protein gain, caribou exhibited a switch at both spatial scales, selecting for higher biomass, likely enabling mass and fat deposition. Mosquito activity strongly altered caribou selection of forage and increased their movement rates, while oestrid fly activity had little influence. Our results demonstrate that early and late summer periods afford Arctic caribou distinct foraging opportunities, as they prioritize quality earlier in the summer and quantity later. Climate change may further constrain caribou access to DN as earlier, warmer Arctic summers may be associated with reduced DN and increased mosquito harassment.

Alaska↗

USGS2022

Machine learned daily life history classification using low frequency tracking data and automated modelling pipelines: Application to North American waterfowl

Background Identifying animal behaviors, life history states, and movement patterns is a prerequisite for many animal behavior analyses and effective management of wildlife and habitats. Most approaches classify short-term movement patterns with high frequency location or accelerometry data. However, patterns reflecting life history across longer time scales can have greater relevance to species biology or management needs, especially when available in near real-time. Given limitations in collecting and using such data to accurately classify complex behaviors in the long-term, we used hourly GPS data from 5 waterfowl species to produce daily activity classifications with machine-learned models using “automated modelling pipelines”. Methods Automated pipelines are computer-generated code that complete many tasks including feature engineering, multi-framework model development, training, validation, and hyperparameter tuning to produce daily classifications from eight activity patterns reflecting waterfowl life history or movement states. We developed several input features for modeling grouped into three broad categories, hereafter “feature sets”: GPS locations, habitat information, and movement history. Each feature set used different data sources or data collected across different time intervals to develop the “features” (independent variables) used in models. Results Automated modelling pipelines rapidly developed easily reproducible data preprocessing and analysis steps, identification and optimization of the best performing model and provided outputs for interpreting feature importance. Unequal expression of life history states caused unbalanced classes, so we evaluated feature set importance using a weighted F1-score to balance model recall and precision among individual classes. Although the best model using the least restrictive feature set (only 24 hourly relocations in a day) produced effective classifications (weighted F1 = 0.887), models using all feature sets performed substantially better (weighted F1 = 0.95), particularly for rarer but demographically more impactful life history states (i.e., nesting). Conclusions Automated pipelines generated models producing highly accurate classifications of complex daily activity patterns using relatively low frequency GPS and incorporating more classes than previous GPS studies. Near real-time classification is possible which is ideal for time-sensitive needs such as identifying reproduction. Including habitat and longer sequences of spatial information produced more accurate classifications but incurred slight delays in processing.

Movement Ecology↗

USGS2021

Secretive marsh bird habitat associations in the Mississippi Flyway: A meta-analysis

Secretive marsh birds, including rails and bitterns, have experienced widespread population declines due to the loss of wetland habitat on which they depend. Because of their cryptic behavior, secretive marsh birds are challenging to study and information on their habitat requirements is limited, especially across the full annual cycle. Quantifying habitat associations throughout the annual cycle and at broad geographic scales can advance a more comprehensive approach for secretive marsh bird conservation. The goal of this study was to quantitatively synthesize results from empirical studies that examined species-habitat relationships of secretive marsh birds in the North American Mississippi Flyway to identify general patterns and information gaps that can guide future management and conservation efforts. We performed a meta-analysis and incorporated results from 40 studies that quantitatively assessed habitat associations of American Bittern ( Botaurus lentiginosus ), Least Bittern ( Ixobrychus exilis ), King Rail ( Rallus elegans ), Sora ( Porzana carolina ), Virginia Rail ( Rallus limicola ), and Yellow Rail ( Coturnicops noveboracensis ). Most studies examined breeding season habitat, whereas only 13% reported on habitat use during migration and none during winter. At landscape scales, breeding marsh birds were positively associated with amount of wetlands, especially in the Great Lakes region, and negatively associated with amount of urban land cover, particularly for American Bittern. At the local scale, breeding marsh birds were positively associated with cattail coverage ( Typha spp) and other robust emergent vegetation. Overall, marsh birds were negatively associated with woody wetland vegetation, although effects were weaker in the Prairie region and varied among species. During autumn migration, moist-soil vegetation coverage was important for rails in the lower Midwest. The habitat use patterns we identified across studies provide a general characterization of marsh bird breeding habitat to aid in landscape-level multi-species conservation efforts. Our study also highlights the immediate research needs for full annual cycle conservation of secretive marsh bird habitat in North America: specifically, information during winter and migration.

Avian Conservation and Ecology↗

USGS2010

Fuel deposition rates of montane and subalpine conifers in the central Sierra Nevada, California, USA

Fire managers and researchers need information on fuel deposition rates to estimate future changes in fuel bed characteristics, determine when forests transition to another fire behavior fuel model, estimate future changes in fuel bed characteristics, and parameterize and validate ecosystem process models. This information is lacking for many ecosystems including the Sierra Nevada in California, USA. We investigated fuel deposition rates and stand characteristics of seven montane and four subalpine conifers in the Sierra Nevada. We collected foliage, miscellaneous bark and crown fragments, cones, and woody fuel classes from four replicate plots each in four stem diameter size classes for each species, for a total of 176 sampling sites. We used these data to develop predictive equations for each fuel class and diameter size class of each species based on stem and crown characteristics. There were consistent species and diameter class differences in the annual amount of foliage and fragments deposited. Foliage deposition rates ranged from just over 50 g m -2 year -1 in small diameter mountain hemlock stands to ???300 g m -2 year -1 for the three largest diameter classes of giant sequoia. The deposition rate for most woody fuel classes increased from the smallest diameter class stands to the largest diameter class stands. Woody fuel deposition rates varied among species as well. The rates for the smallest woody fuels ranged from 0.8 g m -2 year -1 for small diameter stands of Jeffrey pine to 126.9 g m -2 year -1 for very large diameter stands of mountain hemlock. Crown height and live crown ratio were the best predictors of fuel deposition rates for most fuel classes and species. Both characteristics reflect the amount of crown biomass including foliage and woody fuels. Relationships established in this study allow predictions of fuel loads to be made on a stand basis for each of these species under current and possible future conditions. These predictions can be used to estimate fuel treatment longevity, assist in determining fuel model transitions, and predict future changes in fuel bed characteristics.

Forest Ecology and Management↗

USGS2021

Upwelling and the persistence of coral-reef frameworks in the eastern tropical Pacific

In an era of global change, the fate and form of reef habitats will depend on shifting assemblages of organisms and their responses to multiple stressors. Multiphyletic assemblages of calcifying and bioeroding species contribute to a dynamic balance between constructive and erosive processes, and reef-framework growth occurs only when calcium-carbonate deposition exceeds erosion. Each contributing species exhibits a unique combination of environmental sensitivities, trophic needs, and competitive abilities, making the net outcome of their habitat-altering behavior difficult to predict. In this study, standardized blocks of clean, massive Porites were placed at six reef sites in the eastern tropical Pacific, in the strongly and more-weakly upwelling Gulfs of Panamá (GoP) and Chiriquí (GoC), respectively. Sites were chosen to characterize the unique thermal and carbonate-chemistry conditions of each gulf. Satellite products were used to examine differences in sea-surface productivity, and surveys were conducted to quantify the abundance of important grazing taxa. After two years in situ, the Porites blocks were collected and scanned using high-resolution computed tomography to volumetrically quantify both endolithic and epilithic habitat alteration. Scan-volumes were further classified into functional groups according to morphology to quantify external bioerosion by fish and sea urchins, as well as the calcifying and bioeroding activity of crustose coralline algae, scleractinian corals, mollusks, annelids, and barnacles. The GoP, which has higher productivity, cooler temperatures, and periodically lower pH conditions, had higher rates of macroboring, but also higher rates of calcification. These unexpectedly higher rates of calcification in the GoP were a result of high recruitment of suspension-feeding taxa, particularly barnacles and vermiform fauna that have poor reef-forming potential. External bioerosion by grazers was the dominant process influencing these dead coral substrates across both gulfs, contributing to higher rates of net erosion in the GoC and underscoring the important roles that urchins and fish play in not just removing algae on reefs, but also eroding reef habitat. Ultimately these findings reveal that the trophic requirements of habitat-altering taxa are closely tied to reef-framework stability, and that environmental conditions conducive to carbonate precipitation are not necessarily those that will lead to habitat persistence.

Ecological Monographs↗

USGS2019

Operationalizing resilience and resistance concepts to address invasive grass-fire cycles

Plant invasions can affect fuel characteristics, fire behavior, and fire regimes resulting in invasive plant-fire cycles and alternative, self-perpetuating states that can be difficult, if not impossible, to reverse. Concepts related to general resilience to disturbance and resistance to invasive plants provide the basis for managing landscapes to increase their capacity to reorganize and adjust following fire, while concepts related to spatial resilience provide the basis for managing landscapes to conserve resources and habitats and maintain connectivity. New, spatially explicit approaches and decision-tools enable managers to understand and evaluate general and spatial resilience to fire and resistance to invasive grasses across large landscapes in arid and semi-arid shrublands and woodlands. These approaches and tools provide the capacity to locate management actions strategically to prevent development of invasive grass-fire cycles and maintain or improve resources and habitats. In this review, we discuss the factors that influence fire regimes, general and spatial resilience to fire, resistance to invasive annual grasses, and thus invasive grass-fire cycles in global arid and semi-arid shrublands and woodlands. The Cold Deserts, Mediterranean Ecoregion, and Warm Deserts of North America are used as model systems to describe how and why resilience to disturbance and resistance to invasive annuals differ over large landscapes. The Cold Deserts are used to illustrate an approach and decision tools for prioritizing areas on the landscape for management actions to prevent development of invasive grass-fire cycles and protect high value resources and habitats and for determining effective management strategies. The concepts and approach herein represent a paradigm shift in the management of these ecosystems, which allows managers to use geospatial tools to identify resilience to disturbance and resistance to invasive plants in order to target conservation and restoration actions where they will provide the greatest benefits.

Frontiers in Ecology and Evolution↗

USGS2016

Passage of downstream migrant American eels through an airlift-assisted deep bypass

Traditional downstream guidance and bypass facilities for anadromous fishes (i.e., surface bypasses, surface guidance structures, and behavioral barriers) have frequently been ineffective for anguillid eels. Because eels typically spend the majority of their time near the bottom in the vicinity of intake structures, deep bypass structures with entrances near the bottom hold promise for increased effectiveness, thereby aiding in the recovery of this important species. A new design of a deep bypass system that uses airlift technology (the Conte Airlift Bypass) to induce flow in a bypass pipe was tested in a simulated intake entrance environment under controlled laboratory conditions. Water velocities of 0.9–1.5 m s −1 could be generated at the bypass entrance (opening with 0.073 m 2 area), with corresponding flows through the bypass pipe of 0.07–0.11 m 3 s −1 . Gas saturation and hydrostatic pressure within the bypass pipe did not vary appreciably from a control (no air) condition under tested airflows. Migratory silver-phase American eels ( Anguilla rostrata ) tested during dark conditions readily located, entered, and passed through the bypass; initial avoidance rates (eels approaching but not entering the bypass entrance) were lower at higher entrance velocities. Eels that investigated the bypass pipe entrance tended to enter headfirst, but those that then exited the pipe upstream did so more frequently at lower entrance velocities. Eels appeared to swim against the flow while being transported downstream through the pipe; median transit times through the bypass for each test velocity ranged from 5.8 to 12.2 s, with transit time decreasing with increasing entrance velocity. Eels did not show strong avoidance of the vertical section of the pipe which contained injected air. No mortality or injury of bypassed eels was observed, and individual eels repeatedly passed through the bypass at rates of up to 40 passes per hour, suggesting that individuals do not avoid repeated entrainment through the bypass. Airlift technology appears to be a viable method for increasing passage effectiveness for American eels through a deep bypass system.

Ecological Engineering↗

USGS2022

Stochastic agent-based model for predicting turbine-scale raptor movements during updraft-subsidized directional flights

Rapid expansion of wind energy development across the world has highlighted the need to better understand turbine-caused avian mortality. The risk to golden eagles ( Aquila chrysaetos ) is of particular concern due to their small population size and conservation status. Golden eagles subsidize their flight in part by soaring in orographic updrafts, which can place them in conflict with wind turbines utilizing the same low-altitude wind resource. Understanding the behavior of soaring raptors in varying atmospheric conditions can therefore be relevant to predicting and mitigating their risk of collision. We present a predictive movement model that simulates individual paths of golden eagles during directional flight (such as migration) that is subsidized by orographic updraft. We modeled eagles in a 50 km by 50 km study area in Wyoming containing three wind power plants with documented golden eagle collisions with turbines. The movement model is applicable to any region where ground elevation is known at turbine scale ( < "> < 50 m) and wind conditions are known at facility scale ( < "> < 3 km). For a given set of atmospheric conditions, the model simulates movements of thousands of orographic soaring eagles to produce a density map quantifying the relative probability of eagle presence. We validated the simulated tracks with GPS telemetry data showing four directional tracks made by golden eagles transiting through the area in 2019 and 2020. For each eagle track, validation was performed using the ratio of the model-simulated eagle presence likelihood with uniform eagle presence and the presence computed using directed random-walk movements. We found that the predictive performance of the model was significantly better (likelihood ratio > "> > 1) for low-altitude movements than high-altitude movements that can involve thermal-soaring. We employed the model to produce seasonal presence maps for migrating golden eagles. We found significant turbine-level variations in eagle presence between northerly and southerly migration routes through the study area. Overall, the proposed model offers a generalizable, probabilistic, and predictive tool to assist wind energy developers, ecologists, wildlife managers, and industry consultants in estimating the potential for conflict between soaring birds and wind turbines, thereby reducing the need for site-specific data on golden eagle movements.

Wyoming↗

USGS2014

Bird migration and avian influenza: a comparison of hydrogen stable isotopes and satellite tracking methods

Satellite-based tracking of migratory waterfowl is an important tool for understanding the potential role of wild birds in the long-distance transmission of highly pathogenic avian influenza. However, employing this technique on a continental scale is prohibitively expensive. This study explores the utility of stable isotope ratios in feathers in examining both the distances traveled by migratory birds and variation in migration behavior. We compared the satellite-derived movement data of 22 ducks from 8 species captured at wintering areas in Bangladesh, Turkey, and Hong Kong with deuterium ratios (δD) in the feathers of these and other individuals captured at the same locations. We derived likely molting locations from the satellite tracking data and generated expected isotope ratios based on an interpolated map of δD in rainwater. Although δD was correlated with the distance between wintering and molting locations, surprisingly, measured δD values were not correlated with either expected values or latitudes of molting sites. However, population-level parameters derived from the satellite-tracking data, such as mean distance between wintering and molting locations and variation in migration distance, were reflected by means and variation of the stable isotope values. Our findings call into question the relevance of the rainfall isotope map for Asia for linking feather isotopes to molting locations, and underscore the need for extensive ground truthing in the form of feather-based isoscapes. Nevertheless, stable isotopes from feathers could inform disease models by characterizing the degree to which regional breeding populations interact at common wintering locations. Feather isotopes also could aid in surveying wintering locations to determine where high-resolution tracking techniques (e.g. satellite tracking) could most effectively be employed. Moreover, intrinsic markers such as stable isotopes offer the only means of inferring movement information from birds that have died as a result of infection. In the absence of feather based-isoscapes, we recommend a combination of isotope analysis and satellite-tracking as the best means of generating aggregate movement data for informing disease models.

Ecological Indicators↗

USGS2002

Parasite (Ribeiroia ondatrae) infection linked to amphibian malformations in the western United States

Parasites and pathogens can influence the survivorship, behavior, and very structure of their host species. For example, experimental studies have shown that trematode parasites can cause high frequencies of severe limb malformations in amphibians. In a broad-scale field survey covering parts of California, Oregon, Washington, Idaho, and Montana, we examined relationships between the frequency and types of morphological abnormalities in amphibians and the abundance of trematode parasite infection, pH, concentrations of 61 pesticides, and levels of orthophosphate and total nitrate. We recorded severe malformations at frequencies ranging from 1% to 90% in nine amphibian species from 53 aquatic systems. Infection of larvae by the trematode Ribeiroia ondatrae was associated with, and functionally related to, higher frequencies of amphibian limb malformations than found in uninfected populations (≤5%). Parasites were concentrated around the basal tissue of hind limbs in infected anurans, and malformations associated with infection included skin webbings, supernumerary limbs and digits, and missing or malformed hind limbs. In the absence of Ribeiroia, amphibian populations exhibited low (0-5%) frequencies of abnormalities involving missing digits or distal portions of a hind limb. Species were affected differentially by the parasite, and Ambystoma macrodactylum, Hyla regilla, Rand aurora, R. luteiventris, and Taricha torosa typically exhibited the highest frequencies of abnormalities. None of the water-quality variables measured was associated with malformed amphibians, but aquatic snail hosts (Planorbella spp.) were significant predictors of the presence and abundance of Ribeiroia infection. Morphological comparisons of adult specimens of Ribeiroia collected from different sites and raised in experimental definitive hosts suggested that all samples represented the same species - R. ondatrae. These field results, coupled with experimental research on the effects of Ribeiroia on amphibians, demonstrate that Ribeiroia infection is an important and widespread cause of amphibian limb malformations in the western United States. The relevance of trematode infection to declines of amphibian populations and the influence of habitat modification on the pathology and life cycle of Ribeiroia are emphasized as areas requiring further research.

Ecological Monographs↗

USGS2025

Mammalian predator co‐occurrence affected by prey and habitat more than competitor presence at multiple time scales

The behavior and abundance of sympatric predators can be affected by a complex dominance hierarchy. The strength of antagonistic interactions in predator communities is difficult to study and remains poorly understood for many predator assemblages. Predators directly and indirectly influence the broader ecosystem, so identifying the relative importance of competition, prey, and habitat in shaping predator interactions has broad conservation and management implications. We investigated space use among five predator species (black bear [ Ursus americanus ], bobcat [ Lynx rufus ], coyote [ Canis latrans ], mountain lion [ Puma concolor ], and gray wolf [ Canis lupus ]) across three temporal scales in northern Idaho, USA. We used camera trap data to test whether potentially subordinate predators spatially avoided dominant predators and how prey availability influenced those relationships. We found few instances of subordinate predators spatially avoiding dominant predators and only at the finest temporal scale of our analyses. Instead, habitat features generally influenced predator space use patterns at coarser scales whereas prey and competitor presence influenced space use patterns at finer scales. Co-occurrence was positively associated between coyotes and bobcats at coarser timescales and between mesopredators and apex predators at finer timescales. Bobcats and mountain lions temporarily delayed the use of sites recently visited by coyotes and black bears, respectively. And all predator species used sites sooner following the detection of a competitor in areas with higher relative abundances of prey (primarily white-tailed deer [ Odocoileus virginianus ]). Our results suggest attraction to shared habitats and prey resources influenced space use in the predator community more than avoidance of competitors. We propose that the effects of interspecific interactions on predator distributions were most evident for mesopredators because their trophic position requires balancing risks and rewards associated with prey, apex predators, and other mesopredators. In addition, relatively high densities of a common prey source likely facilitated the spatial coexistence in this predator community. Our study demonstrates the value of simultaneously assessing multiple interspecific interactions across different spatiotemporal scales to discern relationships within the predator guild.

Idaho↗

USGS2015

Testing assumptions for conservation of migratory shorebirds and coastal managed wetlands

Managed wetlands provide critical foraging and roosting habitats for shorebirds during migration; therefore, ensuring their availability is a priority action in shorebird conservation plans. Contemporary shorebird conservation plans rely on a number of assumptions about shorebird prey resources and migratory behavior to determine stopover habitat requirements. For example, the US Shorebird Conservation Plan for the Southeast-Caribbean region assumes that average benthic invertebrate biomass in foraging habitats is 2.4 g dry mass m −2 and that the dominant prey item of shorebirds in the region is Chironomid larvae. For effective conservation and management, it is important to test working assumptions and update predictive models that are used to estimate habitat requirements. We surveyed migratory shorebirds and sampled the benthic invertebrate community in coastal managed wetlands of South Carolina. We sampled invertebrates at three points in time representing early, middle, and late stages of spring migration, and concurrently surveyed shorebird stopover populations at approximately 7-day intervals throughout migration. We used analysis of variance by ranks to test for temporal variation in invertebrate biomass and density, and we used a model based approach (linear mixed model and Monte Carlo simulation) to estimate mean biomass and density. There was little evidence of a temporal variation in biomass or density during the course of spring shorebird migration, suggesting that shorebirds did not deplete invertebrate prey resources at our site. Estimated biomass was 1.47 g dry mass m −2 (95 % credible interval 0.13–3.55), approximately 39 % lower than values used in the regional shorebird conservation plan. An additional 4728 ha (a 63 % increase) would be required if habitat objectives were derived from biomass levels observed in our study. Polychaetes, especially Laeonereis culveri (2569 individuals m −2 ), were the most abundant prey in foraging habitats at our site. Polychaetes have lower caloric content than levels assumed in the regional plan; when lower caloric content and lower biomass levels are used to determine habitat objectives, an additional 6395 ha would be required (86 % increase). Shorebird conservation and management plans would benefit from considering the uncertainty in parameters used to derive habitat objectives, especially biomass and caloric content of prey resources. Iterative testing of models that are specific to the planning region will provide rapid advances for management and conservation of migratory shorebirds and coastal managed wetlands.

Wetlands Ecology and Management↗

USGS2012

Short-term impacts of a 4-lane highway on black bears in eastern North Carolina

Among numerous anthropogenic impacts on terrestrial landscapes, expanding transportation networks represent one of the primary challenges to wildlife conservation worldwide. Larger mammals may be particularly vulnerable because of typically low densities, low reproductive rates, and extensive movements. Although numerous studies have been conducted to document impacts of road networks on wildlife, inference has been limited because of experimental design limitations. During the last decade, the North Carolina Department of Transportation (NCDOT) rerouted and upgraded sections of United States Highway 64 between Raleigh and the Outer Banks to a 4-lane, divided highway. A new route was selected for a 24.1-km section in Washington County. The new section of highway included 3 wildlife underpasses with adjacent wildlife fencing to mitigate the effects of the highway on wildlife, particularly American black bears (Ursus americanus). We assessed the short-term impacts of the new highway on spatial ecology, population size, survival, occupancy, and gene flow of black bears. We tested our research hypotheses using a before-after control-impact (BACI) study design. We collected data during 2000–2001 (preconstruction phase) and 2006–2007 (postconstruction phase) in the highway project area and a nearby control area (each approx. 11,000 ha), resulting in 4 groups of data (i.e., pre- or postconstruction study phase, treatment or control area). We captured and radiocollared 57 bears and collected 5,775 hourly locations and 4,998 daily locations. Using mixed-model analysis of variance and logistic regression, we detected no differences in home ranges, movement characteristics, proximity to the highway alignment, or habitat use between the 2 study phases, although minimum detectable effect sizes were large for several tests. However, after completion of the new highway, bears on the treatment area became less inactive in morning, when highway traffic was low, compared with bears on the control area (F 1, 43 = 6.05, P = 0.018). We used DNA from hair samples to determine if population size and site occupancy decreased following highway construction. For each study phase, we collected black bear hair from 70 hair snares on each study area during 7 weekly sampling periods and generated genotypes using 10 microsatellite loci. We used the multilocus genotypes to obtain capture histories for 226 different bears and used capture-mark-recapture models to estimate population size. Model-averaged estimates of population size decreased on the treatment area from 87.7 bears before construction to 31.6 bears after construction (64% reduction) and on the control area from 163.6 bears to 108.2 bears (34% reduction). Permutation procedures indicated this reduction was proportionally greater for the treatment area (P = 0.086). We also applied a spatially explicit capture-recapture technique to test our research hypothesis. The model with the most support indicated a greater change in density on the treatment area (69% reduction) compared with the control area (24% reduction). We did not observe a treatment effect based on survival of radiocollared bears. We used bear visits to hair snares as detections in multi-season occupancy models and found that occupancy decreased more on the treatment area (preconstruction: Ψ = 0.84; postconstruction: Ψ = 0.44; 48% decline) than the control area (preconstruction: Ψ = 0.91; postconstruction: Ψ = 0.81; 11% decline), primarily as a function of a greater probability of site extinctions (ε) on the treatment area (ε = 0.57) than the control area (ε = 0.17). Finally, individual- and population-based analyses of contemporary gene flow did not indicate the highway was a barrier to movements. Black bear use of the 3 wildlife underpasses was infrequent (17 verified crossings based on remote cameras, track surveys, and telemetry). Only 4 of 8 bears with home ranges near the highway were documented crossing the highway (n = 36 crossings), of which 2 were killed in vehicle collisions. Six additional bears were killed in vehicle collisions from May 2007 to November 2008, after we completed field work. Harvest data indicated that hunting mortality alone could explain the population decline on the control area. On the treatment area, however, hunting mortality only accounted for an approximately 40% population decline; the additional 30% decline we observed likely was caused by other mortality. We speculate vehicle collisions were primarily responsible. We conclude that impacts of the new highway on resident black bears occurred at the population level, rather than the individual or genetic level, but that the impact was smaller than harvest mortality. Increased activity by remaining bears when traffic volumes were low indicated behavioral plasticity. Bear use of the underpasses seemed sufficient to maintain gene flow between areas north and south of the new highway. Effectiveness of wildlife underpasses to reduce mortality of black bears may be enhanced if mitigation includes continuous fencing between crossing structures. For small, isolated populations of threatened or endangered large mammals, the potential demographic impacts of highways are an essential consideration in the transportation planning process. Control of mortality factors and maintaining demographic connectivity are particularly important.

California↗

USGS2026

Evaluating evidence of changing regional occupancy of four bat species in response to forest management practices

Coordinated, regional strategies to guide effective management and conservation of forests can be used to balance conservation with management for other objectives such as timber, scenic viewsheds, and fire. A key part of these regional strategies is incorporating knowledge of how management actions may affect certain species, especially those that are sensitive or are of concern. However, knowledge of how management actions may affect species is inferred from studies conducted across small areas where the species’ behavior and forest conditions are easily assessed. Here, we examine how occupancy of four bat species responds to forest management across the eastern United States at regional scales. We used range-wide capture and stationary acoustic surveys from the North American Bat Monitoring Program from 2010 to 2020 to estimate yearly summer occupancy for four bat species of conservation concern identified in the U.S. Department of Agriculture Forest Service (USFS) Southern and Eastern Regions Bat Conservation Strategy: little brown bat ( Myotis lucifugus ), northern long-eared bat ( Myotis septentrionalis ), Indiana bat ( Myotis sodalis ), and tricolored bat ( Perimyotis subflavus ), and assessed the degree to which occupancy of each species changed after different vegetation management actions were implemented on USFS lands. We identified 78 different management actions that were hypothesized to influence summer bat occupancy at two spatial scales (5-km and 10-km) across the eastern United States from the Forest Service Activity Tracking System and grouped these management actions into four vegetation management types: clear-cutting, fire, thinning, and ground vegetation management. To evaluate potential effects of these vegetation management types on bat occupancy, we created a yearly management metric representing the average number of years that had passed since any one of the included management actions in each management type had been implemented in each 5-km or 10-km grid cell, weighted by the proportion of the grid cell covered by the management treatment history. We chose these metrics to ask if more management or management done recently had a larger effect on bat occupancy than less management or management done long-ago. We then fit Bayesian hierarchical multi-scale occupancy models for each species to assess how occupancy changed in response to the amount and time since implementation of each vegetation management type. Using the estimated relationships between the yearly metrics of management and bat occupancy, we created predictions for how bat occupancy responded at 1- and 5- years after implementation. We found substantial differences in the response of the four species to the four vegetation management types. Ground vegetation management provided the greatest increase in expected occupancy at 1 year after implementation for little brown bat, long-eared bat, and tricolored bat, while fire provided the greatest increase in expected occupancy for Indiana bat. Thinning provided increases for all species at 1 year after implementation, but even greater increases at 5 years after implementation. Clear-cutting, on the other hand, tended to result in decreased occupancy at both 1- and 5-years after implementation for each species and had the greatest effect on tricolored bat at 1 year after implementation. Clear evidence for how management types like these may be affecting bat populations can be used at regional scales to help private and public forest managers achieve their strategic goals.

eastern United States↗

USGS2010

Hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River, Nebraska— With special emphasis on the Niobrara National Scenic River

The Niobrara River is an ecologically and economically important resource in Nebraska. The Nebraska Department of Natural Resources’ recent designation of the hydraulically connected surface- and groundwater resources of the Niobrara River Basin as “fully appropriated” has emphasized the importance of understanding linkages between the physical and ecological dynamics of the Niobrara River so it can be sustainably managed. In cooperation with the Nebraska Game and Parks Commission, the U.S. Geological Survey investigated the hydrogeomorphic and hydraulic attributes of the Niobrara River in northern Nebraska. This report presents the results of an analysis of hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River and its valley for the approximately 330-mile reach from Dunlap Diversion Dam to its confluence with the Missouri River. Two spatial scales were used to examine and quantify the hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River: a basin scale and a reach scale. At the basin scale, digital spatial data and hydrologic data were analyzed to (1) test for differences between 36 previously determined longitudinal hydrogeomorphic segments; (2) quantitatively describe the hydrogeomorphic characteristics of the river and its valley; and (3) evaluate differences in hydraulic microhabitat over a range of flow regimes among three fluvial geomorphic provinces. The statistical analysis of hydrogeomorphic segments resulted in reclassification rates of 3 to 28 percent of the segments for the four descriptive geomorphic elements. The reassignment of classes by discriminant analysis resulted in a reduction from 36 to 25 total hydrogeomorphic segments because several adjoining segments shared the same ultimate class assignments. Virtually all of the segment mergers were in the Canyons and Restricted Bottoms (CRB) fluvial geomorphic province. The most frequent classes among hydrogeomorphic segments, and the dominant classes per unit length of river, are: a width-restricted valley confinement condition, sinuous-planview pattern, irregular channel width, and an alternate bar configuration. The Niobrara River in the study area flows through a diversity of fluvial geomorphic settings in its traverse across northern Nebraska. In the Meandering Bottoms (MB) fluvial geomorphic province, river discharge magnitudes are low, and the valley exerts little control on the channel-planview pattern. Within the CRB province, the river flows over a diversity of geologic formations, and the valley and river narrow and expand in approximate synchronicity. In the Braided Bottoms (BB) fluvial geomorphic province, the river primarily flows over Cretaceous Pierre Shale, the valley and channel are persistently wide, and the channel slope is generally uniform. The existence of vegetated islands and consequent multithread channel environments, indicated by a higher braided index, mostly coincided with reaches having gentler slopes and less unit stream power. Longitudinal hydrology curves indicate that the flow of the Niobrara River likely is dominated by groundwater as far downstream as Norden. Unit stream power values in the study area vary between 0 and almost 2 pounds per foot per second. Within the MB province, unit stream power steadily increases as the Niobrara gains discharge from groundwater inflow, and the channel slope steepens. The combination of steep slopes, a constrained channel width, and persistent flow within the CRB province results in unit stream power values that are between three and five times greater than those in less confined segments with comparable or greater discharges. With the exception of hydrogeomorphic segment 3, which is affected by Spencer Dam, unit stream power values in the BB province are generally uniform. Channel sinuosity values in the study area varied generally between 1 and 2.5, but with locally higher values measured in the MB province and at the entrenched bedrock meanders of hydrogeomorphic segment 18 in the CRB province. The differences in channel morphology and hydraulic geometries between fluvial geomorphic provinces are evident in the types, relative abundance, and response of hydraulic microhabitats to changing discharges. The four gaging stations chosen for hydraulic microhabitat analysis are distributed among three different fluvial geomorphic provinces. In the MB province, the smaller channel and lower discharges resulted in the dominance of shallow and intermediate-depth hydraulic environments with the vast majority of hydraulic microhabitat restricted to shallow categories even during upper-decile discharges. In the CRB province, intermediate depth hydraulic conditions, particularly intermediate-swift, dominate over all ranges of discharge. Hydraulic microhabitat conditions were most diverse in the BB province, with most hydraulic microhabitat categories present over the entire range of discharges analyzed. The calculated differences in hydraulic microhabitat distributions, abundance, and adjustments between streamflow-gaging stations were the result of differences in physical structure of the channel and subsequent channel hydraulic geometry. At the reach scale, field measurements made in water years 2008 and 2009 in four study reaches within the Scenic Reach were used to (1) characterize the elevation and geomorphic processes associated with fluvial landforms, (2) build hydraulic geometry relations, (3) examine flow hydraulics over a range of discharges, and (4) examine the types and responses of hydraulic microhabitats to a range of flow magnitudes. Four landform groups were identified and named in order of increasing elevation: low flood plains, intermediate flood plains, low terraces, and high terraces. The terraces were poorly characterized because the surveys did not extend across the full width of the alluvial valley bottom. The two lowest fluvial landforms are likely active in the modern hydroclimatic regime. Sediment samples obtained in the study reaches indicate that the primary bed material in the active channel ranged in size from coarse silt to coarse sand. Grain-size distributions from samples also indicate that the bed of the Niobrara River among the study reaches coarsens and has increasing grainsize variability in the downstream direction. Values of at-a-station hydraulic geometry exponents indicate that the Niobrara River in the study reaches adjusts its geometry to changing discharges primarily through increases in flow depth and velocity. Relations at one cross section indicated that, at least locally, changes in width were also an important channel adjustment mechanism. Hydraulic behavior over the range of flows measured was not consistent among all study reaches, but two general modes of hydraulic behavior were observed in the reaches with substantial coverage of the bed by fine sediment. At the Sunny Brook and Muleshoe study reaches, average boundary-shear stress remained approximately constant, and hydraulic resistance decreased, for discharges below 900 cubic feet per second (ft 3 /s). Above 900 ft 3 /s, average boundary shear stress and hydraulic resistance both increased. The Rock Barn study reach did not exhibit the same two-mode hydraulic behavior observed at the Sunny Brook and Muleshoe reaches. The coincident increase in boundary shear stress above 900 ft 3 /s observed at the Sunny Brook and Muleshoe study reaches represents a potential hydraulic threshold above which bedload transport rates were likely to increase markedly. No consistent bed-adjustment pattern (scour or fill) was identified in the study reaches over the range of flows or over the measurement season. Analysis of hydraulic microhabitats over the range of discharges measured at the study reaches indicates that some percentage of most habitat niche categories was available for at least one discharge condition, but the majority of hydraulic habitat available was within the intermediate-swift and deepswift habitat niche categories. Deep-swift conditions dominated nearly all study reaches under all measured discharge conditions. Slight differences in habitat distributions were observed between the study reaches with substantial coverage of the bed by fine sediment—Sunny Brook, Muleshoe, and Rock Barn—and the bedrock-dominated reach, Crooked Creek. Although the four study reaches occupy three different hydrogeomorphic segments, the types, relative abundance, and response of hydraulic microhabitat niche distributions to changing discharge conditions generally were similar among all reaches.

Nebraska↗