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USGS2022

Simulation experiments comparing nonstationary design-flood adjustments based on observed annual peak flows in the conterminous United States

While nonstationary flood frequency analysis (NSFFA) methods have proliferated, few studies have rigorously compared them for modeling changes in both the central tendency and variability of annual peak-flow series, also known as the annual maximum series (AMS), in hydrologically diverse areas. Through Monte Carlo experiments, we appraise five methods for updating estimates of 10- and 100-year floods at gauged sites using synthetic records based on sample moments and change trajectories of observed AMS in the conterminous United States (CONUS). We compare two methods that consider changes in both central tendency and variability - a Gamma generalized linear model estimated with weighted least squares and the Generalized Additive Model for Location, Scale, Shape (GAMLSS) - with a distribution-free approach (quantile regression), and baseline cases assuming stationarity or only changes in central tendency. ‘Trend-space’ plots identify realistic AMS changes for which modeling trends in both central tendency and variability were warranted based on fractional root mean squared errors (fRMSE). They also reveal statistical properties of AMS under which NSFFA models perform especially well or poorly. For instance, quantile regression performed especially well (poorly) under strong negative (positive) skewness. Although the nonstationary LP3 distribution accommodates most AMS with trends well, the sensitivity of NSFFA model performance to different sample moments and trends suggests the need for more flexibility in prescribing design-flood adjustments in the CONUS. A follow-up comparison of regional NSFFA models pooling at-site AMS would further illuminate NSFFA guidance, especially for AMS with properties less conducive to NSFFA modeling, such as positive skewness and increasing variability.

Journal of Hydrology X↗

USGS2016

Barrier displacement on a neutral landscape: Towards a theory of continental biogeography

Macroevolutionary theory posits three processes leading to lineage diversification and the formation of regional biotas: dispersal (species geographic range expansion), speciation (species lineage splitting), and extinction (species lineage termination). The Theory of Island Biogeography (TIB) predicts species richness values using just two of these processes; dispersal and extinction. Yet most species on Earth live on continents or continental shelves, and the dynamics of evolutionary diversification at regional and continental scales are qualitatively different from those that govern the formation of species richness on biogeographic islands. Certain geomorphological processes operating perennially on continental platforms displace barriers to gene flow and organismal dispersal, and affect all three terms of macroevolutionary diversification. For example, uplift of a dissected landscape and river capture both merge and separate portions of adjacent areas, allowing dispersal and larger geographic ranges, vicariant speciation and smaller geographic ranges, and extinction when range sizes are subdivided below a minimum persistence threshold. The TIB also does not predict many biogeographic and phylogenetic patterns widely observed in continentally distributed taxa, including: 1, power function-like species-area relationships; 2, log-normal distribution of species geographic range sizes, in which most species have restricted ranges (are endemic) and few species have broad ranges (are cosmopolitan); 3, mid-domain effects with more species towards the geographic center, and more early-branching, species-poor clades towards the geographic periphery; 4, exponential rates of net diversification with log-linear accumulation of lineages through geological time; and 5, power function-like relationships between species-richness and clade diversity, in which most clades are species-poor and few clades are species-rich. Current theory does not provide a robust mechanistic framework to connect these seemingly disparate patterns. Here we present SEAMLESS (Spatially-Explicit Area Model of Landscape Evolution by SimulationS) that generates clade diversification by moving geographic barriers on a continuous, neutral landscape. SEAMLESS is a neutral Landscape Evolution Model (LEM) that treats species and barriers as functionally equivalent with respect to model parameters. SEAMLESS differs from other model-based biogeographic methods (e.g. Lagrange, GeoSSE, BayArea, BioGeoBEARS) by modeling properties of dispersal barriers rather than areas, and by modeling the evolution of species lineages on a continuous landscape, rather than the evolution of geographic ranges along branches of a phylogeny. SEAMLESS shows how dispersal is required to maintain species richness and avoid clade-wide extinction, demonstrates that ancestral range size does not predict species richness, and provides a unified explanation for the suite of commonly observed biogeographic and phylogenetic patterns listed above. SEAMLESS explains how a simple barrier-displacement mechanism affects lineage diversification under neutral conditions, and is advanced here towards the formulation of a general theory of continental biogeography.

Systematic Biology↗

USGS2025

Scalable environmental DNA methods reveal strong associations between landscape-scale forest habitat and insect richness

While aquatic environmental DNA (eDNA) methods have reached relative maturity, terrestrial eDNA methods are nascent and have yet to reach widespread use. Field-ready applications require eDNA survey methods where samples are easy to collect by inexperienced practitioners, easy to transport between the field and lab, and easy to process thereafter. Here, we demonstrate methods that satisfy these requirements and show strong potential for characterizing diverse terrestrial eDNA samples collected from flower and leaf surfaces. We used novel methods to collect and process 236 flower eDNA samples and 21 leaf surface eDNA samples, obtaining 2,228 Arthropoda eDNA detections spanning 175 families using amplicon sequencing of two genetic markers. Detected taxa were diverse and included numerous groups of conservation concern, such as bees (Hymenoptera; Anthophila, 32 genera spanning 5 families) and Lepidoptera (209 genera from 21 families). Data reveal strong associations between insect community richness and remotely sensed measures of forest habitat, providing a quantitative perspective of relevance to insect conservation. It is increasingly clear that a variety of organisms readily disperse eDNA throughout the environment, supporting the notion that eDNA will be a powerful tool for characterizing species distributions and monitoring at-risk species. However, we conclude that researchers seeking to characterize fine-scale habitat associations or plant-pollinator interactions using eDNA will need to carefully design studies with appropriate field controls, such as the leaf surface eDNA samples collected here.

BioRxiv↗

USGS2008

Preliminary classification of water areas within the Atchafalaya Basin Floodway System by using landsat imagery

The southern portion of the Atchafalaya Basin Floodway System (ABFS) is a large area (2,571 km 2 ) in south central Louisiana bounded on the east and west sides by a levee system. The ABFS is a sparsely populated area that includes some of the Nation's most significant extents of bottomland hardwoods, swamps, bayous, and backwater lakes, holding a rich abundance and diversity of terrestrial and aquatic species. The seasonal flow of water through the ABFS is critical to maintaining its ecological integrity. Because of strong interdependencies among species, habitat quality, and water flow in the ABFS, there is a need to better define the paths by which water moves at various stages of the hydrocycle. Although river level gages have collected a long historical record of water level variation, very little synoptic information has been available regarding the distribution and character of water at more remote locations in the basin. Most water management plans for the ABFS strive to improve water quality by increasing water flow and circulation from the main stem of the Atchafalaya River into isolated areas. To describe the distribution of land and water on a basin-wide scale, we chose to use Landsat 5 and Landsat 7 imagery to determine the extent of water distribution from 1985 to 2006 and at a variety of river stages. Because the visual signature of river water is high turbidity, we also used Landsat imagery to describe the distribution of turbid water in the ABFS. The ability to track water flow patterns by tracking turbid waters will enhance the characterization of water movement and aid in planning.

Louisiana↗

USGS2015

Porphyry copper assessment of the Central Asian Orogenic Belt and eastern Tethysides: China, Mongolia, Russia, Pakistan, Kazakhstan, Tajikistan, and India: Chapter X in Global mineral resource assessment

The U.S. Geological Survey collaborated with international colleagues to assess undiscovered resources in porphyry copper deposits in the Central Asian Orogenic Belt and eastern Tethysides. These areas host 20 known porphyry copper deposits, including the world class Oyu Tolgoi deposit in Mongolia that was discovered in the late 1990s. The study area covers major parts of the world’s largest orogenic systems. The Central Asian Orogenic Belt is a collage of amalgamated Precambrian through Mesozoic terranes that extends from the Ural Mountains in the west nearly to the Pacific Coast of Asia in the east and records the evolution and final closure of the Paleo-Asian Ocean in Permian time. The eastern Tethysides, the orogenic belt to the south of the Central Asian Orogenic Belt, records the evolution of another ancient ocean system, the Tethys Ocean. The evolution of these orogenic belts involved magmatism associated with a variety of geologic settings appropriate for formation of porphyry copper deposits, including subduction-related island arcs, continental arcs, and collisional and postconvergent settings. The original settings are difficult to trace because the arcs have been complexly deformed and dismembered by younger tectonic events. Twelve mineral resource assessment tracts were delineated to be permissive for the occurrence of porphyry copper deposits based on mapped and inferred subsurface distributions of igneous rocks of specific age ranges and compositions. These include (1) nine Paleozoic tracts in the Central Asian Orogenic Belt, which range in area from about 60,000 to 800,000 square kilometers (km 2 ); (2) a complex area of about 400,000 km 2 on the northern margin of the Tethysides, the Qinling-Dabie tract, which spans central China and areas to the west, encompassing Paleozoic through Triassic igneous rocks that formed in diverse settings; and (3) assemblages of late Paleozoic and Mesozoic rocks that define two other tracts in the Tethysides, the 100,000 km 2 Jinsajiang tract and the 300,000 km 2 Tethyan-Gangdese tract. Assessment participants evaluated applicable grade and tonnage models and estimated numbers of undiscovered deposits at different confidence levels for each permissive tract. The estimates were then combined with the selected grade and tonnage models using Monte Carlo simulations to generate probabilistic estimates of undiscovered resources. Additional resources in extensions of deposits with identified resources were not specifically evaluated. Assessment results, presented in tables and graphs, show amounts of metal and rock in undiscovered deposits at selected quantile levels of probability (0.95, 0.9, 0.5, 0.1, and 0.05 confidence levels), as well as the arithmetic mean and associated standard deviations and variances for each tract. This assessment estimated a total of 97 undiscovered porphyry copper deposits within the assessed permissive tracts. This represents nearly five times the 20 known deposits. Predicted mean resources that could be associated with these undiscovered deposits are about 370,000,000 metric tons (t) of copper, 10,000 t of gold, 7,700,000 t of molybdenum, and 120,000 t of silver. The assessment area is estimated to contain about five times as much copper in undiscovered deposits as has been identified to date. This report includes a summary of the data used in the assessment, a brief overview of the geologic framework of the area, descriptions of permissive tracts and known deposits, maps, and tables. A geographic information system database that accompanies this report includes the tract boundaries and known porphyry copper deposits, significant prospects, and prospects. Assessments of overlapping younger rocks and adjacent areas are included in separate reports available on-line at http://minerals.usgs.gov/global/ .

Scientific Investigations Report↗

USGS2018

Discontinuities and functional resilience of large river fish assemblages

Functional composition of communities across scales is increasingly used to infer resilience of biotic communities to environmental change. To assess the relevance of these concepts to management of large rivers, analyses were applied to fish community data of the Upper Mississippi River. First, to evaluate whether there was evidence for structural patterns in fish size distributions, a discontinuity analysis was performed. Using long‐term fish data, consistent discontinuities were identified across 14 reaches, suggesting similar structuring processes occur throughout the nearly 1300 river kilometers represented by those reaches. Increased variability in species abundance in relation to proximity to edges of body size aggregations supports the discontinuity hypothesis that body size aggregations are structured by key processes. Functional richness and redundancy were quantified within and across identified scales for each of 14 river reaches. Diversity of trophic and spawning guilds was generally greater in the upstream reaches in comparison with downstream reaches, with the exception of the diversity of large‐bodied spawning guilds. Evidence of functional shifts in the composition of fishes occurred, but differed by size aggregations, likely reflecting scale‐specific resource availability. Redundancy of spawning and trophic groups across body size aggregations suggested downstream reaches of this system may be less resilient to disturbances and were weakly associated with reduced habitat diversity. These findings suggest that discontinuities in large river fish assemblages do occur and may provide indication of shifting resource availability. Further investigation of the underlying processes and scales that support resource availability will be critical to managing for resilience in large river ecosystems.

Upper Mississippi River↗

USGS2011

Groupers on the edge: Shelf edge spawning habitat in and around marine reserves of the northeastern Gulf of Mexico

The northeastern Gulf of Mexico contains some of the most diverse and productive marine habitat in the United States. Much of this habitat, located on the shelf edge in depths of 50 to 120 m, supports spawning for many economically important species, including groupers. Here, we couple acoustic surveys with georeferenced videography to describe the primary spatial and geologic features of spawning aggregation sites for four economically important species: gag ( Mycteroperca microlepis ), scamp ( M. phenax ), red grouper ( Epinephelus morio ), and red snapper ( Lutjanus campechanus ), with notes on fish distribution and abundance and spawning activities. We provide information on movement patterns of reef fish determined using acoustic telemetry. Finally, we discuss the possible coupling of geomorphology with hydrographic features to influence the overall productivity of the region and the importance of spatial fishery management in sustaining that productivity.

Northeastern Gulf of Mexico↗

USGS2015

Effects of topoclimatic complexity on the composition of woody plant communities

Topography can create substantial environmental variation at fine spatial scales. Shaped by slope, aspect, hill-position and elevation, topoclimate heterogeneity may increase ecological diversity, and act as a spatial buffer for vegetation responding to climate change. Strong links have been observed between climate heterogeneity and species diversity at broader scales, but the importance of topoclimate for woody vegetation across small spatial extents merits closer examination. We established woody vegetation monitoring plots in mixed evergreen-deciduous woodlands that spanned topoclimate gradients of a topographically heterogeneous landscape in northern California. We investigated the association between the structure of adult and regenerating size classes of woody vegetation and multidimensional topoclimate at a fine scale. We found a significant effect of topoclimate on both single-species distributions and community composition. Effects of topoclimate were evident in the regenerating size class for all dominant species (four Quercus spp. , Umbellularia californica and Pseudotsuga menziesii ) but only in two dominant species ( Quercus agrifolia and Quercus garryana ) for the adult size class. Adult abundance was correlated with water balance parameters (e.g. climatic water deficit) and recruit abundance was correlated with an interaction between the topoclimate parameters and conspecific adult abundance (likely reflecting local seed dispersal). However, in all cases, the topoclimate signal was weak. The magnitude of environmental variation across our study site may be small relative to the tolerance of long-lived woody species. Dispersal limitations, management practices and patchy disturbance regimes also may interact with topoclimate, weakening its influence on woody vegetation distributions. Our study supports the biological relevance of multidimensional topoclimate for mixed woodland communities, but highlights that this relationship might be mediated by interacting factors at local scales.

California↗

USGS1986

Shuttle imaging radar: Physical controls on signal penetration and subsurface scattenng in the Eastern Sahara

SIR-A signal penetration and subsurface backscatter within the upper meter or so of the sediment blanket in the Eastern Sahara of southern Egypt and northern Sudan are enhanced both by radar sensor parameters and by the physical and chemical characteristics of eolian and alluvial materials. Interpretation of SIR-A images by McCauley et al. [1], [2] dramatically changed previous concepts of the role that fluvial processes have played over the past 10000 to 30000000 years in shaping this now extremely flat, featureless, and hyperarid landscape. In the present paper we summarize the near-surface stratigraphy, the electrical properties of materials, and the types of radar interfaces found to be responsible for different classes of SIR-A tonal response. The dominant factors related to efficient microwave signal penetration into the sediment blanket include a) favorable distribution of particle sizes, b) extremely low moisture content and c) reduced geometric scattering at the SIR-A frequency (1.3 GHz). The depth of signal penetration that results in a recorded backscatter, here called "radar imaging depth," was documented in the field to be a maximum of 1.5 m, or 0.25 of the calculated "skin depth," for the sediment blanket. Radar imaging depth is estimated to be between 2 and 3 m for active sand dune materials. Diverse permittivity interfaces and volume scatterers within the shallow subsurface are responsible for most of the observed backscatter not directly attributable to grazing outcrops.

IEEE Transactions on Geoscience and Remote Sensing↗

USGS2010

Integrating physiology, population dynamics and climate to make multi-scale predictions for the spread of an invasive insect: The Argentine ant at Haleakala National Park, Hawaii

Mechanistic models for predicting species’ distribution patterns present particular advantages and challenges relative to models developed from statistical correlations between distribution and climate. They can be especially useful for predicting the range of invasive species whose distribution has not yet reached equilibrium. Here, we illustrate how a physiological model of development for the invasive Argentine ant can be connected to differences in micro-site suitability, population dynamics and climatic gradients; processes operating at quite different spatial scales. Our study is located in the subalpine shrubland of Haleakala National Park, Hawaii, where the spread of Argentine ants Linepithema humile has been documented for the past twenty-five years. We report four main results. First, at a microsite level, the accumulation of degree-days recorded in potential ant nest sites under bare ground or rocks was significantly greater than under a groundcover of grassy vegetation. Second, annual degree-days measured where population boundaries have not expanded (456-521 degree-days), were just above the developmental requirements identified from earlier laboratory studies (445 degree-days above 15.98C). Third, rates of population expansion showed a strong linear relationship with annual degree-days. Finally, an empirical relationship between soil degree-days and climate variables mapped at a broader scale predicts the potential for future range expansion of Argentine ants at Haleakala, particularly to the west of the lower colony and the east of the upper colony. Variation in the availability of suitable microsites, driven by changes in vegetation cover and ultimately climate, provide a hierarchical understanding of the distribution of Argentine ants close to their cold-wet limit of climatic tolerances. We conclude that the integration of physiology, population dynamics and climate mapping holds much promise for making more robust predictions about the potential spread of invasive species.

Hawaii↗

USGS1983

Water-resources investigations of the U.S. Geological Survey in New Mexico; fiscal year 1981

The Water Resources Division of the U.S. Geological Survey investigates the occurrence, quantity, quality, distribution, and movement of the Nation 's surface and underground waters, and coordinates Federal water data acquisition activities. During fiscal year 1981, the New Mexico District had 40 active projects, released 19 reports, and answered hundreds of requests of water-related information. Investigations included the following: (1) chemical quality of surface water in New Mexico; (2) chemical quality of groundwater in New Mexico; (3) sediment transport in New Mexico streams; (4) surface water supply; (5) surface water diversions for irrigation; (6) streamflow characteristics; (7) effect of urban development on storm runoff; (8) inundation from floods; (9) effects of groundwater pumping; (10) long-term monitoring of groundwater levels; (11) groundwater and surface water relationships; (12) consumptive use by phreatophytes; (13) hydrologic impacts of energy development; and (14) groundwater supplies. (Lantz-PTT)

Open-File Report↗

USGS2023

Potential effects of habitat change on migratory bird movements and avian influenza transmission in the East Asian-Australasian Flyway

Wild waterbirds, and especially wild waterfowl, are considered to be a reservoir for avian influenza viruses, with transmission likely occurring at the agricultural-wildlife interface. In the past few decades, avian influenza has repeatedly emerged in China along the East Asian-Australasian Flyway (EAAF), where extensive habitat conversion has occurred. Rapid environmental changes in the EAAF, especially distributional changes in rice paddy agriculture, have the potential to affect both the movements of wild migratory birds and the likelihood of spillover at the agricultural-wildlife interface. To begin to understand the potential implications such changes may have on waterfowl and disease transmission risk, we created dynamic Brownian Bridge Movement Models (dBBMM) based on waterfowl telemetry data. We used these dBBMM models to create hypothetical scenarios that would predict likely changes in waterfowl distribution relative to recent changes in rice distribution quantified through remote sensing. Our models examined a range of responses in which increased availability of rice paddies would drive increased use by waterfowl and decreased availability would result in decreased use, predicted from empirical data. Results from our scenarios suggested that in southeast China, relatively small decreases in rice agriculture could lead to dramatic loss of stopover habitat, and in northeast China, increases in rice paddies should provide new areas that can be used by waterfowl. Finally, we explored the implications of how such scenarios of changing waterfowl distribution may affect the potential for avian influenza transmission. Our results provide advance understanding of changing disease transmission threats by incorporating real-world data that predicts differences in habitat utilization by migratory birds over time.

Diversity↗

USGS2019

Biogeographical patterns of tunicates utilizing eelgrass as substrate in the western North Atlantic between 39o and 47o north latitude (New Jersey to Newfoundland)

Colonization of eelgrass ( Zostera marina L.) by tunicates can lead to reduced plant growth and survival. Several of the tunicate species that are found on eelgrass in the northwest Atlantic are highly aggressive colonizers, and range expansions are predicted in association with climate-change induced increases in seawater temperature. In 2017, we surveyed tunicates within eelgrass meadows at 33 sites from New Jersey to Newfoundland. Eight tunicate species were identified colonizing eelgrass, of which four were non-native and one was cryptogenic. The most common species ( Botrylloides violaceus and Botryllus schlosseri ) occurred from New York to Atlantic Canada. Tunicate faunas attached to eelgrass were less diverse north of Cape Cod, Massachusetts. Artificial substrates in the vicinity of the eelgrass meadows generally supported more tunicate species than did the eelgrass, but fewer species co-occurred in northern sites than southern sites. The latitudinal gradient in tunicate diversity corresponded to gradients of summertime sea surface temperature and traditional biogeographical zones in the northwest Atlantic, where Cape Cod represents a transition between cold-water and warm-water invertebrate faunas. Tunicate density in the eelgrass meadows was low, ranging generally from 1–25% cover of eelgrass shoots, suggesting that space availability does not currently limit tunicate colonization of eelgrass. This survey, along with our 2013 survey, provide a baseline for identifying future changes in tunicate distribution and abundance in northwest Atlantic eelgrass meadows.

Connecticut, Maine, Massachusetts, New Brunswick, ↗

USGS2021

A characterization of deep-sea coral and sponge communities along the California and Oregon coast using a remotely operated vehicle on the EXPRESS 2018 expedition

Deep-sea coral and sponge (DSCS) communities serve as essential fish habitats (EFH) by providing shelter and nursery habitat, increasing diversity, and increasing prey availability (Freese and Wing, 2003; Bright, 2007; Baillon et al., 2012; Henderson et al., 2020). Threats to these long-lived, fragile organisms from bottom contact fishing gear, potential offshore renewable energy development, and ocean warming and acidification have increased the need for DSCS research along the U.S. West Coast (Gomez et al., 2018; Salgado et al., 2018; Yoklavich, et al., 2018; Gugliotti et al., 2019). The focus of these studies has varied from species distribution and abundance (Yoklavich and Love, 2005; Tissot et al., 2006) to developing and validating predictive distribution models (Huff et al., 2013; Rooper et al., 2017; Kreidler, 2020) to finding medicinal uses for corals and sponges (Essack et al., 2011; Shrestha et al., 2018). Due to the vast area of unexplored seafloor within the U.S. exclusive economic zone (EEZ; 200 nautical miles off the coast) and the technological requirements and expanse of deep-sea research, there is still much to learn about the distributions and biology of DSCS. This information is critical to resource managers for effective conservation and management of DSCS habitats. Protections are provided by the Pacific Fishery Management Council (PFMC) designation of groundfish EFH conservation areas (EFHCA) and the National Marine Sanctuaries Act (NMSA). Areas designated as EFHCA are closed to bottom trawl fishing to protect and preserve seafloor habitats. Recently the PFMC adopted Amendment 28 to the Groundfish Fishery Management Plan (GFMP; Pacific Fishery Management Council, 2019) which modified EFHCAs by closing new areas identified as vulnerable and reopening areas deemed not vulnerable. The NMSA prohibits bottom disturbance from certain activities within areas designated as national marine sanctuaries, such as oil and gas exploration or extraction, cable laying, and other forms of seabed alteration or construction that disturb benthic communities. NOAA’s Deep-Sea Coral and Research Technology Program (DSCRTP) began a 4-yr funding initiative for the U.S. West Coast in 2017. The goals of the West Coast Deep-Sea Coral Initiative (WCDSCI) were to: 1) gather baseline information on areas subject to fishing regulation changes prior to the implementation of Amendment 28; 2) improve our understanding of known DSCS bycatch “hot spots”; and 3) explore and assess DSCS resources within NOAA National Marine Sanctuaries with emphasis on areas of sanctuary resource protection and management concerns. During the first year of the program, a research cruise was developed to survey the West Coast from Oregon to California studying the DSCS ecosystems in priority areas. The 31-day expedition (9 Oct – 8 Nov, 2018) was launched from the NOAA Ship Bell M. Shimada, beginning in Newport, OR and ending in San Diego, CA. The science team assembled for this cruise were members of the EXpanding Pacific Research and Exploration of Submerged Systems (EXPRESS) campaign, which brings together researchers from federal and nonfederal institutions to collaborate on scientific expeditions targeting the deepwater areas off California, Oregon, and Washington. EXPRESS supports researchers leveraging funding, resources, personnel, and expertise to accomplish more science than would have been possible by a single entity alone. The 2018 coastwide expedition included research partners from National Marine Fisheries Service (NMFS) Southwest Fisheries Science Center (SWFSC) and Northwest Fisheries Science Center (NWFSC), National Ocean Service (Channel Islands, Cordell Bank, Greater Farallones, and Monterey Bay National Marine Sanctuaries), Bureau of Ocean Energy Management (BOEM), U.S. Geological Survey (USGS), and Monterey Bay Aquarium Research Institute (MBARI). Research objectives for the cruise were to: 1) Collect DSCS baseline information at 10 of the EFHCA sites undergoing protection modifications by the Pacific Fishery Management Council. 2) Collect DSCS and fish data at previously unexplored sites within West Coast National Marine Sanctuaries. 3) Revisit a subset of previously surveyed sites to document if changes in DCSC have occurred over time. 4) Collect information to validate BOEM supported cross-shelf habitat suitability models for DSCS. 5) Collect samples to help in identifying (and understanding) West Coast DSCS and expand use of new technologies (ROV, AUV, and environmental DNA [eDNA]). 6) Collect water samples for coastwide eDNA, nutrient, and carbon chemistry studies.

California, Oregon↗

USGS2010

Occurrence and distribution of dissolved solids, selenium, and uranium in groundwater and surface water in the Arkansas River Basin from the headwaters to Coolidge, Kansas, 1970-2009

In 2007, the U.S. Geological Survey (USGS), in cooperation with City of Aurora, Colorado Springs Utilities, Colorado Water Conservation Board, Lower Arkansas Valley Water Conservancy District, Pueblo Board of Water Works, Southeastern Colorado Water Activity Enterprise, Southeastern Colorado Water Conservancy District, and Upper Arkansas Water Conservancy District began a retrospective evaluation to characterize the occurrence and distribution of dissolved-solids (DS), selenium, and uranium concentrations in groundwater and surface water in the Arkansas River Basin based on available water-quality data collected by several agencies. This report summarizes and characterizes available DS, dissolved-selenium, and dissolved-uranium concentrations in groundwater and surface water for 1970-2009 and describes DS, dissolved-selenium, and dissolved-uranium loads in surface water along the main-stem Arkansas River and selected tributary and diversion sites from the headwaters near Leadville, Colorado, to the USGS 07137500 Arkansas River near Coolidge, Kansas (Ark Coolidge), streamgage, a drainage area of 25,410 square miles. Dissolved-solids concentrations varied spatially in groundwater and surface water in the Arkansas River Basin. Dissolved-solids concentrations in groundwater from Quaternary alluvial, glacial drift, and wind-laid deposits (HSU 1) increased downgradient with median values of about 220 mg/L in the Upper Arkansas subbasin (Arkansas River Basin from the headwaters to Pueblo Reservoir) to about 3,400 mg/L in the Lower Arkansas subbasin (Arkansas River Basin from John Martin Reservoir to Ark Coolidge). Dissolved-solids concentrations in the Arkansas River also increased substantially in the downstream direction between the USGS 07086000 Arkansas River at Granite, Colorado (Ark Granite), and Ark Coolidge streamgages. Based on periodic data collected from 1976-2007, median DS concentrations in the Arkansas River ranged from about 64 mg/L at Ark Granite to about 4,060 mg/L at Ark Coolidge representing over a 6,000 percent increase in median DS concentrations. Temporal variations in specific conductance values (which are directly related to DS concentrations) and seasonal variations in DS concentrations and loads were investigated at selected sites in the Arkansas River from Ark Granite to Ark Coolidge. Analyses indicated that, for the most part, specific conductance values (surrogate for DS concentrations) have remained relatively constant or have decreased in the Arkansas River since about 1970. Dissolved-solids concentrations in the Arkansas River were higher during the nonirrigation season (November-February) than during the irrigation season (March-October). Average annual DS loads, however, were higher during the irrigation season than during the nonirrigation season. Average annual DS loads during the irrigation season were at least two times and as much as 23 times higher than average annual DS loads during the nonirrigation season with the largest differences occurring at sites located downstream from the two main-stem reservoirs at USGS 07099400 Arkansas River above Pueblo, Colorado (Ark Pueblo), (which is below Pueblo Reservoir) and USGS 07130500 Arkansas River below John Martin Reservoir, Colorado (Ark below JMR). View report for unabridged abstract.

Scientific Investigations Report↗

USGS2002

Factors influencing the distribution of Myxobolus cerebralis , the causative agent of whirling disease, in the Cache la Poudre River, Colorado

Oligochaetes, triactinomyxons (TAMs), and age-0 trout were sampled in the upper Cache la Poudre River, Colorado, to determine the distribution of Myxobolus cerebralis during 1997 and 1998. Densities of the intermediate host, the oligochaete Tubifex tubifex , were 3.5 orders of magnitude higher in the M. cerebralis -infected Poudre Rearing Unit (PRU) trout rearing ponds than at any of the river sampling reaches. Oligochaetes, including T. tubifex, were rare in the river (1 oligochaete m -2 ), except in a few stream side alcoves and eddies (50 oligochaete m -2 ). Species composition of oligochaetes in the river reaches was more diverse than in the PRU. Tubifex tubifex constituted 50% or less of the oligochaete community in the river and 98% in the PRU. Infection rates of T. tubifex were 1% in the area above the PRU, 2% in the PRU, and 6% below the PRU. An increased M. cerebralis intensity of infection in age-0 trout below the PRU could not be attributed entirely to the high numbers of TAMs in its effluent (3.7 TAMs l -1 ). Low densities of TAMs ranging from 0 to 0.2 TAMs l -1 were found in the river reaches, yet nearly all of the age-0 trout were infected soon after emergence. This suggests that very few TAMs, as measured by filtration, need be present in the water column to bring about infection in the majority of trout present. This also indicates that the parasite can persist and potentially cause reduced juvenile trout recruitment in cold, oligotrophic, sediment poor, high-gradient streams.

Colorado↗

USGS1999

Snake species of the world: A taxonomic and geographic reference. v. 1

Given the absence of a current source on snake diversity and nomenclature and the expressed global need to understand better the diversity of our biota, we think that a catalogue of the world snake fauna complete with synonymies at the familial, generic, and specific levels is essential. We provide that here beginning with publication of the first volume. This compendium will facilitate comparative studies on the ecology, genetics, and behavior of snakes and, we hope, contribute to their conservation. At the very least, this work, when completed, will provide a readily available reference to the current taxonomic statuses and geographic distributions of snakes on a global scale. No comprehensive, up-to-date catalogue of snake species exists, and it is obvious that a detailed and inclusive treatment is long overdue. Snake Species of the World provides a comprehensive treatment of 31 families, 450 genera, and more than 2500 species of living snakes. The magnitude of the compilation requires publication in several volumes. This volume, the first of three, covers 682 species. A primary goal of this synthesis is to provide interested readers with a means for tracking scientific names that have been applied to a snake and determining the currently accepted name of that species. A secondary goal is to alert those interested in snakes as research subjects that in general many species are poorly known, that some have limited distributions, and that several are characterized by taxonomic problems.

Book↗

USGS2025

Abundance of ohiʻa-associated ambrosia beetles in two sites with rapid ohiʻa death outbreaks

ʻŌhiʻa lehua ( Metrosideros polymorpha Gaudich.) is the dominant tree in native Hawaiian forests but is threatened by two pathogenic fungi ( Ceratocystis spp.) which cause Rapid ʻŌhiʻa Death (ROD). Understanding the spread of ROD is vital to informing prevention and management strategies. Ambrosia beetles (Coleoptera: Curculionidae: Scolytinae) contribute to the spread of disease by releasing contaminated frass into the environment or carrying fungal spores between trees on their bodies. We quantified the abundance of ʻōhiʻa-associated ambrosia beetles and their potential contributions to fungal spread within two study sites experiencing active ROD outbreaks. We established a grid of beetle traps at each site, cultured trap samples for viable Ceratocystis , and compared the spatial distribution of beetle captures with that of ʻōhiʻa trees showing symptoms of ROD. Nearly all captured ʻōhiʻa-associated beetles were Xyleborinus saxesenii (Ratzeburg) or Xylosandrus crassiusculus (Motschulsky), both introduced species that utilize many plant hosts. For both species, abundance was unrelated to distance to the nearest symptomatic ʻōhiʻa tree. However, at one of our sites, Xylosandrus crassiusculus abundance was higher on one side of a fence line, where there were more symptomatic ʻōhiʻa within a denser and more diverse forest. Culturing the collected samples (beetles, water, and debris) produced instances of Ceratocystis viability in samples both with and without ʻōhiʻa-associated beetles, supporting the potential for transmission via frass carried by wind as well as direct transmission by beetles. The community of ʻōhiʻa-associated beetles we captured differed from previous findings at lower elevation sites, highlighting the complexity of beetlemediated fungal infection risk.

Hawaii↗