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USGS2020

Water-quality trends for selected sites and constituents in the international Red River of the North Basin, Minnesota and North Dakota, United States, and Manitoba, Canada, 1970–2017

A comprehensive study to evaluate water-quality trends, while considering natural hydroclimatic variability, in the Red River of the North Basin and assess water-quality conditions for the Red River of the North crossing the international boundary near Emerson, Manitoba, Canada (the binational site), was completed by the U.S. Geological Survey in cooperation with the International Joint Commission, North Dakota Department of Environmental Quality, and Minnesota Pollution Control Agency and in collaboration with Manitoba Sustainable Development and Environment and Climate Change Canada. The international Red River of the North Basin encompasses 3 U.S. States (South Dakota, North Dakota, and Minnesota) and 1 Canadian Province (Manitoba). Water quality in the Red River of the North Basin is of concern for both Federal governments and State and Provincial governments. Water-quality objectives have been previously established for selected dissolved ions and recently (2019) proposed for selected nutrients for the binational site. In the current (2020) study, water-quality data from State, Provincial, and Federal agencies in the United States and Canada for sites in the Red River of the North Basin from 1970 to 2017 were compiled and used for trend analysis. Trend analysis using a water-quality dataset from multiple agencies that collect water-quality data for various objectives presented multiple challenges. The trend-analysis approach was able to accommodate differences in water-quality data caused by field-collection and laboratory-analytical method differences, disparities in sampling frequencies, and spatial and temporal gaps in data. Most of these challenges were overcome by the statistical tool, R–QWTREND, which identifies trends in concentration unrelated to variability in streamflow. The integrated basin approach used in the current study, combined with comparing current data trends with historical trends, provided valuable insights into understanding how water quality is changing spatially (34 sites analyzed for a recent period, 2000–15) and temporally (5 sites analyzed for a 45-year historical period, 1970–2015) within the Red River of the North Basin. One of the most consistent spatial and temporal changes observed in the current study was increasing concentrations of sulfate among tributary and main-stem sites since 2000. For some sites, increases were detected starting as early as 1985. Total dissolved solids and chloride concentrations had spatial and temporal patterns like sulfate. Although R–QWTREND removes the variability in constituent concentration caused by natural streamflow variability, all variability in sulfate caused by hydroclimatic variability may not be captured because of changes in hydrologic pathways and changes in the contributions of sulfate from various natural sources. Nutrient concentrations demonstrated less consistent spatial and temporal changes than sulfate, and changes in nutrient concentrations were assumed to be more closely tied to human-induced rather than natural changes. Nitrate-plus-nitrite concentrations were mostly increasing in the upper Red River of the North subbasin, and for nitrate plus nitrite and total nitrogen, the Sheyenne River subbasin had consistent decreasing concentrations. Since 2000, total phosphorus has decreased in the upper Red River of the North subbasin, but total phosphorus concentration has increased for sites in the lower Red River of the North subbasin, and for some main-stem sites, concentrations have been increasing since 1985. Unlike sulfate, the pattern in historical trends for total phosphorus for the main-stem sites differed from tributary sites, indicating that human-induced changes affected tributaries and main-stem sites differently. The more detailed evaluation of flow-averaged water-quality conditions for the binational site provided an understanding of how loads have changed over time and what proportion of the year and season concentrations are expected to exceed water-quality objectives. In a basin with highly variable streamflow like the Red River of the North, the trend in flow-averaged load (assuming streamflow conditions are the same year after year) provided a robust measure of change over time. Increasing concentrations of sulfate, chloride, total dissolved solids, and total phosphorus since 1985 for the binational site resulted in longer periods of exceedance of water-quality objectives per year occurring over time. For total nitrogen, decreasing concentrations resulted in shorter periods of exceedance per year during 1980 to 2015, but concentrations were still expected to exceed the water-quality objective about half the year. Periods of when exceedances were likely to occur during the year were affected by the source and transport mechanisms of the constituent. Trend results from this effort identified how water quality has changed across the basin, and further investigation would help to identify causes for the trends observed here. Information from the current study provides a basis for future trend attribution studies, evaluation of water-quality objectives, and development of comprehensive strategies for reducing nutrients to desired targets and establishes a baseline for tracking future progress in the Red River of the North Basin.

Minnesota, North Dakota, South Dakota, Manitoba↗

USGS2022

Simulation of groundwater and surface-water resources of the San Antonio Creek Valley watershed, Santa Barbara County, California

In the San Antonio Creek Valley watershed (SACVW), western Santa Barbara County, California, groundwater is the primary source of water for agricultural irrigation, the town of Los Alamos, and supplemental water to Vandenberg Space Force Base (VSFB). Groundwater pumpage has increased since the 1970s as non-irrigated agricultural land has been converted to irrigated land and as local pumping for municipal use has increased. This increase in groundwater use has resulted in declining groundwater levels, adjustments in surface-water flows and species habitats, and changes in water quality. Water managers are addressing the challenges of meeting this increased demand while maintaining sustainable groundwater supplies. To address these challenges, Santa Barbara County Water Agency, Vandenberg Space Force Base (VSFB), and the U.S. Geological Survey (USGS) undertook a cooperative study to characterize the integrated hydrologic system of the SACVW and develop tools to better understand and manage the groundwater system. The objectives of this study were to improve the understanding of the integrated hydrologic system and incorporate the understanding into an integrated groundwater and surface-water flow model that can be used to help manage the water resources in the SACVW. The San Antonio Creek integrated model (SACIM) was developed using the USGS coupled groundwater and surface-water flow model to simulate the hydrologic system of the SACVW and provide annual and average water budgets for 1948–2018 water years. Results from the SACIM indicated that between 1948 and 2018, total groundwater from storage (storage depletion) for the period was 453,300 acre-feet (acre-ft). Agricultural pumpage was the largest discharge and accounted for a total of 1,020,000 acre-ft of groundwater. Increased pumpage since the mid-1980s (of which agricultural pumpage is the primary component) is tied to an increased rate of storage depletion and reduced rates of groundwater evapotranspiration and surface leakage (groundwater discharge to the surface and soil zone). The increased pumpage also reduced subsurface inflow to Barka Slough, resulting in a decline in upward flow through the underlying hydrogeologic units and surface leakage. In addition to quantifying historical changes in the integrated hydrologic system, the SACIM is a tool than can be used by water managers to evaluate the effects of different climatic and hydrologic conditions and management strategies.

California↗

USGS2022

The thermal landscape of the Willamette River—Patterns and controls on stream temperature and implications for flow management and cold-water salmonids

Water temperature is a primary control on the health, diversity, abundance, and distribution of aquatic species, but thermal degradation resulting from anthropogenic influences on rivers is a challenge to threatened species worldwide. In the Willamette River Basin, northwestern Oregon, spring-run Chinook salmon ( Oncorhynchus tshawytscha ) and winter-run steelhead ( O. mykiss ) are formerly abundant cold-water-adapted species that are now protected under the Endangered Species Act. Among the challenges to the health of cold-water salmonids in the Willamette River Basin, disruptions in the seasonal patterns of stream temperature imposed by 13 large, multipurpose dams on tributaries to the Willamette River, as well as temperatures routinely in excess of regulatory limits in the Willamette River Basin, are contributing factors. To better understand controls on stream temperature, the sensitivity of stream temperature to flow augmentation as a management tool for suppressing high temperatures, and the implications for threatened salmonids, this study used a two-dimensional hydrodynamic and water-quality model (CE-QUAL-W2) to investigate spatial and temporal patterns of stream temperature in the Willamette River Basin. This study focused on the upper 160.4 river miles of the Willamette River from the confluence of the Middle Fork and Coast Fork Willamette Rivers (river mile 187.2) to Willamette Falls (river mile 26.8), three representative climate years (2011, a cool and wet year; 2015, an extremely hot and dry year; and 2016, a moderately hot and dry year), and a series of flow-augmentation scenarios. Model results show that the Willamette River upstream from Willamette Falls is divisible into four characteristic “thermal reaches” with similar thermal patterns, depending on tributary input, warming rate, and the timing of thermal response. In general, the Willamette River warms downstream during spring and summer, but patterns are complex, influenced by tributary inflows, and seasonally variable. Except in cool wet years (as illustrated by 2011), modeling suggests that adversely warm conditions for spring-run Chinook salmon are extensive from June or July through August. The thermal influence of flow augmentation from dam storage on four tributaries with U.S. Army Corps of Engineers dams varies spatially along the Willamette River, seasonally, and in magnitude, depending on a range of factors like distance from the Willamette River, the temperature of dam outflow, and the thermal template of tributary reaches controlling stream temperature adjustment to environmental heat fluxes. Modeling suggests that targeted flow management (via augmentation from dam storage) can reduce the extent and duration of thermally stressful conditions for Chinook salmon for short periods, but modeling suggests that flow augmentation is limited in its ability to fundamentally alter the “thermal landscape” (the entire range of temperature variation in a river system over space and time) of the Willamette River. While this research provides general insights into the thermal landscape of the Willamette River and its sensitivity to flow management, additional investigation into the thermal landscape of tributaries downstream from U.S. Army Corps of Engineers dams, as well as the thermal management of reservoirs, storage availability, and dam outflows, would be necessary to target specific management actions for supporting specified rearing or migration conditions for spring-run Chinook salmon and other cold-water-adapted species in the Willamette River Basin.

Oregon↗

USGS2023

User engagement to improve coastal data access and delivery

Executive Summary A priority of the U.S. Geological Survey (USGS) Coastal and Marine Hazards and Resources Program focus on coastal change hazards is to provide accessible and actionable science that meets user needs. To understand these needs, 10 virtual Coastal Data Delivery Listening Sessions were completed with 5 coastal data user types that coastal change hazards data are intended to serve: resource managers, consultants, local planners, State planners, and non-USGS researchers. During these listening sessions, participants revealed challenges to coastal data use including being overwhelmed by too many webtools, having a lack of capacity to search for and understand new information, facing difficulties finding data, and not understanding how to apply data. The specific coastal data and information needs described by participants are also detailed in the report and describe data gaps, a need for simpler tools, data needs that differ across spatial and temporal scales, and more outreach on coastal topics and climate change. Participants also suggested leveraging data across study sites and regions to help improve capacity issues and called for more communication and collaboration among and within Federal agencies. The synthesized information from the Coastal Data Delivery Listening Sessions provided in this report can help the USGS and those working on coastal challenges better understand barriers to coastal information use and the exact data requirements of different coastal data users.

Scientific Investigations Report↗

USGS2024

Streams, springs, and volcanic lakes for volcano monitoring

Introduction Volcanic unrest can trigger appreciable change to surface waters such as streams, springs, and volcanic lakes. Magma degassing produces gases and soluble salts that are absorbed into groundwater that feeds streams and lakes. As magma ascends, the amount of heat and degassing will increase, and so will any related geochemical and thermal signal. Subsurface magma movement can cause pressurization that alters hydrostatic head and may induce groundwater discharge. Fluid-pressure changes have been linked to distal volcano-tectonic earthquakes (White and McCausland, 2016; Coulon and others, 2017) and phreatic eruptions (for example, Yamaoka and others, 2016). Clearly, changes in groundwater and surface waters are both indicators of unrest and clues to how and where magma is rising toward the surface. Where possible, it is prudent to incorporate real-time hydrologic data into multiparameter monitoring of restless volcanoes. Hydrologic dynamics can also be tracked by changes in groundwater levels that are commonly measured in shallow boreholes (see of Flinders, A.F., Lowenstern, J.B., Coombs, M.L., and Poland, M.P., eds., Recommended capabilities and instrumentation for volcano monitoring in the United States: U.S. Geological Survey Scientific Investigations Report 2024–5062–K, 5 p., https://doi.org/10.3133/sir20245062k. ">chapter K , this volume, on boreholes; Hurwitz and Lowenstern, 2024). Although inferred to be common, relatively few volcano-hydrology anomalies are well documented, and many are essentially anecdotal (Newhall and others, 2001), reflecting the fact that high-resolution time series remain rare. Extreme examples include the 2008 eruption of Nevado del Huila, Colombia, where relatively minor phreatomagmatic eruptions were accompanied by expulsion of as much as 300 million cubic meters of groundwater from fissures high on the volcano (Worni and others, 2011), generating large lahars. Substantial decreases in flow rate from springs about 8 kilometers from the summit of Mayon Volcano, Philippines, have been noted before most eruptions in the 20th century (Newhall and others, 2001). Stream monitoring at Redoubt Volcano in 2009 allowed Werner and others (2012) to recognize that groundwater was unable to absorb (or scrub) the high flux of volcanic gas and that a high CO 2 /SO 2 precursor signal had been evident for 5 months prior to the eruption. A key to better interpreting hydrologic anomalies—or even identifying them—is therefore obtaining adequate baseline data. Most hydrologic monitoring at U.S. volcanoes has been accomplished by intermittent sampling surveys with annual or less frequent sampling (for example, https://hotspringchem.wr.usgs.gov/index.php ). More frequent sampling, however, generally is needed to establish reliable baselines. A recent hydrologic and hydrothermal monitoring experiment at 25 sites and 10 of the 12 level 4 (very high threat) volcanoes in the U.S. portion of the Cascade Range demonstrated that there is sufficient temporal variability in hydrothermal fluxes, even during quiescent periods, that one-time measurements will commonly have limited interpretive value (Crankshaw and others, 2018). Thus, surveys are best augmented with data from streamgages (for example, Evans and others, 2004; Bergfeld and others, 2008). Streamflow (water discharge) data allow measured temperature and specific conductance to be converted to heat and solute mass fluxes, which could be insightful parameters for detecting anomalous activity (McCleskey and others, 2012). At the Yellowstone Caldera, long-term monitoring of river solutes has allowed calculation of the chloride flux, a proxy for heat discharge (Hurwitz and others, 2007; McCleskey and others, 2016) from the subsurface magma. This is readily accomplished because data from streamgages are continuously recorded and archived by the U.S. Geological Survey (USGS) National Water Information System (NWIS) (USGS, 2024). Similar studies on stratovolcanoes or shield volcanoes would be scientifically useful, and yet are logistically challenging, requiring streamgages on numerous radial drainages complemented by either frequent manual sampling or numerous deployments of equipment to measure water temperature and specific conductance as a proxy for water chemistry. Another challenge is that some volcanic areas, especially shield volcanoes, are characterized by near-surface porous rocks and soils, such that surface streams are rare and replaced by distant, dilute large-volume springs with only a trace of any original volcanically sourced water (Manga, 2001; Hurwitz and others, 2021). Volcanic lakes are worthy of special attention for monitoring efforts, as their temperature and composition can provide evidence of increased flux of volatile-rich fluids from below. Quantifying changes in volatile and heat release from magma can be simpler in lakes than for volcanoes with radial drainages and no major lakes. Moreover, volcanic lakes pose a range of hazards themselves, including phreatomagmatic eruptions, debris flows, flank collapse, tsunamis, and toxic gas release (Mastin and Witter, 2000; Delmelle and others, 2015; Manville, 2015; Rouwet and others, 2015)—hazards that have historically been responsible for substantial loss of life at many volcanoes worldwide (Manville, 2015). Catastrophic CO 2 release at Lake Nyos, Cameroon, in 1986 suffocated about 1,750 people and about 3,500 livestock and was probably triggered by a large landslide into the gas-saturated lake (Kling and others, 1987; Evans and others, 1993). Gas-charged springs in Soda Bay within Clear Lake (California) have caused almost a dozen deaths to bathers in the past hundred years (ABC News, 2000). A 2005 example of lake overturn and abundant gas release was documented at Mount Chiginagak in Alaska (Schaefer and others, 2008) but did not result in any human casualties. Although thermally stratified lakes, which promote trapping of exsolved magmatic gas, tend to develop in tropical regions, the phenomenon can also arise where salinity creates meromixis (a condition in which a lake does not mix completely), as occurs in Mono Lake, California (Jellison and Melack, 1993; Jellison and others, 1998). If magma erupts or flows into a lake, the interaction between hot magma and cold water can be explosive (Mastin and others, 2004; Zimanowski and others, 2015) and substantially expand the area affected by the eruption. Another hazard is the breaching of crater rims by landslides triggered by volcanic and (or) seismic activity. Under some circumstances, substantial volumes of water can be displaced, leading to large floods and lahars. Late Holocene lake flooding from Aniakchak Crater in the Alaska Peninsula (Waythomas, 2022) and from Paulina Lake in Newberry Crater, Oregon (Chitwood and Jensen, 2000), caused by the failure of outlet sills, testify to the substantial hazards at lake-filled calderas. Several volcanic systems in the United States host lakes known to receive heat and gas from underlying magma. These lakes vary widely in area, depth, and chemical composition. Lakes are present at level 4 volcanoes, including Crater Lake and Newberry Volcano in Oregon; Yellowstone Caldera in Wyoming; Long Valley Caldera, Clear Lake volcanic field, Medicine Lake, and Salton Buttes in California; and Aniakchak Crater, Mount Katmai, Fisher Caldera, Mount Okmok, and Kaguyak Crater, among others, in Alaska. A water lake was present in Halemaʻumaʻu, the crater of Kīlauea, Hawai‘i (fig. F1), from October 2019 to December 2020. Level 3 volcanoes with lakes include Mono Lake volcanic field (Calif.), Mount Bachelor (Ore.), Ukinrek Maars and Mount Chiginagak (Alaska), and Soda Lake (Nevada). In addition, there are lakes at many levels 1 and 2 volcanoes. In the United States, there are no strongly acidic lakes that receive abundant input of magmatic gas, such as those found at Mount Ruapehu (New Zealand), Ijen and Kelud (Indonesia), and Poás (Costa Rica). Nevertheless, many contain fluids that provide clues to magmatic processes below. Since publication of a previous report on recommended instrumentation for volcano monitoring (Moran and others, 2008), continuous hydrologic monitoring has become increasingly feasible. However, changes in water pressure, temperature, and chemistry remain, in general, poorly studied phenomena at volcanoes (Sparks, 2003; National Academies of Sciences, Engineering, and Medicine, 2017). Recent efforts by the USGS have included the temporary study of Cascade Range volcanoes, which included frequent (15 minute to hourly) temporal sampling of temperature, depth, and conductivity (Crankshaw and others, 2018; Ingebritsen and Evans, 2019). At Yellowstone Caldera, many streamgages have now added thermistors and specific conductance sensors, allowing estimation of time-dependent chloride flux as a proxy for variations in subsurface heat flux (McCleskey and others, 2012, 2016). Efforts to better understand lakes have also accelerated, with bathymetric mapping and sampling carried out at several locations in the United States. Especially thorough work was done at Yellowstone Lake thanks to the Hydrothermal Dynamics of Yellowstone Lake (HD-YLAKE, https://hdylake.org ) project, funded primarily by the National Science Foundation. In addition to geophysical surveys and recovery of cores and other samples, HD-YLAKE investigations included remotely operated vehicle (ROV) investigations of hydrothermal vents on the lake floor (fig. F2). Data collected by the ROV provided a better understanding of the thermal and chemical influx from lake-bottom hydrothermal systems (Sohn and others, 2017). In this chapter, we focus on detecting changes in the chemistry, temperature, discharge, or water levels of streams, springs, and lakes that can be caused by seismicity, volumetric strains, or increases in gas flux associated with ascending magma. There is unavoidable overlap with other chapters of this report. Samples of water and gas can also be obtained in boreholes ( of Flinders, A.F., Lowenstern, J.B., Coombs, M.L., and Poland, M.P., eds., Recommended capabilities and instrumentation for volcano monitoring in the United States: U.S. Geological Survey Scientific Investigations Report 2024–5062–K, 5 p., https://doi.org/10.3133/sir20245062k. ">chapter K , this volume; Hurwitz and Lowenstern, 2024), both shallow and deep. Gas monitoring ( of Flinders, A.F., Lowenstern, J.B., Coombs, M.L., and Poland, M.P., eds., Recommended capabilities and instrumentation for volcano monitoring in the United States: U.S. Geological Survey Scientific Investigations Report 2024–5062–E, 11 p., https://doi.org/10.3133/sir20245062e.">chapter E , this volume; Lewicki and others, 2024) relies in part on samples from springs and wells, particularly where measurable gas plumes are absent. Water acts as a trigger and lubricant for landslides and sediment-rich floods, and so hydrology has obvious relevance for lahar monitoring, as discussed in of Flinders, A.F., Lowenstern, J.B., Coombs, M.L., and Poland, M.P., eds., Recommended capabilities and instrumentation for volcano monitoring in the United States: U.S. Geological Survey Scientific Investigations Report 2024–5062–H, 6 p., https://doi.org/10.3133/sir20245062h. ">chapter H (this volume; Thelen and others, 2024). Shared situational awareness among scientists engaged in geophysical, gas, and hydrologic monitoring will improve overall understanding of the volcanic hazard.

Scientific Investigations Report↗

USGS2024

Monitoring marine eruptions

Introduction Submarine volcanoes produce much of the same seismicity and eruptive activity as subaerial volcanoes and can pose hazards to society. Although they can be monitored with similar techniques and methods as described in other chapters of this volume, their submerged location brings unique challenges. This chapter addresses these challenges and provides recommendations for monitoring volcanoes fully or partly in marine environments to meet the capabilities described in other chapters of this volume. The United States and its territories host dozens of submarine volcanoes with most (around 60) in the Commonwealth of the Northern Mariana Islands. Approximately 20 of the Northern Mariana Islands submarine volcanoes are known to be hydrothermally active, and 10 have confirmed eruptions since the 1950s (for example, Baker and others, 2008; Tepp and others, 2019a). Nine of those volcanoes were considered by the National Volcanic Threat Assessment (Ewert and others, 2018) to have a combination of eruptive type and summit depth that poses a higher risk of hazardous eruptions, although only one was listed as a moderate (level 3) threat. Other notable submarine volcanoes of interest to the United States that have historically erupted are Axial Seamount off the Washington State coast, Kamaʻehuakanaloa in Hawaiʻi, and Vailuluʻu seamount in American Samoa. All of these, however, have a low risk of hazards because of their depth (greater than 600 meters below sea level) and eruptive type and so are not included in the National Volcanic Threat Assessment. In addition to submarine volcanoes, the submerged flanks of island volcanoes can also be a source of hazardous submarine eruptions—for example, the 1877 eruption of Mauna Loa, Hawai‘i, in Kealakekua Bay (Wanless and others, 2006). The most notable submarine eruption in recent times was the 2022 eruption of Hunga Tonga–Hunga Haʻapai in Tonga, which was one of the largest eruptions on Earth in the past 100 years. It created a massive volcanic plume, unprecedented shock waves, and far-reaching tsunami (Lynett and others, 2022). Other recent submarine eruptions in the Pacific Ocean Basin have produced subaerial plumes that reached aircraft heights (Carey and others, 2014) and large pumice rafts that can affect marine traffic and harbors (for example, Jutzeler and others, 2014; Kornei, 2019). These examples illustrate the potential hazards of major submarine eruptions. Yet, submarine volcanoes are largely unmonitored, and many eruptions occur that are unnoticed or only identified hours or days afterward. Within U.S. territory, submarine volcanoes in the Northern Mariana Islands have been known to produce eruptive activity that can affect society. Reports from fishermen and other marine vessels in the Northern Mariana Islands have noted underwater explosions, sea-surface discoloration, and bubbling water, all of which are known to be signs of submarine volcanic activity. South Sarigan seamount, located about 160 kilometers (km) north of Saipan, erupted in 2010 from greater than 150 meters below the sea surface, resulting in a gas and ash plume that reached more than 11.9 km into the atmosphere (for example, Searcy, 2013; Embley and others, 2014), high enough to affect international air traffic. Precursory and co-eruptive seismicity was detected on the regional Northern Mariana Islands seismic network (Searcy, 2013) and on global monitoring instruments (Green and others, 2013). Monitoring of submarine volcanoes is best accomplished with marine-based instrumentation, which is also useful for monitoring small island volcanoes that may not have the land area necessary for comprehensive subaerial monitoring. The primary marine-based instrumentation used for submarine volcanoes includes ocean-bottom pressure sensors to assess sea-floor deformation, ocean-bottom seismometers (OBSs) to detect seismicity, and both moored and ocean-bottom hydrophones to detect submarine explosions. Other sensors offer important monitoring data, such as turbidity, temperature, and chemistry of hydrothermal emissions. Marine-based instruments are typically deployed in campaign-style networks with no real-time telemetry owing to cost considerations and technical limitations. However, when necessary, marine instruments can be operated in real time using cables to transmit data to land-based facilities; other technologies for this purpose are in use or in development, such as acoustic transmission from the instrument to a moored buoy (Matsumoto and others, 2016) and a winch-based system with a satellite antenna that is part of the instrument mooring (Matsumoto and others, 2019). Emerging technologies for marine-based monitoring may be considered as part of a future monitoring plan. These technologies include ocean gliders and floats with on-board hydrophones that have been used to record earthquakes and submarine eruptions (for example, Matsumoto and others, 2013; Sukhovich and others, 2015) and fiber-optic cables that have been used as strainmeters to detect earthquakes (for example, Marra and others, 2018; Lindsey and others, 2019). Land-based instruments and satellites can also provide some capability for monitoring submarine volcanoes, but they provide more limited observations than marine-based instrumentation.

Scientific Investigations Report↗

USGS2026

Salinas Valley integrated hydrologic and reservoir operations models, Monterey and San Luis Obispo Counties, California

The area surrounding the Salinas Valley groundwater basin in Monterey and San Luis Obispo Counties of California is a highly productive agricultural area, contributes substantially to the local economy, and provides a substantial portion of vegetables and other agricultural commodities to the Nation. This region of California provides about half of the Nation’s lettuce, celery, broccoli, and spinach each year. Thus, this agricultural area provides substantial volumes of agricultural products not just for California but for the United States. Changes in population and increased agricultural development, which includes a shift toward more water-intensive crops, and climate variability, have put increasing demand on both surface-water and groundwater resources in the valley. This situation has resulted in water management challenges in the Salinas Valley that generally relate to the distribution of the water supply throughout the basin. Where and when the water is present in the surface and subsurface does not coincide with where and when the water is needed. Historically, to deal with the distribution issue, water has been used conjunctively in the valley. Conjunctive use is a water management strategy that coordinates surface-water and groundwater use to maximize water availability. Groundwater is used throughout the Salinas Valley to meet water demands when surface-water supplies are insufficient. The availability of surface water is constrained by climate. Precipitation and streamflow vary seasonally and year to year. Although there are two reservoirs in the Salinas Valley to capture and store water during wet periods, the only conveyance of reservoir water to coastal agricultural areas is the Salinas River. Increasing demand for groundwater and surface-water resources throughout the Salinas Valley has resulted in undesirable effects from unsustainable water use, such as surface-water depletion, groundwater-level declines, storage depletion in the principal aquifers, and seawater intrusion. To address these escalating issues, local communities, water management agencies, and groundwater sustainability agencies are evaluating how to sustainably manage both their surface-water and groundwater resources. To meet water demands and reduce the undesirable effects of unsustainable water use, continued conjunctive management of surface water and groundwater would ideally incorporate strategies to deal with increases in demand and climate variability. To evaluate the challenging water management issues in the Salinas Valley, the U.S. Geological Survey, Monterey County Water Resources Agency, and the Salinas Valley Basin Groundwater Sustainability Agency developed a comprehensive suite of models that represent the Salinas Valley hydrogeologic system called the Salinas Valley System Model. The geologic framework is known as the Salinas Valley Geologic Framework and was developed to characterize the subsurface using various topographic and geologic data sources, including information on hydrogeologic units, their surfaces and extents, geologic structures, lithology, and elevations from borehole data and cross sections, as well as details on faults and existing models. The surface-water model is called the Salinas Valley Watershed Model and simulates the Salinas River watershed. Monthly surface-water inflows into the integrated hydrologic model domain were simulated using the Salinas Valley Watershed Model. The historical model uses historical climate data, water and land use data, and reservoir releases to simulate agricultural operations, including landscape water demands, diversions, and reclaimed wastewater. The operational model adds an embedded reservoir operations framework to the simulation of the historical model that allows specified operational rules to simulate reservoir releases and changes in reservoir storage. The operational model assumes current reservoir operations and constant land use, which differs from historical conditions. Thus, the operational model is a hypothetical baseline model that can be used by local water managers to evaluate and quantify potential benefits of water supply projects. Together, the geologic framework, watershed, historical, and operational models form a tool that can be used to simulate irrigated agriculture and associated reservoir operations of the integrated hydrologic system of the Salinas Valley.

California↗

USGS2026

Assessing the state of hydrologic science in the Upper Klamath Basin—A comprehensive review of data, tools, and models

Water demand in the Upper Klamath Basin (UKB) from various stakeholders and ecological needs often outstrips available supply, leading to persistent management challenges. This study reviews the state of hydrologic science within the UKB as of 2025—specifically, the tools, data, and models available for assessing five key components of the water system: (1) surface water; (2) precipitation; (3) evapotranspiration; (4) groundwater; and (5) water use. The UKB water supply is critical for Native American communities, regional agriculture, and federally listed fishes and faces challenges from competing needs, climate variability, and operational/regulatory requirements. We assess existing datasets, regional and national models, and historical studies to understand the available resources and identify gaps that may hinder integrated water assessments and management. Our findings indicate areas where improvements in data collection and model precision could improve the accuracy of water-availability forecasts and support water-management practices. This review can inform near-term forecasting, assist in optimizing water-resource data collection and management strategies, and support regional water-availability assessments of the basin.

Oregon↗

USGS2023

Creating oriented and precisely sectioned mineral mounts for in situ chemical analyses—An example using olivine for diffusion chronometry studies

Diffusion chronometry is now a widely applied methodology for determining the rates and timescales of geologic processes from the chemical zoning observed in minerals. Despite the popularity of the method, several challenges still remain during its application, including: (1) the random sectioning of minerals either in thin sections or grain mounts in which both off-center and oblique sections contribute substantial uncertainty to modeled timescales and (2) diffusion anisotropy needs to be accounted for in models, which generally requires determining the principal crystallographic axes of the mineral using electron backscatter diffraction, a technique that is both challenging and limiting because few scanning electron microscopes have an electron backscatter detector. This guide developed by the U.S. Geological Survey focuses on a step-by-step methodology for mounting individually oriented minerals that are sectioned through their cores prior to polishing for analytical work. Using this technique, one can significantly reduce the uncertainties associated with off-center sections and minimize or completely remove the need for determining crystallographic orientation via electron backscatter diffraction analyses. This report is presented as a guide for using the technique on olivine crystals but can be applied to any minerals that can be extracted for analysis. Two variations of the methodology are included here: (1) The individual crystal method that entails mounting individually sectioned single crystals and crystal groups and (2) the whole mount method in which multiple single crystals or crystal clusters are mounted and sectioned at the same time.

Techniques and Methods↗

USGS1998

Correlation between plasma component levels of cultured fish and resistance to bacterial infection

Mortalities of yellowtail Seriola quinqueradiata artificially infected with Lactococcus garvieae and of rainbow trout Oncorhynchus mykiss artificially infected with Vibrio anguillarum were compared with the levels of plasma components measured prior to challenge. The levels of plasma total cholesterol, free cholesterol and phospholipid of fish surviving infection were significantly higher in both yellowtail and rainbow trout than those of fish which died during the challenge test. Mortality of yellowtail with plasma total cholesterol levels lower than 250 mg/100 ml was significantly higher than that of fish which had cholesterol levels higher than 275 mg/100 ml (p < 0.05). Rainbow trout whose cholesterol was lower than 520 mg/100 ml suffered a significantly higher mortality due to vibriosis than fish having cholesterol levels higher than 560 mg/100 ml (p < 0.005). These results indicate that low levels of plasma lipid components may be an indicator of lowered disease resistance in cultured fish.

Fish Pathology↗

USGS2021

Riverscape-scale modeling of fundamentally suitable habitat for mussel assemblages in an Ozark River system, Missouri

Identifying the physical habitat characteristics associated with riverine freshwater mussel assemblages is challenging but crucial for understanding the causes of mussel declines. The occurrence of mussels in multispecies beds suggests that common physical factors influence or limit their occurrence. Fine-scale geomorphic and hydraulic factors (e.g., scour, bed stability) are predictive of mussel-bed occurrence, but they are computationally challenging to represent at intermediate or riverscape scales. We used maximum entropy (MaxEnt) modeling to evaluate associations between riverscape-scale hydrogeomorphic variables and mussel-bed presence along 530 river km of the Meramec River basin, USA, to identify river reaches that are fundamentally suitable for mussels as well as those that are not. We obtained the locations of mussel beds from an existing, multiyear dataset, and we derived river variables from high-resolution, open-source datasets of aerial imagery and topography. Mussel beds occurred almost exclusively in reaches identified by our model as suitable; these were characterized by laterally stable channels, absence of adjacent bluffs, proximity to gravel bars, higher stream power, and larger areas of contiguous water (a proxy for drought vulnerability). We validated our model findings based on model sensitivity using a set of mussel-bed locations not used in model development. These findings can inform how resource managers allocate survey, monitoring, and conservation efforts.

Missouri↗

USGS1993

Determination of buoyant density and sensitivity to chloroform and freon for the etiological agent of infectious salmonid anaemia

Plasma was collected from Atlantic salmon Salrno salar with acute infectious salmon anaemia (ISA) and used to challenge Atlantic salmon parr by intraperitoneal injection. Treatment of plasma with the lipid solvent, chloroform, showed that the etiological agent of ISA contained essential lipids, probably as a viral envelope. Some infectivity remained following treatment with freon. Injection challenges using fractions from equilibrium density gradient centrifugation of plasma from fish with acute ISA revealed a band of infectivity in the range 1.184 to 1.262 g cm-3. The band was believed to conta~n both complete ISA-virus particles and infectious particles lacking a complete envelope, nucleocapsid or genome. Density gradient centrifugation of infectious plasma for enrichment of the putative ISA virus appeared to offer a suitable method for obtaining virus-specific nucleic acid for use in the construction of cDNA libraries.

Diseases of Aquatic Organisms↗

USGS1994

Involvement of rainbow trout leucocytes in the pathogenesis of infectious hematopoietic necrosis

Rainbow trout Oncorhynchus myluss leucocytes were tested for their ability to support replication of infectious hematopoietic necrosis virus (IHNV). Viral replication occurred in vitro uslng leucocytes cultured from peripheral blood, kidney, and thymus where viral titers peaked at 2 to 4 d post-inoculation. Leucocytes collected from trout following waterborne challenge with IHNV were cocultured on EPC cell monolayers. These assays detected IHNV in leucocytes infected in vivo as early as 6 h post-exposure before the challenge virus had undergone replication. These data showed that leucocyte populations could serve as target cells in the initial phase of IHNV infection.

Diseases of Aquatic Organisms↗

USGS2010

Chronic and persistent viral hemorrhagic septicemia virus infections in Pacific herring

Chronic viral hemorrhagic septicemia virus (VHSV) infections were established in a laboratory stock of Pacific herring Clupea pallasii held in a large-volume tank supplied with pathogen-free seawater at temperatures ranging from 6.8 to 11.6°C. The infections were characterized by viral persistence for extended periods and near-background levels of host mortality. Infectious virus was recovered from mortalities occurring up to 167 d post-exposure and was detected in normal-appearing herring for as long as 224 d following initial challenge. Geometric mean viral titers were generally as high as or higher in brain tissues than in pools of kidney and spleen tissues, with overall prevalence of infection being higher in the brain. Upon re-exposure to VHSV in a standard laboratory challenge, negligible mortality occurred among groups of herring that were either chronically infected or fully recovered, indicating that survival from chronic manifestations conferred protection against future disease. However, some survivors of chronic VHS infections were capable of replicating virus upon re-exposure. Demonstration of a chronic manifestation of VHSV infection among Pacific herring maintained at ambient seawater temperatures provides insights into the mechanisms by which the virus is maintained among populations of endemic hosts.

Diseases of Aquatic Organisms↗

USGS2013

Virulence of viral hemorrhagic septicemia virus (VHSV) genotypes Ia, IVa, IVb, and IVc in five fish species.

The susceptibility of yellow perch Perca flavescens , rainbow trout Oncorhynchus mykiss , Chinook salmon O. tshawytscha , koi Cyprinus carpio koi , and Pacific herring Clupea pallasii to 4 strains of viral hemorrhagic septicemia virus (VHSV) was assessed. Fish were challenged via intraperitoneal injection with high (1 × 10 6 plaque-forming units, PFU) and low (1 × 10 3 PFU) doses of a European strain (genotype Ia), and North American strains from the West coast (genotype IVa), Great Lakes (genotype IVb), and the East coast (genotype IVc). Pacific herring were exposed to the same VHSV strains, but at a single dose of 5 × 10 3 PFU ml -1 by immersion in static seawater. Overall, yellow perch were the most susceptible, with cumulative percent mortality (CPM) ranging from 84 to 100%, and 30 to 93% in fish injected with high or low doses of virus, respectively. Rainbow trout and Chinook salmon experienced higher mortalities (47 to 98% CPM) after exposure to strain Ia than to the other virus genotypes. Pacific herring were most susceptible to strain IVa with an average CPM of 80% and moderately susceptible (42 to 52% CPM) to the other genotypes. Koi had very low susceptibility (≤5.0% CPM) to all 4 VHSV strains. Fish tested at 7 d post challenge were positive for all virus strains, with yellow perch having the highest prevalence and concentrations of virus, and koi the lowest. While genotype Ia had higher virulence in salmonid species, there was little difference in virulence or host-specificity between isolates from subtypes IVa, IVb, and IVc.

Diseases of Aquatic Organisms↗

USGS2015

Testing of candidate non-lethal sampling methods for detection of Renibacterium salmoninarum in juvenile Chinook salmon Oncorhynchus tshawytscha

Non-lethal pathogen testing can be a useful tool for fish disease research and management. Our research objectives were to determine if (1) fin clips, gill snips, surface mucus scrapings, blood draws, or kidney biopsies could be obtained non-lethally from 3 to 15 g Chinook salmon Oncorhynchus tshawytscha , (2) non-lethal samples could accurately discriminate between fish exposed to the bacterial kidney disease agent Renibacterium salmoninarum and non-exposed fish, and (3) non-lethal samples could serve as proxies for lethal kidney samples to assess infection intensity. Blood draws and kidney biopsies caused ≥5% post-sampling mortality (Objective 1) and may be appropriate only for larger fish, but the other sample types were non-lethal. Sampling was performed over 21 wk following R. salmoninarum immersion challenge of fish from 2 stocks (Objectives 2 and 3), and nested PCR (nPCR) and real-time quantitative PCR (qPCR) results from candidate non-lethal samples were compared with kidney tissue analysis by nPCR, qPCR, bacteriological culture, enzyme-linked immunosorbent assay (ELISA), fluorescent antibody test (FAT) and histopathology/immunohistochemistry. R. salmoninarum was detected by PCR in >50% of fin, gill, and mucus samples from challenged fish. Mucus qPCR was the only non-lethal assay exhibiting both diagnostic sensitivity and specificity estimates >90% for distinguishing between R. salmoninarum -exposed and non-exposed fish and was the best candidate for use as an alternative to lethal kidney sample testing. Mucus qPCR R. salmoninarum quantity estimates reflected changes in kidney bacterial load estimates, as evidenced by significant positive correlations with kidney R. salmoninarum infection intensity scores at all sample times and in both fish stocks, and were not significantly impacted by environmental R. salmoninarum concentrations.

Diseases of Aquatic Organisms↗

USGS2022

Three decades of stranding data reveal insights into endangered hawksbill sea turtles in Hawai‘i

Hawksbill sea turtles Eretmochelys imbricata inhabiting the Hawaiian Islands are extremely rare and listed as endangered under the US Endangered Species Act. The paucity of data on basic hawksbill ecology continues to hinder effective management of the species. We analyzed stranding data collected between 1984 and 2018 to gain insights into the distribution, demography, and conservation challenges facing hawksbills in Hawai‘i. In doing so, we present a comprehensive description of the population across developmental stages and rank threats that may be impeding their successful recovery. Over the >30 yr data set, we recorded a total of only 111 juvenile and adult hawksbill stranding events. Interactions with nearshore recreational fishing gear were documented for a large proportion (48.6%) of stranding events in the Hawaiian Islands, identifying this as the primary management challenge for the species. Stranding events were biased towards females (female to male sex ratio of 4.8:1.0), which may be indicative of the population as a whole. Even though the majority of hawksbills nest on the islands of Hawai‘i Moloka‘i, and Maui, the greatest number of juvenile to adult strandings was found to be on the island of Oahu (n = 47). Temporal distribution of the majority of adult hawksbill strandings (72.2%) occurred during a 4 mo period between June and September. We discuss these and other findings that help identify future research and conservation efforts to mitigate anthropogenic threats in Hawai‘i for this enigmatic population.

Hawaii↗

USGS2022

Endangered Cape Sable seaside sparrow ecology: Actions towards recovery through landscape-scale ecosystem restoration

Understanding the ecology of endangered taxa and the factors affecting their population growth and decline is imperative for their recovery. In the southeastern USA, the Everglades wetland ecosystem supports a high diversity of species and communities, including many endemic and imperiled taxa, such as the federally endangered Cape Sable seaside sparrow Ammospiza maritima mirabilis (CSSS). The Everglades, once a completely connected wetland with a slow-moving sheet flow of water, is now compartmentalized into separated wetland units where water distribution is managed year-round. The CSSS is affected by, and at the crux of, many Everglades ecosystem restoration decisions. The CSSS faces conservation challenges, including limited habitat availability, low population numbers, dispersal limitations, and constraints on suitable breeding conditions owing to wetland water levels. Despite these challenges, ecological knowledge of the factors affecting CSSS population numbers in the context of ongoing ecosystem-level restoration can help inform protection of this bird while restoring the Everglades. Existing research shows target hydroperiods between 90 and 210 days, a minimum of 90 consecutive dry days during the breeding season, and non-breeding season fires approximately every 5-10 years may aid in CSSS recovery. There are numerous tools and models to support habitat and water management for the CSSS, and the most recent ecosystem-level water operations plan for the Everglades indicates potential for increased CSSS habitat. Here, we provide a review on the ecology of the CSSS, factors affecting population decline, and ecosystem-level restoration actions that may aid in CSSS recovery.

Dlorida↗