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USGS2009

Depletion of isoeugenol residues from the fillet tissue of AQUI-S™ exposed rainbow trout ( Oncorhynchus mykiss )

There is a critical need in U.S. public aquaculture and fishery management for an approved sedative that allows for the immediate release of fish after sedation. AQUI-S TM is a fish anesthetic/sedative approved for use in several countries and until recently was being developed in the U.S. as a sedative for immediate release of fish after sedation. The U.S. National Toxicology Program reported that isoeugenol (the active ingredient in AQUI-S TM ) exposed male mice showed clear evidence of carcinogenicity, therefore efforts within the U.S. Department of Interior to develop AQUI-S TM as a sedative that allows for immediate release ceased. Despite the ruling, AQUI-S TM still has the potential to be approved as an anesthetic with a short withdrawal time. Among the data required to gain approval for use in the U.S. are data describing the composition and depletion of all AQUI-S TM residues from fish fillet tissue. A total residue depletion study for AQUI-S TM was conducted by exposing market-sized rainbow trout, Oncorhynchus mykiss (mean weight, 502.7 ± 54 g; s.d.) to 8.9 mg/L of 14 C-[URL]-isoeugenol for 60 min in 17 °C water. The 14 C-[URL]-isoeugenol was mixed with a surfactant resulting in a mixture that mimicked AQUI-S TM . Groups of fish ( n = 6) were sampled immediately after the exposure (0-h sample group) and at 0.5, 1, 2, and 4 h thereafter. Total isoeugenol-equivalent residue concentrations in the fillet tissue were determined by oxidizing triplicate subsamples of homogenized skin-on fillet tissue from each fish to 14 CO 2 and enumerating the radioactivity by static liquid scintillation counting. Isoeugenol concentrations in fillet tissue were determined by extracting homogenized fillet tissue with solvents and determining the isoeugenol concentrations in the extracts with high performance liquid chromatography techniques. The mean total isoeugenol-equivalent residue concentrations in the 0, 0.5, 1, 2, and 4-h sample groups were 55.4, 32.0, 19.8, 11.3, and 4.9 µg/g, respectively. The primary chemical residue in fillet tissue from all exposed fish was isoeugenol. The mean isoeugenol concentrations in the 0, 0.5, 1, 2, and 4-h sample groups were 48.9, 26.5, 15.3, 7.2, and 2.2 µg/g, respectively. The percents of the total radioactivity classified as isoeugenol in the 0, 0.5, 1, 2, and 4-h tissue extracts were 95, 73, 73, 64, and 48%, respectively.

Aquaculture↗

USGS2013

Development of a Fluvial Egg Drift Simulator to evaluate the transport and dispersion of Asian carp eggs in rivers

Asian carp are migrating towards the Great Lakes and are threatening to invade this ecosystem, hence there is an immediate need to control their population. The transport of Asian carp eggs in potential spawning rivers is an important factor in its life history and recruitment success. An understanding of the transport, development, and fate of Asian carp eggs has the potential to create prevention, management, and control strategies before the eggs hatch and develop the ability to swim. However, there is not a clear understanding of the hydrodynamic conditions at which the eggs are transported and kept in suspension. This knowledge is imperative because of the current assumption that suspension is required for the eggs to survive. Herein, FluEgg (Fluvial Egg Drift Simulator), a three-dimensional Lagrangian model capable of evaluating the influence of flow velocity, shear dispersion and turbulent diffusion on the transport and dispersal patterns of Asian carp eggs is presented. The model's variables include not only biological behavior (growth rate, density changes) but also the physical characteristics of the flow field, such as mean velocities and eddy diffusivities. The performance of the FluEgg model was evaluated using observed data from published flume experiments conducted in China with water-hardened Asian carp eggs as subjects. FluEgg simulations show a good agreement with the experimental data. The model was also run with observed data from the Sandusky River in Ohio to provide a real-world demonstration case. This research will support the identification of critical hydrodynamic conditions (e.g., flow velocity, depth, and shear velocity) to maintain eggs in suspension, assist in the evaluation of suitable spawning rivers for Asian carp populations and facilitate the development of prevention, control and management strategies for Asian carp species in rivers and water bodies.

Ecological Modelling↗

USGS2023

Guide for benthic invertebrate studies in support of Natural Resource Damage Assessment and Restoration

This guide is intended to assist with characterizing injury to freshwater benthic macroinvertebrates (BMIs) in Natural Resource Damage Assessment and Restoration (NRDAR) cases. The contents are narrowly focused on insects, crustaceans, snails, and other invertebrate fauna that are typically considered part of BMI communities and are not intended to address studies of injury to larger benthic taxa such as freshwater mussels, crayfish, or benthic fishes or amphibians. Although some percentage of the community functions as predators, BMIs are predominantly primary consumers (for example, scrapers, shredders, and filterer/gatherer feeding groups) that play an essential role in converting carbon and nitrogen from plant tissues into animal biomass for higher-order consumers, especially in flowing waters. Aquatic contaminants can disrupt the quantity and quality of energy transferred (ecosystem function) by reducing invertebrate biomass and diversity. Additionally, the accumulation of toxic residues in invertebrate tissues may be a source of exposure leading to adverse effects in higher trophic levels. The goal of NRDAR BMI assessments is to establish direct linkages of contaminant exposure to injuries reflected by changes in community structure (for example, reduced density and taxa richness) or by effects at the individual population level (for example, survival, growth, and reproduction). BMIs are infrequently the U.S. Department of Interior (DOI)-managed resource in a NRDAR case, with managed resources more frequently including migratory birds, fish, or other insectivorous vertebrates. Therefore, it is critical to have clearly defined objectives for evaluating BMIs and an understanding of how invertebrate data relate to the quantification of injuries to the DOI-managed resource. This guide is intended to assist decisions on whether or not to proceed with BMI studies, use of existing information and data for screening purposes, and what types of studies can support a BMI-injury determination. This document is intended to provide general considerations and best practices for assessing BMIs. Relevant guidance and references are listed throughout the report as sources for specific methods and analysis.

Open-File Report↗

USGS2019

Defining the limits of spectrally based bathymetric mapping on a large river

Remote sensing has emerged as a powerful method of characterizing river systems but is subject to several important limitations. This study focused on defining the limits of spectrally based mapping in a large river. We used multibeam echosounder (MBES) surveys and hyperspectral images from a deep, clear-flowing channel to develop techniques for inferring the maximum detectable depth, d m a x "> d m a x , directly from an image and identifying optically deep areas that exceed d m a x "> d m a x . Optimal Band Ratio Analysis (OBRA) of progressively truncated subsets of the calibration data provided an estimate of d m a x "> d m a x by indicating when depth retrieval performance began to deteriorate due to the presence of depths greater than the sensor could detect. We then partitioned the calibration data into shallow and optically deep ( d > d m a x "> d > d m a x ) classes and fit a logistic regression model to estimate the probability of optically deep water, P r ( O D ) "> P r ( O D ) . Applying a P r ( O D ) "> P r ( O D ) threshold value allowed us to delineate optically deep areas and thus only attempt depth retrieval in relatively shallow locations. For the Kootenai River, d m a x "> d m a x reached as high as 9.5 m at one site, with accurate depth retrieval ( R 2 = 0.94 "> R 2 = 0.94 ) in areas with d < d m a x "> d < d m a x . As a first step toward scaling up from short reaches to long river segments, we evaluated the portability of depth-reflectance relations calibrated at one site to other sites along the river. This analysis highlighted the importance of calibration data spanning a broad range of depths. Due to the inherent limitations of passive optical depth retrieval in large rivers, a hybrid field- and remote sensing-based approach would be required to obtain complete bathymetric coverage.

Idaho↗

USGS2009

Results and Interpretations of U.S. Geological Survey Data Collected In and Around the Tuba City Open Dump, Arizona

This Open-File Report was originally an Administrative Report presentation to the Bureau of Indian Affairs based on U.S. Geological Survey data that has been collected and presented in four previous reports (Open-File Reports 2009-1020, 2008-1380, and 2008-1374, and an Administrative Report on geophysical data). This presentation was given at a technical meeting requested by the BIA on March 3 and 4, 2009, in Phoenix, Arizona. The idea for this meeting was for all the technical people working on issues related to the Tuba City Open Dump site to come together and share their data collection procedures, results, interpretations, and working hypotheses. The meeting goal was to have a clear record of each party's interpretations and a summary of additional data that would be needed to solve differences of opinion. The intention of this presentation is not to provide an exhaustive summary of U.S. Geological Survey efforts at the Tuba City Open Dump site given in the four previously published Open-File Reports listed above, since these reports have already been made available. This presentation briefly summarizes the data collected for those reports and provides results, interpretations, and working hypotheses relating to the data available in these reports. The major questions about the Tuba City Open Dump addressed by the U.S. Geological Survey are (1) what are the sources for uranium and other constituents found in the ground water in and around the Tuba City Open Dump, (2) what is the current distribution of ground water contaminants away from the Tuba City Open Dump (can plume limits be delineated), and (3) what controls the mobility of uranium and other constituents in and around the Tuba City Open Dump? Data collection, results, and interpretations by the U.S. Geological Survey that address these questions are presented herein.

Open-File Report↗

USGS1997

Industrially induced changes in Earth structure at the geysers geothermal area, California

Industrial exploitation is causing clearly-measurable changes in Earth structure at The Geysers geothermal area, California. Production at The Geysers peaked in the late 1980s at ∼3.5 × 10³ kg s −1 of steam and 1800 MW of electricity. It subsequently decreased by about 10% per year [ Barker et al. , 1992] because of declining reservoir pressure. The steam reservoir coincides with a strong negative anomaly (∼0.16, ∼9%) in the compressional-to-shear seismic wave speed ratio V P / V S , consistent with the expected effects of low-pressure vapor-phase pore fluid [ Julian et al. , 1996]. Between 1991 and 1994 this anomaly increased in amplitude by up to about 0.07 (∼4%). This is consistent with the expected effects of continued pressure reduction and conversion of pore water to steam as a result of exploitation. These unique results show that V P / V S tomography can easily detect saturation changes caused by exploitation of reservoirs, and is a potentially valuable technique for monitoring environmental change. They also provide geophysical observational evidence that geothermal energy is not a renewable energy source.

Geophysical Research Letters↗

USGS2020

Recognition of typical antibiotic residues in environmental media related to groundwater in China (2009−2019)

The potential adverse environmental and health-related impacts of antibiotics are becoming more and more concerning. China is globally the largest antibiotic producer and consumer, possibly resulting in the ubiquity and high detection levels of antibiotics in environmental compartments. Clear status on the concentration levels and spatial distribution of antibiotic contamination in China's environment is necessary to gain insight into the establishment of legal and regulatory frameworks. This study collects information from over 170 papers reporting the occurrence and distribution of antibiotics in China's environment. A total of 110 antibiotics were detected, and 28 priority antibiotics were ubiquitous in China in almost all compartments of the environment, excluding the atmosphere. Seven dominant antibiotics in all environment compartments were identified by cluster analysis, including tetracycline, oxytetracycline, chlortetracycline, ofloxacin, enrofloxacin, norfloxacin, and ciprofloxacin. Meanwhile, sulfamethoxazole, sulfadiazine, and sulfamethazine were also frequently found in aqueous phases. Among the main basins where antibiotics were detected, the Haihe River Basin had higher median antibiotic concentrations in surface water compared to other basins, while the Huaihe River Basin had higher median concentrations in sediment. The median values of antibiotic concentrations in the sources were as follows: animal manure, 39 μg/kg (microgram per kilogram); WWTP (wastewater treatment plant) sludge, 39 μg/kg; animal wastewater, 156 ng/L (nanogram per liter); WWTP effluent: 15 ng/L. These concentrations are 1 − 2 orders of magnitude higher than that of the receptors (soil, 2.1 μg/kg; sediment, 4.7 μg/kg; surface water, 8.1 ng/L; groundwater, 2.9 ng/L), whether in solid or aqueous phases. Based on the number of detected antibiotics in various environmental compartments, animal farms and WWTPs are the main sources of antibiotics, and surface water and sediment are the main receptors of antibiotics. Hierarchical clustering identified the two main pathways of antibiotic transfer in various environmental compartments, which are from animal wastewater/WWTP effluent to surface water/sediment and from animal manure/WWTP sludge to soil/groundwater.

Journal of Hazardous Materials↗

USGS2008

Anatomy and dynamics of a floodplain, Powder River, Montana, U.S.A.

Centimeter-scale measurements on several Powder River floodplains provide insights into the nature of overbank depositional processes that created the floodplains; during a 20-year period after a major flood in 1978. Rising stages initially entered across a sill at the downriver end of the floodplains. Later, as stages continued to rise, water entered the floodplains through distinct low saddles along natural levees. The annual maximum depth of water over the levee crest averaged 0.19 in from 1983 through 1996, and the estimated flow velocities were approximately 0.15 m s-1. Water ponded in the floodplain trough, a topographic low between the natural levee and the pre-flood riverbank, and mud settled as thin layers of nearly constant thickness. Mud layers alternated with sand layers, which were relatively thick near the channel. Together, these beds created a distinctive natural levee. In some locations, individual flood deposits began as a thin mud layer that gradually coarsened upwards to medium-grained sand. Coarsening-upwards sequences form initially as mud because only the uppermost layers of water in the channel supply the first overbank flows, which are rich in mud but starved of sand. At successively higher stages, fine sands and then medium sands increase in concentration in the floodwater and are deposited as fine- and medium-sand layers overlying the initial mud layer. Theoretical predictions from mathematical models of sediment transport by advection and diffusion indicate that these processes acting alone are unlikely to create the observed sand layers of nearly uniform thickness that extend across much of the floodplain. We infer that other transport processes, notably bedload transport, must be important along Powder River. Even with the centimeter-scale measurements of floodplain deposits, daily hydraulic data, and precise annual surface topographic surveys, we were unable to determine any clear correspondence between the gauged flow record of overbank floods and the depositional layers mapped in the floodplain. These results provide a detailed example of floodplain deposits and depositional processes that should prove useful for interpreting natural levee deposits in a variety of geologic settings. Copyright ?? 2008, SEPM (Society for Sedimentary Geology).

Journal of Sedimentary Research↗

USGS2019

A ship's ballasting history as an indicator of foraminiferal invasion potential--An example from Prince William Sound, Alaska, USA

We investigated the potential role of ballast sediment from coastal and transoceanic oil tankers arriving and de-ballasting in Port Valdez as a vector for the introduction of invasive benthic foraminifera in Prince William Sound, Alaska. Forty-one ballast sediment samples were obtained in 1998-1999 from 11 oil tankers that routinely discharged their ballast in Prince William Sound after sailing from other West Coast (Los Angeles/Long Beach Harbor, San Francisco Bay, and Puget Sound) or foreign ports (Japan, Korea, and China) where they originally ballasted. Forty of these samples contained benthic foraminifera, including 27 (66%) with the introduced species Trochammina hadai Uchio from nine (81%) of the ships. In all, 59 species were recovered and foraminiferal abundance peaked at 27,000 specimens per gram dry sediment. Of the 41 samples, three were stained and living benthic foraminifera were recovered in all three of them. The entrained foraminifera reflected the number of times ballasting occurred (single or multiple sources), the location of ballasting (estuarine or offshore), and post-acquisition alteration of the sediment (i.e., growth of gypsum crystals at the possible expense of calcareous tests). In temperate regions, sediment samples resulting from single-source ballasting in estuaries (SSBE), multiple-source ballasting in estuaries (MSBE), single-source ballasting offshore (SSBO), and a combination of SSBO and SSBE or MSBE, typically contained increasingly higher species richness, respectively. The potential for an invasion is dependent on the presence of viable candidates and their survivability, their abundance in the ballasting location, and the number of times ballasting occurs, most of which are evident from the ship’s ballasting history. Trochammina hadai is a good example of a successful invasive in Prince William Sound for the following reasons: 1) the species is abundant enough in West Coast and foreign ports where ballasting occurs that sufficient individuals needed for reproduction may be transported to the receiving waters; 2) Port Valdez, in particular, receives repeated and frequent inoculations from the same source ports where T. hadai is present; 3) large quantities of sediment are taken up by commercial vessels during ballasting and benthic foraminifera occur in abundance in ballast sediment; 4) ballast sediment provides a suitable environment in which benthic foraminifera can survive for extended periods of time during transport; 5) T. hadai flourishes in a wide range of temperatures and environmental conditions that characterize both the ports where ballasting takes place as well as in Port Valdez where de-ballasting occurs; and 6) the species is capable of asexual reproduction and possibly the ability to form a dormant resting stage, both of which have the potential to lower the threshold for colonization. Clearly, ballast sediment is a viable vector for the introduction of T. hadai and other invasives into Alaskan ports and elsewhere worldwide.

Alaska↗

USGS1999

Gas and Isotope Geochemistry of 81 Steam Samples from Wells in The Geysers Geothermal Field, Sonoma and Lake Counties, California

The Geysers geothermal field in northern California, with about 2000-MW electrical capacity, is the largest geothermal field in the world. Despite its importance as a resource and as an example of a vapor-dominated reservoir, very few complete geochemical analyses of the steam have been published (Allen and Day, 1927; Truesdell and others, 1987). This report presents data from 90 steam, gas, and condensate samples from wells in The Geysers geothermal field in northern California. Samples were collected between 1978 and 1991. Well attributes include sampling date, well name, location, total depth, and the wellhead temperature and pressure at which the sample was collected. Geochemical characteristics include the steam/gas ratio, composition of noncondensable gas (relative proportions of CO2, H2S, He, H2, O2, Ar, N2, CH4, and NH3), and isotopic values for deltaD and delta18O of H2O, delta13C of CO2, and delta34S of H2S. The compilation includes 81 analyses from 74 different production wells, 9 isotopic analyses of steam condensate pumped into injection wells, and 5 complete geochemical analyses on gases from surface fumaroles and bubbling pools. Most samples were collected as saturated steam and plot along the liquid-water/steam boiling curve. Steam-togas ratios are highest in the southeastern part of the geothermal field and lowest in the northwest, consistent with other studies. Wells in the Northwest Geysers are also enriched in N2/Ar, CO2 and CH4, deltaD, and delta18O. Well discharges from the Southeast Geysers are high in steam/gas and have isotopic compositions and N2/Ar ratios consistent with recharge by local meteoric waters. Samples from the Central Geysers show characteristics found in both the Southeast and Northwest Geysers. Gas and steam characteristics of well discharges from the Northwest Geysers are consistent with input of components from a high-temperature reservoir containing carbonrich gases derived from the host Franciscan rocks. Throughout the geothermal field, the carbon-isotopic composition of CO2 is consistent with derivation of carbon from Franciscan metasedimentary rocks. NH3 concentrations are high in most Geysers well fluids, and are 2-3 orders of magnitude greater than would be expected in a the gas phase exhibiting homogeneous equilibrium at normal reservoir temperatures and pressures. Evidently, NH3 is flushed from the Franciscan host rocks at a rate that exceeds the reaction rate for NH3 breakdown. Many wells show clear influence by fluids from reinjection wells where steam condensate has been pumped back into the geothermal reservoir. Six wells were resampled over the time period of this study. One of these six wells was strongly affected by a nearby injection well. Three of the six resampled wells showed some signs of decreasing liquid/ steam within the geothermal reservoir, consistent with 'drying out' of the reservoir due to steam withdrawal. However, two wells exhibited little change. Analyses of gases from five surface manifestations (fumaroles and bubbling pools) are roughly similar to the deeper geothermal samples in both chemical and isotopic composition, but are lower in soluble gases that dissolve in groundwater during transit toward the surface.

Open-File Report↗

USGS2012

Invertebrate response to changes in streamflow hydraulics in two urban areas in the United States

Stream hydrology is foundational to aquatic ecosystems and has been shown to be a structuring element for fish and invertebrates. The relations among urbanization, hydraulics, and invertebrate communities were investigated by the U.S. Geological Survey, National Water-Quality Assessment Program by using measures of stream hydraulics in two areas of the United States. Specifically, the hypothesis that the effects of urbanization on streamflow and aquatic biota are transferable across geographic regions was tested. Data from sites in Raleigh, North Carolina, and Milwaukee–Green Bay, Wisconsin, were compared and indicate that increasing urbanization has an effect on hydraulic characteristics (Reynolds number, shear stress, and stream power for example) in each metropolitan area, though limited commonality of significant correlations was noted between areas. Correspondence of significant correlations between invertebrate and hydraulic metrics between study areas also was limited. The links between urbanization, hydraulics, and invertebrates could be seen only in the Raleigh data. Connections among these three elements in the Milwaukee–Green Bay data were not clear and likely were obscured by antecedent land cover. Observed biotic differences due to hydrology and urbanization characteristics are not similar between geographic regions.

Scientific Investigations Report↗

USGS2024

Wetland geomorphology and tidal hydrodynamics drive fine-scale fish community composition and abundance

Effective restoration of tidal wetlands for fish communities requires clear goals and mechanistic understanding of the ecosystem drivers which affect fish distribution and abundance. We examined fish community responses to abiotic habitat features in two adjacent but dissimilar freshwater tidal wetlands in the Sacramento-San Joaquin Delta, CA, USA, each of which represents a potential restoration configuration. The first wetland was characterized by a broad, intertidal basin with relatively high hydrodynamic exchange with surrounding waterways. The second wetland was characterized by a dendritic network of shallow subtidal channels with relatively low hydrodynamic exchange. Fish community composition significantly differed between the two wetlands, based on permutational analysis of variance. Fish abundance within and among the two wetlands was also highly affected by specific geomorphic and hydrodynamic characteristics: distance from connection with the main external waterway, bed elevation, and water surface elevation. The physical configuration of a restored tidal wetland, in conjunction with the way tides move across the restored landscape, has strong implications for local fishes. Manipulating these elements to create a landscape mosaic of habitat configurations can be an effective tool for targeting desired restoration outcomes, such as specific fish communities or target fish densities.

California↗

USGS2017

Land change monitoring, assessment, and projection (LCMAP) revolutionizes land cover and land change research

When nature and humanity change Earth’s landscapes - through flood or fire, public policy, natural resources management, or economic development - the results are often dramatic and lasting. Wildfires can reshape ecosystems. Hurricanes with names like Sandy or Katrina will howl for days while altering the landscape for years. One growing season in the evolution of drought-resistant genetics can transform semiarid landscapes into farm fields. In the past, valuable land cover maps created for understanding the effects of those events - whether changes in wildlife habitat, water-quality impacts, or the role land use and land cover play in affecting weather and climate - came out at best every 5 to 7 years. Those high quality, high resolution maps were good, but users always craved more: even higher quality data, additional land cover and land change variables, more detailed legends, and most importantly, more frequent land change information. Now a bold new initiative called Land Change Monitoring, Assessment, and Projection (LCMAP) promises to fulfill that demand. Developed at the U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center in Sioux Falls, South Dakota, LCMAP provides definitive, timely information on how, why, and where the planet is changing. LCMAP’s continuous monitoring process can detect changes as they happen every day that Landsat satellites acquire clear observations. The result will be to place near real-time information in the hands of land and resource managers who need to understand the effects these changes have on landscapes.

General Information Product↗

USGS2008

Survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam, Northern California, 2007

This report describes a study of survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam in 2006. This was the second year of a multi-year study with the goal of determining the effects of discharge at Iron Gate Dam on survival of juvenile coho salmon downstream. The study was a collaborative effort among U.S. Geological Survey (USGS), U.S. Fish and Wildlife Service (USFWS), and the Yurok and Karuk Tribal Fisheries Departments. The goals of the study included: 1) estimating the survival of wild and hatchery juvenile coho salmon in the Klamath River downstream from Iron Gate Dam, 2) determining the effects of discharge and other covariates on their survival and migration, and 3) determining if fish from Iron Gate Hatchery could be used as surrogates for the limited source of wild fish. The major findings of the study in 2006 include: River discharges during the 2006 study period (4 April through 21 July 2006) were among the greatest on record. Average daily discharge at Iron Gate Dam was 3,956 cubic feet per second (cfs) and ranged from 997 to 10,300 cfs. Discharge at Iron Gate Dam was positively correlated with discharges of tributaries downstream due to the above average water year and frequent occurrence of spill at Iron Gate Dam. Average daily discharge near the estuary was 25,789 cfs and ranged from 4,740 to 50,600 cfs. This study was based on hatchery fish taken directly from a tank at Iron Gate Hatchery and wild fish captured in a rotary trap on the Shasta River. Releases of both groups began on 4 April when the catch of wild fish in California Department of Fish and Game‟s Shasta River rotary trap increased, but trap catches varied throughout the study period, resulting in differences in release dates of hatchery and wild fish. A total of 211 hatchery fish were released from 4 April through 26 May. Wild and hatchery fish released on a regular schedule between 25 April and 16 May 2006 were used in comparisons of the survival and migration of hatchery (N = 120) and wild (N = 162) fish. Additional analyses were performed using hatchery fish from all dates. The data and models did not support clear differences between survivals of hatchery and wild fish released on common dates, so estimates of reach survivals were made after pooling these data. Estimates of survival were lowest in the Iron Gate Dam to Scott River reach (0.813) and greatest in the Salmon River to Trinity River reach (1.000). The overall survival from river kilometer 309 (Iron Gate Hatchery) to river kilometer 33 was 0.653 (95% CI 0.578 to 0.729). Estimates of survival based on all hatchery fish releases were similar to those from release dates common to hatchery and wild fish and are similar to those in other river systems over similar distances. The migrations of hatchery and wild fish were different in the uppermost sections of the study area and were similar thereafter. A lag between release and migration, primarily upstream from the Scott River (river kilometer 234), was present in hatchery fish to a greater extent than in wild fish, resulting in differences in migration rates. Fish from both origins spent more time between release and the Scott River than in individual reaches downstream, and this was the only reach in which travel times of fish increased as discharge decreased. The travel times of hatchery and wild fish between sites were statistically similar downstream from Indian Creek (river kilometer 178). There were differences and similarities in the analyses of the effects of covariates on survivals of hatchery and wild fish. The models of covariate effects based on hatchery and wild fish released on common dates indicated effects on wild fish survival that were not supported in data from hatchery fish. However, when the entire suite of hatchery fish releases were used the results of the analyses were similar to those based on wild fish. In both instances the effects of temperature and release date were primarily in the first reach, the reach fish of both origins spent most of their time within. The signs of the effects of these covariates differed among the fish origins (negative for wild and positive for hatchery fish), presumably due to differences in their migrations in the first reach. The effects of dam discharge on survivals of hatchery and wild fish were generally similar (positive relation), and the effects on hatchery, and to a lesser extent wild, fish were largely downstream from the Scott River. This is likely due to the prolonged residence of the naïve hatchery fish, and to a lesser extent, migrant wild fish between release and the Scott River. Inasmuch as the differences between hatchery and wild fish we observed were likely those of migrants vs. non-migrants, the use of hatchery fish captured as they are migrating downstream, rather than those directly from hatchery tanks (i.e., naïve), may improve similarities between hatchery and wild fish in future studies. The data and models used in 2006 do not support the use of naïve hatchery fish as surrogates for migrant wild fish in determining the effects of discharge on survival upstream from the Scott River. This conclusion is based on the different effects of covariates in this reach that were likely attributable to the differences in hatchery and wild migration behaviors in this reach. The results of this second year of research provide insight to the migration and survival of hatchery and wild juvenile coho salmon in the Klamath River, but the results are from a single unusual water year. The results may be different during other water year types. The current information supports a positive relation between discharge at Iron Gate Dam and survival of juvenile coho salmon downstream, but additional data should be used to refine this relation. Discharge at the dam was correlated with discharges of Klamath River tributaries during this above average water year. The data and models from the 2006 study provide the first estimates of survival of these fish in the Klamath River and can be used with data from years with other water year types to examine the effects of discharge on survival. This will only be possible over a period of years in which the correlations between discharge and other factors, such as water temperature and date, are diminished. An experimental approach in which discharges are varied at Iron Gate Dam is the most direct method to determine if survivals are affected by discharge, but this may not be feasible given the limited storage capacity of the project.

California↗

USGS1988

Search for volatiles on icy satellites: I. Europa

New reflectance spectra have been obtained for both the leading and trailing sides of Europa, using the Cooled Grating Array Spectrometer (CGAS) of the NASA Infrared Telescope Facility (IRTF). The spectra are of higher precision than any yet obtained. Spectra of Europa's trailing side (central meridian longitude ≈300°) obtained in 1985 show two weak absorptions near 2.2 and 2.3 μm. Both of these features as well as others are seen in spectra obtained by R. N. Clark, R. B. Singer, P. D. Owensby, and F.P. Fanale (1980a, Bull. Amer. Astron. Soc. 12, 713–714) at similar central meridian longitude. Data obtained with an improved detector array in 1986, however, do not show the absorptions seen in the 1980 and 1985 spectra. It is not clear why the newest data do not show the apparent absorptions seen in previous years, but the suggestion is that either the 1980 and 1985 data are spurious or that the material responsible for the weak absorptions is no longer detectable. Analysis of the 1980 and 1985 data did not reveal any obvious source of systematic error capable of introducing spurious features, but we are skeptical of any explanation that cites transient deposition, movement, and/or destruction of material on Europa's trailing side to account for the nondetection of the features in the 1986 data. If the weak absorptions seen in the 1980 and 1985 data are real, they can be interpreted as indicating the transient spectroscopic presence of a molecular component on Europa's trailing side different from the water ice that is known to be the dominant surface constituent. Further monitoring is required to determine if the apparent absorptions are real.

Icarus↗

USGS2021

Extreme events trigger terrestrial and marine ecosystem collapses: A tale of two regions

We outline the multiple, cross-scale, and complex consequences of terrestrial and marine ecosystem heatwaves in two regions on opposite sides of the planet: the southwestern USA and southwestern Australia, both encompassing Global Biodiversity Hotspots, and where ecosystem collapses or features of it have occurred in the past two decades. We highlight ecosystem shifts that have clearly demonstrated a substantial change from a baseline state over time, although not necessarily across their entire distribution, with evidence of collapse at local scales. Responses to temperature extremes, such as heatwaves, encompass processes at all scales, including population level (e.g. altered demography such as survival, recruitment, and fecundity, together resulting in structural changes), community level (e.g. species compositional shifts), and ecosystem level (e.g. carbon loss), as well as physical properties altered by vegetation loss (e.g. microclimate, fire behaviour on land). These changes impact all trophic levels with foundational species losses (such as seagrasses, kelp, and trees), flowing through to vertebrates (such as sea turtles, penguins, and cockatoos). Where extensive collapse has occurred, shifts in microclimate could affect important biosphere-to-atmosphere feedbacks including fluxes of energy, carbon, and water. Such extensive changes usually do not occur in isolation and frequently interact with other disturbance processes such as fire, storms, pathogen and pest outbreaks, and anthropogenic stressors. Interactions may alter the likelihood, extent, or severity of subsequent disturbances (linked disturbances) as well as condition the ecological response and recovery (compound disturbances). In addition, if ecosystem collapse is extensive enough (e.g. tree die-off), those changes also can impact climate and ecosystems elsewhere via ecoclimate teleconnections. Increasing rates of climatic extremes will drive a host of direct and indirect feedbacks certain to produce large-scale shifts in ecological functioning at unprecedented rates. Understanding how, why, and where these shifts will occur will be critical for effective ecosystem management and climate change mitigation.

Book chapter↗

USGS2013

Preliminary assessment of bioengineered fringing shoreline reefs in Grand Isle and Breton Sound, Louisiana

Restoration of three-dimensional shell habitats in coastal Louisiana presents a valuable and potentially self-sustaining approach to providing shoreline protection and critical nekton habitat and may contribute to water quality maintenance. The use of what has been called “living shorelines” is particularly promising because in addition to the hypothesized shoreline protection services, it is predicted that, if built and located in viable sites, these living shorelines may ultimately contribute to water quality maintenance through filtration of bivalves and may enhance nekton habitat. This approach, however, has not been tested extensively in different shallow water estuarine settings; understanding under what conditions a living shoreline must have to support a sustainable oyster population, and where these reefs may provide valuable shoreline protection, is key to ensuring that this approach provides an effective tool for coastal restoration. This project gathered preliminary data on the sustainability and shoreline stabilization of three large bioengineered fringing reefs located in Grand Isle, Lake Eloi, and Lake Fortuna, Louisiana. We collected preconstruction and postconstruction physiochemical and biological data by using a before-after-control-impact approach to evaluate the effectiveness of these living shoreline structures on reducing marsh erosion, enabling reef sustainability, and providing other ecosystem benefits. Although this project was originally designed to compare reef performance and impacts across three different locations over 2 years, delays in construction because of the Deepwater Horizon oil spill resulted in reefs being built from 12 to 18 months later than anticipated. As a result, monitoring postconstruction was severely limited. One reef, Grand Isle, was completed in March 2011 and monitored up to 18 months postcreation, whereas Lake Eloi and Lake Fortuna reefs were not completed until January 2012, and only 8 months of postconstruction data are available. Data for the latter two sites thus reflect only the 2012 spring/summer seasons, which were further impacted by a direct hit by Hurricane Isaac in August 2012, which resulted in shoreward movement of approximately 14 percent of the bioengineered structures at Lake Fortuna. Given the shortened monitoring timeframe and significant differences in construction schedules, we were not able to provide a full postconstruction assessment of the sites or a full comparison of site success based on local site characteristics. Because many of the impacts that were identified for monitoring reflect long-term processes, results and data presented should be interpreted cautiously. Sustainable oyster reefs require recruitment, growth, and survival at a rate that keeps pace with mortality and shell disarticulation. Although one site failed to recruit (establishment plus survival > 50 millimeters [mm]) over two spawning seasons, two sites only had 6 months postconstruction data available for assessment. Although there are good data on the requirements for oyster growth, there is limited explicit information on the site-specific water quality, hydrodynamic, and biological interaction effects that may determine successful reef establishment. Furthermore, interannual variability can significantly affect reef establishment, and our shortened timeframe of sampling (less than one spawning season for two of the reefs; two spawning seasons for one reef), combined with a lack of prerestoration monitoring data, limit our ability to draw any conclusions about long-term reef sustainability. Bioengineered reefs are thought to provide some benefits to shoreline stabilization through their structure by immediately attenuating wave energies and directly reducing erosion rates at shorelines sheltered by the reefs but also by increasing sediment deposition behind the reefs. Preliminary data indicate differences in reef impact by site; given the short timeframe of postconstruction data at two of the sites, and differences in reef placement between sites, however, it is difficult to draw any conclusions. Longer-term data collection and further analyses comparing reef placement; local wind, wave energy, sediment transport processes; and local bathymetry may help in parameterizing sites where fringing reefs may be most beneficial for shoreline protection. In addition to basic reef sustainability and shoreline stabilization, we measured both water quality parameters and nekton abundances around the newly created reefs and adjacent reference sites. Within the timeframe of monitoring, no effect of reefs on water quality was detected at any site. Given that water quality effects are hypothesized to result from the filtration activities of bivalves, and reefs either failed to recruit (settlement plus survival to > 50 mm) or successfully recruited but only had a couple months of growth prior to this report, it was not expected that an effect would be detectable in this timeframe. Nekton such as blue crab, gulf menhaden, and anchovies were found to be more abundant on the reefs; larger, more transient species were not found to be affected by reef presence. Future work examining smaller organisms and juveniles, including more explicit studies examining why and how these organisms preferentially use oyster reefs, would be useful in the design of other bioengineered reefs and help in understanding the role of the reefs in supporting the nekton community. It is clear from the initial work that ensuring correct site selection by better understanding what local site factors influence oyster populations is key to establishing successful living shoreline reefs. Ultimately, the success of the reefs in providing any ecosystem service relies on their ability to build a viable oyster population that is self-sustaining over the long term. As many of the ecosystem processes hypothesized to result from reefs develop over the long term (4–6 years), some level of monitoring over the next few years is highly recommended in order to accurately assess the long term viability of the reefs, their provision of ecosystem services, and to provide better guidance for future projects.

Louisiana↗

USGS1977

Atlantic Margin Coring Project 1976: Preliminary Report on Shipboard and Some Laboratory Geotechnical data

This report presents reduced shipboard geotechnical data collected during the 1976 Atlantic Margin Coring Project; results of laboratory tests of specific gravity, water content, bulk density, and Atterberg limits; and sedimentation-compression e log p curves showing consolidation. A description of the procedures used at sea and in the laboratory and a short preliminary summary of the shipboard results also is included. The involvement of Marine Geotechnical Laboratory (MGL), Lehigh University, personnel in the 1976 Atlantic Margin Coring Project can be divided into two phases. In Phase One, the Lehigh nuclear-transmission densitometer was rebuilt to process cores at sea more rapidly than previously had been done in the laboratory, the equipment was assembled and tested aboard the Glomar Conception, and at-sea geotechnical measurements were made during the duration of the cruise. Data sheets were prepared for both unopened core sections (Appendix III) and split-core samples (Appendix IV). Completed data forms are on file at the MGL and at the Geological Survey in Woods Hole. Phase Two included reduction of the shipboard data, testing of all geotechnical samples taken from cores split aboard the ship, and certain other analytical work ashore utilizing the geotechnical measurements. Water content and weight/volume bulk density tests were performed at the MGL. Specific gravity and Atterberg limit tests and certain calculations were performed by Geological Survey personnel at the Corpus Christi, Texas, laboratory. During Phase One, 37 unopened, 1.5-m-long core sections were selected by Lehigh personnel for subsequent static and dynamic triaxial and consolidation testing ashore. The disposition of these cores is controlled by Geological Survey Project personnel; they are not further discussed in this report. A depth convention has been adopted in this report for the convenience of labeling core sections and analyzing the data. Each 9.2-m-long (30 ft) core liner had a maximum penetration depth referenced to the water-sediment interface; these data are given in Hathaway, et al. (1976). Each 9.2-m-long core liner was cut into six or fewer sections, each 1.5 m (5 ft) in length, aboard the ship. To the maximum penetration depth, 0.2 m was subtracted to obtain the depth at the bottom of the first 1.5 m section above the core catcher. To obtain values at the bottom of the remaining 1.5 m sections, an additional 1.5 m was added for each section. The depth of the bottom of each core section was used for all values obtained using the nuclear densitometer. Tests within core sections and samples collected from core sections were assigned depths based on the location of the test or sample within the core section. It should be clearly recognized that all depths within a 9.2-m-long core are estimates of the true depth, which cannot be uniquely calculated because of the uncertainty of the relationship of sediment contained within the core liner to true in situ depths. This report is considered to be preliminary because the author has not had access to the final lithologic logs or paleontological results, upon which a more accurate description of geotechnical results could be based. It would be inappropriate to comment on geological hazards until this information is made available.

Atlantic Ocean↗