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At least 919 records · Page 51Linked to original sources
USGS2003

Role of arachidonic acid and protein kinase C during maturation-inducing hormone-dependent meiotic resumption and ovulation in ovarian follicles of Atlantic croaker

The roles of arachidonic acid (AA) and protein kinase C (PKC) during in vitro maturation-inducing hormone (MIH)-dependent meiotic resumption (maturation) and ovulation were studied in ovarian follicles of Atlantic croaker (Micropogonias undulatus). The requirement for cyclooxygenase (COX) metabolites of AA was examined using a nonspecific COX inhibitor, indomethacin (IM), as well as two COX products, prostaglandin (PG) F2?? and PGE2, whereas the role of lipoxygenase (LOX) was investigated using a specific LOX inhibitor, nordihydroguaiaretic acid (NDGA). The involvement of PKC was examined using phorbol 12-myristate 13-acetate (PMA), a PKC activator, as well as GF109203X (GF), a specific inhibitor of PKC and 1-(5-isoquin- olinesulfonyl)-2-methylpiperazine (H7), nonspecific inhibitor of protein kinases. Genomic mechanisms were examined with the transcription-inhibitor actinomycin D (ActD) and the functionality of heterologous (oocyte-granulosa) gap junctions (GJ) with a dye transfer assay. The AA (100 ??M) and PGF2?? (5 ??M) did not induce maturation, and NDGA (10 ??M) did not affect MIH-dependent maturation. However, IM (100 ??M) partially inhibited MIH-dependent maturation. Conversely, AA and both PGs induced, and IM and NDGA inhibited, MIH-dependent ovulation in matured follicles. The PMA (1 ??g/ml) did not induce maturation but caused ovulation in matured follicles, whereas PKC inhibitors (GF, 5 ??M; H7, 50??M) did not affect MIH-dependent maturation but inhibited MIH- and PMA-dependent ovulation. The PMA-dependent ovulation was inhibited by IM but not by NDGA. In addition, ActD (5 ??M) blocked MIH-dependent, but not PMA-dependent, ovulation, and PGF2?? restored MIH-dependent ovulation in ActD-blocked follicles. The AA and PGs did not induce, and GF did not inhibit, MIH-dependent heterologous GJ uncoupling. In conclusion, AA and PKC mediate MIH-dependent ovulation but not meiotic resumption or heterologous GJ uncoupling in croaker follicles, but a permissive role of COX products of AA during maturation is possible. A novel model of MIH-dependent ovulation is proposed in which 1) LOX and COX metabolites of AA are both required for ovulation, but at upstream and downstream sites of the pathway, respectively, relative to PKC, and 2) PKC is downstream of genomic activation.

Biology of Reproduction↗
USGS2004

Evolutionary stability of mutualism: interspecific population regulation as an evolutionarily stable strategy

Interspecific mutualisms are often vulnerable to instability because low benefit : cost ratios can rapidly lead to extinction or to the conversion of mutualism to parasite–host or predator–prey interactions. We hypothesize that the evolutionary stability of mutualism can depend on how benefits and costs to one mutualist vary with the population density of its partner, and that stability can be maintained if a mutualist can influence demographic rates and regulate the population density of its partner. We test this hypothesis in a model of mutualism with key features of senita cactus ( Pachycereus schottii ) – senita moth ( Upiga virescens ) interactions, in which benefits of pollination and costs of larval seed consumption to plant fitness depend on pollinator density. We show that plants can maximize their fitness by allocating resources to the production of excess flowers at the expense of fruit. Fruit abortion resulting from excess flower production reduces pre–adult survival of the pollinating seed–consumer, and maintains its density beneath a threshold that would destabilize the mutualism. Such a strategy of excess flower production and fruit abortion is convergent and evolutionarily stable against invasion by cheater plants that produce few flowers and abort few to no fruit. This novel mechanism of achieving evolutionarily stable mutualism, namely interspecific population regulation, is qualitatively different from other mechanisms invoking partner choice or selective rewards, and may be a general process that helps to preserve mutualistic interactions in nature.

Proceedings of the Royal Society B↗
USGS2024

Evidence for recruitment-mediated decline in an Eastern box turtle (Terrapene carolina carolina) population based on a 30-year capture-recapture data set from Maryland

The Eastern box turtle ( Terrapene carolina carolina ) population at the Jug Bay Wetlands Sanctuary, Lothian, MD has been monitored continuously for 29 years (1995-2023). We used open population capture-recapture models (Jolly-Seber) to estimate annual population size, survival probability, and recruitment rate. The model allows for unknown sex of individuals and includes information on individuals found dead. Our analysis documents a long-term decline of approximately 67% in box turtle population size at the Sanctuary over this nearly three-decade period. We estimate annual survival for both males and females, which does not show a systematic increase or decrease over time, averaging about 0.90 (95% CI: 0.86, 0.93) for females and 0.97 (95% CI: 0.94, 0.98) for males. Conversely, per-capita recruitment shows a marked decline over the first 15 years of the record, suggesting that population declines may be due to reduced recruitment. Conservation efforts for the species could benefit from a formal population viability analysis to understand the relative effects of survival and recruitment on changes in population size for this long-lived species.

BioRxiv↗
USGS2025

A systematic literature review of forecasting and predictive models of harmful algal blooms in flowing waters

Occurrences of harmful algal blooms (HABs) in rivers challenge the belief that rivers are not susceptible to HABs because of their short residence times and fluctuating hydrology. Here we present a systematic literature review of predictive and forecasting models for HABs in flowing waters, including rivers, flowing in-stream reservoirs (e.g., run-of-river reservoirs and lock-and-dam systems) and tidal or estuarine systems with riverine processes. The review aimed to understand current and historical modeling approaches for predicting and forecasting river HABs, without restricting to specific taxa, such as cyanobacteria, or modeling endpoints. The review included 162 articles published over nearly 50 years, covering more than 80 rivers worldwide. Eutrophic, non-wadable rivers with in-stream obstruction were commonly modeled, though diverse environmental characteristics were reported. Most articles used algal biomass or chlorophyll as modeling endpoints, with a quarter using novel or unique endpoints. Algal toxins motivated model development in 23% of the articles, however just 5% used algal toxins as an endpoint. Only 6% of the articles modeled benthic HABs; the rest focused on pelagic HABs. There was no standard model used for modeling river HABs. Process-based models were more common (59%) than data-driven approaches (37%), with model formulations ranging from simple to complex, which contrasts with a lake-focused literature review of HAB models that found data-driven models were more common. Models in river settings shared similar input variables as those previously identified for lakes, such as water temperature, nutrients, and light availability. However, streamflow and other transport metrics took prominence in river models compared to lake models. Algal cell physiology (such as growth, predation, and motility) was routinely included as input data or as mathematical formulations in process-based models and these processes were frequently identified as an important predictor by the articles’ authors. Conversely, data-driven models rarely included these processes, instead using predictors related to environmental conditions, such as nutrients, water quality, water temperature, and streamflow. These important proxy predictors have apparent success with modeling overall algal biomass (irrespective of taxa) whereas other factors, such as those related to algal physiology and other biological processes, are likely responsible for more subtle shifts in community composition. These differences highlight the influence of data availability, especially for processes that are difficult, time-consuming, or expensive to measure, on model development and model outcomes, raising questions about the selection of modeling inputs and endpoints. Challenges to advancing river HAB modeling include the lack of site-specific model inputs representing key processes (e.g., photosynthetic parameters and predation rates), overlooked riverine environments like the benthos and side/back-channel areas, lack of information on environmental settings, and poorly reported model performance metrics. This review emphasizes opportunities for advancing river HAB modeling by learning from well-honed estuarine models, supporting current forecasting and operationalization efforts, and developing common datasets for river HAB model development and evaluation.

BioRxiv↗
USGS2022

Considerations for creating equitable and inclusive communication campaigns associated with ShakeAlert, the earthquake early warning system for the West Coast of the USA

Purpose The 2019 Global Assessment Report on Disaster Risk Reduction (GAR) cites earthquakes as the most damaging natural hazard globally, causing billions of dollars of damage and killing thousands of people. Earthquakes have the potential to drastically impact physical, social and economic landscapes; to reduce this risk, earthquake early warning (EEW) systems have been developed. However, these technical EEW systems do not operate in a vacuum; the inequities in social systems, along with the needs of diverse populations, must be considered when developing these systems and their associated communication campaigns. Design/methodology/approach This article reviews aspects of social vulnerability as they relate to ShakeAlert, the EEW system for the USA. The authors identified two theories (relationship management theory and mute group theory) to inform self-reflective questions for agencies managing campaigns for EEW systems, which can assist in the development of more inclusive communication practices. Finally, the authors suggest this work contributes to important conversations about diversity, equity and inclusion (DEI) issues within early warning systems and earthquake preparedness campaigns in general. Findings To increase inclusivity, Macnamara (2012) argues that self-reflective questioning while analyzing perspective, philosophy and approaches for a campaign can help. Specific to EEW campaigns, developers may find self-reflective questions a useful approach to increase inclusion. These questions are guided by two theories and are explored in the paper. Research limitations/implications Several research limitations exist. First, this work explores two theories to develop a combined theoretical model for self-reflective questions. Further research is required to determine if this approach and the combination of these two theories have adequately informed the development of the reflective questions. Orginality/value The authors could find little peer-reviewed work examining DEI for EEW systems, and ShakeAlert in particular. While articles on early warning systems exist that explore aspects of this, EEW and ShakeAlert, with its very limited time frames for warnings, creates unique challenges.

West Coast↗
USGS1988

The Land Analysis System (LAS) for multispectral image processing

The Land Analysis System (LAS) is an interactive software system available in the public domain for the analysis, display, and management of multispectral and other digital image data. LAS provides over 240 applications functions and utilities, a flexible user interface, complete online and hard-copy documentation, extensive image-data file management, reformatting, conversion utilities, and high-level device independent access to image display hardware. The authors summarize the capabilities of the current release of LAS (version 4.0) and discuss plans for future development. Particular emphasis is given to the issue of system portability and the importance of removing and/or isolating hardware and software dependencies.

IEEE Transactions on Geoscience and Remote Sensing↗
USGS2022

High-resolution 3D forest structure explains ecomorphological trait variation in assemblages of saproxylic beetles

Climate, topography and the 3D structure of forests are major drivers affecting local species communities. However, little is known about how the specific functional traits of saproxylic (wood-living) beetles, involved in the recycling of wood, might be affected by those environmental characteristics. Here, we combine ecological and morphological traits available for saproxylic beetles and airborne laser scanning (ALS) data in Bayesian trait-based joint species distribution models to study how traits drive the distributions of more than 230 species in temperate forests of Europe. We found that elevation (as a proxy for temperature and precipitation) and the proportion of conifers played important roles in species occurrences while variables related to habitat heterogeneity and forest complexity were less relevant. Furthermore, we showed that local communities were shaped by environmental variation primarily through their ecological traits whereas morphological traits were involved only marginally. As predicted, ecological traits influenced species' responses to forest structure, and to other environmental variation, with canopy niche, wood decay niche and host preference as the most important ecological traits. Conversely, no links between morphological traits and environmental characteristics were observed. Both models, however, revealed strong phylogenetic signal in species' response to environmental characteristics. These findings imply that alterations of climate and tree species composition have the potential to alter saproxylic beetle communities in temperate forests. Additionally, ecological traits help explain species' responses to environmental characteristics and thus should prove useful in predicting their responses to future change. It remains challenging, however, to link simple morphological traits to species' complex ecological niches.

Functional Ecology↗
USGS2014

Latitudinal and photic effects on diel foraging and predation risk in freshwater pelagic ecosystems

1. Clark & Levy ( American Naturalist , 131 , 1988, 271–290) described an antipredation window for smaller planktivorous fish during crepuscular periods when light permits feeding on zooplankton, but limits visual detection by piscivores. Yet, how the window is influenced by the interaction between light regime, turbidity and cloud cover over a broad latitudinal gradi- ent remains unexplored. 2. We evaluated how latitudinal and seasonal shifts in diel light regimes alter the foraging- risk environment for visually feeding planktivores and piscivores across a natural range of turbidities and cloud covers. Pairing a model of aquatic visual feeding with a model of sun and moon illuminance, we estimated foraging rates of an idealized planktivore and piscivore over depth and time across factorial combinations of latitude (0 – 70 ° ), turbidity (0  1 – 5 NTU) and cloud cover (clear to overcast skies) during the summer solstice and autumnal equinox. We evaluated the foraging-risk environment based on changes in the magnitude, duration and peak timing of the antipredation window. 3. The model scenarios generated up to 10-fold shifts in magnitude, 24-fold shifts in duration and 5  5-h shifts in timing of the peak antipredation window. The size of the window increased with latitude. This pattern was strongest during the solstice. In clear water at low turbidity (0  1 – 0  5 NTU), peaks in the magnitude and duration of the window formed at 57 – 60 ° latitude, before falling to near zero as surface waters became saturated with light under a midnight sun and clear skies at latitudes near 70 ° . Overcast dampened the midnight sun enough to allow larger windows to form in clear water at high latitudes. Conversely, at turbidities ≥ 2 NTU, greater reductions in the visual range of piscivores than planktivores created a window for long periods at high latitudes. Latitudinal dependencies were essentially lost during the equinox, indicating a progressive compression of the window from early summer into autumn. 4. Model results show that diel-seasonal foraging and predation risk in freshwater pelagic ecosystems changes considerably with latitude, turbidity and cloud cover. These changes alter the structure of pelagic predator – prey interactions, and in turn, the broader role of pelagic consumers in habitat coupling in lakes.

Journal of Animal Ecology↗
USGS2019

Interactive range‐limit theory (iRLT): An extension for predicting range shifts

A central theme of range‐limit theory (RLT) posits that abiotic factors form high‐latitude/altitude limits, whereas biotic interactions create lower limits. This hypothesis, often credited to Charles Darwin, is a pattern widely assumed to occur in nature. However, abiotic factors can impose constraints on both limits and there is scant evidence to support the latter prediction. Deviations from these predictions may arise from correlations between abiotic factors and biotic interactions, as a lack of data to evaluate the hypothesis, or be an artifact of scale. Combining two tenets of ecology—niche theory and predator–prey theory—provides an opportunity to understand how biotic interactions influence range limits and how this varies by trophic level. We propose an expansion of RLT, interactive RLT (iRLT), to understand the causes of range limits and predict range shifts. Incorporating the main predictions of Darwin's hypothesis, iRLT hypothesizes that abiotic and biotic factors can interact to impact both limits of a species’ range. We summarize current thinking on range limits and perform an integrative review to evaluate support for iRLT and trophic differences along range margins, surveying the mammal community along the boreal‐temperate and forest‐tundra ecotones of North America. Our review suggests that range‐limit dynamics are more nuanced and interactive than classically predicted by RLT. Many (57 of 70) studies indicate that biotic factors can ameliorate harsh climatic conditions along high‐latitude/altitude limits. Conversely, abiotic factors can also mediate biotic interactions along low‐latitude/altitude limits (44 of 68 studies). Both scenarios facilitate range expansion, contraction or stability depending on the strength and the direction of the abiotic or biotic factors. As predicted, biotic interactions most often occurred along lower limits, yet there were trophic differences. Carnivores were only limited by competitive interactions ( n = 25), whereas herbivores were more influenced by predation and parasitism (77%; 55 of 71 studies). We highlight how these differences may create divergent range patterns along lower limits. We conclude by (a) summarizing iRLT; (b) contrasting how our model system and others fit this hypothesis and (c) suggesting future directions for evaluating iRLT.

Journal of Animal Ecology↗
USGS2016

Combining citizen science species distribution models and stable isotopes reveals migratory connectivity in the secretive Virginia rail

Stable hydrogen isotope (δD) methods for tracking animal movement are widely used yet often produce low resolution assignments. Incorporating prior knowledge of abundance, distribution or movement patterns can ameliorate this limitation, but data are lacking for most species. We demonstrate how observations reported by citizen scientists can be used to develop robust estimates of species distributions and to constrain δD assignments. We developed a Bayesian framework to refine isotopic estimates of migrant animal origins conditional on species distribution models constructed from citizen scientist observations. To illustrate this approach, we analysed the migratory connectivity of the Virginia rail Rallus limicola , a secretive and declining migratory game bird in North America. Citizen science observations enabled both estimation of sampling bias and construction of bias-corrected species distribution models. Conditioning δD assignments on these species distribution models yielded comparably high-resolution assignments. Most Virginia rails wintering across five Gulf Coast sites spent the previous summer near the Great Lakes, although a considerable minority originated from the Chesapeake Bay watershed or Prairie Pothole region of North Dakota. Conversely, the majority of migrating Virginia rails from a site in the Great Lakes most likely spent the previous winter on the Gulf Coast between Texas and Louisiana. Synthesis and applications . In this analysis, Virginia rail migratory connectivity does not fully correspond to the administrative flyways used to manage migratory birds. This example demonstrates that with the increasing availability of citizen science data to create species distribution models, our framework can produce high-resolution estimates of migratory connectivity for many animals, including cryptic species. Empirical evidence of links between seasonal habitats will help enable effective habitat management, hunting quotas and population monitoring and also highlight critical knowledge gaps.

Journal of Applied Ecology↗
USGS2017

Defining and classifying migratory habitats as sources and sinks: The migratory pathway approach

Understanding and conserving migratory species requires a method for characterizing the seasonal flow of animals among habitats. Source-sink theory describes the metapopulation dynamics of species by classifying habitats as population sources (i.e. net contributors) or sinks (i.e. net substractors). Migratory species may have non-breeding habitats important to the species (e.g. overwintering or stopover habitats) that traditional source-sink theory would classify as sinks because these habitats produce no individuals. Conversely, existing migratory network models can evaluate the relative contribution of non-breeding nodes, but these models make an equilibrium assumption that is difficult to meet when examining real migratory populations. We extend a pathway-based metric allowing breeding habitats, non-breeding habitats and migratory pathways connecting these habitats to be classified as sources or sinks. Rather than being based on whether place- or season-specific births exceed deaths, our approach quantifies the total demographic contribution from a node or migratory pathway over a flexibly defined yet limited time period across an organism's life cycle. As such, it provides a snapshot of a migratory system and therefore does not require assumptions associated with equilibrium dynamics. We first develop a generalizable mathematical notation and then demonstrate how the metric may be used with two case studies: the common loon ( Gavia immer ) and Yellowstone cutthroat trout ( Oncorhynchus clarkii bouvieri ). These examples highlight how stressors can impact stopover and wintering habitats (loons) and habitat management targeting migratory pathways can improve population status (trout). Synthesis and applications . Each of the two case studies presented describes how effects at one location are felt by populations in another through the seasonal flow of individuals. The contribution metric we present should be helpful in allocating regulatory and management attention to times and locations most critical to migratory species persistence.

Journal of Applied Ecology↗
USGS2017

Are ranger patrols effective in reducing poaching-related threats within protected areas?

Poaching is one of the greatest threats to wildlife conservation world-wide. However, the spatial and temporal patterns of poaching activities within protected areas, and the effectiveness of ranger patrols and ranger posts in mitigating these threats, are relatively unknown. We used 10 years (2006–2015) of ranger-based monitoring data and dynamic multi-season occupancy models to quantify poaching-related threats, to examine factors influencing the spatio-temporal dynamics of these threats and to test the efficiency of management actions to combat poaching in Nyungwe National Park (NNP), Rwanda. The probability of occurrence of poaching-related threats was highest at lower elevations (1,801–2,200 m), especially in areas that were close to roads and tourist trails; conversely, occurrence probability was lowest at high elevation sites (2,601–3,000 m), and near the park boundary and ranger posts. The number of ranger patrols substantially increased the probability that poaching-related threats disappear at a site if threats were originally present (i.e. probability of extinction of threats). Without ranger visits, the annual probability of extinction of poaching-related threats was an estimated 7%; this probability would increase to 20% and 57% with 20 and 50 ranger visits per year, respectively. Our results suggest that poaching-related threats can be effectively reduced in NNP by adding ranger posts in areas where they do not currently exist, and by increasing the number of patrols to sites where the probability of poaching activities is high. Synthesis and applications . Our application of dynamic occupancy models to predict the probability of presence of poaching-related threats is novel, and explicitly considers imperfect detection of illegal activities. Based on the modelled relationships, we identify areas that are most vulnerable to poaching, and offer insights regarding how ranger patrols can be optimally deployed to reduce poaching-related threats and other illegal activites, while taking into account potential sampling biases. We show that poaching can be effectively reduced by increasing ranger patrols to areas under high risk of poaching activities, and by adding ranger patrols near these sites. These findings are broadly applicable to national parks and protected areas experiencing a high degree of poaching and other illegal activities.

Nyungwe National Park↗
USGS2019

Which trees die during drought? The key role of insect host-tree selection

1. During drought, the tree subpopulations (such as size or vigor classes) that suffer disproportionate mortality can be conceptually arrayed along a continuum defined by the actions of biotic agents, particularly insects. At one extreme, stress dominates: insects are absent or simply kill the most physiologically stressed trees. At the opposite extreme, host selection dominates: outbreaking insects kill trees independently of their stress, instead selecting trees based on size or other traits. Intermediate responses are also possible. Yet for mixed-species forests, we lack a broad understanding of the relative importance of insects in determining exactly which subpopulations of trees suffer disproportionate mortality during drought, and whether these subpopulations differ among co-occurring tree species. 2. During an extreme drought, we documented the roles of native bark beetles in the mortality of five tree species in California’s Sierra Nevada. We analyzed patterns and agents of tree mortality in 12 permanent plots, and patterns of mortality in 89 temporary plots. 3. Most tree mortality was associated with bark beetles. But the growth rates (an indicator of chronic stress) and sizes of trees that suffered greatest bark-beetle-related mortality differed sharply among tree taxa, variously conforming with domination by stress (Abies concolor), domination by host selection (Pinus lambertiana and P. ponderosa), or a mix of the two (Calocedrus decurrens). Quercus kelloggii mortality remained relatively low. Thus, even during extreme drought substantial proportions of stressed trees survived because they were of sizes that mostly avoided fatal insect attack. Conversely, substantial proportions of comparatively unstressed trees died because they were of sizes that were selectively killed by outbreaking insects. 4. Synthesis. Native bark beetles were primarily responsible for determining which subpopulations of trees suffered greatest mortality during drought. However, idiosyncratic host-tree selection by the different bark beetle taxa meant that the tree subpopulations suffering greatest mortality differed strikingly among tree taxa – for example, high mortality of small trees of one species, but of large trees of another. If idiosyncratic host-tree selection by biotic mortality agents proves to be a generally common phenomenon, it could help explain weak broad-scale correlations between tree traits and tree mortality during drought.

Journal of Ecology↗
USGS2021

More than one way to kill a spruce forest: The role of fire and climate in the late-glacial termination of spruce woodlands across the southern Great Lakes

In the southern Great Lakes Region, North America, between 19,000 and 8,000 years ago, temperatures rose by 2.5–6.5°C and spruce Picea forests/woodlands were replaced by mixed-deciduous or pine Pinus forests. The demise of Picea forests/woodlands during the last deglaciation offers a model system for studying how changing climate and disturbance regimes interact to trigger declines of dominant species and vegetation-type conversions. The role of rising temperatures in driving the regional demise of Picea forests/woodlands is widely accepted, but the role of fire is poorly understood. We studied the effect of changing fire activity on Picea declines and rates of vegetation composition change using fossil pollen and macroscopic charcoal from five high-resolution lake sediment records. The decline of Picea forests/woodlands followed two distinct patterns. At two sites (Stotzel-Leis and Silver Lake), fire activity reached maximum levels during the declines and both charcoal accumulation rates and fire frequency were significantly and positively associated with vegetation composition change rates. At these sites, Picea declined to low levels by 14 kyr BP and was largely replaced by deciduous hardwood taxa like ash Fraxinus , hop-hornbeam/hornbeam Ostrya/Carpinus and elm Ulmus . However, this ecosystem transition was reversible, as Picea re-established at lower abundances during the Younger Dryas. At the other three sites, there was no statistical relationship between charcoal accumulation and vegetation composition change rates, though fire frequency was a significant predictor of rates of vegetation change at Appleman Lake and Triangle Lake Bog. At these sites, Picea declined gradually over several thousand years, was replaced by deciduous hardwoods and high levels of Pinus and did not re-establish during the Younger Dryas. Synthesis . Fire does not appear to have been necessary for the climate-driven loss of Picea woodlands during the last deglaciation, but increased fire frequency accelerated the decline of Picea in some areas by clearing the way for thermophilous deciduous hardwood taxa. Hence, warming and intensified fire regimes likely interacted in the past to cause abrupt losses of coniferous forests and could again in the coming decades.

Indiana, Michigan, Ohio↗
USGS2023

The Chesapeake Bay Land Change Model (CBLCM): Simulating future land use scenarios and potential impacts on water quality

The Chesapeake Bay Land Change Model (CBLCM) is an open-source pseudo-cellular automata land change model tailored for loose coupling with watershed models. The CBLCM simulates infill development, residential and commercial development, natural land and agricultural land conversion, and growth served by sewer or septic wastewater treatment. The CBLCM is unique among land change models by simulating multiple types of development and explicitly accounting for infill development and the spatial patterns of development densities. The CBLCM was used to simulate five future land use scenarios, holding population constant, for all counties within and adjacent to the Chesapeake Bay watershed from 2013 to 2055. Results are presented here for the state of Maryland over the period 2013–2025 to illustrate model functionality and validation. The growth management (GM) scenario achieved the least development and potential impacts to natural and agricultural lands while accommodating the same amount of population growth as the other four scenarios. Scenarios focusing exclusively on natural or agricultural land protection shifted development to unprotected areas resulting in unforeseen water quality consequences. Simultaneously achieving more compact development while protecting the most valued natural and agricultural lands requires a combination of GM and land conservation policies and actions.

Maryland↗
USGS2014

Using mark-recapture distance sampling methods on line transect surveys

Mark–recapture distance sampling (MRDS) methods are widely used for density and abundance estimation when the conventional DS assumption of certain detection at distance zero fails, as they allow detection at distance zero to be estimated and incorporated into the overall probability of detection to better estimate density and abundance. However, incorporating MR data in DS models raises survey and analysis issues not present in conventional DS. Conversely, incorporating DS assumptions in MR models raises issues not present in conventional MR. As a result, being familiar with either conventional DS methods or conventional MR methods does not on its own put practitioners in good a position to apply MRDS methods appropriately. This study explains the sometimes subtly different varieties of MRDS survey methods and the associated concepts underlying MRDS models. This is done as far as possible without giving mathematical details – in the hope that this will make the key concepts underlying the methods accessible to a wider audience than if we were to present the concepts via equations. We illustrate use of the two main types of MRDS model by using data collected on two different types of survey: a survey of ungulate faecal pellets where two observers searched independently of each other; and a cetacean survey that used a search protocol that could accommodate responsive movement, with only one observer searching independently and the other being aware of all detections. Synthesis and applications . Mark–recapture DS is a widely used method for estimating animal density and abundance when detection of animals at distance zero is not certain. Two observer configurations and three statistical models are described, and it is important to choose the most appropriate model for the observer configuration and target species in question. By way of making the methods more accessible to practicing ecologists, we describe the key ideas underlying MRDS methods, the sometimes subtle differences between them, and we illustrate these by applying different kinds of MRDS method to surveys of two different target species using different survey configurations.

Methods in Ecology and Evolution↗
USGS2017

Statistical design and analysis for plant cover studies with multiple sources of observation errors

Effective wildlife habitat management and conservation requires understanding the factors influencing distribution and abundance of plant species. Field studies, however, have documented observation errors in visually estimated plant cover including measurements which differ from the true value (measurement error) and not observing a species that is present within a plot (detection error). Unlike the rapid expansion of occupancy and N-mixture models for analysing wildlife surveys, development of statistical models accounting for observation error in plants has not progressed quickly. Our work informs development of a monitoring protocol for managed wetlands within the National Wildlife Refuge System. Zero-augmented beta (ZAB) regression is the most suitable method for analysing areal plant cover recorded as a continuous proportion but assumes no observation errors. We present a model extension that explicitly includes the observation process thereby accounting for both measurement and detection errors. Using simulations, we compare our approach to a ZAB regression that ignores observation errors (naïve model) and an “ad hoc” approach using a composite of multiple observations per plot within the naïve model. We explore how sample size and within-season revisit design affect the ability to detect a change in mean plant cover between 2 years using our model. Explicitly modelling the observation process within our framework produced unbiased estimates and nominal coverage of model parameters. The naïve and “ad hoc” approaches resulted in underestimation of occurrence and overestimation of mean cover. The degree of bias was primarily driven by imperfect detection and its relationship with cover within a plot. Conversely, measurement error had minimal impacts on inferences. We found >30 plots with at least three within-season revisits achieved reasonable posterior probabilities for assessing change in mean plant cover. For rapid adoption and application, code for Bayesian estimation of our single-species ZAB with errors model is included. Practitioners utilizing our R-based simulation code can explore trade-offs among different survey efforts and parameter values, as we did, but tuned to their own investigation. Less abundant plant species of high ecological interest may warrant the additional cost of gathering multiple independent observations in order to guard against erroneous conclusions.

Methods in Ecology and Evolution↗
USGS2025

Trends in richness and occupancy of Ugandan birds and relation to local tree cover

Changes in vegetation cover are occurring across sub-Saharan Africa and can have substantial effects on ecological communities, but limited data make understanding status and trends difficult for many taxa. We surveyed birds for several decades across Uganda using point counts. Using time-to-detection analysis in a trait-informed Bayesian multi-species occupancy framework, we model bird species richness as a function of year and local tree cover across 28 sites. We test for trends in richness and occupancy, and for the relationship between these and local and landscape-scale tree cover. Species richness increased at 75% of sites through the study period, and generalist bird species were most likely to be increasing in occupancy. Forest specialist bird species, and to a lesser extent generalists, responded positively to tree cover. Woody cover is changing across Uganda, with declines most pronounced in areas with the highest tree cover. This is likely to be causing declines in forest specialist species while favouring generalists. When tree cover decline is caused by conversion to croplands, rather than transitions to grasslands, grassland specialists are unlikely to benefit. Effects of climate and land use change and population pressure are likely to continue to alter woody plant cover and thus affect East African bird communities.

African Journal of Ecology↗