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Metabarcoding analysis of arthropod pollinator diversity: A methodological comparison of eDNA derived from flowers and DNA derived from bulk samples of insects

Limitations of traditional insect sampling methods have motivated the development and optimisation of new non-lethal methods capable of quantifying diverse arthropod communities. Environmental DNA (eDNA) metabarcoding using arthropod-specific primers has recently been investigated as a novel way to characterise arthropod communities from the DNA they deposit on the surface of plants. This sampling method has had demonstrated success, but pollinators—especially bees—are oddly underrepresented in these studies. To evaluate this inconsistency, we investigated the limitations of eDNA metabarcoding for bees and other pollinators. We compared pollinator diversity derived from eDNA extracted from flowers and DNA extracted from pulverised bulk samples of insects collected from vane traps deployed at the same sites using three metabarcoding primers, two of which target arthropods generally (COI-Jusino and 16S-Marquina) and one that targets bumblebees ( Bombus spp., COI-Milam). Across methods, we detected 77 insect families from 9 orders. The COI-Jusino marker amplified the highest taxonomic diversity compared to 16S-Marquina and COI-Milam. More amplicon sequence variants (ASVs) were recovered from vane traps (blue: 1357, yellow: 1542) than flowers (245), but only 23% of families and 13% of genera were shared among methods, indicating that flowers and blue and yellow vane traps may each sample different parts of the available arthropod community. Of 29 flower samples with known bee visitations, only 10 samples had bee detections from eDNA, and incomplete reference databases hindered assignment to species. Although our study provides additional evidence for the usefulness of eDNA metabarcoding for characterising arthropod communities, significant challenges remain when using eDNA metabarcoding methods to identify and quantify pollinator communities, especially bees.

Molecular Ecology↗

Small mammal responses to wetland restoration in the Greater Everglades ecosystem

Wetlands have experienced dramatic losses in extent around the world, disrupting ecosystem function, habitat, and biodiversity. In Florida’s Greater Everglades, a massive restoration effort costing billions of dollars and spanning multiple decades is underway. As Everglades restoration is implemented in incremental projects, scientists and planners monitor the outcomes of projects. In this study, we evaluated the progress of a restoration project in the southwestern Everglades. We aimed to determine whether the presence and density of small mammals differed between areas with hydrologic restoration of the ecosystem and areas without restoration. Our three focal species were: marsh rice rat ( Oryzomys palustris ), hispid cotton rat ( Sigmodon hispidus ), and cotton mouse ( Peromyscus gossypinus ). Using spatially explicit capture‐recapture models, we found greater densities of cotton mouse in restored habitat and lower densities of hispid cotton rat in sites with higher water levels. Additionally, we found an increase in the presence of the marsh rice rat in restored areas compared to unrestored, but captures were too low to reliably assess significance. Our study provides evidence that ongoing restoration in the southwestern Everglades is already impacting the small mammal community.

Florida↗

Nonnative Fishes in the Upper Mississippi River System

The introduction, spread, and establishment of nonnative species is widely regarded as a leading threat to aquatic biodiversity and consequently is ranked among the most serious environmental problems facing the United States today. This report presents information on nonnative fish species observed by the Long Term Resource Monitoring Program on the Upper Mississippi River System a nexus of North American freshwater fish diversity for the Nation. The Long Term Resource Monitoring Program, as part of the U.S. Army Corps of Engineers' Environmental Management Plan, is the Nation's largest river monitoring program and stands as the primary source of standardized ecological information on the Upper Mississippi River System. The Long Term Resource Monitoring Program has been monitoring fish communities in six study areas on the Upper Mississippi River System since 1989. During this period, more than 3.5 million individual fish, consisting of 139 species, have been collected. Although fish monitoring activities of the Long Term Resource Monitoring Program focus principally on entire fish communities, data collected by the Program are useful for detecting and monitoring the establishment and spread of nonnative fish species within the Upper Mississippi River System Basin. Sixteen taxa of nonnative fishes, or hybrids thereof, have been observed by the Long Term Resource Monitoring Program since 1989, and several species are presently expanding their distribution and increasing in abundance. For example, in one of the six study areas monitored by the Long Term Resource Monitoring Program, the number of established nonnative species has increased from two to eight species in less than 10 years. Furthermore, contributions of those eight species can account for up to 60 percent of the total annual catch and greater than 80 percent of the observed biomass. These observations are critical because the Upper Mississippi River System stands as a nationally significant pathway for nonnative species expansion between the Mississippi River and the Great Lakes Basin. This report presents a synthesis of data on nonnative fish species observed during Long Term Resource Monitoring Program monitoring activities.

Scientific Investigations Report↗

Reviews and syntheses: Effects of permafrost thaw on Arctic aquatic ecosystems

The Arctic is a water-rich region, with freshwater systems covering about 16 % of the northern permafrost landscape. Permafrost thaw creates new freshwater ecosystems, while at the same time modifying the existing lakes, streams, and rivers that are impacted by thaw. Here, we describe the current state of knowledge regarding how permafrost thaw affects lentic (still) and lotic (moving) systems, exploring the effects of both thermokarst (thawing and collapse of ice-rich permafrost) and deepening of the active layer (the surface soil layer that thaws and refreezes each year). Within thermokarst, we further differentiate between the effects of thermokarst in lowland areas vs. that on hillslopes. For almost all of the processes that we explore, the effects of thaw vary regionally, and between lake and stream systems. Much of this regional variation is caused by differences in ground ice content, topography, soil type, and permafrost coverage. Together, these modifying factors determine (i) the degree to which permafrost thaw manifests as thermokarst, (ii) whether thermokarst leads to slumping or the formation of thermokarst lakes, and (iii) the manner in which constituent delivery to freshwater systems is altered by thaw. Differences in thaw-enabled constituent delivery can be considerable, with these modifying factors determining, for example, the balance between delivery of particulate vs. dissolved constituents, and inorganic vs. organic materials. Changes in the composition of thaw-impacted waters, coupled with changes in lake morphology, can strongly affect the physical and optical properties of thermokarst lakes. The ecology of thaw-impacted lakes and streams is also likely to change; these systems have unique microbiological communities, and show differences in respiration, primary production, and food web structure that are largely driven by differences in sediment, dissolved organic matter, and nutrient delivery. The degree to which thaw enables the delivery of dissolved vs. particulate organic matter, coupled with the composition of that organic matter and the morphology and stratification characteristics of recipient systems will play an important role in determining the balance between the release of organic matter as greenhouse gases (CO 2 and CH 4 ), its burial in sediments, and its loss downstream. The magnitude of thaw impacts on northern aquatic ecosystems is increasing, as is the prevalence of thaw-impacted lakes and streams. There is therefore an urgent need to quantify how permafrost thaw is affecting aquatic ecosystems across diverse Arctic landscapes, and the implications of this change for further climate warming.

Biogeosciences↗

Relationship of Eastern hemlock ( Tsuga canadensis ) to the ecology of small streams in Delaware Water Gap National Recreation Area

Hemlock ravines in Delaware Water Gap National Recreation Area (DEWA) are highly valued because of their distinctive aesthetic, recreational and ecological qualities. We conducted a comparative study designed to determine the potential long-term consequences to aquatic communities of the suspected transition from hemlock-dominated forests to mixed hardwood forests as a result of hemlock woolly adelgid (HWA; Adelges tsugae) induced mortality. A landscape analysis of DEWA using Geographic Information Systems (GIs) was used to select 14 hemlock and hardwood site-pairs that were similar in topography (i.e., slope, terrain shape, aspect, light levels) and stream size (first or second order) but differed in forest composition. This paired watershed approach provided a powerful means to discern the influence of hemlock forests on stream communities. This study was designed to provide an aquatic perspective on potential losses of biological diversity should hemlock forests die.

New Jersey;Pennsylvania↗

Ecology of Lake Erie - Chemistry, plankton & planktivory: A synthesis

As with other large lake ecosystems worldwide, Lake Erie can be considered a moving target for management, owing to physicochemical and biological changes brought on by anthropogenic change, both planned (e.g. nutrient and fisheries management) and unplanned (e.g. climate change, invasive species, modified land-use activities). These changes have challenged efforts to conserve biodiversity, sustain exploitable resources, and maintain the integrity of services valued by society both within the Lake Erie basin and (Fraker et al., 2022; Fussell et al., 2016; Sinclair et al., 2021; Sinclair et al., 2023) and outside of it (Allan et al., 2013; Jenny et al., 2020; Sterner et al., 2017). Some of these changes and their ramifications for management were documented in the first of four AEHM special issues devoted to the Lake Erie ecosystem (the fourth issue of 2023, volume 26, issue 4; see overview by Ludsin et al., 2023). That special issue focused explicitly on nutrient inputs and availability in Lake Erie and the lower food web, including planktonic and benthic microbial (including cyanobacteria), algal, and invasive dreissenid mussel communities. Similar to the previous Lake Erie special issue, this second one has focused on documenting the state of the lake, providing ecological understanding that could potentially benefit management. While some overlap in topics exists between issues, the studies conducted herein were completely independent of those previous investigations and offer unique insights. Specifically, the contributions to this current issue center on: 1) dynamics of water chemistry in Lake Erie’s central basin (i.e. bottom hypoxia; Ackerman et al., 2024) and western basin (i.e. mercury; Starr et al., 2024); 2) changes in primary producer biomass (Lesht et al., 2024), cyanotoxins (i.e. microcystin; Zastepa et al., 2024), and water quality (e.g. water clarity and dissolved nutrients; Howell et al., 2024); and 3) larval fish foraging (i.e. Lake Whitefish; Coregonus clupeaformis; Amidon et al., 2024) and community structure and phenology (DeBruyne et al., 2024). Below we summarize the major findings of these papers and offer a synthetic perspective on the value of this research for understanding the state of Lake Erie and enhancing management.

Aquatic Ecosystem Health and Management↗

Impounded sediment and dam removal: Erosion rates and proximal downstream fate

Sediment management is an important aspect of dam removal projects, often driving costs and influencing community acceptance. For dams storing uncontaminated sediments, downstream release is often the cheapest and most practical approach and can be ecologically beneficial to downstream areas deprived of sediment for years. To employ this option, project proponents must estimate the sediment quantity to be released and, if substantial, estimate how long it will take to erode, where it will go and how long it will stay there. We investigated these issues when the Bloede Dam was removed from the Patapsco River in Maryland, USA, in 2018. The dam was about 10 m high, and its impoundment was nearly filled with an estimated 186 600 m 3 of sediment composed of 70% sand and 30% mud. After removal, using elevation surveys generated by traditional methods as well as structure-from-motion (SfM) photogrammetry at high temporal resolution, we documented rapid erosion of stored sediments in the first 6 months (~60%) followed by greatly reduced erosion rates for the next two and a half years. A stable channel developed in the impoundment during the rapid erosion phase. These results were predicted by a two-phased erosion response model developed from observations at sand-filled impoundments, thus expanding its applicability to include impoundments with a sand-over-mud stratigraphy. A similar two-phase erosion response has been reported for sediment releases at other dam removals in the United States, France and Japan across a range of dam and watershed scales, indicating what practitioners and communities should expect in similar settings. Downstream, repeat surveys combined with discharge and sediment gaging showed rapid transport of eroded sediments through a 5-km reach, especially during the first year when discharges were above normal, and little overbank storage.

Maryland↗

Co-mast: Harmonized seed production data for woody plants across US long-term research sites

Plants display a range of temporal patterns of inter-annual reproduction, from relatively constant seed production to “mast seeding,” the synchronized and highly variable interannual seed production of plants within a population. Previous efforts have compiled global records of seed production in long-lived plants to gain insight into seed production, forest and animal population dynamics, and the effects of global change on masting. Existing datasets focus on seed production dynamics at the population scale but are limited in their ability to examine community-level mast seeding dynamics across different plant species at the continental scale. We harmonized decades of plant reproduction data for 141 woody plant species across nine Long-Term Ecological Research (LTER) or long-term ecological monitoring sites from a wide range of habitats across the United States. Plant reproduction data are reported annually between 1957 and 2021 and based on either seed traps or seed and/or cone counts on individual trees. A wide range of woody plant species including trees, shrubs, and lianas are represented within sites allowing for direct community-level comparisons among species. We share code for filtering of data that enables the comparison of plot and individual tree data across sites. For each species, we compiled relevant life history attributes (e.g., seed mass, dispersal syndrome, seed longevity, sexual system) that may serve as important predictors of mast seeding in future analyses. To aid in phylogenetically informed analyses, we also share a phylogeny and phylogenetic distance matrix for all species in the dataset. These data can be used to investigate continent-scale ecological properties of seed production, including individual and population variability, synchrony within and across species, and how these properties of seed production vary in relation to plant species traits and environmental conditions. In addition, these data can be used to assess how annual variability in seed production is associated with climate conditions and how that varies across populations, species, and regions. The dataset is released under a CC0 1.0 Universal public domain license.

Ecology↗

Elk Monitoring Protocol for Lewis and Clark National Historical Park, Version 1.0

Maintaining elk (Cervus elaphus roosevelti) herds that frequent Lewis and Clark National Historical Park (NHP) is central to the park’s purpose of preserving the historic, cultural, scenic, and natural resources. Elk were critical to sustaining the members of the Lewis and Clark expedition by providing food and clothing over the winter of 1805-1806. Today, elk viewing opportunities in the park and surrounding region generate broad appeal with the visiting public, which number over 250,000 per year at the Fort Clatsop visitor center. This protocol describes procedures for monitoring trends in the use of the Fort Clatsop area by Roosevelt elk. Specific objectives of elk monitoring in Lewis and Clark NHP are to measure the relative use and proportion of area used by elk during winter in the Fort Clatsop Unit of the park, and the rate at which elk are sighted from roads in and around the park. Relative use and the proportion of area used by elk are determined from elk fecal pellet surveys conducted every other year in the Fort Clatsop park unit. Pairs of observers visit a systematic array of permanent plots in the fall to clear them of elk fecal pellets, and return to the plots in late winter to count elk fecal pellets that have accumulated during winter. Half of the subplots are counted by two independent observers, which allows for the estimation of relative use and proportion of area occupied by elk with analyses of detection biases that account for unseen elk pellet groups. Standardized road surveys are conducted in and near the Fort Clatsop park unit three or four times monthly during alternate months. Data from road surveys are used to quantify the rate that park visitors would be expected to see elk, when driving the selected set of routes. The monitoring protocol is based on three field seasons of development and testing. The protocol narrative describes the background, rationale, sampling design, field methods, analytical methods, data management, reporting, personnel requirements, and operational requirements for elk monitoring in Lewis and Clark NHP. The sampling design reflects tradeoffs between statistical and ecological considerations, safety, and current budget considerations. The protocol provides adequate power to detect a doubling or halving of elk use in the Fort Clatsop unit and surrounding areas within 15 years. Step-by-step guidance for planning and completing the monitoring tasks are in the attached standard operating procedures (SOPs). Information on the status and trends of elk use in Lewis and Clark NHP will allow park managers to assess the effects on elk of restoration programs within the park, build community partnerships, and identify potential linkages between regional land use changes and elk use of the Park. Lewis and Clark NHP has an active ecological restoration program that aims to recreate, where possible, ecological conditions that Lewis and Clark encountered. The restoration program includes an extensive exotic plant removal program, wetland restoration, and silvicultural treatments that will hasten development of late-seral conditions in recently acquired forest lands of the Fort Clatsop park unit. In the future, monitoring results can be used to test for spatial associations between ecological restoration treatments and relative use by elk. The park also plans to feature results from elk monitoring prominently in its educational outreach activities to help interpret the historical and current ecological context of the Lewis and Clark story, and engender public support for the park mission and management activities. Although NPS does not manage non-park lands, information about trends in the distribution of elk use will be valuable in public outreach and discussions with other partnering agencies and regional private landowners.

Natural Resource Report↗

Identifying western yellow-billed cuckoo breeding habitat with a dual modelling approach

The western population of the yellow-billed cuckoo ( Coccyzus americanus ) was recently listed as threatened under the federal Endangered Species Act. Yellow-billed cuckoo conservation efforts require the identification of features and area requirements associated with high quality, riparian forest habitat at spatial scales that range from nest microhabitat to landscape, as well as lower-suitability areas that can be enhanced or restored. Spatially explicit models inform conservation efforts by increasing ecological understanding of a target species, especially at landscape scales. Previous yellow-billed cuckoo modelling efforts derived plant-community maps from aerial photography, an expensive and oftentimes inconsistent approach. Satellite models can remotely map vegetation features (e.g., vegetation density, heterogeneity in vegetation density or structure) across large areas with near perfect repeatability, but they usually cannot identify plant communities. We used aerial photos and satellite imagery, and a hierarchical spatial scale approach, to identify yellow-billed cuckoo breeding habitat along the Lower Colorado River and its tributaries. Aerial-photo and satellite models identified several key features associated with yellow-billed cuckoo breeding locations: (1) a 4.5 ha core area of dense cottonwood-willow vegetation, (2) a large native, heterogeneously dense forest (72 ha) around the core area, and (3) moderately rough topography. The odds of yellow-billed cuckoo occurrence decreased rapidly as the amount of tamarisk cover increased or when cottonwood-willow vegetation was limited. We achieved model accuracies of 75–80% in the project area the following year after updating the imagery and location data. The two model types had very similar probability maps, largely predicting the same areas as high quality habitat. While each model provided unique information, a dual-modelling approach provided a more complete picture of yellow-billed cuckoo habitat requirements and will be useful for management and conservation activities.

Ecological Modelling↗

Vascular Plant and Vertebrate Inventory of Saguaro National Park, Tucson Mountain District

This report summarizes the results of the first comprehensive inventory of plants and vertebrates at the Tucson Mountain District (TMD) of Saguaro National Park, Arizona. From 2001 to 2003 we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at the district to document the presence of species within its boundaries. Park staff also carried out extensive infrared-triggered camera work for medium and large mammals from 2002-2005 and results from that effort are reported here. Our spatial sampling design for all taxa employed a combination of random and nonrandom survey sites. Survey effort was greatest for medium and large mammals and herpetofauna. Because we used repeatable study designs and standardized field methods, these inventories can serve as the first step in a biological monitoring program for the district. We also provide an overview of previous survey efforts in the district. We use data from our inventory and other surveys to compile species lists and to assess inventory completeness. The survey effort for herpetofauna, birds, and medium and large mammals was the most comprehensive ever undertaken in the district. We recorded a total of 320 plant and vertebrate species, including 21 species not previously found in the district (Table 1). Based on a review of our inventory and past research at the district, there have been a total of 723 species of plants and vertebrates found there. We believe inventories for most taxonomic groups are nearly complete. Based on our surveys, we believe the native plant and vertebrate community compositions of the district are relatively intact, though some species loss has occurred and threats are increasing, particularly to herpetofauna and larger mammals. Of particular note is the relatively small number of non-native species and their low abundance in the district, which is in contrast to many nearby natural areas. Rapidly expanding development on the west, north, and east sides of the district is cause for concern that the park continue its commitment to environmental restoration, which is largely responsible for reducing the threats posed by non-native plants. With continued maintenance of natural processes and the ecological structure of the park's biodiversity, the park will become an increasingly important place to both the general public and the scientific community. This report supersedes results reported in Powell et al. (2002, 2003).

Open-File Report↗

Tools for quantifying isotopic niche space and dietary variation at the individual and population level.

Ecologists are increasingly using stable isotope analysis to inform questions about variation in resource and habitat use from the individual to community level. In this study we investigate data sets from 2 California sea otter ( Enhydra lutris nereis ) populations to illustrate the advantages and potential pitfalls of applying various statistical and quantitative approaches to isotopic data. We have subdivided these tools, or metrics, into 3 categories: IsoSpace metrics, stable isotope mixing models, and DietSpace metrics. IsoSpace metrics are used to quantify the spatial attributes of isotopic data that are typically presented in bivariate (e.g., δ 13 C versus δ 15 N) 2-dimensional space. We review IsoSpace metrics currently in use and present a technique by which uncertainty can be included to calculate the convex hull area of consumers or prey, or both. We then apply a Bayesian-based mixing model to quantify the proportion of potential dietary sources to the diet of each sea otter population and compare this to observational foraging data. Finally, we assess individual dietary specialization by comparing a previously published technique, variance components analysis, to 2 novel DietSpace metrics that are based on mixing model output. As the use of stable isotope analysis in ecology continues to grow, the field will need a set of quantitative tools for assessing isotopic variance at the individual to community level. Along with recent advances in Bayesian-based mixing models, we hope that the IsoSpace and DietSpace metrics described here will provide another set of interpretive tools for ecologists.

Journal of Mammalogy↗

Legacy and current‐use contaminants in sediments alter macroinvertebrate communities in southeastern US Streams

Sediment contamination of freshwater streams in urban areas is a recognized and growing concern. As a part of a comprehensive regional stream‐quality assessment, stream‐bed sediment was sampled from streams spanning a gradient of urban intensity in the Piedmont ecoregion of the southeastern United States. We evaluated relations between a broad suite of sediment contaminants (metals, current‐use pesticides, organochlorine pesticides, polychlorinated biphenyls, brominated diphenyl ethers, and polycyclic aromatic hydrocarbons), ambient sediment toxicity, and macroinvertebrate communities from 76 sites. Sediment toxicity was evaluated by conducting whole‐sediment laboratory toxicity testing with the amphipod Hyalella azteca (for 28 d) and the midge Chironomus dilutus (for 10 d). Approximately one‐third of the sediment samples were identified as toxic for at least one test species endpoint, although concentrations of contaminants infrequently exceeded toxicity benchmarks. Ratios of contaminant concentrations relative to their benchmarks, both individually and as summed benchmark quotients, were explored on a carbon‐normalized and a dry‐weight basis. Invertebrate taxa measures from ecological surveys tended to decline with increasing urbanization and with sediment contamination. Toxicity test endpoints were more strongly related to sediment contamination than invertebrate community measures were. Sediment chemistry and sediment toxicity provided moderate and weak, respectively, explanatory power for the similarity/dissimilarity of invertebrate communities. The results indicate that current single‐chemical sediment benchmarks may underestimate the effects from mixtures of sediment contaminants experienced by lotic invertebrates.

Alabama, Georgia, South Carolina, North Carolina, ↗

Water and the South Florida environment

Ecological problems are a major concern to Florida as well as to the Nation. National attention was focused on these problems in September 1968, when the Port Authority of Dade County began to con- struct a jetport for supersonic aircraft on a 39-square-mile tract 6 miles north of Everglades National Park and on the east edge of the Big Cypress Swamp. Conservation groups and citizens raised questions as to the effects of a regional jetport and the attendant satellite growth on the water resources and biological communities of the National Park. The Department of the Interior began studies to investigate the situation. One study, Leopold (1969), reported on the unfavorable ecological effects of the attendant satellite growth. Then Secretary of the Interior, Walter J. Hickel, directed the U.S. Geological Survey to study the water resources of the Big Cypress to determine which parts of the Big Cypress contribute the major part of the water necessary to maintain adequate water supplies for Everglades National Park. This was done in a report by Klein and others (1970). At about the same time, the Departments of interior and Transportation, the State of Florida, and the Dade County Port Authority con-curred in assigning to the Secretary of the Interior certain responsibilities for planning, developing, and coordinating an ecological study of south Florida. A primary objective of the ecological study is to provide information that will assist in the formulation of land-use policy consistent with the protection of the environment of Everglades National Park, the adjacent estuaries, and the public water supplies. The part of the investigation describing the surface-water and ground-water resources of south Florida was assigned to the Geological Survey. The quantity and quality of surface water and ground water and their interrelation with estuarine and marine waters are here considered. Also considered are the problems, present or future, related to the hydrologic environment that involve human, animal, and plant life. Changes taking place, apparent trends, and projections for the future are also considered, as well as alternatives for water management. The Geological Survey effort began in January 1971, when aerial photography and selected qualitative hydrologic data were obtained. However, most of the information upon which this report Is based was obtained by the Geological Survey in cooperative programs with several local, State, and Federal agencies since about 1940. The long-term support of the U.S. Army Corps of Engineers, the National Park Service, U.S. Navy, Florida Department of Natural Resources, Central and Southern Florida Flood Control District, Dade, Broward, Palm Beach and Collier Counties, Miami and Miami Beach, Ft. Lauderdale, Naples and others in the collection of data is gratefully acknowledged. A prolonged drought throughout south Florida from September 1970 to May 1971 accentuated the importance and timeliness of the study. The drought brought about a readvance of sea-water intrusion in many coastal areas, which necessitated restrictions on water use. The effect of drought on the regional water supply, continued population growth and increased water demands, and deterioration of the water quality in many of the canals and waterways of the urban areas accentuated the need for improved water management and land-use planning. As a result of the water crisis, the Governor of Florida called a special conference in September 1971. The conference, attended by foremost scientific and government personnel, proposed creation of an agency that would develop and implement comprehensive land and water-use plans for south Florida that would minimize environmental degradation.

Florida↗

Interaction strength and harvest intensity mediate predator–prey dynamics on coral reefs

Understanding predator–prey relationships is fundamental to our knowledge of the stability and resilience of ecological systems. These dynamics are shaped by both ecological factors, like interaction strength, and anthropogenic factors, like harvest intensity, which can have large-scale implications for community structure. However, few studies have focused on the combined impact of these effects and their contribution to phenomena like prey release within two-species frameworks. In this study, we investigate the interactive impact of interaction strength and harvest pressure on two trophic levels in a predator–prey system using a mathematical modeling approach. Our results reveal that interaction strength plays a crucial role in shaping population dynamics, with high interaction strength leading to a predator-dominated system and low interaction strength enabling coexistence between species. The addition of predator harvest into the system reveals complex and counterintuitive behavior not seen in unharvested systems, likely due to the destabilizing impacts of harvest at some interaction strengths. Specifically, the inclusion of harvest on the predator can induce a range of behaviors, such as prey release and predator decline, that alter the equilibrium abundance of both predator and prey populations. Interestingly, predator–prey systems with intermediate to high interaction strengths achieve maximum total abundance with low harvest levels rather than in scenarios with no harvest pressure, as prey populations benefit greatly from reduced predation mortality associated with predator harvest. We gain insights into the complex interplay between predator–prey interactions and human activities in shaping community composition and abundances across trophic levels. This study provides potential mechanisms that may explain the observed variation in numerical prey release in trophically complex systems in which predators and prey are both extracted, like coral reef fisheries. Results highlight the need for resource management to consider the wide range of factors that shape ecosystem dynamics to develop effective strategies that safeguard the long-term health of complex ecosystems and the human communities that they support.

Ecosphere↗

The influence of global climate change on the scientific foundations and applications of Environmental Toxicology and Chemistry: Introduction to a SETAC international workshop

This is the first of seven papers resulting from a Society of Environmental Toxicology and Chemistry (SETAC) international workshop titled “The Influence of Global Climate Change on the Scientific Foundations and Applications of Environmental Toxicology and Chemistry.” The workshop involved 36 scientists from 11 countries and was designed to answer the following question: How will global climate change influence the environmental impacts of chemicals and other stressors and the way we assess and manage them in the environment? While more detail is found in the complete series of articles, some key consensus points are as follows: (1) human actions (including mitigation of and adaptation to impacts of global climate change [GCC]) may have as much influence on the fate and distribution of chemical contaminants as does GCC, and modeled predictions should be interpreted cautiously; (2) climate change can affect the toxicity of chemicals, but chemicals can also affect how organisms acclimate to climate change; (3) effects of GCC may be slow, variable, and difficult to detect, though some populations and communities of high vulnerability may exhibit responses sooner and more dramatically than others; (4) future approaches to human and ecological risk assessments will need to incorporate multiple stressors and cumulative risks considering the wide spectrum of potential impacts stemming from GCC; and (5) baseline/reference conditions for estimating resource injury and restoration/rehabilitation will continually shift due to GCC and represent significant challenges to practitioners.

Environmental Toxicology and Chemistry↗

Range-wide salamander densities reveal a key component of terrestrial vertebrate biomass in eastern North American forests

Characterizing the population density of species is a central interest in ecology. Eastern North America is the global hotspot for biodiversity of plethodontid salamanders, an inconspicuous component of terrestrial vertebrate communities, and among the most widespread is the eastern red-backed salamander, Plethodon cinereus . Previous work suggests population densities are high with significant geographic variation, but comparisons among locations are challenged by lack of standardization of methods and failure to accommodate imperfect detection. We present results from a large-scale research network that accounts for detection uncertainty using systematic survey protocols and robust statistical models. We analysed mark–recapture data from 18 study areas across much of the species range. Estimated salamander densities ranged from 1950 to 34 300 salamanders ha −1 , with a median of 9965 salamanders ha −1 . We compared these results to previous estimates for P. cinereus and other abundant terrestrial vertebrates. We demonstrate that overall the biomass of P. cinereus , a secondary consumer, is of similar or greater magnitude to widespread primary consumers such as white-tailed deer ( Odocoileus virginianus ) and Peromyscus mice, and two to three orders of magnitude greater than common secondary consumer species. Our results add empirical evidence that P. cinereus , and amphibians in general, are an outsized component of terrestrial vertebrate communities in temperate ecosystems.

Biology Letters↗

Use of risk assessment to evaluate effects and plan remediation of abandoned mines

A framework of risk assessment is elaborated for the evaluation of the effects of abandoned mines and mills. Steps in this process include environmental description, identification and characterization of sources, assessment of exposure, assessment of effects, risk characterization, and risk management of remediation. The development and use of ecological end-points for remediation is discussed in terms of the chemical constituents, toxicity tests and the biological community.

Conference Paper↗