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USGS2022

A web-based tool for assessing the condition of benthic diatom assemblages in streams and rivers of the conterminous United States

Benthic diatom assemblages are known to be indicative of water quality but have yet to be widely adopted in biological assessments in the United States due to several limitations. Our goal was to address some of these limitations by developing regional multi-metric indices (MMIs) that are robust to inter-laboratory taxonomic inconsistency, adjusted for natural covariates, and sensitive to a wide range of anthropogenic stressors. We aggregated bioassessment data from two national-scale federal programs and used a data-driven analysis in which all-possible combinations of 2–7 metrics were compared for three measures of performance. After ranking the best-performing MMIs, we selected the final MMIs by evaluating stress-response relations in independent regional datasets of diatom samples paired with measures of several water-quality stressors, including herbicides and streamflow flashiness. Each regional MMI performed well at calibration sites and represented diverse aspects of the structure and function of diatom communities. Most metrics included in the best MMIs were modeled to account for natural variation including climate, topography, soil characteristics, lithology, and groundwater influence on streamflow. MMI performance improved with higher numbers of component metrics, but this effect diminished beyond six metrics. Component metrics of MMIs were associated with a broad suite of measured stressors in every region, including salinity, nutrients, herbicides, and streamflow flashiness. We provide a web-based software application that allows users in the conterminous United States to apply our MMIs to their own datasets and compare MMI scores from their sites to a broader regional context.

Ecological Indicators↗

USGS2012

Potentially bioavailable natural organic carbon and hydrolyzable amino acids in aquifer sediments

This study evaluated the relationship between concentrations of operationally defined potentially bioavailable organic -carbon (PBOC) and hydrolyzable amino acids (HAAs) in sediments collected from a diverse range of chloroethene--contaminated sites. Concentrations of PBOC and HAA were measured using aquifer sediment samples collected at six selected study sites. Average concentrations of total HAA and PBOC ranged from 1.96 ± 1.53 to 20.1 ± 25.6 mg/kg and 4.72 ± 0.72 to 443 ± 65.4 mg/kg, respectively. Results demonstrated a statistically significant positive relationship between concentrations of PBOC and total HAA present in the aquifer sediment (p < 0.05). Higher levels of HAA were consistently observed at sites with greater levels of PBOC and first-order decay rates. Because amino acids are known to be readily biodegradable carbon compounds, this relationship suggests that the sequential chemical extraction procedure used to measure PBOC is a useful indicator of bioavailable carbon in aquifer sediments. This, in turn, is consistent with the interpretation that PBOC measurements can be used for estimating the amount of natural organic carbon available for driving the reductive dechlorination of chloroethenes in groundwater systems.

Ground Water Monitoring and Remediation↗

USGS1992

Predation by northern squawfish on live and dead juvenile Chinook salmon

Northern squafish Ptychocheilus oregonensis is a major predator of juvenile salmonids Oncorhynchus spp. migrating downstream through the Columbia River. High predation rates occur just below dams. If northern squafish selectively consume salmonids killed or injured during dam passage, previous estimates of predation mortality may be too high. We conducted laboratory experiments that indicate northern squafish prefer dead juvenile chinook salmon O. tshawytscha over live individuals. When equal numbers of dead and live chinook salmon were offered to northern squafish maintained on a natural photoperiod (15 h light: 9 h darkness), significantly more ( P < 0.05) dead than live fish were consumed, both in 1,400-L circular tanks and in an 11,300-L raceway (62% and 79% of prey consumed were dead, respectively). When dead and live juvenile chinook salmon were provided in proportions more similar to those below dams (20% dead, 80% live), northern squafish still selected for dead prey (36% of fish consumed were dead). In additional experiments, northern squafish were offered a proportion of 20% dead juvenile chinook salmon during 4-h periods of either light or darkness. The predators were much more selective for dead chinook salmon during bright light (88% of fish consumed were dead) than during darkness (31% were dead).

Transactions of the American Fisheries Society↗

USGS1979

Selected bibliography on subsidence processes and related engineering problems in carbonate rocks

The Solution Subsidence and Collapse project is a U.S. Geological Survey research activity funded by the Reactor Hazards Research program. The objective of the study is to determine the geologic and hydrologic controls and mechanisms of ground subsidence in soluble rock terranes caused by natural processes and man's activities. The results of the research will be used for the general geologic characterization of proposed and existing nuclear reactor sites in regions underlain by soluble rocks. In addition, the knowledge gained from the study will be applied to defining potential geologic hazards in soluble rock areas where ground subsidence or collapse can occur. The Solution Subsidence and Collapse project is divided into two study units, one looking at subsidence in evaporitic terranes, the other in carbonate terranes. Each of the two geologic environments has its own unique set of conditions that lead to subsidence and, therefore, each warrants its own special study. As part of the subsidence study a selected bibliography covering various topics on ground subsidence in carbonate karst terranes was compiled and is presented here. The entries in the bibliography are placed in five categories: (1) General; (2) Geology, Geomorphology, Hydrology; (3) Caves, Solution Channels; (4) Subsidence, Sinkholes; and (5) Engineering, Land Use, Detection. A separate bibliography on ground subsidence caused by dissolution and removal of salt and other soluble evaporites has been published as a companion reference to this report (Ege, 1979).

Open-File Report↗

USGS1962

Physical properties of evaporite minerals

The data in the following tables were abstracted from measurements of physical properties of evaporite minerals or of equivalent synthetic compounds. The compounds considered are the halide and sulfate salts which supposedly precipitated from evaporating ocean water and which form very extensive and thick "rock salt" beds. These beds are composed almost entirely of NaCl. In places where the beds are deeply buried and where fractures occur in the overlying rocks, the salt is plastically extruded upward as in a pipe to form the "salt domes". Most of the tables are for NaCl, both the natural (halite) and the synthetic salt, polycrystalline and single crystals. These measurements have been collected for use 1) in studies on storage of radioactive wastes in salt domes or beds, 2) in calculations concerned with nuclear tests in salt domes and beds, and 3) in studies of phenomena in salt of geologic interest. Rather than an exhaustive compilation of physical property measurements, there tables represent a summary of data from accessible sources. As limitations of time have presented making a more systematic and comprehensive selection, the data given may seem arbitrarily chosen. Some of the data listed are old, and newer, more accurate data are undoubtedly available. Halite (an synthetic NaCl) has been very thoroughly studied because of its relatively simple and highly symmetrical crystal structure, its easy availability naturally or synthetically, both in single crystals and polycrystalline, its useful and scientifically interesting properties, and its role as a compound of almost purely ionic bonding. The measurements of NaCl in the tables, however, represent only a small part of the total number of observations; discrimination was necessary to keep the size of the tabulations manageable. The physical properties of the evaporite minerals other than halite and sylvite have received only desultory attention of experiementalists, and appear in only a few tables. The effects of temperature, hydrostatic pressure, stress difference, and other mechanical, eletrical, and optical conditions on the physical properties have probably been observed more completely on NaCl than on any other solid substance, which makes it a unique and important substance. Several new and important phenomena have been observed first on it. The mechanical properties of NaCl, for example, depend very strongly on the condition and the composition of the gas or liquid in contact with the sample surface; the data are sparse as yet and are not reported here.

Trace Elements Investigations↗

USGS2005

Effects of forest structure and composition on food availability for Varecia variegata at Ranomafana National Park, Madagascar

We present a summary of a long-term field study that examined the effects of forest disturbance on the availability of palatable fruit and its utilization by V. variegata. Forest structure and tree species composition were measured in three adjacent study areas, with different histories of disturbance, in Ranomafana National Park (RNP), Madagascar. V. variegata abundance was monitored by frequent encounters with resident groups and periodic censuses conducted along trails. Finally, the abundance of mature fruit in species used by V. variegata was scored monthly at representative trees at several locations. V. variegata abundance was most consistent in the least anthropogenically disturbed site, while no established lemur groups were observed in the heavily logged site for over a decade post-harvest. Lemur abundance was variable in the selectively logged site. The presence of select food trees, particularly specimens with voluminous crowns capable of producing abundant fruit crops, appears to be key to the establishment and expansion of V variegata groups. Our analysis of year-long fruit utilization revealed a high degree of preference for several species of trees. Two species exhibited mature fruit in a low percentage of stems but were available for a protracted period of time, while two additional species showed high intraspecific fruiting synchrony and were available for a shorter period of time. These contrasting phenologies, rather than the individual tree species, may be most important to V. variegata due to their coincident timing of fruit maturation with key lemur life-history events. Any disturbance-natural or anthropogenic-that disrupts the phenology cycles of food trees has the potential to impact lemur abundance and dispersion. Intense disturbances, such as heavy logging or severe cyclones, have long-lasting impacts on fruit production, while selective logging or moderate cyclonic windthrow cause more transient impacts. V. variegata is adapted to deal with an intrinsically erratic food supply by virtue of its reproductive biology and social behavior.

American Journal of Primatology↗

USGS2009

Water-level conditions in selected confined aquifers of the New Jersey and Delaware coastal plain, 2003

The Coastal Plain aquifers of New Jersey provide an important source of water for more than 2 million people. Steadily increasing withdrawals from the late 1800s to the early 1990s resulted in declining water levels and the formation of regional cones of depression. In addition to decreasing water supplies, declining water levels in the confined aquifers have led to reversals in natural hydraulic gradients that have, in some areas, induced the flow of saline water from surface-water bodies and adjacent aquifers to freshwater aquifers. In 1978, the U.S. Geological Survey began mapping the potentiometric surfaces of the major confined aquifers of New Jersey every 5 years in order to provide a regional assessment of ground-water conditions in multiple Coastal Plain aquifers concurrently. In 1988, mapping of selected potentiometric surfaces was extended into Delaware. During the fall of 2003, water levels measured in 967 wells in New Jersey, Pennsylvania, northeastern Delaware, and northwestern Maryland were used estimate the potentiometric surface of the principal confined aquifers in the Coastal Plain of New Jersey and five equivalent aquifers in Delaware. Potentiometric-surface maps and hydrogeologic sections were prepared for the confined Cohansey aquifer of Cape May County, the Rio Grande water-bearing zone, the Atlantic City 800-foot sand, the Vincentown aquifer, and the Englishtown aquifer system in New Jersey, as well as for the Piney Point aquifer, the Wenonah-Mount Laurel aquifer, and the Upper Potomac-Raritan-Magothy, the Middle and undifferentiated Potomac-Raritan-Magothy, and the Lower Potomac-Raritan-Magothy aquifers in New Jersey and their equivalents in Delaware. From 1998 to 2003, water levels in many Coastal Plain aquifers in New Jersey remained stable or had recovered, but in some areas, water levels continued to decline as a result of pumping. In the Cohansey aquifer in Cape May County, water levels near the center of the cone of depression underlying the southern part of the peninsula remained about the same as in 1998. To the south, recoveries up to 8 feet were observed in southern Lower Township as withdrawals had decreased since 1998. In the northern part of Cape May County, water levels had not changed substantially from historic conditions. In the Rio Grande water-bearing zone, water levels rose by as much as 13 ft at the Rio Grande well field; elsewhere across the aquifer, little change had occurred. In the Atlantic City 800-foot sand, water-level changes were greatest in southern Cape May County; at the Cape May desalination wells, water levels were as much as 32 ft lower in 2003 than in 1998. In contrast, water levels at the center of a regional cone of depression near Atlantic City rose by as much as 10 ft. Within the Piney Point aquifer water levels rose by 46 ft near Seaside Park. Similarly, water levels increased by more than 30 ft in and around the major cone of depression underlying Dover, Delaware. In the Vincentown aquifer, water levels stabilized or recovered by 2 ft to 6 ft from 1998 to 2003 in most of the wells measured; the exception is near Adelphia in Monmouth County, where water levels rose by as much as 18 ft. From 1998 to 2003, water levels near the center of a large cone of depression that extends from Monmouth to Ocean County recovered by as much as 20 ft in the Wenonah-Mount Laurel aquifer. Concurrently, ground-water levels within the Englishtown aquifer system declined by as much as 13 ft in the same area. Water levels across much of the Upper Potomac-Raritan-Magothy aquifer in the northern Coastal Plain remained about the same as 5 years previous, except in northern Ocean County where ground-water levels declined 10 ft to 33 ft. Water levels in the Middle Potomac-Raritan-Magothy aquifer declined from 5 to 9 ft along the border between Monmouth and Middlesex County. Elsewhere, across the northern part of the Coastal Plain, water levels stabilized within the Cretaceous-a

Delaware, New Jersey↗

USGS2011

PEPA-1* genotype affects return rate for hatchery steelhead

Allozymes continue to be useful as genetic markers in a variety of studies; however, their utility often hinges on the selective neutrality of the allelic variation. Our study tested for neutrality between the two most common alleles (*100 and *110) at the cytosol nonspecific dipeptidase locus (PEPA-1*) in steelhead Oncorhynchus mykiss from Dworshak National Fish Hatchery in Idaho. We tested for differential growth and survival among fish with the * 100/100, *100/ 110, and *110/110 genotypes rearing in a hatchery or a natural stream. We repeated the study for two year-classes, using heterozygous (*100/110) adults to make the experimental crosses. This design avoided differences in family contribution among genotypes because each cross produced all three genotypes. We divided the progeny from each family into two groups. One group was reared in a hatchery for 1 year and then released for migration to the sea and subsequent return to the hatchery as adults. The other group was released into a natural stream and monitored for 3 years. We found no significant differences in size or survival among PEPA-1* genotypes for either the naturally reared fish or the hatchery-reared fish immediately prior to release as smolts. For females, survival to returning adult also was similar among genotypes; however, hatchery-reared males with the *110/110 genotype returned at a higher rate than did males with the *100/ 100 genotype; heterozygous males were intermediate. These results indicate that selection occurs at the PEPA-1* locus or at one or more loci tightly linked to it. The finding of nearly equal frequencies for these two alleles in the source population suggests that selection differentials among genotypes reverse or vary from year to year; otherwise, steady directional selection would drive the *100 allele to low frequencies or extinction. Locus PEPA-1* seems inappropriate for genetic marks in studies of steelhead that span the full life cycle and probably should be avoided for any portion of the life cycle. Inferences about gene flow and population structure from studies that are substantially influenced by PEPA-1* allele frequencies might be misleading. ?? Copyright by the American Fisheries Society 2006.

Transactions of the American Fisheries Society↗

USGS2001

Sediment deposition and trends and transport of phosphorus and other chemical constituents, Cheney Reservoir watershed, south-central Kansas

Sediment deposition, water-quality trends, and mass transport of phosphorus, nitrogen, selected trace elements, and selected pesticides within the Cheney Reservoir watershed in south-central Kansas were investigated using bathymetric survey data and reservoir bottom-sediment cores. Sediment loads in the reservoir were investigated by comparing 1964 topographic data to 1998 bathymetric survey data. Approximately 7,100 acre-feet of sediment deposition occurred in Cheney Reservoir from 1965 through 1998. As of 1998, sediment had filled 27 percent of the reservoir's inactive conservation storage pool, which is less than the design estimate of 34 percent. Mean annual sediment deposition was 209 acre-feet per year, or 0.22 acre-feet per year per square mile, and the mean annual sediment load was 453 million pounds per year. During the 3-year period from 1997 through 1999, 23 sediment cores were collected from the reservoir, and subsamples were analyzed for nutrients (phosphorus and nitrogen species), selected trace elements, and selected organic pesticides. Mean concentrations of total phosphorus in reservoir bottom sediment ranged from 94 milligrams per kilogram at the upstream end of the reservoir to 710 milligrams per kilogram farther downstream near the reservoir dam. The mean concentration for all sites was 480 milligrams per kilogram. Total phosphorus concentrations were greatest when more silt- and clay-sized particles were present. The implications are that if anoxic conditions (inadequate oxygen) occur near the dam, phosphorus could be released from the sediment and affect the drinking-water supply. Analysis of selected cores also indicates that total phosphorus concentrations in the reservoir sediment increased over time and were probably the result of nonpoint-source activities in the watershed, such as increased fertilizer use and livestock production. Mean annual phosphorus loading to Cheney Reservoir was estimated to be 226,000 pounds per year on the basis of calculations from deposited sediment in the reservoir. Mean total phosphorus concentration in the surface-water inflow to Cheney Reservoir was 0.76 milligram per liter, mean annual phosphorus yield of the watershed was estimated to be 0.38 pound per year per acre, and both are based on sediment deposition in the reservoir. A comparison of the Cheney Reservoir watershed to the Webster Reservoir, Tuttle Creek Lake, and Hillsdale Lake watersheds showed that phosphorus yields were smallest in the Webster Reservoir watershed where precipitation was less than in the other watersheds. Mean concentrations of total ammonia plus organic nitrogen in bottom sediment from Cheney Reservoir ranged from 1,200 to 2,400 milligrams per kilogram as nitrogen. A regression analysis between total ammonia plus organic nitrogen as nitrogen and sediment particle size showed a strong relation between the two variables and suggests, as with phosphorus, that total ammonia plus organic nitrogen as nitrogen adsorbs to the silt- and clay-sized particles that are transported to the deeper parts of the reservoir. An analysis of trends with depth of total ammonia plus organic nitrogen as nitrogen did not indicate a strong relation between the two variables despite the increase in fertilizer use in the watershed during the past 40 years. Selected cores were analyzed for trace elements. Concentrations of arsenic, chromium, copper, and nickel at many sites exceeded levels where adverse effects on aquatic organisms sometimes occur. Larger concentrations of these elements also occurred in sediment closer to the reservoir dam where there is a larger percentage of silt and clay in the bottom sediment than farther upstream. However, the lack of industrial or commercial land use in the watershed suggests that these concentrations may be the result of natural conditions. Organochlorine insecticides were detected in the reservoir-bottom sediment in Cheney Reservoir. DDT and its degradation products DDD and DDE were detected in analyzed samples but at concentrations that were less than the U.S. Environmental Protection Agency's recommended guidelines for these compounds. Similarly, selected organophosphate insecticides and acetanilide, chlorophenoxy-acid, and triazine herbicides were analyzed in reservoir sediment samples; however, only small concentrations of the acetanilide herbicide metolachlor were detected. The reservoir sediment investigation at Cheney Reservoir was used to reconstruct historical trends in water quality and can be used to measure the effectiveness of best-management practices that have been implemented throughout the reservoir watershed. With the addition of bathymetric surveys and the inclusion of additional reservoir watersheds, sediment investigations also can be used to estimate historical loading of phosphorus and other constituents in future water-quality assessments throughout Kansas.

Kansas↗

USGS2011

Status and understanding of groundwater quality in the San Diego Drainages Hydrogeologic Province, 2004: California GAMA Priority Basin Project

Groundwater quality in the approximately 3,900-square-mile (mi 2 ) San Diego Drainages Hydrogeologic Province (hereinafter San Diego) study unit was investigated from May through July 2004 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The study unit is located in southwestern California in the counties of San Diego, Riverside, and Orange. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory. The GAMA San Diego study was designed to provide a statistically robust assessment of untreated-groundwater quality within the primary aquifer systems. The assessment is based on water-quality and ancillary data collected by the USGS from 58 wells in 2004 and water-quality data from the California Department of Public Health (CDPH) database. The primary aquifer systems (hereinafter referred to as the primary aquifers) were defined by the depth interval of the wells listed in the California Department of Public Health (CDPH) database for the San Diego study unit. The San Diego study unit consisted of four study areas: Temecula Valley (140 mi 2 ), Warner Valley (34 mi 2 ), Alluvial Basins (166 mi 2 ), and Hard Rock (850 mi 2 ). The quality of groundwater in shallow or deep water-bearing zones may differ from that in the primary aquifers. For example, shallow groundwater may be more vulnerable to surficial contamination than groundwater in deep water-bearing zones. This study had two components: the status assessment and the understanding assessment. The first component of this study-the status assessment of the current quality of the groundwater resource-was assessed by using data from samples analyzed for volatile organic compounds (VOC), pesticides, and naturally occurring inorganic constituents, such as major ions and trace elements. The status assessment is intended to characterize the quality of groundwater resources within the primary aquifers of the San Diego study unit, not the treated drinking water delivered to consumers by water purveyors. The second component of this study-the understanding assessment-identified the natural and human factors that affect groundwater quality by evaluating land use, well construction, and geochemical conditions of the aquifer. Results from these evaluations were used to help explain the occurrence and distribution of selected constituents in the study unit. Relative-concentrations (sample concentration divided by benchmark concentration) were used as the primary metric for relating concentrations of constituents in groundwater samples to water-quality benchmarks for those constituents that have Federal and (or) California benchmarks. For organic and special-interest constituents, relative-concentrations were classified as high (> 1.0), moderate (> 0.1 and ≤1.0), and low (≤0.1). For inorganic constituents, relative concentrations were classified as high (> 1.0), moderate (> 0.5 and ≤1.0), and low (≤0.5). Grid-based and spatially weighted approaches were then used to evaluate the proportion of the primary aquifers (aquifer-scale proportions) with high, moderate, and low relative-concentrations for individual compounds and classes of constituents. One or more of the inorganic constituents with health-based benchmarks were high (relative to those benchmarks) in 17.6 percent of the primary aquifers in the Temecula Valley, Warner Valley, and Alluvial Basins study areas (hereinafter also collectively referred to as the Alluvial Fill study areas because they are composed of alluvial fill aquifers), and in 25.0 percent of the Hard Rock study area. Inorganic constituents with health-based benchmarks that were frequently detected at high relative-concentrations included vanadium (V), arsenic (As), and boron (B). Vanadium and As concentrations were not significantly correlated to either urban or agricultural land use indicating natural sources as the primary contributors of these constituents to groundwater. The positive correlation of B concentration to urban land-use was significant which indicates that anthropogenic activities are a contributing source of B to groundwater. The correlation of V, As and B concentrations to pH was positive, indicating that in alkaline groundwater these constituents are being desorbed from, or being inhibited from adsorbing to, particle surfaces. Inorganic constituents with aesthetic benchmarks that were detected at high relative-concentrations include manganese (Mn), iron (Fe), and total dissolved solids (TDS). In the Alluvial Fill study areas, Mn and TDS were detected at high relative-concentrations in 13.7 percent of the primary aquifers, and Fe in 6.9 percent. In the Hard Rock study area, Mn was detected at high relative-concentrations in 33.3 percent of the primary aquifers, and TDS in 16.7 percent; Fe was not detected at high relative-concentrations. Total dissolved solids concentrations were significantly correlated to agricultural land use suggesting that agricultural practices are a contributing source of TDS to groundwater. Manganese and Fe concentrations were highest in groundwater with low dissolved oxygen and pH indicating that the reductive dissolution of oxyhydroxides may be an important mechanism for the mobilization of Mn and Fe in groundwater. TDS concentrations were highest in shallow wells and in modern (< 50 yrs) groundwater which indicates anthropogenic activities as a source of TDS concentrations in groundwater. The relative-concentrations of organic constituents with health-based benchmarks were high in 3.0 percent of the primary aquifers in the Alluvial Fill study areas. A single detection in the Alluvial Basins study area of the discontinued gasoline oxygenate methyl tert-butyl ether (MTBE) was the only organic constituent detected at a high relative-concentration; high relative-concentrations of these constituents were not detected in the Hard Rock study area. Twelve of 88 VOCs and 14 of 123 pesticides and pesticide degradates analyzed in grid wells were detected. Chloroform was the only VOC detected in more than 10 percent of the grid wells. The herbicides simazine, atrazine, and prometon were each detected in greater than 10 percent of the grid wells. Perchlorate was detected in 22 percent of the grid wells sampled. The understanding assessment showed a significant correlation of trihalomethanes (THMs) and solvents to urban land-use, indicating that detections of these constituents are more likely to occur in groundwater underlying urbanized areas of the study unit. MTBE concentrations were negatively correlated to the distance from the nearest leaking underground fuel tank, indicating that point sources are the most significant contributing factor for MTBE concentrations to groundwater in the study unit. The positive correlation of THM and herbicide concentrations to modern groundwater was significant, as was the negative correlation of herbicide concentrations to pH and anoxic groundwater. The negative correlation of herbicides to pH and anoxic groundwater was likely due to the fact that these constituents were detected more frequently in shallow wells where groundwater conditions tend to be oxic with relatively low pH.

California↗

USGS2004

Characterization of Ground-Water Quality, Upper Republican Natural Resources District, Nebraska, 1998-2001

Nearly all rural inhabitants and livestock in the Upper Republican Natural Resources District (URNRD) in southwestern Nebraska use ground water that can be affected by elevated nitrate concentrations. The development of ground-water irrigation in this area has increased the vulnerability of ground water to the introduction of fertilizers and other agricultural chemicals. In 1998, the U.S. Geological Survey, in cooperation with the Upper Republican Natural Resources District, began a study to characterize the quality of ground water in the Upper Republican Natural Resources District area with respect to physical properties and concentrations of major ions, coliform bacteria, nitrate, and pesticides, and to assess the presence of nitrogen concentrations in the unsaturated zone. At selected well sites, the ground-water characterization also included tritium and nitrogen-isotope analyses to provide information about the approximate age of the ground water and potential sources of nitrogen detected in ground-water samples, respectively. In 1998, ground-water samples were collected from 101 randomly selected domestic-well sites. Of the 101 samples collected, 26 tested positive for total coliform bacteria, exceeding the U.S. Environmental Protection Agency's Maximum Contaminant Level (MCL) of zero colonies. In 1999, ground-water samples were collected from 31 of the 101 well sites, and 16 tested positive for coliform bacteria. Nitrates were detected in ground water from all domestic-well samples and from all but four of the irrigation-well samples collected from 1998 to 2001. Eight percent of the domestic-well samples and 3 percent of the irrigation-well samples had nitrate concentrations exceeding the U.S. Environmental Protection Agency's MCL for drinking water of 10 milligrams per liter. Areas with nitrate concentrations exceeding 6 milligrams per liter, the URNRD's ground-water management-plan action level, were found predominantly in north-central Chase, western and south-central Dundy, and south-central Perkins Counties. Generally, these concentrations were detected in samples from wells located in upland areas with permeable soils and a high percentage of cropland. In 1999, 31 of the ground-water samples collected from irrigation wells were analyzed for pesticides, and 14 samples (45 percent) had detectable concentrations of at least one pesticide compound. In 2000, all of the 23 irrigation-well samples analyzed had one or more pesticides present at detectable concentrations. In 2001, 12 of 26 domestic-well samples (46 percent) had detectable concentrations. Although the analytical method used during the study was changed to increase the number of pesticides included in the analyses, the pesticides detected in the ground-water samples from domestic and irrigation wells were limited to the commonly used herbicide compounds acetochlor, alachlor, atrazine, metolachlor, prometon, propachlor, propazine, trifluralin, and the atrazine degradation product deethylatrazine. Of the compounds detected, only atrazine (3.0 micrograms per liter) and alachlor (2.0 micrograms per liter) have MCLs established by the U.S. Environmental Protection Agency. None of the ground-water samples from the URNRD study area had concentrations that exceeded either MCL. Tritium age-dating analyses indicate water from about one-third of the sites entered the ground-water system prior to 1952. Because the increase in agricultural practices occurred during the 1950s and 1960s, it can be assumed that this water was not influenced by agricultural practices. Nitrogen-isotope speciation analyses for samples from three irrigation wells indicated that the source of nitrates in the ground water probably is synthetic fertilizer; however, the source at most irrigation wells probably is either naturally occurring or a mixture of water from various anthropogenic sources (such as synthetic fertilizer and animal waste).

Scientific Investigations Report↗

USGS1994

Neural networks for river flow prediction

The surface‐water hydrographs of rivers exhibit large variations due to many natural phenomena. One of the most commonly used approaches for interpolating and extending streamflow records is to fit observed data with an analytic power model. However, such analytic models may not adequately represent the flow process, because they are based on many simplifying assumptions about the natural phenomena that influence the river flow. This paper demonstrates how a neural network can be used as an adaptive model synthesizer as well as a predictor. Issues such as selecting an appropriate neural network architecture and a correct training algorithm as well as presenting data to neural networks are addressed using a constructive algorithm called the cascade‐correlation algorithm. The neural‐network approach is applied to the flow prediction of the Huron River at the Dexter sampling station, near Ann Arbor, Mich. Empirical comparisons are performed between the predictive capability of the neural network models and the most commonly used analytic nonlinear power model in terms of accuracy and convenience of use. Our preliminary results are quite encouraging. An analysis performed on the structure of the networks developed by the cascade‐correlation algorithm shows that the neural networks are capable of adapting their complexity to match changes in the flow history and that the models developed by the neural‐network approach are more complex than the power model.

Journal of Computing in Civil Engineering↗

USGS2020

Shifting food web structure during dam removal—Disturbance and recovery during a major restoration action

We measured food availability and diet composition of juvenile salmonids over multiple years and seasons before and during the world’s largest dam removal on the Elwha River, Washington State. We conducted these measurements over three sediment-impacted sections (the estuary and two sections of the river downstream of each dam) and compared these to data collected from mainstem tributaries not directly affected by the massive amount of sediment released from the reservoirs. We found that sediment impacts from dam removal significantly reduced invertebrate prey availability, but juvenile salmon adjusted their foraging so that the amount of energy in diets was similar before and during dam removal. This general pattern was seen in both river and estuary habitats, although the mechanisms driving the change and the response differed between habitats. In the estuary, the dietary shifts were related to changes in invertebrate assemblages following a hydrological transition from brackish to freshwater caused by sediment deposition at the river’s mouth. The loss of brackish invertebrate species caused fish to increase piscivory and rely on new prey sources such as plankton. In the river, energy provided to fish by Ephemeroptera, Plecoptera, and Trichoptera taxa before dam removal was replaced first by terrestrial invertebrates, and then by sediment-tolerant taxa such as Chironomidae. The results of our study are consistent with many others that have shown sharp declines in invertebrate density during dam removal. Our study further shows how those changes can move through the food web and affect fish diet composition, selectivity, and energy availability. As we move further along the dam removal response trajectory, we hypothesize that food web complexity will continue to increase as annual sediment load now approaches natural background levels, anadromous fish have recolonized the majority of the watershed between and above the former dams, and revegetation and microhabitats continue to develop in the estuary.

Washington↗

USGS2012

Temperature logging of groundwater in bedrock wells for geothermal gradient characterization in New Hampshire, 2012

The U.S. Geological Survey, in cooperation with the New Hampshire Geological Survey, measured the fluid temperature of groundwater in deep bedrock wells in the State of New Hampshire in order to characterize geothermal gradients in bedrock. All wells selected for the study had low water yields, which correspond to low groundwater flow from fractures. This reduced the potential for flow-induced temperature changes that would mask the natural geothermal gradient in the bedrock. All the wells included in this study were privately owned, and permission to use the wells was obtained from homeowners before logging. Maximum groundwater temperatures at the bottom of the logs were between 11.7 and 17.3 degrees Celsius. Geothermal gradients were generally higher than typically reported for other water wells in the United States. Some of the high gradients were associated with high natural gamma emissions. Groundwater flow was discernible in 5 of the 10 wells studied but only obscured the portion of the geothermal gradient signal where groundwater actually flowed through the well. Temperature gradients varied by mapped bedrock type but can also vary by differences in mineralogy or rock type within the wells.

New Hampshire↗

USGS2010

User's guide for MAGIC-Meteorologic and hydrologic genscn (generate scenarios) input converter

Meteorologic and hydrologic data used in watershed modeling studies are collected by various agencies and organizations, and stored in various formats. Data may be in a raw, un-processed format with little or no quality control, or may be checked for validity before being made available. Flood-simulation systems require data in near real-time so that adequate flood warnings can be made. Additionally, forecasted data are needed to operate flood-control structures to potentially mitigate flood damages. Because real-time data are of a provisional nature, missing data may need to be estimated for use in floodsimulation systems. The Meteorologic and Hydrologic GenScn (Generate Scenarios) Input Converter (MAGIC) can be used to convert data from selected formats into the Hydrologic Simulation System-Fortran hourly-observations format for input to a Watershed Data Management database, for use in hydrologic modeling studies. MAGIC also can reformat the data to the Full Equations model time-series format, for use in hydraulic modeling studies. Examples of the application of MAGIC for use in the flood-simulation system for Salt Creek in northeastern Illinois are presented in this report.

Open-File Report↗

USGS2005

Ground-water movement and nitrate in ground water, East Erda area, Tooele County, Utah, 1997-2000

Nitrate was discovered in ground water in the east Erda area of Tooele County, Utah, in 1994. The U.S. Geological Survey, in cooperation with Tooele County, investigated the ground-water flow system and water quality in the eastern part of Tooele Valley to determine (1) the vertical and horizontal distribution of nitrate, (2) the direction of movement of the nitrate contamination, and (3) the source of the nitrate. The potentiometric surface of the upper part of the basin-fill aquifer indicates that the general direction of ground-water flow is to the northwest, the flow system is complex, and there is a ground-water mound probably associated with springs. The spatial distribution of nitrate reflects the flow system with the nitrate contamination split into a north and south part by the ground-water mound. The distribution of dissolved solids and sulfate in ground water varies spatially. Vertical profiles of nitrate in water from selected wells indicate that nitrate contamination generally is in the upper part of the saturated zone and in some wells has moved downward. Septic systems, mining and smelting, agriculture, and natural sources were considered to be possible sources of nitrate contamination in the east Erda area. Septic systems are not the source of nitrate because water from wells drilled upgradient of all septic systems in the area had elevated nitrate concentrations. Mining and smelting activity are a possible source of nitrate contamination but few data are available to link nitrate contamination with mining sites. Natural and agricultural sources of nitrate are present east of the Erda area but few data are available about these sources. The source(s) of nitrate in the east Erda area could not be clearly delineated in spite of considerable effort and expenditure of resources.

Utah↗

USGS2005

Effects of Surface-Water Diversions on Habitat Availability for Native Macrofauna, Northeast Maui, Hawaii

Effects of surface-water diversions on habitat availability for native stream fauna (fish, shrimp, and snails) are described for 21 streams in northeast Maui, Hawaii. Five streams (Waikamoi, Honomanu, Wailuanui, Kopiliula, and Hanawi Streams) were chosen as representative streams for intensive study. On each of the five streams, three representative reaches were selected: (1) immediately upstream of major surface-water diversions, (2) midway to the coast, and (3) near the coast. This study focused on five amphidromous native aquatic species (alamoo, nopili, nakea, opae, and hihiwai) that are abundant in the study area. The Physical Habitat Simulation (PHABSIM) System, which incorporates hydrology, stream morphology and microhabitat preferences to explore relations between streamflow and habitat availability, was used to simulate habitat/discharge relations for various species and life stages, and to provide quantitative habitat comparisons at different streamflows of interest. Hydrologic data, collected over a range of low-flow discharges, were used to calibrate hydraulic models of selected transects across the streams. The models were then used to predict water depth and velocity (expressed as a Froude number) over a range of discharges up to estimates of natural median streamflow. The biological importance of the stream hydraulic attributes was then assessed with the statistically derived suitability criteria for each native species and life stage that were developed as part of this study to produce a relation between discharge and habitat availability. The final output was expressed as a weighted habitat area of streambed for a representative stream reach. PHABSIM model results are presented to show the area of estimated usable bed habitat over a range of streamflows relative to natural conditions. In general, the models show a continuous decrease in habitat for all modeled species as streamflow is decreased from natural conditions. The PHABSIM modeling results from the intensively studied streams were normalized to develop relations between the relative amount of diversion from a stream and the resulting relative change in habitat in the stream. These relations can be used to estimate changes in habitat for diverted streams in the study area that were not intensively studied. The relations indicate that the addition of even a small amount of water to a dry stream has a significant effect on the amount of habitat available. Equations relating stream base-flow changes to habitat changes can be used to provide an estimate of the relative habitat change in the study area streams for which estimates of diverted and natural median base flow have been determined but for which detailed habitat models were not developed. Stream water temperatures, which could have an effect on stream ecology and taro cultivation, were measured in five streams in the study area. In general, the stream temperatures measured at any of the monitoring sites were not elevated enough, based on currently available information, to adversely effect the growth or mortality of native aquatic macrofauna or to cause wetland taro to be susceptible to fungi and associated rotting diseases.

Scientific Investigations Report↗

USGS1979

Variation of alluvial-channel width with discharge and character of sediment

Use of channel measurements to estimate discharge characteristics of alluvial streams has shown that little agreement exists for the exponent of the width-discharge relation. For the equation Q = aWAb, where Q is mean discharge and WA is active-channel width, it is proposed that the exponent, b, should be of fixed value for most natural, perennial, alluvial stream channels and that the coefficient, a, varies with the characteristics of the bed and bank material. Three groups of perennial stream channels with differing characteristics were selected for study using consistent procedures of data collection. A common feature of the groups was general channel stability, that is, absence of excessive widening by erosive discharges. Group 1 consisted of 32 channels of gradient exceeding 0.0080, low suspended-sediment discharge, high channel roughness, and low discharge variability. Group 2 consisted of 13 streams in Kansas having at least 70 percent silt and clay in the bed material and having similar discharge variability, climate, gradient, and riparian vegetation. Group 3, in southern Missouri, consisted of discharge channels of 18 springs having similar conditions of very low discharge variability, climate and vegetation, but variable bed and bank material. Values for the exponent for the three groups of data are 1.98, 1.97, and 1.97, respectively, whereas values of the coefficients are 0.017, 0.042, and 0.011 when discharge is expressed in cubic meters per second and width is in meters. The relation for high-gradient channels (group 1) is supported by published data from laboratory flumes. The similarity of the three values of the exponent demonstrates that a standard exponent of 2.0, significant to two figures, is reasonable for the width-mean discharge relation of perennial, alluvial stream channels, and that the exponent is independent of other variables. Using a fixed exponent of 2.0, a family of simple power-function equations was developed expressing the manner in which channel sediment affects the width-discharge relation.

Water-Resources Investigations Report↗