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USGS2025

Greater white-fronted goose habitat use in Louisiana provides water depth management insights

Numerous waterfowl species have altered their geographic distribution in recent decades. The greater white-fronted goose ( Anser albifrons ) has shifted its wintering distribution from coastal marshes in Texas and Louisiana, USA, to interior landscapes, creating challenges for conservation managers. Although the range shift has been primarily attributed to landscape-scale changes in rice production, effects of fine-scale habitat conditions on greater white-fronted goose habitat use are unknown. Thus, information on fine-scale environmental conditions could provide information to managers working to mitigate effects of the shift. We used global positioning system neck collars to monitor 78 greater white-fronted geese in Louisiana each winter during 2016–2019 and visited all used locations to record vegetation height, water depth, and land cover. We modeled greater white-fronted goose habitat use in 4 regions across Louisiana (central, coastal, north, southwest), and evaluated effects of vegetation height, water depth, land cover, and interactions. In our candidate model set, we included a sampling null, which accounted for differences in sampling frequencies among hunt seasons and diel periods. The top model in the central, coastal, and north regions included water depth, whereas the top model in the southwest region included water depth, vegetation height, and land cover. Parameter estimates and confidence intervals indicated that goose habitat use was higher at sites with >5.1 cm of water compared to dry sites or sites with <5.1 cm of water. In the southwest region, goose habitat use was highest in areas identified as other land cover (e.g., corn, cotton, rye, sugarcane) and lowest in open water. Although Louisiana has substantial anthropogenic food resources in the form of rice agriculture and abundant grazing opportunities afforded by mild winters, our results indicate that wet areas provide better habitat to greater white-fronted geese than dry areas. New agricultural flooding regimes in Louisiana could improve habitat quality and potentially mitigate some effects of the winter distribution shift.

Louisiana↗

USGS2021

Weather and distance to fire refugia limit landscape‐level occurrence of fungal disease in an exotic annual grass

The enemy release hypothesis proposes that invasion by exotic plant species is driven by their release from natural enemies (i.e. herbivores and pathogens) in their introduced ranges. However, in many cases, natural enemies, which may be introduced or managed to regulate invasive species, may fail to impact target host populations. Landscape heterogeneity, which can affect both the population dynamics of the pathogen and the susceptibility and the density of hosts, may contribute to why pathogens fail to control hosts despite established negative disease impacts. We explored patterns of post‐fire infection of the fungal head‐smut pathogen Ustilago bullata on the invasive annual cheatgrass Bromus tectorum , which has caused the notorious grass‐fire cycle and ecosystem degradation across Western North America. We asked whether infection level was a driver of host density or vice‐versa, and how weather affected infection and how spatial patterns of infection varied with time since fire, using a combination of structural equation modelling (SEM), proportional odds modelling and entropy‐based local indicator of spatial association (ELSA) on data from >700 plots spanning >100,000 ha remeasured annually for 4 years. Observed infection levels increased with greater prior‐year cheatgrass cover, and disease severity did not suppress cheatgrass populations. Warm, humid fall/winters and proximity to fire refugia (unburned patches) were associated with more infections. Infection clustering was most evident 2–3 years following fire with warm‐wet fall–winter conditions and decreased after two drier, colder winters. Synthesis . Severity of fungal disease did not result in measurable reductions of populations of a non‐native, invasive host species, cheatgrass, which suggests that natural enemies may not strongly regulate cheatgrass in its introduced range. Landscape heterogeneity associated with disturbance and weather limited population‐level infection of hosts by the fungal pathogen. Disturbance (specifically wildfire) and variable weather are key components of this and similar invasion systems, and likely need to be considered when evaluating disease dynamics and potential for natural enemies to influence invasion potential.

Journal of Ecology↗

USGS2018

Combining sediment fingerprinting with age-dating sediment using fallout radionuclides for an agricultural stream, Walnut Creek, Iowa, USA

Purpose The main purpose of this study was to demonstrate the utility of the sediment fingerprinting approach to apportion surface-derived sediment, and then age date that portion using short-lived fallout radionuclides. In systems where a large mass of mobile sediment is in channel storage, age dating provides an understanding of the transfer of sediment through the watershed and the time scales over which management actions to reduce sediment loadings may be effective. Materials and methods In the agricultural Walnut Creek watershed, Iowa, the sediment-fingerprinting approach with elemental analysis was used to apportion the sources of fine-grained sediment (croplands, prairie, unpaved roads, and channel banks). Fallout radionuclides ( 7 Be, 210 Pb ex ) were used to age the portion of suspended sediment that was derived from agricultural topsoil. Age dating was performed at two different scales: 210 Pb ex which can date sediment to ~ 85 years and 7 Be to ~ 1 year. Results and discussion Sediment fingerprinting results indicated that the majority of suspended sediment is derived from cropland (62%) with streambanks contributing 36%, and prairie, pasture, and unpaved roads each contributing ≤ 1%. The topsoil–derived portion of sediment (primarily agriculture) dated using 210 Pb ex has ages ranging from 1 to 58 years, and using 7 Be, a component of much younger sediment that yields ages ranging from 44 to 205 days. The occurrence of 7 Be indicates that some portion of the sediment is young, on the order of months, whereas the dating based on 210 Pb ex indicates that some of the surface-derived sediment has been in channel storage for decades. Published studies in Walnut Creek indicate that a large component of sediment is stored in the channel bed. Conclusions We conclude that the 210 Pb ex -based ages are a reasonable estimate for the mean age of the surface-derived fraction and that 7 Be activities are evidence that there is a smaller fraction of very young sediment in the stream. We propose a geomorphic model where agricultural soil is delivered to the channel and conveyed to the watershed outlet at three time scales: a geologic-millennial time scale, decades, and a young time scale (< 1 year).

Iowa↗

USGS2015

Synergistic and singular effects of river discharge and lunar illumination on dam passage of upstream migrant yellow-phase American eels

Monitoring of dam passage can be useful for management and conservation assessments of American eel, particularly if passage counts can be examined over multiple years. During a 7-year study (2007–2013) of upstream migration of American eels within the lower Shenandoah River (Potomac River drainage), we counted and measured American eels at the Millville Dam eel pass, where annual study periods were determined by the timing of the eel pass installation during spring or summer and removal during fall. Daily American eel counts were analysed with negative binomial regression models, with and without a year (YR) effect, and with the following time-varying environmental covariates: river discharge of the Shenandoah River at Millville (RDM) and of the Potomac River at Point of Rocks, lunar illumination (LI), water temperature, and cloud cover. A total of 17 161 yellow-phase American eels used the pass during the seven annual periods, and length measurements were obtained from 9213 individuals (mean = 294 mm TL, s.e. = 0.49, range 183–594 mm). Data on passage counts of American eels supported an additive-effects model (YR + LI + RDM) where parameter estimates were positive for river discharge (β = 7.3, s.e. = 0.01) and negative for LI (β = −1.9, s.e. = 0.34). Interestingly, RDM and LI acted synergistically and singularly as correlates of upstream migration of American eels, but the highest daily counts and multiple-day passage events were associated with increased RDM. Annual installation of the eel pass during late spring or summer prevented an early spring assessment, a period with higher RDM relative to those values obtained during sampling periods. Because increases in river discharge are climatically controlled events, upstream migration events of American eels within the Potomac River drainage are likely linked to the influence of climate variability on flow regime.

Potomac River drainage, Shenandoah River↗

USGS2021

Long-term population fluctuations of a Burrowing Owl population on Kirtland Air Force Base, New Mexico, USA

Western Burrowing Owls ( Athene cunicularia hypugaea ; hereafter, Burrowing Owls) were once widespread residents of grasslands throughout western North America, but their range has contracted, and abundance has declined in some regions. The causes of declines and geographic variation in population trends of Burrowing Owls are unclear but may be linked to changing land use and urbanization. Burrowing Owls are often found in association with airfields and airports, and their presence at such facilities is sometimes considered to be in conflict with those operations. Documenting the long-term persistence of Burrowing Owls at active airfields can help airfield managers who face decisions regarding compatibility of owls and airfield operations. We report the results of a long-term effort to monitor Burrowing Owls on Kirtland Air Force Base in New Mexico, USA, including the rapid recovery of Burrowing Owl numbers from near-extirpation and the relationships between abundance and other demographic traits. The number of breeding pairs of Burrowing Owls increased from one pair in 2013 to 28 pairs in 2019 and 2020, and the number of fledglings produced increased from one in 2013 to 84 in 2019 and 61 in 2020. The recovery was not uniform across all areas of Kirtland Air Force Base, and some formerly occupied areas remained unoccupied. We documented dispersal outside the Air Force base boundary and that the number of breeding pairs was more strongly influenced by the number of offspring produced in the prior year than the number of owls returning from prior years, which indicated that the population is part of a larger meta-population. Our results demonstrate that the maintenance of Burrowing Owl populations is not necessarily at odds with safe airfield operations, that Burrowing Owls exhibit complex population dynamics, and can rapidly recolonize previously occupied areas if habitat and nest sites remain suitable.

New Mexico↗

USGS2024

Assessing the sustainability of Pacific walrus harvest in a changing environment

Harvest sustainability is a primary goal of wildlife management and conservation, and in a changing world, it is increasingly important to consider environmental drivers of population dynamics alongside harvest in cohesive management plans. This is particularly pertinent for harvested species that acutely experience effects of climate change. The Pacific walrus ( Odobenus rosmarus divergens ), a crucial subsistence resource for Indigenous communities, is simultaneously subject to rapid habitat loss associated with diminishing sea ice and an increasing anthropogenic footprint in the Arctic. We developed a theta-logistic population modeling-management framework to evaluate various harvest scenarios combined with 4 potential climate and disturbance scenarios (ranging from optimistic to pessimistic, based largely on sea ice projections from general circulation models) to simulate Pacific walrus population dynamics to the end of the twenty-first century, focusing on the independent-aged female subset of the population. We considered 2 types of harvest strategies: 1) state-dependent harvest scenarios wherein we calculated harvest as a percentage of the population and updated annual harvests at set intervals as the population was reassessed, and 2) annually consistent harvest scenarios wherein annual harvest levels remain consistent into the future. All climate and disturbance scenarios indicated declines of varying severity in Pacific walrus abundance to the end of the twenty-first century, even in the absence of harvest. However, we found that a state-dependent annual harvest of 1.23% of the independent-aged female subset of the population (e.g., 1,280 independent-aged females harvested in 2020, similar to contemporary harvest levels) met our criterion for sustainability under all climate and disturbance scenarios, considering a medium risk tolerance level of 25%. This indicates that the present rate of Pacific walrus harvest is sustainable and will continue to be—provided the population is assessed at regular intervals and harvest is adapted to match changes in population dynamics. Our simulations indicate that a sustainable annually-consistent harvest is also possible but only at low levels if the population declines as expected. Applying a constant annual harvest of 1,280 independent-aged females failed to meet our criterion for sustainability under 3 of the 4 climate and disturbance scenarios we evaluated and had a higher probability of quasi-extinction than an equivalent state-dependent harvest scenario (1.23%). We highlight the importance of state-dependent management strategies and suggest our modeling framework is useful for managing harvest sustainability in a changing climate.

Journal of Wildlife Management↗

USGS2023

Seasonal roost characteristics and fall behavior of coastal populations of Northern Myotis (Myotis septentrionalis)

Temperate bats exhibit seasonal and sex differences in resource selection and activity patterns that are influenced by ambient conditions. During fall, individuals face energetic trade-offs as they make choices relating to migration, mating, and hibernation that may diverge for populations throughout their range. However, research has largely focused on the summer maternity and winter hibernation seasons, whereas the prehibernation period remains comparatively understudied. Northern Myotis ( Myotis septentrionalis ) have experienced precipitous population declines from white-nose syndrome (WNS), leading to their protected status in the United States and Canada. Therefore, understanding their ecology throughout the year is paramount to inform conservation. We compared seasonal roosts and documented fall behaviors between study sites and sexes on 3 islands: Long Island (New York), Martha’s Vineyard, and Nantucket Island (Massachusetts). Between 2017 and 2020, we radio-tracked 54 individuals to analyze activity patterns and characterize fall roosts to compare with previously known summer roosts. Summer tree roosts were of smaller diameter, later stages of decay, and lower canopy closure than those used in fall. Both sexes selected trees of similar diameter and decay stage during fall. Anthropogenic roost use was documented in both seasons but use of anthropogenic structures was greater during fall and increased as the season progressed. Bats made short inter-roost movements with males traveling greater distances than females on average. Activity occurred until late November, with males exhibiting a longer active period than females. We tracked 23% of tagged bats to local hibernacula in subterranean anthropogenic structures, the majority of which were crawlspaces underneath houses. Use of anthropogenic structures for roosts and hibernacula may facilitate survival of this species in coastal regions despite the presence of WNS infections. Timing of restrictions on forest management activities for bat conservation may be mismatched based on prehibernation activity observed in these coastal populations, and the conservation of habitat surrounding anthropogenic roosts or hibernacula may be warranted if the structures themselves cannot be protected.

Massachusetts, New York↗

USGS2022

Density, harvest rates, and growth of a reintroduced American black bear population

Less than 30% of all species reintroductions have been successful and it is important that factors associated with success or failure be identified. Officials experimentally translocated 14 adult female American black bears ( Ursus americanus ) from Great Smoky Mountains National Park, North Carolina and Tennessee, USA, to Big South Fork National River and Recreation Area in the Cumberland Plateau of Kentucky and Tennessee, USA, in 1996–1997. Since that time, the reintroduced bear population has continued to expand in size and range so our study objective was to use spatially explicit capture-recapture methods across a wide spatial extent to estimate bear population abundance and growth. We constructed 440 (223 in KY, 217 in TN) hair traps in our primary sampling area in 2019 arranged in clusters of 4–9 traps/cluster, which we augmented with data from 138 hair traps in a secondary sampling area in Tennessee collected in 2018. We extracted and genotyped DNA from hair samples to construct spatially explicit capture histories, using spatial covariates to model inhomogeneous densities. Population abundance estimates across our 36,035-km 2 study area were 411 males and 406 females excluding cubs. Based on an initial standing population of 18 adult and subadult bears, the mean annual growth rate ( λ ) from 1998 to 2019 was 1.199. The mean annual harvest rate in Kentucky from 2013 to 2019 was 5.1% and in Tennessee from 2014 to 2019 was 13.2%. Based on simulations, the hunting seasons reduced mean λ from 1.217 to 1.199, but growth was rapid despite harvest. Genetic diversity was retained, with similar expected heterozygosity as in the source population. The lack of conspecifics, highly productive habitat, and an initial age and sex distribution that was skewed toward the most fecund members of the population likely contributed to the rapid growth and high levels of gene retention in this bear population.

Kentucky, Tennessee↗

USGS2009

Sources and transformations of nitrate from streams draining varying land uses: Evidence from dual isotope analysis

Knowledge of key sources and biogeochemical processes that affect the transport of nitrate (NO 3 - ) in streams can inform watershed management strategies for controlling downstream eutrophication. We applied dual isotope analysis of NO 3 - to determine the dominant sources and processes that affect NO 3 - concentrations in six stream/river watersheds of different land uses. Samples were collected monthly at a range of flow conditions for 15 mo during 2004-05 and analyzed for NO 3 - concentrations, ?? 15 N NO3 , and ?? 18 O NO3 . Samples from two forested watersheds indicated that NO 3 - derived from nitrification was dominant at baseflow. A watershed dominated by suburban land use had three ?? 18 O NO3 values greater than +25???, indicating a large direct contribution of atmospheric NO 3 - transported to the stream during some high flows. Two watersheds with large proportions of agricultural land use had many ?? 15 N NO3 values greater than +9???, suggesting an animal waste source consistent with regional dairy farming practices. These data showed a linear seasonal pattern with a ?? 18 O NO3 :?? 15 N NO3 of 1:2, consistent with seasonally varying denitrification that peaked in late summer to early fall with the warmest temperatures and lowest annual streamflow. The large range of ?? 15 N NO3 values (10???) indicates that NO 3 - supply was likely not limiting the rate of denitrification, consistent with ground water and/or in-stream denitrification. Mixing of two or more distinct sources may have affected the seasonal isotope patterns observed in these two agricultural streams. In a mixed land use watershed of large drainage area, none of the source and process patterns observed in the small streams were evident. These results emphasize that observations at watersheds of a few to a few hundred km 2 may be necessary to adequately quantify the relative roles of various NO 3 - transport and process patterns that contribute to streamflow in large basins. Copyright ?? 2009 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Journal of Environmental Quality↗

USGS1972

Red fox spatial characteristics in relation to waterfowl predation

Radio-equipped red foxes ( Vulpes vulpes ) on the Cedar Creek area in Minnesota were spatially distributed, with individual families occupying well defined, nonoverlapping, contiguous territories. Territory boundaries often conformed to natural physical boundaries and appeared to be maintained through some nonaggressive behavior mechanism. Individual foxes traveled extensively throughout the family territory each night. Fox territories appeared to range from approximately 1 to 3 square miles in size, dependent largely on population density. Red foxes used a sequence of dens to rear their pups, and the amount and location of food remains at individual dens changed as the pups matured. The denning season was divided into pre-emergence, confined-use, and dispersed-use periods of 4 to 5 weeks each. Remains of adult waterfowl were collected at rearing dens on six townships in three ecologically different regions of eastern North Dakota. Remains of 172 adult dabbling ducks and 16 adult American coots (Fulica americana) were found at 35 dens. No remains from diving ducks were found. The number of adult ducks per den averaged 1.6, 5.9, and 10.2 for paired townships in regions with relatively low, moderate and high duck populations, respectively. Eighty-four percent of the ducks were females. The species and sex composition of ducks found at dens during early and late sampling periods reflected the nesting chronology of prairie dabbling ducks. Occupied rearing dens were focal points of red fox travel, and the locations of dens may have had considerable influence on predation. Thirty-five of 38 dens found on the six township study areas were on pastured or idle lands. The distribution of rearing dens on the Sand Lake and Arrowwood national wildlife refuges suggested that, on these areas, fox dens were concentrated because of the topography and land-use practices.

Minnesota↗

USGS2015

Movements of radio-marked California Ridgway's rails during monitoring surveys: Implications for population monitoring

The California Ridgway's rail Rallus obsoletus obsoletus (hereafter California rail) is a secretive marsh bird endemic to tidal marshes in the San Francisco Bay (hereafter bay) of California. The California rail has undergone significant range contraction and population declines due to a variety of factors, including predation and the degradation and loss of habitat. Call-count surveys, which include call playbacks, based on the standardized North American marsh bird monitoring protocol have been conducted throughout the bay since 2005 to monitor population size and distribution of the California rail. However, call-count surveys are difficult to evaluate for efficacy or accuracy. To measure the accuracy of call-count surveys and investigate whether radio-marked California rails moved in response to call-count surveys, we compared locations of radio-marked California rails collected at frequent intervals (15 min) to California rail detections recorded during call-count surveys conducted over the same time periods. Overall, 60% of radio-marked California rails within 200 m of observers were not detected during call-count surveys. Movements of radio-marked California rails showed no directional bias ( P = 0.92) irrespective of whether or not playbacks of five marsh bird species (including the California rail) were broadcast from listening stations. Our findings suggest that playbacks of rail vocalizations do not consistently influence California rail movements during surveys. However, call-count surveys may underestimate California rail presence; therefore, caution should be used when relating raw numbers of call-count detections to population abundance.

Journal of Fish and Wildlife Management↗

USGS2017

Greater sage-grouse population trends across Wyoming

The scale at which analyses are performed can have an effect on model results and often one scale does not accurately describe the ecological phenomena of interest (e.g., population trends) for wide-ranging species: yet, most ecological studies are performed at a single, arbitrary scale. To best determine local and regional trends for greater sage-grouse ( Centrocercus urophasianus ) in Wyoming, USA, we modeled density-independent and -dependent population growth across multiple spatial scales relevant to management and conservation (Core Areas [habitat encompassing approximately 83% of the sage-grouse population on ∼24% of surface area in Wyoming], local Working Groups [7 regional areas for which groups of local experts are tasked with implementing Wyoming's statewide sage-grouse conservation plan at the local level], Core Area status (Core Area vs. Non-Core Area) by Working Groups, and Core Areas by Working Groups). Our goal was to determine the influence of fine-scale population trends (Core Areas) on larger-scale populations (Working Group Areas). We modeled the natural log of change in population size ( peak M lek counts) by time to calculate the finite rate of population growth ( λ ) for each population of interest from 1993 to 2015. We found that in general when Core Area status (Core Area vs. Non-Core Area) was investigated by Working Group Area, the 2 populations trended similarly and agreed with the overall trend of the Working Group Area. However, at the finer scale where Core Areas were analyzed separately, Core Areas within the same Working Group Area often trended differently and a few large Core Areas could influence the overall Working Group Area trend and mask trends occurring in smaller Core Areas. Relatively close fine-scale populations of sage-grouse can trend differently, indicating that large-scale trends may not accurately depict what is occurring across the landscape (e.g., local effects of gas and oil fields may be masked by increasing larger populations).

Wyoming↗

USGS2001

Asian dust events of April 1998

On April 15 and 19, 1998, two intense dust storms were generated over the Gobi desert by springtime low-pressure systems descending from the northwest. The windblown dust was detected and its evolution followed by its yellow color on SeaWiFS satellite images, routine surface-based monitoring, and through serendipitous observations. The April 15 dust cloud was recirculating, and it was removed by a precipitating weather system over east Asia. The April 19 dust cloud crossed the Pacific Ocean in 5 days, subsided to the surface along the mountain ranges between British Columbia and California, and impacted severely the optical and the concentration environments of the region. In east Asia the dust clouds increased the albedo over the cloudless ocean and land by up to 10–20%, but it reduced the near-UV cloud reflectance, causing a yellow coloration of all surfaces. The yellow colored backscattering by the dust eludes a plausible explanation using simple Mie theory with constant refractive index. Over the West Coast the dust layer has increased the spectrally uniform optical depth to about 0.4, reduced the direct solar radiation by 30–40%, doubled the diffuse radiation, and caused a whitish discoloration of the blue sky. On April 29 the average excess surface-level dust aerosol concentration over the valleys of the West Coast was about 20–50 μg/m 3 with local peaks >100 μg/m 3 . The dust mass mean diameter was 2–3 μm, and the dust chemical fingerprints were evident throughout the West Coast and extended to Minnesota. The April 1998 dust event has impacted the surface aerosol concentration 2–4 times more than any other dust event since 1988. The dust events were observed and interpreted by an ad hoc international web-based virtual community. It would be useful to set up a community-supported web-based infrastructure to monitor the global aerosol pattern for such extreme aerosol events, to alert and to inform the interested communities, and to facilitate collaborative analysis for improved air quality and disaster management.

Journal of Geophysical Research D: Atmospheres↗

USGS2019

Annual winter site fidelity of Barrow's goldeneyes in the Pacific

Coastal regions on the Pacific north coast of North America provide important wintering habitat for many species of sea ducks. Although winter range and habitat preferences are well described for most species, fidelity to coastal wintering sites is generally undocumented. Fidelity is an important factor necessary for understanding interactions with coastal developments and activities and corresponding management strategies. We used data from Barrow's goldeneyes (Bucephala islandica), a sea duck that winters predominantly in nearshore habitats along the Pacific north coast, to investigate inter‐annual fidelity to, and intra‐annual fidelity within, coastal wintering sites. Between 2006 and 2015, we marked goldeneyes on breeding, molting, and wintering sites with satellite transmitters. We retained 4,931 locations in coastal habitats from 221 goldeneyes across 4 coastal regions for our analyses. These birds demonstrated high inter‐annual fidelity to coastal wintering sites; 75% of selected wintering sites were within 29 km of sites used the previous winter. Inter‐annual fidelity to wintering sites was similar between sex and age classes but differed by coastal region. Goldeneyes from southcentral Alaska, USA, expressed greater inter‐annual fidelity relative to birds from northern or southern British Columbia, Canada, and southeast Alaska. Goldeneyes also expressed high intra‐annual fidelity within wintering sites, with 75% of individuals averaging within‐season movements of ≤9 km. Intra‐annual fidelity was lesser for female than male goldeneyes but did not differ between hatch‐year and after‐hatch‐year birds. We found regional variation in intra‐annual fidelity, with goldeneyes from southcentral Alaska expressing greater intra‐annual fidelity compared to birds from other regions. High inter‐ and intra‐annual winter site fidelity by Barrow's goldeneyes suggests that, at a population level, habitat use is predictable and can be used to inform risk assessment or to evaluate factors affecting habitat choice. Also, low dispersal among wintering sites suggests that recovery from population perturbations, whether caused by natural or anthropogenic events, will be protracted.

Pacific north coast↗

USGS2022

Cause of death, pathology, and chronic wasting disease status of white-tailed deer (Odocoileus virginianus) mortalities in Wisconsin

White-tailed deer (WTD; Odocoileus virginianus ) are a critical species for ecosystem function and wildlife management. As such, studies of cause-specific mortality among WTD have long been used to understand population dynamics. However, detailed pathological information is rarely documented for free-ranging WTD, especially in regions with a high prevalence of chronic wasting disease (CWD). This leaves a significant gap in understanding how CWD is associated with disease processes or comorbidities which may subsequently alter broader population dynamics. In this study, we investigated unknown mortalities among collared WTD in southwestern Wisconsin, an area of high CWD prevalence. We tested for associations between CWD and other disease processes and used a network approach to test for co-occurring disease processes. Predation and infectious disease were top suspected causes of death, with high prevalence of CWD (42.4%; of 245 evaluated) and pneumonia (51.2%; of 168 evaluated) in our sample. CWD prevalence increased with age, before decreasing among older individuals, with more older females than males in our sample. Females were more likely to be CWD positive, and while this was not statistically significant when accounting for age, females were significantly more likely to die with end-stage CWD than were males and may consequently be an underrecognized source of CWD transmission. Presence of CWD was associated with emaciation, atrophy of marrow fat and hematopoietic cells, and ectoparasitism (i.e., lice, ticks). Occurrences of severe infectious disease pathologies clustered together (e.g., pneumonia, CWD), as compared to non-infectious or low severity processes (e.g., sarcocystosis). However, pneumonia cases were not fully explained by CWD status. With the prevalence of CWD increasing across North America, our results highlight the critical importance of understanding the potential role of CWD in favoring or maintaining disease processes of importance for deer population health and dynamics.

Wisconsin↗

USGS2016

Response of imperiled Okaloosa darters to stream restoration

The Okaloosa Darter Etheostoma okaloosae is a small percid endemic to six stream drainages in northwestern Florida. The U.S. Fish and Wildlife Service listed Okaloosa Darters as endangered in 1973 and downlisted them to threatened in 2011 because of habitat improvements and increasing abundance across much of their geographic range. Delisting is possible if remaining recovery criteria are met, including restoration of degraded stream reaches. Impounded reaches of Anderson Branch, Mill Creek, and Toms Creek were restored by removing impediments to water ﬂow, draining impoundments, and reconstructing stream reaches. Restorations of Anderson Branch and Mill Creek were designed to rehabilitate populations of Okaloosa Darters without signiﬁcantly affecting popular recreational activities at these locations. Restorations were evaluated from 2007 to 2013 by comparing counts of Okaloosa Darters and the composition of microhabitats in restored and nearby undisturbed reference sites. Okaloosa Darters were absent from degraded stream reaches at the beginning of the study, but they rapidly colonized once restorations were completed. Counts of Okaloosa Darters in reference and restoration sites in Anderson Branch were similar by the end of the study, whereas counts in restoration sites were signiﬁcantly lower than nearby reference sites in Mill and Toms creeks. Restoration sites tended to have lower coverage of sand and root and higher coverage of macrophytes. As riparian vegetation surrounding restoration sites matures to a closed canopy that reduces excessive growth of macrophytes, stream microhabitats and numbers of darters will probably become similar to reference sites. Restoration of degraded stream sites increased abundance and distribution of Okaloosa Darters and reconnected formerly isolated upstream and downstream populations. These projects demonstrated that restoration is a useful conservation tool for imperiled ﬁshes such as Okaloosa Darters and can be undertaken without interfering with popular recreational activities.

Florida↗

USGS2016

An evaluation of methods for estimating decadal stream loads

Effective management of water resources requires accurate information on the mass, or load of water-quality constituents transported from upstream watersheds to downstream receiving waters. Despite this need, no single method has been shown to consistently provide accurate load estimates among different water-quality constituents, sampling sites, and sampling regimes. We evaluate the accuracy of several load estimation methods across a broad range of sampling and environmental conditions. This analysis uses random sub-samples drawn from temporally-dense data sets of total nitrogen, total phosphorus, nitrate, and suspended-sediment concentration, and includes measurements of specific conductance which was used as a surrogate for dissolved solids concentration. Methods considered include linear interpolation and ratio estimators, regression-based methods historically employed by the U.S. Geological Survey, and newer flexible techniques including Weighted Regressions on Time, Season, and Discharge (WRTDS) and a generalized non-linear additive model. No single method is identified to have the greatest accuracy across all constituents, sites, and sampling scenarios. Most methods provide accurate estimates of specific conductance (used as a surrogate for total dissolved solids or specific major ions) and total nitrogen – lower accuracy is observed for the estimation of nitrate, total phosphorus and suspended sediment loads. Methods that allow for flexibility in the relation between concentration and flow conditions, specifically Beale’s ratio estimator and WRTDS, exhibit greater estimation accuracy and lower bias. Evaluation of methods across simulated sampling scenarios indicate that (1) high-flow sampling is necessary to produce accurate load estimates, (2) extrapolation of sample data through time or across more extreme flow conditions reduces load estimate accuracy, and (3) WRTDS and methods that use a Kalman filter or smoothing to correct for departures between individual modeled and observed values benefit most from more frequent water-quality sampling.

Journal of Hydrology↗

USGS2021

OpenET: Filling a critical data gap in water management for the western United States

The lack of consistent, accurate information on evapotranspiration (ET) and consumptive use of water by irrigated agriculture is one of the most important data gaps for water managers in the western United States (U.S.) and other arid agricultural regions globally. The ability to easily access information on ET is central to improving water budgets across the West, advancing the use of data-driven irrigation management strategies, and expanding incentive-driven conservation programs. Recent advances in remote sensing of ET have led to the development of multiple approaches for field-scale ET mapping that have been used for local and regional water resource management applications by U.S. state and federal agencies. The OpenET project is a community-driven effort that is building upon these advances to develop an operational system for generating and distributing ET data at a field scale using an ensemble of six well-established satellite-based approaches for mapping ET. Key objectives of OpenET include: Increasing access to remotely sensed ET data through a web-based data explorer and data services; supporting the use of ET data for a range of water resource management applications; and development of use cases and training resources for agricultural producers and water resource managers. Here we describe the OpenET framework, including the models used in the ensemble, the satellite, meteorological, and ancillary data inputs to the system, and the OpenET data visualization and access tools. We also summarize an extensive intercomparison and accuracy assessment conducted using ground measurements of ET from 139 flux tower sites instrumented with open path eddy covariance systems. Results calculated for 24 cropland sites from Phase I of the intercomparison and accuracy assessment demonstrate strong agreement between the satellite-driven ET models and the flux tower ET data. For the six models that have been evaluated to date (ALEXI/DisALEXI, eeMETRIC, geeSEBAL, PT-JPL, SIMS, and SSEBop) and the ensemble mean, the weighted average mean absolute error (MAE) values across all sites range from 13.6 to 21.6 mm/month at a monthly timestep, and 0.74 to 1.07 mm/day at a daily timestep. At seasonal time scales, for all but one of the models the weighted mean total ET is within ±8% of both the ensemble mean and the weighted mean total ET calculated from the flux tower data. Overall, the ensemble mean performs as well as any individual model across nearly all accuracy statistics for croplands, though some individual models may perform better for specific sites and regions. We conclude with three brief use cases to illustrate current applications and benefits of increased access to ET data, and discuss key lessons learned from the development of OpenET.

western United States↗