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USGS2025

Quantifying sea otter abundance, distribution, habitat use, and foraging intake in Cook Inlet, Alaska

Following near extirpation from the fur trade, sea otters ( Enhydra lutris ) have returned to occupy lower Cook Inlet since the 1950s, or earlier, with numbers increasing to ~11,000 and ~9,000 on the west and east side, respectively, by 2017. Northward range expansion on the west side has been negligible for decades with few animals found north of Kamishak Bay, while northward expansion on the east side has been more pronounced in recent decades. The reasons for these contrasting distribution patterns are not certain. Possible explanations for lack of expansion on the west side included 1) poor sea otter habitat north of Kamishak Bay; 2) adequate habitat north of Kamishak Bay but no incentive for sea otters to move north because of abundant food in Kamishak Bay, and/or sea otters discouraged from moving north of Kamishak Bay; 3) seasonal ice formation; or 4) seasonal presence of killer whales. This project was designed to document current sea otter abundance and distribution in lower Cook Inlet, including seasonal variation, and evaluate drivers of habitat use and foraging conditions, including how these overlap with Bureau of Ocean Energy Management (BOEM) Lease Sale blocks. We found that the probability of sea otter presence in lower Cook Inlet was significantly related to depth and distance from shore with the highest probabilities of sea otter presence in areas ~7–8 kilometers (km) from shore in water ~20–30 meters (m) deep. Historical survey data suggest sea otter distribution has not changed dramatically since 2002, and while we detected significant seasonal changes including due to presence of heavy sea ice, the seasonal changes were modest and primarily related to locations with consistent winter ice formation on the west side of lower Cook Inlet. Overall, throughout the year, sea otters appeared to be utilizing most of the habitat within the 40-m depth contour on the east side of lower Cook Inlet, including Kachemak Bay. Sea otters on the west side reside largely within Kamishak Bay. Because of the shallow bathymetry of lower Cook Inlet, sea otters consistently occurred farther offshore than in many other areas of Alaska. The presence of sea otters, including females with pups, in these offshore waters indicates that sea otters can forage productively in these open water areas. Importantly, we documented that sea otters, including females with pups, occurred in most of the eastern BOEM lease blocks including the original Lease Sale 244 blocks 7064, 7114, 6162, 6310, 6360, 6410, 6458 and 6457. The relinquishments for these 7 leases were effective September 17, 2024: OCS-Y-02434 (block # 7064), OCS-Y-02435 (7114), OCS-Y-02436 (6162), OCS-Y-02438 (6357), OCS-Y-02442 (6407), OCS-Y02446 (6457), OCS-Y-02447 (6458) https://www.boem.gov/sites/default/files/documents/environment/Map%20of%20Active%20Leases%20 Cook%20Inlet%20OCS_0.pdf Regarding differential northward expansion on the east and west side of lower Cook Inlet, we found that wind and water circulation patterns make winter sea ice more prominent on the west side, but this had minimal effects on sea otter distribution. In addition, although there have been observations of killer whale ( Orcinus orca ) predation on sea otters in Cook Inlet, we did not see behavioral or distributional evidence that it was prevalent enough to have strong effects on sea otter habitat use. Benthic surveys using a remotely operated vehicle (ROV) indicated that epibenthic substrate and biological community heterogeneity differed between areas with and without otters, suggesting that these factors may explain the current distribution of otters within lower Cook Inlet. However, ROV surveys cannot assess infaunal prey abundance, making assessments of the role of prey availability difficult. The existence of a healthy Pacific razor clam ( Siliqua patula ) fishery along western lower Cook Inlet along the Lake Clark coast north of Kamishak Bay suggests there may still be a resource base for eventual expansion of sea otters into this area. Our shore-based forage observations indicated that sea otters exist near carrying capacity densities relative to nearshore prey resources. However, our distribution model suggests the bulk of the population lives offshore beyond our ability to observe their feeding activity. The fact that sea otters are a consistent presence in offshore areas suggests that prey resources in these areas were relatively abundant in comparison to nearshore prey resources, making foraging in offshore areas, with water depths of 0–40 m, energetically profitable. Prey types in these offshore areas of lower Cook Inlet likely included epifauna such as crabs and large urchins, in addition to infaunal clams based on the soft substrate habitat types that characterize lower Cook Inlet. Collectively, our results suggest that sea otters occupy most areas of lower Cook Inlet with appropriate benthic habitat types and prey resources, which includes areas within BOEM Lease Sale blocks. With the exception of the Lake Clark coast, sea otters may be approaching a food- and habitat-limited distribution and carrying capacity, suggesting that the current status of sea otters in lower Cook Inlet is likely to remain similar in the absence of significant changes to prey, habitat, predation, or anthropogenic disturbance.

Alaska↗

USGS2007

Proceedings of the Fourth Glacier Bay Science Symposium

Foreword Glacier Bay was established as a National Monument in 1925, in part to protect its unique character and natural beauty, but also to create a natural laboratory to examine evolution of the glacial landscape. Today, Glacier Bay National Park and Preserve is still a place of profound natural beauty and dynamic landscapes. It also remains a focal point for scientific research and includes continuing observations begun decades ago of glacial processes and terrestrial ecosystems. In recent years, research has focused on glacial-marine interactions and ecosystem processes that occur below the surface of the bay. In October 2004, Glacier Bay National Park convened the fourth in a series of science symposiums to provide an opportunity for researchers, managers, interpreters, educators, students and the general public to share knowledge about Glacier Bay. The Fourth Glacier Bay Science Symposium was held in Juneau, Alaska, rather than at the Park, reflecting a desire to maximize attendance and communication among a growing and diverse number of stakeholders interested in science in the park. More than 400 people attended the symposium. Participants provided 46 oral presentations and 41 posters covering a wide array of disciplines including geology, glaciology, oceanography, wildlife and fisheries biology, terrestrial and marine ecology, socio-cultural research and management issues. A panel discussion focused on the importance of connectivity in Glacier Bay research, and keynote speakers (Gary Davis and Terry Chapin) spoke of long-term monitoring and ecological processes. These proceedings include 56 papers from the symposium. A summary of the Glacier Bay Science Plan-itself a subject of a meeting during the symposium and the result of ongoing discussions between scientists and resource managers-also is provided. We hope these proceedings illustrate the diversity of completed and ongoing scientific studies, conducted within the Park. To this end, we invited all presenters to submit brief technical summaries of their work, to capture the gist of their study and its main findings without an overload of details and methodology. We also asked authors to include a few words on the management implications of their work to help bridge the gap between scientists and managers in understanding how specific research questions may translate to management practice. Papers in this volume are laid out by subject matter, from terrestrial and freshwater subjects to glacial-marine geology, to the ecology of marine animals and ending with risk assessment, human impacts and science-management considerations. In summary, we hope the proceedings will serve as a useful reference to completed and ongoing studies in Glacier Bay National Park, and thereby provide park enthusiasts, scientists, and managers with a road map of scientific progress.

Scientific Investigations Report↗

USGS1987

Limnological and fishery studies on Lake Sharpe, a main-stem Missouri River reservoir

Lake Sharpe, the most recent of six main-stem Missouri River reservoirs to be impounded, began to fill in November 1963 and became fully operational in July 1966. At full pool it is 137 km long, and has a surface area of 22,600 ha and a volume of 2.34 km". It is operated as a flow-through power generation system that reregulates discharges from upstream Lake Oahe. Major changes in the water-management regimen during 1966-75 were increased summer discharges beginning in 1969 and increased peaking operations beginning in 1973. Lake Sharpe had a relatively short aging process because it filled rapidly, the water level remained relatively stable, and the waterexchange rate was high. Consequently, most physical, chemical, and biological characteristics were remarkably uniform during 1966–75. The temperature regimen was largely governed by inflow from Lake Oahe. Although the water mass warmed during summer, thermal stratification was generally transient, limited to the lower reservoir, and more common during periods of relatively low discharge rates in 1966–68 than in later years. Variation in turbidity was striking; the midsection of the reservoir was generally most turbid. Chemical ion composition of the water tended to be uniform; observed differences were localized and associated with tributary inflows. Phytoplankton abundance reached its highest levels during 1970–75. Composition of the zooplankton community changed during 1966–75; the abundance of cyclopoid copepods decreased and that of calanoid copepods and cladocerans increased. Total abundance varied during the 10-year period, but without apparent trend. Variation in abundance appeared to be associated with discharge rate, water temperature, and turbidity. The benthic community in 1967-68 consisted mostly of chironomid larvae, which were uniformly distributed over the length of the reservoir.

South Dakota↗

USGS2018

Incorporating an approach to aid river and reservoir fisheries in an altered landscape

Reservoir construction for human-use services alters connected riverine flow patterns and influences fish production. We sampled two pelagic fishes from two rivers and two reservoirs and related seasonal and annual hydrology patterns to the recruitment and growth of each species. River and reservoir populations of Freshwater Drum Aplodinotus grunniens reached similar ages (32 and 31, respectively). Likewise, longevity of Gizzard Shad Dorosoma cepedianum between the two systems was also similar (7 and 8 years, respectively). However, both species grew larger in the rivers compared to reservoir residents. Recruitment of Freshwater Drum in reservoirs was negatively related to water retention time (r2=0.59) suggesting moving water through the reservoir was beneficial. Riverine recruitment of Freshwater Drum populations was negatively related to the annual number of flow reversals and positively related to prespawn discharge (r2 = 0.33). Unlike Freshwater Drum, there was no relationship between flow metrics and Gizzard Shad recruitment in reservoirs. However, recruitment of riverine Gizzard Shad was positively related to high flow pulses during the prespawn and spawning seasons (r2 = 0.48). The growth of both species in reservoirs was positively related to the number of days each year that water levels were above the conservation pool. Growth of Freshwater Drum was also negatively related to minimum reservoir summer water levels (r2 = 0.84). Growth of both Freshwater Drum and Gizzard Shad occupying lotic systems was positively related to May (r2 = 0.86) and July discharge (r2 = 0.84), respectively. In general, growth and recruitment of the reservoir populations was more related to annual water patterns, whereas riverine fishes responded more to seasonal flow patterns. Results of this study provide important information on the relationship between hydrology and pelagic fish production in both rivers and reservoirs. This information is useful if agencies are interested in developing holistic river-reservoir water-allocation plans.

Cooperator Science Series↗

USGS2025

Predation of Lost River and Shortnose suckers by piscivorous colonial waterbirds in the Upper Klamath Basin: An analysis of predation effects during 2021–2023

Previously published research indicated that predation by piscivorous colonial waterbirds in the Upper Klamath Basin was a source of mortality for Lost River suckers ( Deltistes luxatus ) and Shortnose suckers ( Chasmistes brevirostris ), including mortality of Sucker Assisted Rearing Program (SARP) fish. Avian predation on recently released Chinook Salmon ( Oncorhynchus tshawytscha ) in the Upper Klamath Basin has not been studied. To provide fisheries managers with the most up-to-date information, we estimated predation rates on passive integrated transponder tagged (PIT) suckers and Chinook Salmon by breeding colonies of American White Pelicans ( Pelecanus erythrorhynchos ), Double-crested Cormorants ( Nannopterum auritum ), Caspian Terns ( Hydroprogne caspia ), California Gulls ( Larus californicus ), Ring-billed Gulls ( L. delawarensis ), Great Blue Herons ( Ardea herodias ), and Great Egrets ( A. alba ) during 2021–2023. Predation rate estimates were variable depending on the fish species, age-class (juvenile, adult), waterbody (Upper Klamath Lake, Clear Lake Reservoir, Sheepy Lake), and year. Results indicated that avian predation rates were highest on juvenile suckers and on suckers in Clear Lake Reservoir. SARP fish released in the spring/summer were more likely to be consumed by breeding birds than those released in the fall/winter, although the number of fish released in the fall/winter that survived to the spring/summer was unknown and could bias predation estimates low. Predation rate estimates on Chinook Salmon varied by year, release timing (spring/summer, fall/winter), release location (Upper Klamath Lake, Klamath River), and age-class (subyearling, yearling). The location and size of colonies were also highly variable depending on the bird species, colony location, and year. Future research could focus on identifying biotic and abiotic factors associated with sucker susceptibility to piscivorous colonial waterbirds and determining to what degree avian predation limits the recovery of suckers in the Upper Klamath Basin.

California, Oregon↗

USGS2010

Population viability of Arctic grayling in the Gibbon River, Yellowstone National Park

The fluvial Arctic grayling Thymallus arcticus is restricted to less than 5% of its native range in the contiguous United States and was relisted as a category 3 candidate species under the U.S. Endangered Species Act in 2010. Although fluvial Arctic grayling of the lower Gibbon River, Yellowstone National Park, Wyoming, were considered to have been extirpated by 1935, anglers and biologists have continued to report catching low numbers of Arctic grayling in the river. Our goal was to determine whether a viable population of fluvial Arctic grayling persisted in the Gibbon River or whether the fish caught in the river were downstream emigrants from lacustrine populations in headwater lakes. We addressed this goal by determining relative abundances, sources, and evidence for successful spawning of Arctic grayling in the Gibbon River. During 2005 and 2006, Arctic grayling comprised between 0% and 3% of the salmonid catch in riverwide electrofishing (mean < 1%; SE < 1%) and snorkeling (mean = 1%; SE = 1%) surveys; Arctic grayling constituted 0–14% of the salmonid catch obtained by targeted angling (3 of 22 fish; mean = 4%; SE = 5%). Low values of the genetic differentiation index ( F ST = 0.0021 ± 0.002 [mean ± 95% confidence interval]) between headwater lake and river Arctic grayling indicated that fish from throughout the Gibbon River system probably belonged to the same population. Back-calculated lengths at most ages were similar among all fish, and successful spawning within the Gibbon River below the headwater lakes was not documented. Few Arctic grayling adults and no fry were detected in the Gibbon River, implying that a reproducing fluvial population does not exist there. These findings have implications for future Endangered Species Act considerations and management of fluvial Arctic grayling within and outside of Yellowstone National Park. Our comprehensive approach is broadly applicable to the management of sparsely detected aquatic species worldwide.

Wyoming↗

USGS2018

U.S. Caribbean

Historically, the U.S. Caribbean region has experienced relatively stable seasonal rainfall patterns, moderate annual temperature fluctuations, and a variety of extreme weather events, such as tropical storms, hurricanes, and drought. However, the Caribbean climate is changing and is projected to be increasingly variable as levels of greenhouse gases in the atmosphere increase. The high percentage of coastal area relative to the total island land area in the U.S. Caribbean means that a large proportion of the region’s people, infrastructure, and economic activity are vulnerable to sea level rise, more frequent intense rainfall events and associated coastal flooding, and saltwater intrusion. High levels of exposure and sensitivity to risk in the U.S. Caribbean region are compounded by a low level of adaptive capacity, due in part to the high costs of mitigation and adaptation measures relative to the region’s gross domestic product, particularly when compared to continental U.S. coastal areas. The limited geographic and economic scale of Caribbean islands means that disruptions from extreme climate-related events, such as droughts and hurricanes, can devastate large portions of local economies and cause widespread damage to crops, water supplies, infrastructure, and other critical resources and services. The U.S. Caribbean territories of Puerto Rico and the U.S. Virgin Islands (USVI) have distinct differences in topography, language, population size, governance, natural and human resources, and economic capacity. However, both are highly dependent on natural and built coastal assets; service-related industries account for more than 60% of the USVI economy. Beaches, affected by sea level rise and erosion, are among the main tourist attractions. In Puerto Rico, critical infrastructure (for example, drinking water pipelines and pump stations, sanitary pipelines and pump stations, wastewater treatment plants, and power plants) is vulnerable to the effects of sea level rise, storm surge , and flooding. In the USVI, infrastructure and historical buildings in the inundation zone for sea level rise include the power plants on both St. Thomas and St. Croix; schools; housing communities; the towns of Charlotte Amalie, Christiansted, and Frederiksted; and pipelines for water and sewage. Climate change will likely result in water shortages due to an overall decrease in annual rainfall, a reduction in ecosystem services, and increased risks for agriculture, human health, wildlife, and socioeconomic development in the U.S. Caribbean. These shortages would result from some locations within the Caribbean experiencing longer dry seasons and shorter, but wetter, wet seasons in the future. Extended dry seasons are projected to increase fire likelihood. Excessive rainfall, coupled with poor construction practices, unpaved roads, and steep slopes, can exacerbate erosion rates and have adverse effects on reservoir capacity, water quality, and nearshore marine habitats. Ocean warming poses a significant threat to the survival of corals and will likely also cause shifts in associated habitats that compose the coral reef ecosystem . Severe, repeated, or prolonged periods of high temperatures leading to extended coral bleaching can result in colony death. Ocean acidification also is likely to diminish the structural integrity of coral habitats. Studies show that major shifts in fisheries distribution and changes to the structure and composition of marine habitats adversely affect food security, shoreline protection, and economies throughout the Caribbean. In Puerto Rico, the annual number of days with temperatures above 90°F has increased over the last four and a half decades. During that period, stroke and cardiovascular disease, which are influenced by such elevated temperatures, became the primary causes of death. Increases in average temperature and in extreme heat events will likely have detrimental effects on agricultural operations throughout the U.S. Caribbean region. Many farmers in the tropics, including the U.S. Caribbean, are considered small-holding, limited resource farmers and often lack the resources and/or capital to adapt to changing conditions. Most Caribbean countries and territories share the need to assess risks, enable actions across scales, and assess changes in ecosystems to inform decision-making on habitat protection under a changing climate. U.S. Caribbean islands have the potential to improve adaptation and mitigation actions by fostering stronger collaborations with Caribbean initiatives on climate change and disaster risk reduction.

Report↗

USGS2020

Effects of density reduction on age-specific growth of stream-dwelling Brown Trout

Density-dependent growth has been well documented among stream-dwelling Brown Trout Salmo trutta populations. In Spearfish Creek, South Dakota, biomass of adult Brown Trout (>200 mm) is about three times greater than that reported for similar Black Hills streams, whereas the mean length of adult fish is about 30% less. Here, we evaluate density reduction as a management tool for improving the growth rate of stream-dwelling Brown Trout. We compared age-specific growth of wild Brown Trout in stream sections receiving 50% reductions in fish abundance (removal sections) to that of fish in sections containing natural densities (control sections). Annual growth in length and weight of older Brown Trout (age > 2) was greater in removal sections compared to control sections, particularly among fish between 230 and 280 mm TL (ages 3–4). We attribute the growth response to constraints imposed by food availability and the strong feeding hierarchies, characteristic of larger (older) Brown Trout. Data collected from PIT-tagged fish that were recaptured 2 years after fish removal efforts revealed that growth responses owing to density reduction likely did not extend beyond 1 year. Nonetheless, among cohorts that showed improved growth after the first year, we found that their growth advantage was sustained into the second year. At removal sections, age-3 and older Brown Trout that experienced greater growth after 1 year were larger than fish from control sections 2 years later at age 5 and older. Identification of cohort(s) for which density-dependent growth is most pronounced could help to focus efforts on targeted reduction of specific fish sizes/ages that minimize the cost–benefit ratio of fish removal efforts.

South Dakota↗

USGS2025

USGS—An Unparalleled Scientific Asset

The U.S. Geological Survey (USGS) delivers information critical to powering our economy, managing our natural resources, and keeping Americans safe and healthy. 1 Mapping the Nation $21B Geologic maps save users an estimated 15% in annual costs: a value of between $14B and $21B. $25.6B in annual value to users of imagery from Landsat satellites, which were codeveloped by NASA and the USGS and operated through their lifespans by the USGS. $13.5B in annual benefits is generated by the USGS's 3D Elevation Program. Securing America’s Energy Independence 44% USGS-identified undiscovered geothermal energy is equal to 44% of current U.S. electricity generation. 29.4B barrels of oil and 391.6 trillion cubic feet of gas in recoverable resources are available on U.S. public lands based on USGS assessments. Protecting Americans’ Health and Safety $424B in recent wildland fire damages highlight the need for USGS fire science, which supports efforts to protect communities and reduce risk. USGS earthquake, volcano, landslide, and coastal hazard monitoring and information save lives and minimize costs; for example, $2.8M can be saved because of USGS enhanced information about a Mauna Loa eruption. $4.5B is the estimated cost of annual flooding. Through a network of over 11,885 streamgages, the USGS supports public safety and enables forecasts, early warning systems, and management actions that protect lives and property. Supporting National Security $3.1B The USGS identified a $3.1B risk to the American economy if China restricts gallium imports. This is one example underscoring the importance of the USGS mapping critical minerals, investigating supply chains, and producing the Nation’s critical minerals list. Enhancing Our Lands and Waters $21B in estimated annual costs results from invasive species. The USGS’s invasive species research informs approaches used to reduce their effects on agriculture, water infrastructure, disease transmission, fisheries, and outdoor recreation. USGS innovations support early warnings for harmful algal blooms—over $2M in yearly benefits are provided to Kansas alone. $45B USGS science informs the management of big game (such as deer and elk). The big-game hunting industry contributes $45B to the U.S. economy. Fostering American Prosperity $4.1T Mineral commodities are necessary for the $4.1T in value added to the GDP by major industries that consume processed mineral materials and employ 1 million workers. Because of this, USGS data on mineral supply, demand, and trade are highly valued. 45,000 metric tons Rare earths power the growing technology economy, including cell phones, electric vehicles, and medical devices. For over 70 years, USGS work has supported the discovery of rare earth resources in California’s Mountain Pass area, which produced 45,000 metric tons of rare earth concentrates in 2024—over 11% of the global supply. Guarding American Food Security $70.2B USGS science informs early warning systems and management strategies to mitigate disease outbreaks in agriculture—critical research on highly pathogenic avian influenza, for example, helps safeguard the $70B value in poultry and egg production. $11.8B USGS groundwater tools are vital for agriculture; for example, in the Mississippi Alluvial Plain, 65% of farming relies on groundwater to support its $11.8B annual industry. 1 Values throughout are given in billions (B), millions (M), and trillions (T) of U.S. dollars. GDP is “Gross Domestic Product.” Percentages are shown as %.

General Information Product↗

USGS2026

Field performance evaluation of a bayluscide 20-percent suspension concentrate formulation

Petromyzon marinus (sea lamprey) is a parasitic, invasive fish of the Laurentian Great Lakes. Since the late 1950s, the Great Lakes Fishery Commission has implemented an integrated Sea Lamprey Control Program (SLCP) that relies on two lampricidal chemicals: 3-(trifluoromethyl)-4-nitrophenol (TFM) and niclosamide. Niclosamide is applied using a bayluscide 20-percent emulsifiable concentrate; however, a solvent in this formulation, N -methyl-2-pyrrolidone, has been linked with worker safety concerns and has contributed to equipment degradation and clogging. To address these limitations, the U.S. Geological Survey, in collaboration with Battelle UK, developed a bayluscide 20-percent suspension concentrate (SC) as a potential alternative formulation. In this study, we evaluated the field performance of SC on the Indian River in Schoolcraft County, Michigan. The objective was to assess the formulation’s compatibility with SLCP application procedures and equipment, and to determine its ability to deliver precise lampricide concentrations in a timely manner. SC was found to dilute easily with stream water and readily combined with TFM. As a result, target lampricide concentrations in the stream were achieved within 1 hour of initiating delivery. Moreover, concentrations remained within 9 percent of target values, with less than 2 percent variation across the width of the stream, demonstrating consistent and uniform distribution. These findings indicate that SC can support accurate and timely lampricide applications. When considered alongside previous research highlighting its favorable selectivity for sea lamprey and improved environmental safety, the results support the pursuit of registration and adoption of SC as a new tool for controlling invasive sea lamprey.

Michigan↗

USGS2023

Lake Ontario August gillnet survey and Lake Trout assessment, 2022

Lake Ontario Lake Trout (Salvelinus namaycush) rehabilitation has been annually assessed with fishery independent surveys since 1983, in an effort to evaluate program benchmarks and compare observations with management objectives. These surveys provide information on the abundance, strain composition, and condition of the adult Lake Trout stock, as well as information on levels of natural recruitment, Sea Lamprey (Petromyzon marinus) wounding rates, and abundance indices of other coldwater fish species (Burbot Lota lota, Cisco Coregonus artedi, and Lake Whitefish C. clupeaformis). In 2022, the catch per unit effort (CPUE) of total Lake Trout in gillnets remained high (18.9 fish/lift; highest since 1998) compared to lows observed during 2005–2009 (average = 7.5 fish/lift). The CPUE of immature Lake Trout in the 2022 survey was the highest since 1994. Wild-produced mature Lake Trout remain rare in the adult population (2.4% of adult catch). Strain composition of stocked fish indicated more than half (56%) of all coded-wire tagged Lake Trout captured in 2022 were from the Superior Klondike strain. Sea Lamprey wounding rates were above target levels in 2022 (3.15 A1 wounds per 100 Lake Trout) and were nearly double the 2021 rate. Lake Trout condition (predicted weight at length) was the highest since data collection began in 1983. Overall, the 2022 survey results indicate that adult Lake Trout are abundant and of high condition but composed mostly of hatchery-origin strains, suggesting recruitment of wild-produced offspring to the adult stock continues to be limited.

Lake Ontario↗

USGS2010

2009 Spawning cisco investigations in the Canadian waters of Lake Superior

We sampled with acoustics (AC) and midwater trawls (MT) to determine cisco abundance in Lake Superior’s Thunder and Black bays during 8-14 November, 2009. Total abundance of spawning-size (≥ 250 mm total length) ciscoes was estimated at 6.25 million in Thunder Bay and 1.12 million in Black Bay. Exploitation fractions of market-size (≥ age 6) females from Thunder and Black bays for 2009 were estimated at 7.1% and 11.3%, respectively; below the recommended maximum annual harvest of 15% recently adopted by Lake Superior fisheries managers. Given Thunder Bay spawner densities are on a downward trajectory, and recruitment since the 2003 year-class has been low, it is likely the exploitation fractions will increase in the future. After 2010, the Ontario Ministry of Natural Resources (OMNR) will carry on the AC program as a management activity. It is likely suspended experimental gill net (GN) samples will be used to ground truth future AC samples. In 2009, we characterized the length and age structure of Thunder Bay ciscoes using both MT samples and GN samples. Females represented 49% of the MT catch, but only 39% in GN samples. Catching a smaller proportion of females in GN samples resulted in a lower female population estimate and a higher estimated exploitation fraction (10.4%) compared to MT samples (7.1%). Experimental gill net effort was limited to 10-11.8 m water column depths where midwater trawl samples also caught roughly 40% females. Ciscoes ≥ age 17 (≥ 1992 year class) were common in Black Bay, but rare in Thunder Bay suggesting: 1) the stocks may be distinct; and 2) total mortality of ciscoes returning to spawn in Black Bay in recent years has been lower than ciscoes returning to Thunder Bay. Our mid-November 2009 effort to assess the Black Bay stock by sampling outside of the 3 bay in the lake proper was deemed successful, but this should be confirmed by sampling the Black Bay region during both mid- and late-November 2010.

Lake Superior↗

USGS2012

A standard operating procedure for the surgical implantation of transmitters in juvenile salmonids

Biotelemetry is a useful tool to monitor the movements of animals and is widely applied in fisheries research. Radio or acoustic technology can be used, depending on the study design and the environmental conditions in the study area. A broad definition of telemetry also includes the use of Passive Integrated Transponder (PIT) tags, either separately or with a radio or acoustic transmitter. To use telemetry, fish must be equipped with a transmitter. Although there are several attachment procedures available, surgical implantation of transmitters in the abdominal cavity is recognized as the best technique for long-term telemetry studies in general (Stasko and Pincock, 1977; Winter, 1996; Jepsen, 2003), and specifically for juvenile salmonids, Oncorhynchus spp. (Adams and others, 1998a, 1998b; Martinelli and others, 1998; Hall and others, 2009). Studies that use telemetry assume that the processes by which the animals are captured, handled, and tagged, as well as the act of carrying the transmitter, will have minimal effect on their behavior and performance. This assumption, commonly stated as a lack of transmitter effects, must be valid if telemetry studies are to describe accurately the movements and behavior of an entire population of interest, rather than the subset of that population that carries transmitters. This document describes a standard operating procedure (SOP) for surgical implantation of radio or acoustic transmitters in juvenile salmonids. The procedures were developed from a broad base of published information, laboratory experiments, and practical experience in tagging thousands of fish for numerous studies of juvenile salmon movements near Columbia River and Snake River hydroelectric dams. Staff from the Western Fisheries Research Center's Columbia River Research Laboratory (CRRL) frequently have used telemetry studies to evaluate new structures or operations at hydroelectric dams in the Columbia River Basin, and these evaluations typically require large numbers of tagged fish. For example, a study conducted at the dams on the Columbia River and funded by the U.S. Army Corps of Engineers required tagging and monitoring of 40,000 juvenile salmon during a 3-month migration period (Counihan and others, 2006a, 2006b; Perry and others, 2006). To meet the demands of such a large study, the authors and CRRL staff refined the SOP to increase efficiency in the tagging process while maintaining high standards of fish care. The SOP has been used in laboratory and field settings for more than 15 years, and consistently has produced low mortality rates (<1 percent) and transmitter loss rates (<0.01 percent) in the 24-36 hours after tagging. In addition to describing the detailed surgical procedures required for transmitter implantation, this document provides guidance on fish collection, handling and holding, and the release of tagged fish. Although often overlooked, or at least underemphasized, these processes can have a large impact on the outcome of the tagging procedure. Stress associated with the individual steps in handling and tagging can be cumulative and lethal (Maule and others, 1988; Wedemeyer and others, 1990; Portz and others, 2006), so the goal is to provide the best possible fish care at every step in order to manage the overall effect on study fish.

Open-File Report↗

USGS2025

Status and trends in the Lake Superior fish community, 2024

The U.S. Geological Survey has conducted annual fishery surveys across Lake Superior since 1978 that describe trends in fish species occurrence and relative abundance to inform fisheries management and ecosystem health. In 2024, the Lake Superior fish community was sampled with daytime bottom and surface trawls at 72 nearshore locations in June and 36 offshore locations in July. Nearshore bottom trawls collected 22,190 fish represented by 27 species or morphotypes. The number of species collected at each location ranged from 1 to 12, with a median of 5.5 species. Estimated fish biomass at individual locations ranged from <0.1 to 62.9 kg per ha with a lakewide mean of 3.7 kg per ha. Offshore bottom trawls collected 33,634 fish represented by 12 species or morphotypes. Estimated fish biomass at individual locations ranged from 0.6 to 25.8 kg per ha with a lakewide mean of 8.3 kg per ha, which was the second highest for the period-of-record. Lakewide average densities (fish per ha) of age-1 fish were 1 per ha for Bloater, 5 per ha for Cisco, 1 per ha for Lake Whitefish, 60 per ha for Rainbow Smelt, and 19 per ha for Kiyi. Surface trawling collected 5,177 larval Coregonus individuals which was the third fewest Coregonus larvae collected in a whole lake survey since the larval fish survey began in 2014. Nearshore mean larval Coregonus densities were 176 fish per ha in June 2024 and offshore densities were 7 fish per ha in July 2024. June and July surface water temperatures were near the warmest for the period-of-record.

Lake Superior↗

USGS2001

Microsatellite DNA variation Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) and cross-species amplification the Acipenseridae

O verharvest and habitat alteration have led to a collapse of most commercial Atlantic sturgeon( Acipenser oxyrinchus oxyrinchus )fisheries while pushing the species to rarity or extirpation in most of its historical range. A biologically sound conservation program for this species requires knowledge of its genetic diversity and of the evolutionary relationships among geographic populations. To address these research needs, six microsatellite loci were isolated from A. o. oxyrinchus . Pedigree analysis suggested that all are inherited in a codominant Mendelian pattern. The six loci were tested in ten additional sturgeon species from three genera and three apparent ploidy levels (4n, 8n, 16n). Approximately 70% of successful locus-species amplifications were polymorphic. Polysomy was observed most often in 8n and 16n species. Genetic diversity and population structure of A. o. oxyrinchus were assayed using three polymorphic Aox markers and four markers developed from lake sturgeon ( A. fulvescens ). A. o. oxyrinchus were sampled from the Altamaha River, Georgia, USA north to the St. Lawrence River, Quebec, Canada. Gulf sturgeon, A. o. desotoi , were sampled from the Suwannee River, Florida, USA, to assess differentiation between the subspecies. Seventy-seven alleles were observed to segregate into unique multilocus genotypes for each of the 392 individuals assayed. Mean diversity was greatest in the Chesapeake Bay (9.7 alleles per locus) and Delaware River (7.4 alleles per locus) collections, and lowest in the St. Lawrence River (4.6 alleles per locus). Mean heterozygosity across seven loci ranged from 44.3% (St. Lawrence River) to 62.6% (Altamaha River). Significant allelic heterogeneity was observed in 82% of pairwise comparisons as well as a global test (p < 0.0001) for A. o. oxyrinchus collections. Genetic distance suggests the presence of at least six subpopulations in A. o. oxyrinchus : St. Lawrence River, St. John River, Hudson River, Delaware River, Albemarle Sound, and Altamaha River. Genetic and geographic distances were positively correlated (r = 0.57, p < 0.03) among A. o. oxyrinchus , suggesting isolation by distance and philopatry. Hierarchical gene diversity analysis indicated significant genetic population structure at every level. Maximum likelihood assignment tests correctly assigned individual fish to collection with a high rate of success (mean = 87.5%); this and other lines of evidence indicated that the Chesapeake Bay collection represents a mixed population of sub-adult sturgeon from northern and southern Atlantic coast populations. Population structure was correlated with that suggested by earlier mitochondrial (mt) DNA analyses. Significant diversity was observed between two Canadian populations from which only a single mt DNA haplotype has been reported.

Conservation Genetics↗

USGS2010

Seasonal and spatial distribution patterns of finfish and selected invertebrates in coastal lagoons of northeastern Florida, 2002-2004

The U.S. Geological Survey conducted a survey of juvenile fisheries resources, in cooperation with the St. Johns River Water Management District and Volusia County, to establish baseline data on spatial and temporal distribution patterns of estuarine fish. The survey was conducted from November 2001 to March 2005 and the baseline data established for the survey in the Northern Coastal Basins were collected from January 2002 to December 2004. The study area included the bar-built estuaries ranging from just north of St. Augustine, Florida, south to Ponce de Leon Inlet. Sampling protocols developed by the Florida Fish and Wildlife Research Institute for their statewide Fisheries Independent Monitoring (FIM) program were replicated to allow for comparability with FIM program results. Samples were collected monthly from randomly selected stations based on a geographically stratified design. Finfish and selected invertebrates were collected using a 21.3-meter center-bag seine with a 3-millimeter mesh, and a 6.1-meter otter trawl with a 3-millimeter mesh liner. Total estimated fish and selected invertebrate densities were similar to estimates from FIM projects in adjacent areas and were characterized by similar dominant species. Preliminary analysis indicates that observed species distribution patterns were mainly a function of proximity to the three inlets within the study area. The two regions encompassing the northern Tolomato River and the Tomoka River and Basin are farthest from inlets and appear to function as oligohaline nursery areas. Those two areas had the greatest estimated densities of shellfish and juvenile sciaenid (drum) species associated with oligohaline waters (for example, Micropogonias undulatus, Sciaenops ocellatus and Cynoscion nebulosus). Samples near inlets, and between the two northern inlets, had greater estimated densities of species limited to euhaline waters, including juvenile clupeids collected at relatively high abundance and species of marine strays collected in low abundance. Based on correspondence analysis, seasonal variation dominated the ordination of seine samples and spatial variation dominated the ordination of trawl samples; this was due to differences in the number and timing of taxa found near inlets versus oligohaline regions. The absence of seagrass habitat in the Northern Coastal Basins is reflected by the absence of a seagrass-fish assemblage.

Scientific Investigations Report↗

USGS1994

Overview of the National Water-Quality Assessment Program

The Nation's water resources are the basis for life and our economic vitality. These resources support a complex web of human activities and fishery and wildlife needs that depend upon clean water. Demands for good-quality water for drinking, recreation, farming, and industry are rising, and as a result, the American public is concerned about the condition and sustainability of our water resources. The American public is asking: Is it safe to swim in and drink water from our rivers or lakes? Can we eat the fish that come from them? Is our ground water polluted? Is water quality degrading with time, and if so, why? Has all the money we've spent to clean up our waters, done any good? The U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program was designed to provide information that will help answer these questions. NAWQA is designed to assess historical, current, and future water-quality conditions in representative river basins and aquifers nationwide. One of the primary objectives of the program is to describe relations between natural factors, human activities, and water-quality conditions and to define those factors that most affect water quality in different parts of the Nation. The linkage of water quality to environmental processes is of fundamental importance to water-resource managers, planners, and policy makers. It provides a strong and unbiased basis for better decisionmaking by those responsible for making decisions that affect our water resources, including the United States Congress, Federal, State, and local agencies, environmental groups, and industry. Information from the NAWQA Program also will be useful for guiding research, monitoring, and regulatory activities in cost effective ways.

Open-File Report↗

USGS2003

Simulation of hydrodynamics, temperature, and dissolved oxygen in Bull Shoals Lake, Arkansas, 1994-1995

Outflow from Bull Shoals Lake and other White River reservoirs supports a cold-water trout fishery of substantial economic yield in north-central Arkansas and south-central Missouri. The Arkansas Game and Fish Commission has requested an increase in existing minimum flows through the Bull Shoals Lake dam to increase the amount of fishable waters downstream. Information is needed to assess the impact of increased minimum flows on temperature and dissolved-oxygen concentrations of reservoir water and the outflow.A two-dimensional, laterally averaged, hydrodynamic, temperature, and dissolved-oxygen model was developed and calibrated for Bull Shoals Lake, located on the Arkansas-Missouri State line. The model simulates water-surface elevation, heat transport, and dissolved- oxygen dynamics. The model was developed to assess the impacts of proposed increases in minimum flow from 4.6 cubic meters per second (the existing minimum flow) to 22.6 cubic meters per second (the increased minimum flow). Simulations included assessing the impact of (1) increased minimum flows and (2) increased minimum flows with increased initial water-surface elevation of 1.5 meters in Bull Shoals Lake on outflow temperatures and dissolved-oxygen concentrations.The increased minimum flow simulation (without increasing initial water-surface elevation) increased the water temperature and dissolved-oxygen concentration in the outflow. Conversely, the increased minimum flow and increased initial water-surface elevation (1.5 meters) simulation decreased outflow water temperature and dissolved-oxygen concentration through time. However, results from both scenarios for water temperature and dissolved-oxygen concentration were within the boundaries of the error between measured and simulated water column profile values.

Water-Resources Investigations Report↗