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USGS2016

The genetic basis of anoxygenic photosynthetic arsenite oxidation

“Photoarsenotrophy”, the use of arsenite as an electron donor for anoxygenic photosynthesis, is thought to be an ancient form of phototrophy along with the photosynthetic oxidation of Fe(II), H 2 S, H 2 , and NO 2 - . Photoarsenotrophy was recently identified from Paoha Island's (Mono Lake, CA) arsenic-rich hot springs. The genomes of several photoarsenotrophs revealed a gene cluster, arxB2AB1CD, where arxA is predicted to encode for the sole arsenite oxidase. The role of arxA in photosynthetic arsenite oxidation was confirmed by disrupting the gene in a representative photoarsenotrophic bacterium, resulting in the loss of light-dependent arsenite oxidation. In situ evidence of active photoarsenotrophic microbes was supported by arxA mRNA detection for the first time, in red-pigmented microbial mats within the hot springs of Paoha Island. This work expands on the genetics for photosynthesis coupled to new electron donors and elaborates on known mechanisms for arsenic metabolism, thereby highlighting the complexities of arsenic biogeochemical cycling.

Environmental Microbiology↗

USGS2025

Land use and soil characteristics are associated with increased risk of treponeme-associated hoof disease in elk

Environments can shape the occurrence and extent of disease outbreaks in wildlife. We studied the effects of environmental features on the occurrence of treponeme-associated hoof disease (TAHD), an emerging infectious disease of free-ranging elk ( Cervus canadensis ), in southwestern Washington, USA. During the 2016–2022 harvest seasons, successful elk hunters returned mandatory harvest reports and noted the presence or absence of hoof abnormalities indicative of TAHD. We used generalized linear models and an information-theoretic approach to model selection to relate (1) the spatial distribution of hoof abnormalities to features of landscapes (land cover, topography, and soil characteristics) and (2) the temporal distribution of hoof abnormalities to precipitation during the year preceding the harvest season. The probability of hoof disease increased with soil clay content and proportion of agricultural land (88% of model weight). We found no conclusive evidence for an effect of precipitation on the occurrence of TAHD, but this could relate to relatively high annual precipitation (>140 cm) in the study area. Nevertheless, disease cases may have been negatively associated with precipitation during February–June (55% of model weight). Soils and land management practices may increase the risk of hoof disease by promoting the survival of pathogens that cause TAHD, the susceptibility of elk to infection, or the intensity of pathogen transmission among elk when congregated. Focusing on areas where the risk of disease is greatest may facilitate the detection of TAHD during surveillance. Likewise, removing infected elk and dispersing uninfected elk from areas with the greatest risk of disease may enhance the effectiveness of efforts to reduce transmission. Basing this work on the knowledge that disease risk is modified by factors of hosts, pathogens, and environments, this study serves as an application of the epidemiological triad framework to better understand the ecology and epidemiology of an emerging infectious disease in wildlife.

Washington↗

USGS2020

Anthropogenic pollutants and biomarkers for the identification of 2011 Tohoku-oki tsunami deposits (Japan)

Organic geochemistry is commonly used in environmental studies. In tsunami research, however, its applications are in their infancy and it is still rarely used. We present results for two types of organic geochemical markers, biomarkers and anthropogenic markers, present in deposits left by 2011 Tohoku-oki tsunami on the Sendai Plain, Japan. As the tsunami inundated the coastal lowland up to 4.85 km inland, sediments from various sources were eroded, transported and deposited. This led to the distribution of biomarkers from different sources across the Sendai Plain creating a unique geochemical signature in the tsunami deposits. The tsunami also caused destruction along the Sendai coastline, leading to the release of large quantities of environmental pollutants (e.g., fossil fuels, tarmac, pesticides, plastics, etc.) that were distributed across the inundated area. These anthropogenic markers, represented by three main compound groups (polycyclic aromatic hydrocarbons, pesticides, and halogenated compounds), were preserved in tsunami deposits (at least until 2013, prior to land clearing). Their concentrations differed significantly from the pre- and post-tsunami background contamination levels. Organic proxy concentrations can differ for sand and mud deposits due to various factors (e.g., preservation, dilution, microbial alteration). However, it can be concluded that anthropogenic markers and biomarkers have the potential to be a valuable proxy for future studies of recent tsunami deposits because of their high source specificity and relatively good preservation potential providing information about sediment sources and transport pathways (e.g., marine source, evidence of backwash).

Sendai↗

USGS2007

'Snake River (SR)-type' volcanism at the Yellowstone hotspot track: Distinctive products from unusual, high-temperature silicic super-eruptions

A new category of large-scale volcanism, here termed Snake River (SR)-type volcanism, is defined with reference to a distinctive volcanic facies association displayed by Miocene rocks in the central Snake River Plain area of southern Idaho and northern Nevada, USA. The facies association contrasts with those typical of silicic volcanism elsewhere and records unusual, voluminous and particularly environmentally devastating styles of eruption that remain poorly understood. It includes: (1) large-volume, lithic-poor rhyolitic ignimbrites with scarce pumice lapilli; (2) extensive, parallel-laminated, medium to coarse-grained ashfall deposits with large cuspate shards, crystals and a paucity of pumice lapilli; many are fused to black vitrophyre; (3) unusually extensive, large-volume rhyolite lavas; (4) unusually intense welding, rheomorphism, and widespread development of lava-like facies in the ignimbrites; (5) extensive, fines-rich ash deposits with abundant ash aggregates (pellets and accretionary lapilli); (6) the ashfall layers and ignimbrites contain abundant clasts of dense obsidian and vitrophyre; (7) a bimodal association between the rhyolitic rocks and numerous, coalescing low-profile basalt lava shields; and (8) widespread evidence of emplacement in lacustrine-alluvial environments, as revealed by intercalated lake sediments, ignimbrite peperites, rhyolitic and basaltic hyaloclastites, basalt pillow-lava deltas, rhyolitic and basaltic phreatomagmatic tuffs, alluvial sands and palaeosols. Many rhyolitic eruptions were high mass-flux, large volume and explosive (VEI 6-8), and involved H2O-poor, low-??18O, metaluminous rhyolite magmas with unusually low viscosities, partly due to high magmatic temperatures (900-1,050??C). SR-type volcanism contrasts with silicic volcanism at many other volcanic fields, where the fall deposits are typically Plinian with pumice lapilli, the ignimbrites are low to medium grade (non-welded to eutaxitic) with abundant pumice lapilli or fiamme, and the rhyolite extrusions are small volume silicic domes and coule??es. SR-type volcanism seems to have occurred at numerous times in Earth history, because elements of the facies association occur within some other volcanic fields, including Trans-Pecos Texas, Etendeka-Paran, Lebombo, the English Lake District, the Proterozoic Keewanawan volcanics of Minnesota and the Yardea Dacite of Australia. ?? Springer-Verlag 2007.

Bulletin of Volcanology↗

USGS2020

The future of landslides’ past—A framework for assessing consecutive landsliding systems

Landslides often happen where they have already occurred in the past. The potential of landslides to reduce or enhance conditions for further landsliding has long been recognized and has often been reported, but the mechanisms and spatial and temporal scales of these processes have previously received little specific attention. Despite a preponderance of qualitative and anecdotal evidence, there has been limited analysis. As a result, there is little consensus on the meaning of terms such as landslide repetition, recurrence, and reactivation. This source of confusion is evident when such terms are also used to describe systems where landsliding is prevalent but unrelated to landslide history. Recent findings, partly based on a rare multi-temporal landslide inventory for an area in Italy, show that the impacts of earlier landslides affect a substantial fraction of landslides, that landslides following earlier landslides differ from those that do not, and that accounting for the effect of previous landslides can improve susceptibility assessments. These findings await confirmation in other landslide prone landscapes but show that consecutive landsliding deserves more attention, which requires consistent terminology. No such terminology is presently available, and we therefore propose it in this manuscript. We use the term 'uncorrelated landsliding' to describe situations where landslides are common, but where a correlation with environmental variables such as terrain steepness is not implied. We propose 'correlated landsliding' to describe situations where landslides are common and correlations with environmental variables exist, and 'path-dependent landsliding' to describe situations where causal relations exist between consecutive landslides, for instance when landslides occur at the scarp of previous landslides. These are situations where past landslides impact future landslides. Within the path-dependent category, we distinguish three subcategories based on the spatial distance between earlier and later landslides: 'reactivation' or 'continuation' if essentially the same material recommences or continues to slide, 'local activation' if an earlier slide causes changes in a local hillslope that cause a later slide, and 'remote activation' if an earlier slide causes changes elsewhere in the landscape that cause a later landslide. We use this proposed set of terms to outline some prominent knowledge gaps and potential research questions.

Landslides↗

USGS2019

A ship's ballasting history as an indicator of foraminiferal invasion potential--An example from Prince William Sound, Alaska, USA

We investigated the potential role of ballast sediment from coastal and transoceanic oil tankers arriving and de-ballasting in Port Valdez as a vector for the introduction of invasive benthic foraminifera in Prince William Sound, Alaska. Forty-one ballast sediment samples were obtained in 1998-1999 from 11 oil tankers that routinely discharged their ballast in Prince William Sound after sailing from other West Coast (Los Angeles/Long Beach Harbor, San Francisco Bay, and Puget Sound) or foreign ports (Japan, Korea, and China) where they originally ballasted. Forty of these samples contained benthic foraminifera, including 27 (66%) with the introduced species Trochammina hadai Uchio from nine (81%) of the ships. In all, 59 species were recovered and foraminiferal abundance peaked at 27,000 specimens per gram dry sediment. Of the 41 samples, three were stained and living benthic foraminifera were recovered in all three of them. The entrained foraminifera reflected the number of times ballasting occurred (single or multiple sources), the location of ballasting (estuarine or offshore), and post-acquisition alteration of the sediment (i.e., growth of gypsum crystals at the possible expense of calcareous tests). In temperate regions, sediment samples resulting from single-source ballasting in estuaries (SSBE), multiple-source ballasting in estuaries (MSBE), single-source ballasting offshore (SSBO), and a combination of SSBO and SSBE or MSBE, typically contained increasingly higher species richness, respectively. The potential for an invasion is dependent on the presence of viable candidates and their survivability, their abundance in the ballasting location, and the number of times ballasting occurs, most of which are evident from the ship’s ballasting history. Trochammina hadai is a good example of a successful invasive in Prince William Sound for the following reasons: 1) the species is abundant enough in West Coast and foreign ports where ballasting occurs that sufficient individuals needed for reproduction may be transported to the receiving waters; 2) Port Valdez, in particular, receives repeated and frequent inoculations from the same source ports where T. hadai is present; 3) large quantities of sediment are taken up by commercial vessels during ballasting and benthic foraminifera occur in abundance in ballast sediment; 4) ballast sediment provides a suitable environment in which benthic foraminifera can survive for extended periods of time during transport; 5) T. hadai flourishes in a wide range of temperatures and environmental conditions that characterize both the ports where ballasting takes place as well as in Port Valdez where de-ballasting occurs; and 6) the species is capable of asexual reproduction and possibly the ability to form a dormant resting stage, both of which have the potential to lower the threshold for colonization. Clearly, ballast sediment is a viable vector for the introduction of T. hadai and other invasives into Alaskan ports and elsewhere worldwide.

Alaska↗

USGS1986

Wildlife in some areas of New Mexico and Texas accumulate elevated DDE residues, 1983

Over the last decade, data gathered by the U.S. Fish & Wildlife Service's National Contaminant Biomonitoring Program have identified an area of elevated DDE contamination in portions of New Mexico and Texas. Extensive wildlife sampling in 1983 confirmed that DDE, the major metabolite of the insecticide DDT, was present at high concentrations in wildlife at selected sites in the Rio Grande and Pecos River drainages. DDE in carcasses ranged up to 47 ppm (wet weight) in western kingbirds ( Tyrannus verticalis ), 35 ppm in house sparrows ( Passer domesticus ), 46 ppm in Brazilian free-tailed bats ( Tadarida brasiliensis ), and 104 ppm in whiptail lizards ( Cnemidophorus spp.). DDE was also detected in gut contents from western kingbirds at some of the highest concentrations ever reported, ranging up to 21 ppm in proventricular samples. An average of 40% of the eggs of black-crowned night-herons ( Nycticorax nycticorax ) from two sites along the Pecos River in New Mexico had DDE levels (≥8 ppm) that have been associated in other studies with impaired reproduction. In contrast, wintering mallards ( Anas platyrhynchos ) and American coots ( Fulica americana ) from the study area did not accumulate elevated DDE levels. DDE in wildlife samples at control sites (nonagricultural areas) was either absent or averaged less than 0.35 ppm. Collectively, these data provide evidence that there is major DDE contamination of several vertebrate species in portions of the Rio Grande and Pecos River drainages, but whether the contamination is recent or residual was not determined. Apparently, the source was not DDE contamination present in dicofol (4-chloro- a -(4-chlorophenyl)- a -(trichloromethyl) benzenemethanol); neither dicofol nor its metabolite, p,p' -dichlorobenzophenone, were detected in wildlife carcasses (0.1 ppm detection limit) or proventricular contents (0.01 ppm detection limit) of western kingbirds.

New Mexico, Texas↗

USGS1988

Denitrification in a sand and gravel aquifer

Denitrification was assayed by the acetylene blockage technique in slurried core material obtained from a freshwater sand and gravel aquifer. The aquifer, which has been contaminated with treated sewage for more than 50 years, had a contaminant plume greater than 3.5-km long. Near the contaminant source, groundwater nitrate concentrations were greater than 1 mM, whereas 0.25 km downgradient the central portion of the contaminant plume was anoxic and contained no detectable nitrate. Samples were obtained along the longitudinal axis of the plume (0 to 0.25 km) at several depths from four sites. Denitrification was evident at in situ nitrate concentrations at all sites tested; rates ranged from 2.3 to 260 pmol of N 2 O produced (g of wet sediment) −1 h −1 . Rates were highest nearest the contaminant source and decreased with increasing distance downgradient. Denitrification was the predominant nitrate-reducing activity; no evidence was found for nitrate reduction to ammonium at any site. Denitrifying activity was carbon limited and not nitrate limited, except when the ambient nitrate level was less than the detection limit, in which case, even when amended with high concentrations of glucose and nitrate, the capacity to denitrify on a short-term basis was lacking. These results demonstrate that denitrification can occur in groundwater systems and, thereby, serve as a mechanism for nitrate removal from groundwater.

Massachusetts↗

USGS2012

Experimental deformation of topaz crystals: Possible embrittlement by intracrystalline water

Crystallographically oriented single‐crystal prisms of gem quality topaz (composition AlSiO (OH− F) where x = 0.04 ± 0.01) were deformed at a confining pressure of 1.50 GPa, a temperature of 800°C, and a strain rate of 2×10 s. Under nearly identical conditions, all crystals of anhydrous rock‐forming minerals that have been tested to date, such as olivine, quartz, feldspars, pyroxenes, and refractory oxides, deform plastically; in contrast, our topaz crystals failed by brittle fracture regardless of the orientation of the compression direction. No optical evidence for plastic deformation was detected. Another suite of experiments with compression perpendicular to the (001) cleavage at = 100°–950°C and a strain rate of 2×10 s displayed two regimes of behavior: (1) at >400°C, fracture strength was independent of temperature, and fracture occurred on one or two surfaces parallel to {103}; (2) at <400°C, the fracture strength increased rapidly with decreasing temperature, no macroscopic stress drop was observed, and many closely spaced conjugate fractures formed on (103) and (103). The anomalous brittleness of topaz compared to anhydrous silicate and oxide crystals indicates that intracrystalline “water” plays a role in the embrittlement. We suggest that water within the topaz crystals promotes fracture in ways similar to the mechanisms of slow crack growth aided by environmental moisture.

Journal of Geophysical Research B: Solid Earth↗

USGS1979

Diet-related die-off of captive black-crowned night herons

Several species of herons, which are top-level consumers in aquatic food chains, have experienced population declines in certain areas o f their normal range (7,13) -- areas in which elevated levels of various environmental pollutants are known to occur. (6) To determine the effects of environmental contaminants on the Ardeidae, a colony of black-crowned night herons (Nycticorax nycticorax) was established in 1972 at the Patuxent Wildlife Research Center. The night heron was selected as the model species because of its widespread occurrence and its ability to survive and reproduce in captivity. Birds for the colony were obtained from either the New York Zoological Park and Dallas Zoo or were wild-caught along the Maryland and Virginia coasts in 1972, 1973, and 1975. This report describes a die-off in the colony following a change in the origina of their food source. The data suggest that the mortality was diet-related, most likely caused by vitamin E deficiency. Excessive dietary thiaminase may have resulted in concurrent thiamine deficiency, but evidence for this is equivocal.

American Association of Zoo Veterinarians, Annual ↗

USGS2004

Bioenergetics-based modeling of individual PCB congeners in nestling tree swallows from two contaminated sites on the Upper Hudson River, New York

A bioenergetics-based model was used to simulate the accumulation of total PCBs and 20 PCB congeners by nestling tree swallows at two contaminated sites on the Upper Hudson River, New York. PCB concentrations in birds were calculated as the sum of inherited residues and those acquired through consumption of contaminated insects. Close agreement between simulations and measured residues in 5-, 10-, and 15-day-old nestlings was obtained when PCB concentrations in the diet were set equal to those in food boli taken from adult birds. These simulations were further optimized by fitting the value of a dietary assimilation efficiency constant. Fitted constants for both sites were similar and averaged about 0.7. An evaluation of model performance for individual congeners provided no evidence of metabolic biotransformation. The results of this study are consistent with a companion effort in which principal components analysis was used to compare PCB congener patterns in insects and in tree swallow eggs, nestlings, and adults. Together, these studies establish a quantitative linkage between nestling tree swallows and the insects that they consume and provide strong support for the use of nestling swallows as a biomonitoring species for exposure assessment.

Environmental Science & Technology↗

USGS2021

The demographic and ecological factors shaping diversification among rare Astragalus species

Aim Evolutionary radiations are central to the origin and maintenance of biodiversity, yet we rarely understand how they are jointly shaped by demography and ecological opportunity. Astragalus is the largest plant genus in the world and is disproportionately comprised of rare species restricted to narrow geographic and ecological regions. Here, we explored the demographic and ecological mechanisms underlying patterns of diversification in a threatened Astragalus species complex endemic to a small desert region in the western United States. Location Southeast Utah, USA. Methods We used high‐throughput DNA sequencing to infer genetic structure, genetic diversity, and demographic history (i.e., the timing of population divergence, effective population sizes and gene flow) among Astragalus taxa. We performed landscape genetic analyses to quantify the relationships between genetic differentiation, geographic distance, and ecological distance based on bioclimatic and soil variables. Finally, we identified putative adaptive loci that show higher genetic differentiation between taxa than expected based on our inferred neutral demographic model. Results We found evidence of low gene flow between three highly differentiated taxa (currently delineated as A . iselyi , A . sabulosus var. sabulosus and A. sabulosus var. vehiculus ) that rapidly diverged from a small ancestral population near the beginning of the last glacial period. Genomic signatures revealed long‐term effective population sizes are 2–10× larger than recent census sizes, perhaps due to the maintenance of standing genetic variation through seed banks. Consistent with limited dispersal and local adaptation, genome‐wide patterns of differentiation are shaped by geographic distance (isolation‐by‐distance) and climate and soil variation (isolation‐by‐environment). Taxon‐specific adaptation is further supported by uncovering putative adaptive loci. Main Conclusions Our findings suggest that interactions between demography (i.e., dispersal limitations and seeds banks) and ecological opportunity (i.e., spatial and temporal environmental heterogeneity) may promote diversification, endemism, and rarity among closely related Astragalus species and similar plant clades distributed across complex landscapes.

Utah↗

USGS1996

Evidence for the correlation of the upper part of the Llewellyn Formation (Pennsylvania Anthracite region), with the Monongahela Formation

A plant fossil assemblage from the roof shale of the No. 25 anthracite bed in Pennsylvania indicates that the upper part of the Llewellyn Formation is much younger than the lower part of the Allegheny Group or Conemaugh Group correlation that was indicated by Read and Mamay (1960). These results confirm the conclusions of Fontaine and White (1880), White (1900), and Darrah (1969) who suggested that the highest coals of the Llewellyn Formation could be equivalent to the Monongahela Group.

Northeastern Geology and Environmental Sciences↗

USGS2013

The δ2H and δ18O of tap water from 349 sites in the United States and selected territories

Because the stable isotopic compositions of hydrogen (δ 2 H) and oxygen (δ 18 O) of animal (including human) tissues, such as hair, nail, and urine, reflect the δ 2 H and δ 18 O of water and food ingested by an animal or a human and because the δ 2 H and δ 18 O of environmental waters vary geographically, δ 2 H and δ 18 O values of tap water samples collected in 2007-2008 from 349 sites in the United States and three selected U.S. territories have been measured in support of forensic science applications, creating one of the largest databases of tap water δ 2 H and δ 18 O values to date. The results of replicate isotopic measurements for these tap water samples confirm that the expanded uncertainties (U = 2μ c ) obtained over a period of years by the Reston Stable Isotope Laboratory from δ 2 H and δ 18 O dual-inlet mass spectrometric measurements are conservative, at ±2‰ and ±0.2 ‰, respectively. These uncertainties are important because U.S. Geological Survey data may be needed for forensic science applications, including providing evidence in court cases. Half way through the investigation, an isotope-laser spectrometer was acquired, enabling comparison of dual-inlet isotope-ratio mass spectrometric results with isotope-laser spectrometric results. The uncertainty of the laser-based δ 2 H measurement results for these tap water samples is comparable to the uncertainty of the mass spectrometric method, with the laser-based method having a slightly lower uncertainty. However, the δ 18 O uncertainty of the laser-based method is more than a factor of ten higher than that of the dual-inlet isotoperatio mass spectrometric method.

Guam, Puerto Rico, St. John, U.S. Virgin Islands↗

USGS2011

Estimating temporal trend in the presence of spatial complexity: A Bayesian hierarchical model for a wetland plant population undergoing restoration

Monitoring programs that evaluate restoration and inform adaptive management are important for addressing environmental degradation. These efforts may be well served by spatially explicit hierarchical approaches to modeling because of unavoidable spatial structure inherited from past land use patterns and other factors. We developed Bayesian hierarchical models to estimate trends from annual density counts observed in a spatially structured wetland forb (Camassia quamash [camas]) population following the cessation of grazing and mowing on the study area, and in a separate reference population of camas. The restoration site was bisected by roads and drainage ditches, resulting in distinct subpopulations ("zones") with different land use histories. We modeled this spatial structure by fitting zone-specific intercepts and slopes. We allowed spatial covariance parameters in the model to vary by zone, as in stratified kriging, accommodating anisotropy and improving computation and biological interpretation. Trend estimates provided evidence of a positive effect of passive restoration, and the strength of evidence was influenced by the amount of spatial structure in the model. Allowing trends to vary among zones and accounting for topographic heterogeneity increased precision of trend estimates. Accounting for spatial autocorrelation shifted parameter coefficients in ways that varied among zones depending on strength of statistical shrinkage, autocorrelation and topographic heterogeneity-a phenomenon not widely described. Spatially explicit estimates of trend from hierarchical models will generally be more useful to land managers than pooled regional estimates and provide more realistic assessments of uncertainty. The ability to grapple with historical contingency is an appealing benefit of this approach.

PLoS ONE↗

USGS2016

Discharge, water temperature, and water quality of Warm Mineral Springs, Sarasota County, Florida: A retrospective analysis

Warm Mineral Springs, located in southern Sarasota County, Florida, is a warm, highly mineralized, inland spring. Since 1946, a bathing spa has been in operation at the spring, attracting vacationers and health enthusiasts. During the winter months, the warm water attracts manatees to the adjoining spring run and provides vital habitat for these mammals. Well-preserved late Pleistocene to early Holocene-age human and animal bones, artifacts, and plant remains have been found in and around the spring, and indicate the surrounding sinkhole formed more than 12,000 years ago. The spring is a multiuse resource of hydrologic importance, ecological and archeological significance, and economic value to the community. The pool of Warm Mineral Springs has a circular shape that reflects its origin as a sinkhole. The pool measures about 240 feet in diameter at the surface and has a maximum depth of about 205 feet. The sinkhole developed in the sand, clay, and dolostone of the Arcadia Formation of the Miocene-age to Oligocene-age Hawthorn Group. Underlying the Hawthorn Group are Oligocene-age to Eocene-age limestones and dolostones, including the Suwannee Limestone, Ocala Limestone, and Avon Park Formation. Mineralized groundwater, under artesian pressure in the underlying aquifers, fills the remnant sink, and the overflow discharges into Warm Mineral Springs Creek, to Salt Creek, and subsequently into the Myakka River. Aquifers described in the vicinity of Warm Mineral Springs include the surficial aquifer system, the intermediate aquifer system within the Hawthorn Group, and the Upper Floridan aquifer in the Suwannee Limestone, Ocala Limestone, and Avon Park Formation. The Hawthorn Group acts as an upper confining unit of the Upper Floridan aquifer. Groundwater flow paths are inferred from the configuration of the potentiometric surface of the Upper Floridan aquifer for September 2010. Groundwater flow models indicate the downward flow of water into the Upper Floridan aquifer in inland areas, and upward flow toward the surface in coastal areas, such as at Warm Mineral Springs. Warm Mineral Springs is located in a discharge area. Changes in water use in the region have affected the potentiometric surface of the Upper Floridan aquifer. Historical increase in groundwater withdrawals resulted in a 10- to 20-foot regional decline in the potentiometric surface of the Upper Floridan aquifer by May 1975 relative to predevelopment levels and remained at approximately that level in May 2007 in the area of Warm Mineral Springs. Discharge measurements at Warm Mineral Springs (1942–2014) decreased from about 11–12 cubic feet per second in the 1940s to about 6–9 cubic feet per second in the 1970s and remained at about that level for the remainder of the period of record. Similarity of changes in regional water use and discharge at Warm Mineral Springs indicates that basin-scale changes to the groundwater system have affected discharge at Warm Mineral Springs. Water temperature had no significant trend in temperature over the period of record, 1943–2015, and outliers were identified in the data that might indicate inconsistencies in measurement methods or locations. Within the regional groundwater basin, Warm Mineral Springs is influenced by deep Upper Floridan aquifer flow paths that discharge toward the coast. Associated with these flow paths, the groundwater temperatures increase with depth and toward the coast. Multiple lines of evidence indicate that a source of warm groundwater to Warm Mineral Springs is likely the permeable zone of the Avon Park Formation within the Upper Floridan aquifer at a depth of about 1,400 to 1,600 feet, or deeper sources. The permeable zone contains saline groundwater with water temperatures of at least 95 degrees Fahrenheit. The water quality of Warm Mineral Springs, when compared with other springs in Florida had the highest temperature and the greatest mineralized content. Warm Mineral Springs water is characterized by a slight-green color, with varying water clarity, low dissolved oxygen (indicative of deep groundwater), and a hydrogen sulfide odor. Water-quality samples detected ammonium-nitrogen and nitrates, but at low concentrations. The drinking water standard for nitrate adopted by the U.S. Environmental Protection Agency is 10 milligrams per liter, measured as nitrogen. Water samples collected at spring vents by divers on April 29, 2015, had concentrations of 0.9 milligram per liter nitrate-nitrogen at vent A and 0.04–0.05 milligram per liter at vents B, C, and D. Typically, the water clarity is highest in the morning (about 30 feet Secchi depth) and often decreases throughout the day. Analysis of existing data provided some insight into the hydrologic processes affecting Warm Mineral Springs; however, data have been sparsely and discontinuously collected since the 1940s. Continuous monitoring of hydrologic characteristics such as discharge, water temperature, specific conductance, and water-quality indicators, such as nitrate and turbidity (water clarity), would be valuable for monitoring and development of models of spring discharge and water quality. In addition, water samples could be analyzed for isotopic tracers, such as strontium, and the results used to identify and quantify the sources of groundwater that discharge at Warm Mineral Springs. Groundwater flow/transport models could be used to evaluate the sensitivity of the quality and quantity of water flowing from Warm Mineral Springs to changes in climate, aquifer levels, and water use.

Florida↗

USGS2014

Fate of injected CO2 in the Wilcox Group, Louisiana, Gulf Coast Basin: Chemical and isotopic tracers of microbial–brine–rock–CO2 interactions

The “2800’ sandstone” of the Olla oil field is an oil and gas-producing reservoir in a coal-bearing interval of the Paleocene–Eocene Wilcox Group in north-central Louisiana, USA. In the 1980s, this producing unit was flooded with CO 2 in an enhanced oil recovery (EOR) project, leaving &sim;30% of the injected CO 2 in the 2800’ sandstone post-injection. This study utilizes isotopic and geochemical tracers from co-produced natural gas, oil and brine to determine the fate of the injected CO 2 , including the possibility of enhanced microbial conversion of CO 2 to CH 4 via methanogenesis. Stable carbon isotopes of CO 2 , CH 4 and DIC, together with mol% CO 2 show that 4 out of 17 wells sampled in the 2800’ sandstone are still producing injected CO 2 . The dominant fate of the injected CO 2 appears to be dissolution in formation fluids and gas-phase trapping. There is some isotopic and geochemical evidence for enhanced microbial methanogenesis in 2 samples; however, the CO 2 spread unevenly throughout the reservoir, and thus cannot explain the elevated indicators for methanogenesis observed across the entire field. Vertical migration out of the target 2800’ sandstone reservoir is also apparent in 3 samples located stratigraphically above the target sand. Reservoirs comparable to the 2800’ sandstone, located along a 90-km transect, were also sampled to investigate regional trends in gas composition, brine chemistry and microbial activity. Microbial methane, likely sourced from biodegradation of organic substrates within the formation, was found in all oil fields sampled, while indicators of methanogenesis (e.g. high alkalinity, δ 13 C-CO 2 and δ 13 C-DIC values) and oxidation of propane were greatest in the Olla Field, likely due to its more ideal environmental conditions (i.e. suitable range of pH, temperature, salinity, sulfate and iron concentrations).

Louisiana↗

USGS2022

Multi-factor biotopes as a method for detailed site characterization in diverse benthic megafaunal communities and habitats in deep-water off Morro Bay, California

Here we describe the methods and results for biological characterization of the benthos on a previously unexplored area of central California, USA seafloor. We conducted 40 remotely operated vehicle dives from 371 to 1173 m water depth. Seafloor habitats and megafauna (fish and invertebrates) were documented from 46.8 km of seafloor video footage. Our expanded development and analysis of biotopes from quantitative data allowed us to describe detailed biological communities, along with the physical characteristics and habitat associations within the study area. This method provides a framework for potential monitoring, detection of future environmental change (natural and anthropogenic) and comprehensive comparison to other deep water regions. From 185 h of observational video at 25 sites, nearly 120,000 annotations of organisms, habitat characters, biological detritus and anthropogenic debris were recorded and analyzed. We identified a total of 228 taxa, with 173 of them present on linear quantitative transects. Species richness for transects ranged from 0.04 to 0.28 m-2 (8–55 taxa), with densities ranging from 0.07 to 5.20 ind. m−2. Both were highest on hard substrate with greatest surface area. Densities decreased with depth. Within soft substratum zones was a large field of pockmarks, which are seafloor depressions averaging 175 m in diameter and 5 m in depth. Pockmarks have sometimes been associated with seafloor gas seepage, but here we found no biological evidence of chemosynthetic organisms. No significant differences were found in either density nor species richness at pockmark sites vs. non-pockmark sites. Mud draped greenish-black coarse sand occurred only in low oxygen areas, while hummocky, rugose mud supported somewhat different species than flat mud plains. Seventy percent of the transects occurred inside the oxygen minimum zone. We conclude that high rugosity, slope, and the presence of hard substratum were better predictors of species richness and density than oxygen concentration in this specific study. Abundant biological detritus, in the form of dead and dying pelagic pyrosomes and salps, created a large, presumably ephemeral flux of carbon to the seafloor during the study period.

California↗