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At least 901 records · Page 50Linked to original sources

Plasma chloride and gill epithelial response of channel catfish to infection with Ichthyophthirius multifillis

Because infection with Ichthyophthirius multifiliis has been reported to result in osmotic stress, genesis of the plasma chloride and chloride cell response of channel catfish Ictalurus punctatus to the infection was studied from day 0 to day 7 postexposure (PE). Parasite population densities ranged from 0.08 to 0.22 trophonts per gill filament during days 1–5 PE and increased to 2.1 at day 7 PE. Population increases were the result of infection by a new generation of infective theronts and reproduction by the parasite on the host. Mean plasma chloride concentrations of fish were not significantly different among days 0–5 PE (range of means, 93.01–97.87 meq/L), but by day 7 PE the mean had declined significantly, to 83.73 meq/L. Maintenance of relatively stable plasma chloride concentrations for 5 d was associated with chloride cell proliferation. The number of interlamellar filament chloride cells had significantly increased by day 1 PE, and the number of chloride cells in the lamellae had significantly increased by day 5 PE. No further increase had occurred by day 7 PE. Vacuolization of chloride cells, examined by electron microscopy, became more common as infection progressed, and many chloride cells appeared to be degenerating by day 5 PE.

Journal of Aquatic Animal Health↗

Adherence of Myxobolus cerebralis myxospores to waders: Implications for disease dissemination

The vectors involved in the spread of whirling disease, which is caused by Myxobolus cerebralis, are only partly understood. However, the parasite has rapidly become established in many regions, suggesting that it is easily disseminated. We gained insight into transport vectors by examining the surface porosity of common wading equipment materials and the adherence of M. cerebralis myxospores to them. Interstitial spaces within rubber, felt, lightweight nylon, and neoprene were measured on scanning electron microscope images. Myxospores were applied to each material, the material was rinsed, and the myxospores recovered to assess adherence. The mean interstitial space size of rubber was the smallest (2.0 ??m), whereas that of felt was the largest (31.3 ??m). The highest recovery rates were from rubber and the glass control. Percent myxospore recovery varied by material, the recovery from felt being lower than that from all other materials. The potential for felt to carry even small numbers of myxospores suggests that the introduction of M. cerebralis by felt-soled wading boots is possible. ?? Copyright by the American Fisheries Society 2008.

North American Journal of Fisheries Management↗

A model for estimating passive integrated transponder (PIT) tag antenna efficiencies for interval-specific emigration rates

Our goal was to understand movement and its interaction with survival for populations of stream salmonids at long-term study sites in the northeastern United States by employing passive integrated transponder (PIT) tags and associated technology. Although our PIT tag antenna arrays spanned the stream channel (at most flows) and were continuously operated, we are aware that aspects of fish behavior, environmental characteristics, and electronic limitations influenced our ability to detect 100% of the emigration from our stream site. Therefore, we required antenna efficiency estimates to adjust observed emigration rates. We obtained such estimates by testing a full-scale physical model of our PIT tag antenna array in a laboratory setting. From the physical model, we developed a statistical model that we used to predict efficiency in the field. The factors most important for predicting efficiency were external radio frequency signal and tag type. For most sampling intervals, there was concordance between the predicted and observed efficiencies, which allowed us to estimate the true emigration rate for our field populations of tagged salmonids. One caveat is that the model's utility may depend on its ability to characterize external radio frequency signals accurately. Another important consideration is the trade-off between the volume of data necessary to model efficiency accurately and the difficulty of storing and manipulating large amounts of data.

Transactions of the American Fisheries Society↗

Verification of otolith identity used by fisheries scientists for aging channel catfish

Previously published studies of the age estimation of channel catfish Ictalurus punctatus based on otoliths have reported using the sagittae, whereas it is likely they were actually using the lapilli. This confusion may have resulted because in catfishes (ostariophyseans) the lapilli are the largest of the three otoliths, whereas in nonostariophysean fish the sagittae are the largest. Based on (1) scanning electron microscope microphotographs of channel catfish otoliths, (2) X-ray computed tomography scans of a channel catfish head, (3) descriptions of techniques used to removed otoliths from channel catfish reported in the literature, and (4) a sample of channel catfish otoliths received from fisheries biologists from around the country, it is clear that lapilli are most often used for channel catfish aging studies, not sagittae, as has been previously reported. Fisheries scientists who obtain otoliths from channel catfish can use the information in this paper to correctly identify otolith age.

Transactions of the American Fisheries Society↗

Toward a comprehensive information system to assist invasive species management in Hawaii and Pacific Islands

The need for coordinated regional and global electronic databases to assist prevention, early detection, rapid response, and control of biological invasions is well accepted. The Pacific Basin Information Node (PBIN), a node of the National Biological Information Infrastructure, has been increasingly engaged in the invasive species enterprise since its establishment in 2001. Since this time, PBIN has sought to support frontline efforts at combating invasions, through working with stakeholders in conservation, agriculture, forestry, health, and commerce to support joint information needs. Although initial emphasis has been on Hawaii, cooperative work with other Pacific islands and countries of the Pacific Rim is already underway and planned.

Weed Science↗

A shifting mosaic of scholarly publishing, scientific delivery, and future impact changing the face of learned societies

Nonprofit scientific societies hope that their activities advance their particular mission and impact their profession and, in the broadest sense, humanity in positive ways. The digital age has provided unprecedented mechanisms to enhance the delivery of science to the world. The marketplace of scientific publishing is a rapidly shifting mosaic of challenges and opportunities, and the responses of nonprofit and commercial publishers vary widely, but their outcomes are still uncertain. The response of the American Society of Mammalogists (ASM) provides an example of how a relatively small society has altered its scientific delivery to enhance member benefits while attempting to sustain its economic viability. Since 2000, ASM has moved from a self-publishing, break-even, print-only model to a copublishing agreement with a commercial publisher (Alliance Communications Group, a division of Allen Press, Inc., Lawrence, Kansas), which now offers members various print and electronic options and generates a shared royalty. Although it is too early to gauge the economic impact of these changes, the ASM leadership clearly attempted to signal its desire for members to view their society as a package of opportunities for edification and involvement rather than just a provider of serial subscriptions. Future challenges facing nonprofit scientific societies include open access, fiscal realities, archiving of publications, and scientific and societal impact; future opportunities include a strengthening of member responsibilities and professionalism, development of data registries to enhance scientific progress, and bundling of like societies. The manner in which nonprofit scientific societies respond to these challenges and opportunities will no doubt affect their sustainability and future impact. ?? 2007 American Society of Mammalogists.

Journal of Mammalogy↗

An inexpensive method for quantifying incubation patterns of open-cup nesting birds, with data for black-throated Blue warblers

Quantifying incubation patterns has often involved long observation periods in the field, video cameras, or the use of other electronic devices that sometimes require the partial destruction of clutches and insertion of artificial eggs. In this study, we used an inexpensive, nondestructive method involving temperature probes combined with data loggers to examine the incubation rhythm of female Black-throated Blue Warblers ( Dendroica caerulescens ). The method provided detailed records of on–off patterns for females for selected 24-h periods during incubation. Female warblers spent an average (±SE) of 64.0% of daylight hours incubating in bouts lasting 20.5 ± 1.5 min and made 2.4 ± 0.1 departures from the nest/h on trips that lasted 10.6 ± 0.7 min. Incubation bouts were longer and females spent more time incubating per hour in the mornings and late afternoons than at mid-day. Older females had longer incubation bouts and tended to have shorter incubation periods than did yearling females, suggesting that experienced individuals were more effective incubators. Because of its ease of use and because nests with probes were not depredated at a higher rate than controls, we suggest that the temperature probe/data logger method is an efficient and effective way to quantify incubation rhythms for open-cup nesting birds.

Journal of Field Ornithology↗

Distribution of glacial deposits, soils, and permafrost in Taylor Valley, Antarctica

We provide a map of lower and central Taylor Valley, Antarctica, that shows deposits from Taylor Glacier, local alpine glaciers, and grounded ice in the Ross Embayment. From our electronic database, which includes 153 sites from the coast 50 km upvalley to Pearse Valley, we show the distribution of permafrost type and soil subgroups according to Soil Taxonomy. Soils in eastern Taylor Valley are of late Pleistocene age, cryoturbated due to the presence of ground ice or ice-cemented permafrost within 70 cm of the surface, and classified as Glacic and Typic Haploturbels. In central Taylor Valley, soils are dominantly Typic Anhyorthels of mid-Pleistocene age that have dry-frozen permafrost within the upper 70 cm. Salt-enriched soils (Salic Anhyorthels and Petrosalic Anhyorthels) are of limited extent in Taylor Valley and occur primarily on drifts of early Pleistocene and Pliocene age. Soils are less developed in Taylor Valley than in nearby Wright Valley, because of lesser salt input from atmospheric deposition and salt weathering. Ice-cemented permafrost is ubiquitous on Ross Sea, pre-Ross Sea, and Bonney drifts that occur within 28 km of the McMurdo coast. In contrast, dry-frozen permafrost is prevalent on older (???115 ky) surfaces to the west. ?? 2008 Regents of the University of Colorado.

Arctic, Antarctic, and Alpine Research↗

Casual instrument corrections for short-period and broadband seismometers

Of all the filters applied to recordings of seismic waves, which include source, path, and site effects, the one we know most precisely is the instrument filter. Therefore, it behooves seismologists to accurately remove the effect of the instrument from raw seismograms. Applying instrument corrections allows analysis of the seismogram in terms of physical units (e.g., displacement or particle velocity of the Earth’s surface) instead of the output of the instrument (e.g., digital counts). The instrument correction can be considered the most fundamental processing step in seismology since it relates the raw data to an observable quantity of interest to seismologists. Complicating matters is the fact that, in practice, the term “instrument correction” refers to more than simply the seismometer. The instrument correction compensates for the complete recording system including the seismometer, telemetry, digitizer, and any anti‐alias filters. Knowledge of all these components is necessary to perform an accurate instrument correction. The subject of instrument corrections has been covered extensively in the literature (Seidl, 1980; Scherbaum, 1996). However, the prospect of applying instrument corrections still evokes angst among many seismologists—the authors of this paper included. There may be several reasons for this. For instance, the seminal paper by Seidl (1980) exists in a journal that is not currently available in electronic format and cannot be accessed online. Also, a standard method for applying instrument corrections involves the programs TRANSFER and EVALRESP in the Seismic Analysis Code (SAC) package (Goldstein et al. , 2003). The exact mathematical methods implemented in these codes are not thoroughly described in the documentation accompanying SAC.

Seismological Research Letters↗

Metrics for comparing dynamic earthquake rupture simulations

Earthquakes are complex events that involve a myriad of interactions among multiple geologic features and processes. One of the tools that is available to assist with their study is computer simulation, particularly dynamic rupture simulation. A dynamic rupture simulation is a numerical model of the physical processes that occur during an earthquake. Starting with the fault geometry, friction constitutive law, initial stress conditions, and assumptions about the condition and response of the near‐fault rocks, a dynamic earthquake rupture simulation calculates the evolution of fault slip and stress over time as part of the elastodynamic numerical solution (Ⓔ see the simulation description in the electronic supplement to this article). The complexity of the computations in a dynamic rupture simulation make it challenging to verify that the computer code is operating as intended, because there are no exact analytic solutions against which these codes’ results can be directly compared. One approach for checking if dynamic rupture computer codes are working satisfactorily is to compare each code’s results with the results of other dynamic rupture codes running the same earthquake simulation benchmark. To perform such a comparison consistently, it is necessary to have quantitative metrics. In this paper, we present a new method for quantitatively comparing the results of dynamic earthquake rupture computer simulation codes.

Seismological Research Letters↗

The 21 May 2014 M w 5.9 Bay of Bengal earthquake: macroseismic data suggest a high‐stress‐drop event

A modest but noteworthy M w 5.9 earthquake occurred in the Bay of Bengal beneath the central Bengal fan at 21:51 Indian Standard Time (16:21 UTC) on 21 May 2014. Centered over 300 km from the eastern coastline of India (Fig. 1), it caused modest damage by virtue of its location and magnitude. However, shaking was very widely felt in parts of eastern India where earthquakes are uncommon. Media outlets reported as many as four fatalities. Although most deaths were blamed on heart attacks, the death of one woman was attributed by different sources to either a roof collapse or a stampede (see Table S1, available in the electronic supplement to this article). Across the state of Odisha, as many as 250 people were injured (see Table S1), most after jumping from balconies or terraces. Light damage was reported from a number of towns on coastal deltaic sediments, including collapsed walls and damage to pukka and thatched dwellings. Shaking was felt well inland into east‐central India and was perceptible in multistoried buildings as far as Chennai, Delhi, and Jaipur at distances of ≈1600  km (Table 1).

Seismological Research Letters↗

A collection of historic seismic instrumentation photographs at the Albuquerque Seismological Laboratory

The Albuquerque Seismological Laboratory (ASL) has preserved a collection of photographs of seismographic equipment, stations, and drawings used by the United States Coast and Geodetic Survey (USC&GS) in the early-to-mid-twentieth century. The photographs were transferred to ASL from the US Department of Commerce building in Washington DC after ASL became established as a USC&GS facility for seismological research and instrumentation testing in 1961. The photographs were variously used in publications to document USC&GS activities or used internally to document instrument installation, operation, and/or components. The historic photograph collection is made up of hundreds of photographs that were originally printed in the 1930s and 1940s. Our hope is that the archival of these records, as well as brief descriptions about their significance, will help preserve some of the knowledge about seismological advances in the United States during this time period. We provide digital scans of the complete ASL historic photo collection and discuss the historical context of select images in the Electronic Supplement of this document.

Seismological Research Letters↗

Introduction to the digitization of seismic data: A user’s guide

Modern seismic data are collected, distributed, and analyzed using digital formats, and this has become a standard for the field. Although most modern seismometers still make use of analog electronic circuits, their data are converted from an analog voltage output to time‐tagged counts by way of digitization. Although much of the digitization process is not complicated to conceptualize, there is a fair bit of jargon in digitizer specifications, and a few pitfalls that can arise in the processes of recording and analyzing ground‐motion data. In this article, we review some of the fundamental physical properties of data acquisition systems and the basic steps in digitizing data from an analog instrument (specifically a seismometer). We then briefly discuss the digitization process and some of the key properties needed to make these data useful for seismological applications. Finally, we discuss some of the filtering processes that naturally arise from digitization and how it can affect the processing workflow. The end goal is to provide a user guide that will enable seismologists to have a working knowledge of the digitization process. We focus on aspects central to seismological applications and have tried to avoid getting bogged down in signal processing formalism.

Seismological Research Letters↗

One minute after: Strong-motion map, effective epicenter, and effective magnitude

This article reports the recent progress on real-time seismic monitoring in Taiwan, particularly the real-time strong-motion monitoring by the Taiwan Central Weather Bureau's telemetered seismic network ( CWBSN ), which is presently aiming at rapid reporting immediately after a large earthquake occurrence. If rapid reporting can be achieved before the arrival of the strong shaking, earthquake early warning will become possible. CWBSN has achieved the generation of the intensity map, epicenter, and magnitude within 1 min of the occurrence of a large earthquake. Both rapid reporting and early warning are principally applied to large ( M ≫ 5) events; the requirement of on-scale waveform recording prompted CWBSN in 1995 to integrate strong-motion sensors (e.g., force-balance accelerometers) into its telemetered seismic monitoring system. Time-domain recursive processing is applied to the multi-channel incoming seismic signals by a group of networked personal computers to generate the intensity map. From the isoseismal contours, an effective epicenter is immediately identified that resides in the middle of the largest (usually the 100-gal) contour curve of the intensity map. An effective magnitude is also defined that can be derived immediately from the surface area covered by the largest (usually the 100-gal) contour curve. For a large event with a finite rupture surface, the epicenter and magnitude so derived are more adequate estimates of the source location and of the strength of destruction. The effective epicenter gives the center of the damage area; it stands in contrast with the conventional epicenter location, which only gives the initial point of rupture nucleation. The effective magnitude reflects more closely the earthquake damage potential, instead of the classical magnitude definition that emphasizes the total energy release. The CWBSN has achieved in obtaining the above crucial source information well within 1 min. This time can further be reduced to better than 30 sec, as illustrated by the example in this article, showing that earthquake early warning is indeed an achievable goal. The rapid reporting and early warning information is electronically transmitted to users to allow rapid response actions, with or without further human intervention.

Bulletin of the Seismological Society of America↗

Performance of the Taiwan Rapid Earthquake Information Release System (RTD) during the 1999 Chi-Chi (Taiwan) Earthquake

A major earthquake occurred near the town of Chi-Chi in Nantou County, Taiwan, at 1:47 am (local time), 21 September 1999, about 150 km south of Taipei. This is the largest earthquake to have occurred on land in Taiwan during the 20th century. Although Taiwan has an earthquake building code, thousands of buildings collapsed due to the earthquake, leaving more than 100,000 people homeless. The death toll exceeded 2,300 with more than 10,000 injured. Within 102 seconds after the earthquake's origin time, a good estimate of the hypocenter (23.87° N, 120.75° E, Depth = 10 km) and magnitude ( M L = 7.3), and a shaking map were determined automatically by the RTD system. The result was immediately disseminated to governmental emergency response agencies electronically in four ways, by e-mail, World Wide Web, fax, and pager. This rapid information system has been successfully operating in Taiwan for more than four years. During the Chi-Chi earthquake, the rapid availability of earthquake information facilitated the emergency response. The RTD system worked very well throughout the whole aftershock sequence (several aftershocks had local magnitude of 6 or larger). Again this timely information was useful to the emergency response teams. In this paper, we briefly describe the RTD system and summarize its performance during the Chi-Chi earthquake.

Seismological Research Letters↗

Rapid distribution of earthquake information for everybody

No matter who you are, seismologist or regular person on the street, when you feel the Earth move you want to know what's going on. Was it an earthquake? Where was the earthquake? How big was it? As a grad student, many moons ago, when the Earth moved, the Electronic Seismologist (ES) was known to immediately turn on the “AM/FM-Automatic-Earthquake-Locator.” Before the seismograms could be pulled off the photographic drums, developed, and read and an “official” hypocenter determined (using a large map and a piece of string to swing arcs), the radio would usually have reported a location. Individuals feeling the earthquake would have called radio and TV stations (not to mention the police, newspapers, and sometimes the seismograph station), reported feeling something, and described what it was like. Reporters taking these calls got pretty good at estimating roughly where the event was, and they sometimes came up with a fairly good estimate of the magnitude. This seat-of-the-pants radio-seismology is fast becoming a lost art. Reporters now race to their computers and point their Web browsers at the nearest seismic network where they can count on finding, within minutes, an automatic but “official” location and magnitude for the earthquake.

Seismological Research Letters↗

Developing seismogenic source models based on geologic fault data

Calculating seismic hazard usually requires input that includes seismicity associated with known faults, historical earthquake catalogs, geodesy, and models of ground shaking. This paper will address the input generally derived from geologic studies that augment the short historical catalog to predict ground shaking at time scales of tens, hundreds, or thousands of years (e.g., SSHAC 1997). A seismogenic source model, terminology we adopt here for a fault source model, includes explicit three-dimensional faults deemed capable of generating ground motions of engineering significance within a specified time frame of interest. In tectonically active regions of the world, such as near plate boundaries, multiple seismic cycles span a few hundred to a few thousand years. In contrast, in less active regions hundreds of kilometers from the nearest plate boundary, seismic cycles generally are thousands to tens of thousands of years long. Therefore, one should include sources having both longer recurrence intervals and possibly older times of most recent rupture in less active regions of the world rather than restricting the model to include only Holocene faults (i.e., those with evidence of large-magnitude earthquakes in the past 11,500 years) as is the practice in tectonically active regions with high deformation rates. During the past 15 years, our institutions independently developed databases to characterize seismogenic sources based on geologic data at a national scale. Our goal here is to compare the content of these two publicly available seismogenic source models compiled for the primary purpose of supporting seismic hazard calculations by the Istituto Nazionale di Geofisica e Vulcanologia (INGV) and the U.S. Geological Survey (USGS); hereinafter we refer to the two seismogenic source models as INGV and USGS, respectively. This comparison is timely because new initiatives are emerging to characterize seismogenic sources at the continental scale (e.g., SHARE in the Euro-Mediterranean, http://www.share-eu.org/; EMME in the Middle East, http://www.emme-gem.org/) and global scale (e.g., GEM, http://www.globalquakemodel.org/; Anonymous 2008). To some extent, each of these efforts is still trying to resolve the level of optimal detail required for this type of compilation. The comparison we provide defines a common standard for consideration by the international community for future regional and global seismogenic source models by identifying the necessary parameters that capture the essence of geological fault data in order to characterize seismogenic sources. In addition, we inform potential users of differences in our usage of common geological/seismological terms to avoid inappropriate use of the data in our models and provide guidance to convert the data from one model to the other (for detailed instructions, see the electronic supplement to this article). Applying our recommendations will permit probabilistic seismic hazard assessment codes to run seamlessly using either seismogenic source input. The USGS and INGV database schema compare well at a first-level inspection. Both databases contain a set of fields representing generalized fault three-dimensional geometry and additional fields that capture the essence of past earthquake occurrences. Nevertheless, there are important differences. When we further analyze supposedly comparable fields, many are defined differently. These differences would cause anomalous results in hazard prediction if one assumes the values are similarly defined. The data, however, can be made fully compatible using simple transformations.

Seismological Research Letters↗

Return rates of GPS-tagged Pacific Golden-Plovers: A controlled study in Hawaii

In a study of GPS-tagged Pacific Golden-Plovers wintering at Moorea, French Polynesia, Johnson et al. (2020) raised questions about possible tag-induced mortality. Similar concerns in other species have generated considerable attention in recent years. Of 19 tagged plovers that departed Moorea on northward migration, only one bird (5 %) uploaded a complete migratory cycle to Argos. Furthermore, contact was lost with 12 birds (63 %) variously during overwater flight, at stopover sites, or on nesting grounds; and no signals at all were received from 6 individuals (32%). Such observations suggest that carrying a tag might be a life-threatening burden. We cannot exclude the possibility that tag weight caused difficulties for the Moorea birds. However, this seems an unlikely factor in that the device (tag plus harness) being carried weighed less than 3 % of body mass (see beyond). Such a load is in accord with generally accepted albeit arbitrary limits. Other tag-associated concerns such as altered aerodynamics, increased vulnerability to predation, and (given the complex nature of geomagnetic navigation, the possibility that tag electronics might interfere with sense of direction, are more difficult to evaluate. Alternatively, loss of contact with tagged birds may be simply a matter of tag malfunction, battery failure, or a broken harness. To shed light on these uncertainties, and to explore the survival of GPS-tagged plovers on a nonbreeding ground in Hawaii, we conducted a controlled study using birds that winter in the National Memorial Cemetery of the Pacific (known locally as the Punchbowl).

Hawaii↗