Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Animals”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 901 records · Page 50Linked to original sources
USGS2018

Native peoples’ relationship to the California chaparral

Ethnographic interviews and historical literature reviews provide evidence that for many tribes of California, chaparral plant communities were a rich source of food, medicines, and technologies and that they supplemented natural fires with deliberate burning of chaparral to maximize its ability to produce useful products. Many of the most important chaparral plant species used in the food and material culture have strong adaptations to fire. Particularly useful were many annual and perennial herbs, which proliferate after fire from seed and bulb banks, shrub resprouts that made superb cordage and basketry material, as well as animals that were more readily caught in postfire environments. The reasons for burning in chaparral are grouped into seven ecological categories, each relying on a known response to fire of the chaparral community. The authors posit that tribes employed intentional burning to maintain chaparral in different ages and size classes to meet diverse food and material needs, tracking the change in plant and animal abundance and diversity, and shifts in shrub architecture and habitat structure during the recovery of the chaparral community. Areas were burned in ways designed to create a mosaic of open grassland and recently burned, young and mature stands of chaparral with different combinations of species and densities. This management conferred on chaparral plant communities a degree of spatial, structural, successional, and biotic diversity that exceeded what would have been the case in the absence of human intervention. These impacts are still evident on contemporary landscapes.

California↗
USGS2018

Extending the habitat concept to the airspace

Habitat is one of the most familiar and fundamental concepts in the fields of ecology, animal behavior, and wildlife conservation and management. Humans interact with habitats through their senses and experiences and education to such a degree that their perceptions of habitat have become second nature. For this reason, it may be difficult at first to accept the airspace as habitat, an area that is invisible, untouchable, highly dynamic, and its occupants difficult to see. Nonetheless, the habitat concept, by definition and in practice, applies readily to the airspace. Some ecological and behavioral processes including habitat selection, foraging, and reproduction are operational in the airspace, while others, particularly those mediated by resource limitation such as territoriality, are likely uncommon if present at all. The behaviors of flying animals increasingly expose them to anthropogenic hazards as development of the airspace accelerates. This exacerbates the need to identify approaches for managing these human–wildlife conflicts in aerial habitats, especially where human safety or at-risk populations are concerned. The habitat concept has proven useful in shaping environmental law and policy to help mitigate these conflicts. It remains to be seen whether current law can bend to include a more expansive concept of habitat that includes the airspace.

Book chapter↗
USGS2016

Coral calcification and ocean acidification

Over 60 years ago, the discovery that light increased calcification in the coral plant-animal symbiosis triggered interest in explaining the phenomenon and understanding the mechanisms involved. Major findings along the way include the observation that carbon fixed by photosynthesis in the zooxanthellae is translocated to animal cells throughout the colony and that corals can therefore live as autotrophs in many situations. Recent research has focused on explaining the observed reduction in calcification rate with increasing ocean acidification (OA). Experiments have shown a direct correlation between declining ocean pH, declining aragonite saturation state (Ωarag), declining [CO32_] and coral calcification. Nearly all previous reports on OA identify Ωarag or its surrogate [CO32] as the factor driving coral calcification. However, the alternate “Proton Flux Hypothesis” stated that coral calcification is controlled by diffusion limitation of net H+ transport through the boundary layer in relation to availability of dissolved inorganic carbon (DIC). The “Two Compartment Proton Flux Model” expanded this explanation and synthesized diverse observations into a universal model that explains many paradoxes of coral metabolism, morphology and plasticity of growth form in addition to observed coral skeletal growth response to OA. It is now clear that irradiance is the main driver of net photosynthesis (Pnet), which in turn drives net calcification (Gnet), and alters pH in the bulk water surrounding the coral. Pnet controls [CO32] and thus Ωarag of the bulk water over the diel cycle. Changes in Ωarag and pH lag behind Gnet throughout the daily cycle by two or more hours. The flux rate Pnet, rather than concentration-based parameters (e.g., Ωarag, [CO3 2], pH and [DIC]:[H+] ratio) is the primary driver of Gnet. Daytime coral metabolism rapidly removes DIC from the bulk seawater. Photosynthesis increases the bulk seawater pH while providing the energy that drives calcification and increases in Gnet. These relationships result in a correlation between Gnet and Ωarag, with both parameters being variables dependent on Pnet. Consequently the correlation between Gnet and Ωarag varies widely between different locations and times depending on the relative metabolic contributions of various calcifying and photosynthesizing organisms and local rates of carbonate dissolution. High rates of H+ efflux continue for several hours following the mid-day Gnet peak suggesting that corals have difficulty in shedding waste protons as described by the Proton Flux Model. DIC flux (uptake) tracks Pnet and Gnet and drops off rapidly after the photosynthesis-calcification maxima, indicating that corals can cope more effectively with the problem of limited DIC supply compared to the problem of eliminating H+. Predictive models of future global changes in coral and coral reef growth based on oceanic Ωarag must include the influence of future changes in localized Pnet on Gnet as well as changes in rates of reef carbonate dissolution. The correlation between Ωarag and Gnet over the diel cycle is simply the result of increasing pH due to photosynthesis that shifts the CO2-carbonate system equilibria to increase [CO32] relative to the other DIC components of [HCO3] and [CO2]. Therefore Ωarag closely tracks pH as an effect of Pnet, which also drives changes in Gnet. Measurements of DIC flux and H+ flux are far more useful than concentrations in describing coral metabolism dynamics. Coral reefs are systems that exist in constant disequilibrium with the water column.

Book chapter↗
USGS1994

Acute toxicity and hazard assessment of Rodeo®, X-77 Spreader®, and Chem-Trol® to aquatic invertebrates

The herbicide Rodeo ® provides waterfowl managers with an effective chemical tool for creating open water habitats in wetlands if its use does not adversely affect native invertebrate communities. The survival of caged Chironomus spp. (midge), Hyalella azteca (amphipod), Stagnicola elodes (pond snail), and Nephelopsis obscura (leech) was assessed in prairie pothole wetlands treated by air with a tank mixture of Rodeo ® , the surfactant X-77 Spreader ® , and the drift retardant Chem-Trol ® at a rate recommended for controlling cattails. Laboratory studies were then conducted to determine the acute toxicities of Rodeo ® , X-77 Spreader ® , and Chem-Trol ® , individually and in simulated tank mixtures, to the same invertebrates and to Daphnia magna in reconstituted water representative of these wetlands. There was no difference in the survival of caged invertebrates between treated and reference wetlands after 21 days. Based on nominal concentrations of the formulations, X-77 Spreader ® (LC50s=2.0–14.1 mg/L) was about 83–136 times more toxic than Rodeo ® (LC50s=218–1216 mg/L) to aquatic invertebrates. Chem-Trol ® killed ≤10% of the animals at 10,000 mg/L and ≤50% of the animals at 28,000 mg/L. Daphnia magna were more sensitive than the other species to X-77 Spreader ® , Rodeo ® , and the simulated Rodeo ® tank mixture (RTM). The joint toxic action of the RTM was additive for amphipods and midges, greater than additive for leeches, and was less than additive for daphnids. X-77 Spreader ® was the major toxic component in the RTM. Binary mixtures of X-77 Spreader ® , Rodeo ® , and Chem-Trol ® at tank mixture and equitoxic ratios also showed additive toxicity to amphipods. The use of Rodeo ® (applied as a tank mixture with X-77 Spreader ® and Chem-Trol ® ) as a management tool in wetlands does not pose an acute hazard to native aquatic invertebrates because the concentrations of Rodeo ® , X-77 Spreader ® , and Chem-Trol ® found to be acutely toxic to these invertebrates were much higher than their expected or measured concentrations in water from wetlands treated with the RTM.

Archives of Environmental Contamination and Toxico↗
USGS1987

Selenium in aquatic organisms from subsurface agricultural drainage water, San Joaquin Valley, California

Concentrations of total selenium were high in 1983 in water, sediment, organic detritus, aquatic plants and invertebrates, and mosquitofish ( Gambusia affinis ) from Kesterson Reservoir (San Joaquin Valley, California) and the San Luis Drain. Selenium concentrations in biota from the Reservoir and Drain (referred to here collectively as “Kesterson”) exceeded 300 (μg/g dry weight in some samples of algae, submerged rooted plants, chironomids, and mosquitofish, and were as high as 440 μg/g dry weight in decomposing detritus. Overall, selenium concentrations in samples from Kesterson averaged about 100-fold higher than those from the Volta Wildlife Area (here termed “Volta”), a nearby site that does not receive subsurface drainage water. Selenium concentrations generally increased from water to sediment to plants to animals. Spatial (geographic) patterns were observed for selenium concentrations in samples from Kesterson, but not in those from Volta. Higher concentrations were usually measured in samples from the San Luis Drain than from the evaporation ponds that comprise Kesterson Reservoir. At Kesterson, concentrations were usually higher in August than in May. The elevated levels of selenium measured in forage organisms from Kesterson are probably toxic to sensitive consumer animals, and may explain recent observations of dead and deformed embryos in eggs of aquatic birds that nest at the Reservoir. The effects of the selenium on fish living in subsurface agricultural drainage water are still poorly understood.

California↗
USGS1979

Parathion causes secondary poisoning in a laughing gull breeding colony

Use of organophosphate insecticides as replacements for the more persistent organochlorine compounds has increased dramatically in recent years. Organophosphates are desirable for field application because they break down rapidly in the environment and do not persist in animal tissues (Stickel 1974). Nevertheless, certain organophosphates are extremely toxic to wildlife for short periods after application and have caused widespread mortality among exposed animals (Mills 1973, Stickel 1974, 1975, Mendelssohn 1977, and Zinkl et al. 1978).

Texas↗
USGS1984

Volatile constituents of wolf (Canis lupus) urine as related to gender and season

The volatile constituents of wolf urine were examined via capillary gas chromatography and compared among male, female, and castrate male. Several compounds including methyl isopentyl sulfide, 3,5-dimethyl-2-octanone, and acetophenone were clearly associated with the gender of the animal and many displayed a seasonal dependence. In addition, 2 long-chain aldehydes isolated from urine samples by an HPLC procedure also correlated with the endocrine status of the animal.

Experientia↗
USGS1976

Capturing and marking howler monkeys for field behavioral studies

Methods for capturing and marking howler monkeys for ecological studies are discussed. Systems for capturing and handling animals are compared. A dart with liquid Sernylan for capture and Sernylan or Ketamine as a holding drug was preferred to darts using powdered succinylcholine chloride (SCC) and ether. The effectiveness of both Sernylan and SCC is compared and dosages are given for Sernylan in howler monkeys and SCC for howlers and capuchins. The advantages of Ketamine over ether as a holding drug are discussed. Animals can be marked with leg-bands, collars, and freeze-branding.

Primates↗
USGS2024

Carotenoid skin ornaments as flexible indicators of male foraging behavior in a marine predator: Variation among Mexican colonies of brown booby (Sula leucogaster)

Carotenoid-dependent ornaments can reflect animals’ diet and foraging behaviors. However, this association should be spatially flexible and variable among populations to account for geographic variation in optimal foraging behaviors. We tested this hypothesis using populations of a marine predator (the brown booby, Sula leucogaster ) that forage across a gradient in ocean depth in and near the Gulf of California. Specifically, we quantified green chroma for two skin traits (foot and gular color) and their relationship to foraging location and diet of males, as measured via global positioning system tracking and stable carbon isotope analysis of blood plasma. Our three focal colonies varied in which foraging attributes were linked to carotenoid-rich ornaments. For gular skin, our data showed a shift from a benthic prey-green skin association in the shallow waters in the north to a pelagic prey-green skin association in the deepest waters to the south. Mean foraging trip duration and distance of foraging site from coast also predicted skin coloration in some colonies. Finally, brown booby colonies varied in which trait (foot versus gular skin color) was associated with foraging metrics. Overall, our results indicate that male ornaments reflect quality of diet and foraging–information that may help females select mates who are adapted to local foraging conditions and therefore, are likely to provide better parental care. More broadly, our results stress that diet-dependent ornaments are closely linked to animals’ environments and that we cannot assume ornaments or ornament signal content are ubiquitous within species, even when ornaments appear similar among populations.

Marine Biology↗
USGS2015

Evaluating hair as a predictor of blood mercury: the influence of ontogenetic phase and life history in pinnipeds

Mercury (Hg) biomonitoring of pinnipeds increasingly utilizes nonlethally collected tissues such as hair and blood. The relationship between total Hg concentrations ([THg]) in these tissues is not well understood for marine mammals, but it can be important for interpretation of tissue concentrations with respect to ecotoxicology and biomonitoring. We examined [THg] in blood and hair in multiple age classes of four pinniped species. For each species, we used paired blood and hair samples to quantify the ability of [THg] in hair to predict [THg] in blood at the time of sampling and examined the influence of varying ontogenetic phases and life history of the sampled animals. Overall, we found that the relationship between [THg] in hair and blood was affected by factors including age class, weaning status, growth, and the time difference between hair growth and sample collection. Hair [THg] was moderately to strongly predictive of current blood [THg] for adult female Steller sea lions (Eumetopias jubatus), adult female California sea lions (Zalophus californianus), and adult harbor seals (Phoca vitulina), whereas hair [THg] was poorly predictive or not predictive (different times of year) of blood [THg] for adult northern elephant seals (Mirounga angustirostris). Within species, except for very young pups, hair [THg] was a weaker predictor of blood [THg] for prereproductive animals than for adults likely due to growth, variability in foraging behavior, and transitions between ontogenetic phases. Our results indicate that the relationship between hair [THg] and blood [THg] in pinnipeds is variable and that ontogenetic phase and life history should be considered when interpreting [THg] in these tissues.

Archives of Environmental Contamination and Toxico↗
USGS2000

Toxicity of manganese to Ceriodaphnia dubia and Hyalella azteca

Manganese is a toxic element frequently overlooked when assessing toxicity of effluents, sediments, and pore waters. Manganese can be present at toxic levels in anoxic solutions due to increased solubility under chemically reducing conditions, and it can remain at those levels for days in aerated test waters due to slow precipitation kinetics. Ceriodaphnia dubia and Hyalella azteca are freshwater organisms often used for toxicity testing and recommended for assessments of effluents and pore waters. Lethal and reproductive-inhibition concentrations of Mn were determined for C. dubia in acute 48-h tests and chronic three-brood tests using animals <24 h old and between 24 and 48 h old. Sensitivity of H. azteca to Mn was determined with 7-day-old animals in acute 96-h tests. Tests were run at three levels of water hardness to assess the amelioratory effect, which was often significant. Manganese concentrations were measured analytically at test initiation and after 96 h for calculation of toxicity and determination of Mn precipitation during the tests. Minimal amounts of Mn (≤3%) precipitated within 96 h. LC 50 s determined for H. azteca progressively increased from 3.0 to 8.6 to 13.7 mg Mn/L in soft, moderately hard, and hard waters, respectively. The tolerance of C. dubia to Mn was not significantly different between moderately hard and hard waters, but was significantly lower in soft water. Manganese sensitivity of C. dubia was not significantly different between the ages tested. Acute LC 50 values for C. dubia averaged 6.2, 14.5 and 15.2 mg Mn/L and chronic IC 50 values averaged 3.9, 8.5 and 11.5 mg Mn/L for soft, moderately-hard and hard waters, respectively. Manganese toxicity should be considered when assessing solutions with concentrations approaching these levels.

Archives of Environmental Contamination and Toxico↗
USGS2022

Daily foraging activity of an imperiled ground squirrel: Effects of hibernation, thermal environment, body condition, and conspecific density

Food acquisition is among the most important tasks faced by free-ranging animals. Predation and thermal risks, however, can make foraging a costly endeavor and foraging can preclude other important activities. Moreover, seasonal life cycle events such as hibernation impose energetic thresholds and time constraints on foraging. These factors interact with an animal’s endogenous state to influence foraging behavior. We tested a suite of predictions based on foraging theory to explore the effects of thermal environment, body condition, and conspecific density on aboveground activity (which is primarily foraging activity) of the northern Idaho ground squirrel ( Urocitellus brunneus ), an imperiled rodent that hibernates for 9 months each year. We took advantage of the squirrels’ semi-fossorial lifestyle to document daily aboveground activity by attaching geolocators to squirrels. We modeled squirrel activity with generalized linear mixed-effects models to document the relative importance of thermal environment, body condition, and conspecific density for daily aboveground activity. Aboveground activity by northern Idaho ground squirrels increased throughout their active season and leaner squirrels increased their activity more than heavier squirrels as residual foraging opportunities diminished. Thermal conditions also influenced squirrel activity: squirrels spent less time above ground during extreme temperatures and on days with significant precipitation. Aboveground activity of northern Idaho ground squirrels largely adhered to predictions of risk-sensitive and state-dependent foraging theory. Management actions that enhance forage will likely improve the probability of recovery for this federally threatened species by minimizing trade-offs squirrels need to make to acquire sufficient food to survive hibernation and reproduce in subsequent years.

Behavioral Ecology and Sociobiology↗
USGS2005

Characterizing lesions in corals from American Samoa

The study of coral disease has suffered from an absence of systematic approaches that are commonly used to determine causes of diseases in animals. There is a critical need to develop a standardized and portable nomenclature for coral lesions in the field and to incorporate more commonly available biomedical tools in coral disease surveys to determine the potential causes of lesions in corals. We characterized lesions in corals from American Samoa based on gross and microscopic morphology and classified them as discoloration, growth anomalies, or tissue loss. The most common microscopic finding in corals manifesting discoloration was the depletion of zooxanthellae, followed by necrosis, sometimes associated with invasive algae or fungi. The most common microscopic lesion in corals manifesting tissue loss was cell necrosis often associated with algae, fungi, or protozoa. Corals with growth anomaly had microscopic evidence of hyperplasia of gastrovascular canals, followed by necrosis associated with algae or metazoa (polychaete worms). Several species of apparently normal corals also had microscopic changes, including the presence of bacterial aggregates or crustacea in tissues. A single type of gross lesion (e.g., discoloration) could have different microscopic manifestations. This phenomenon underlines the importance of using microscopy to provide a more systematic description of coral lesions and to detect potential pathogens associated with these lesions.

Coral Reefs↗
USGS2025

Avian navigation: Comparing the olfactory navigational “map” and the infrasound direction-finding hypotheses to aeronautics

Animal navigation has long been a fascinating but bewildering subject. Humans and animals might well share similar navigational strategies because they developed within the same physical environments. A “map-and-compass” model has been proposed to explain the two-step avian navigational process, but the “map” step has remained elusive. Although scalar values from bicoordinate geomagnetic or atmospheric olfactory gradients have been considered foundational to the avian map, neither has proved convincing engendering decades of controversy. The olfactory map, and an alternative infrasound direction-finding (IDF) hypothesis, are discussed in this review. The olfactory map hypothesis currently requires extensive stable gradients of trace-odor ratios, but such gradients are highly unlikely within a turbulent and rapidly mixed lower atmosphere. The IDF hypothesis, on the other hand, postulates a two-step navigational model analogous to the maritime and aeronautical radio direction-finding technique. This review was also written to encourage further investigation, and direct testing, of the acoustic navigational process. The IDF hypothesis, at present, appears the better explanation of observed avian navigational behavior and accuracy within the atmosphere’s physical environment.

Journal of Comparative Physiology A↗
USGS1999

Cutaneous mastocytomas in the neotenic caudate amphibians Ambystoma mexicanum (axolotl) and Ambystoma tigrinum (tiger salamander)

Spontaneous mastocytomas studied in 18 axolotls ( Ambystoma mexicanum ) and six tiger salamanders ( Ambystoma tigrinum ) were gray-white, uni- to multilobular cutaneous protrusions from 2 mm to 2 cm in diameter. Tumors were moderately cellular unencapsulated masses that usually infiltrated the dermis and hypodermis with the destruction of intervening tissues. Some tumors were invading superficial bundles of the underlying skeletal muscle. Tumors consisted of mitotically active cells derived from a single lineage but showing a range of differentiation. Immature cells had nearly smooth to lightly cleft or folded basophilic nuclei bordered by a band of cytoplasm with few cytoplasmic processes and containing a few small uniform eccentric granules. Mature cells had basophilic nuclei with deep clefts or folds and abundant eosinophilic cytoplasm with multiple long intertwining cytoplasmic extensions packed with metachromatic granules. The axolotls were old individuals from an inbred laboratory colony. The tiger salamanders were wild animals from a single polluted pond. They could have been old and inbred. Both groups were neotenic. These are the first mastocytomas discovered in cold-blooded animals.

Texas↗
USGS2006

Can parasites be indicators of free-living diversity? Relationships between species richness and the abundance of larval trematodes and of local benthos and fishes

Measuring biodiversity is difficult. This has led to efforts to seek taxa whose species richness correlates with the species richness of other taxa. Such indicator taxa could then reduce the time and cost of assessing the biodiversity of the more extensive community. The search for species richness correlations has yielded mixed results, however. This may be primarily because of the lack of functional relationships between the taxa studied. Trematode parasites are highly promising bioindicators. Diverse assemblages of larval trematode parasites are easily sampled in intermediate host snails. Through their life cycles these parasites are functionally coupled with the surrounding free-living diversity of vertebrate and invertebrate animals. It has been shown that larval trematodes in snails correlate positively with bird diversity and abundance. Here, we explore whether trematodes also correlate with standard measures of fishes, and large and small benthos, for 32 sites in three wetlands. We found associations between trematodes and benthic communities that were not consistent across wetlands. The associations were, however, consistently positive for large benthic species richness and density. Some of the contrasting associations between trematode and benthos may be explained by negative associations between large and small benthos. We found no associations with fish communities (probably because of the inadequacy of standard "snapshot" sampling methods for highly mobile fishes). The results support further exploration of trematodes as bioindicators of diversity and abundance of animal communities. ?? 2006 Springer-Verlag.

Oecologia↗
USGS2014

Learning rate and temperament in a high predation risk environment

Living in challenging environments can influence the behavior of animals in a number of ways. For instance, populations of prey fish that experience frequent, nonlethal interactions with predators have a high proportion of individuals that express greater reaction to risk and increased activity and exploration&mdash;collectively known as temperament traits. Temperament traits are often correlated, such that individuals that are risk-prone also tend to be active and explore more. Spatial learning, which requires the integration of many sensory cues, has also been shown to vary in fish exposed to different levels of predation threat. Fish from areas of low predation risk learn to solve spatial tasks faster than fish from high predation areas. However, it is not yet known whether simpler forms of learning, such as learning associations between two events, are similarly influenced. Simple forms of associative learning are likely to be affected by temperament because a willingness to approach and explore novel situations could provide animals with a learning advantage. However, it is possible that routine-forming and inflexible traits associated with risk-prone and increased exploratory behavior may act in the opposite way and make risk-prone individuals poorer at learning associations. To investigate this, we measured temperament in Panamanian bishop fish ( Brachyrhaphis episcopi ) sampled from a site known to contain many predators. The B. episcopi were then tested with an associative learning task. Within this population, fish that explored more were faster at learning a cue that predicted access to food, indicating a link between temperament and basic learning abilities.

Oecologia↗