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Active season microhabitat and vegetation selection by giant gartersnakes associated with a restored marsh in California

Studies of habitat selection can reveal important patterns to guide habitat restoration and management for species of conservation concern. Giant gartersnakes Thamnophis gigas are endemic to the Central Valley of California, where >90% of their historical wetland habitat has been converted to agricultural and other uses. Information about the selection of habitats by individual giant gartersnakes would guide habitat restoration by indicating which habitat features and vegetation types are likely to be selected by these rare snakes. We examined activity patterns and selection of microhabitats and vegetation types by adult female giant gartersnakes with radiotelemetry at a site composed of rice agriculture and restored wetlands using a paired case-control study design. Adult female giant gartersnakes were 14.7 (95% credible interval [CRI] = 9.4–23.7) times more likely to be active (foraging, mating, or moving) when located in aquatic habitats than when located in terrestrial habitats. Microhabitats associated with cover—particularly emergent vegetation, terrestrial vegetation, and litter—were positively selected by giant gartersnakes. Individual giant gartersnakes varied greatly in their selection of rice and rock habitats, but varied little in their selection of open water. Tules Schoenoplectus acutus were the most strongly selected vegetation type, and duckweed Lemna spp., water-primrose Ludwigia spp., forbs, and grasses also were positively selected at the levels of availability observed at our study site. Management practices that promote the interface of water with emergent aquatic and herbaceous terrestrial vegetation will likely benefit giant gartersnakes. Given their strong selection of tules, restoration of native tule marshes will likely provide the greatest benefit to these threatened aquatic snakes.

California

Reach-scale effects of riparian forest cover on urban stream ecosystems

We compared habitat and biota between paired open and forested reaches within five small streams (basin area 10?20 km2) in suburban catchments (9%?49% urban land cover) in the Piedmont of Georgia, USA. Stream reaches with open canopies were narrower than forested reaches (4.1 versus 5.0 m, respectively). There were no differences in habitat diversity (variation in velocity, depth, or bed particle size) between open and forested reaches. However, absence of local forest cover corresponded to decreased large wood and increased algal chlorophyll a standing crop biomass. These differences in basal food resources translated into higher densities of fishes in open (9.0 individuals?m?2) versus forested (4.9 individuals?m?2) reaches, primarily attributed to higher densities of the herbivore Campostoma oligolepis. Densities of terrestrial invertebrate inputs were higher in open reaches; however, trends suggested higher biomass of terrestrial inputs in forested reaches and a corresponding higher density of terrestrial prey consumed by water column feeding fishes. Reach-scale biotic integrity (macroinvertebrates, salamanders, and fishes) was largely unaffected by differences in canopy cover. In urbanizing areas where catchment land cover drives habitat and biotic quality, management practices that rely exclusively on forested riparian areas for stream protection are unlikely to be effective at maintaining ecosystem integrity.

Canadian Journal of Fisheries and Aquatic Sciences

Description, Properties, and Degradation of Selected Volatile Organic Compounds Detected in Ground Water--A Review of Selected Literature

This report provides abridged information describing the most salient properties and biodegradation of 27 chlorinated volatile organic compounds detected during ground-water studies in the United States. This information is condensed from an extensive list of reports, papers, and literature published by the U.S. Government, various State governments, and peer-reviewed journals. The list includes literature reviews, compilations, and summaries describing volatile organic compounds in ground water. This report cross-references common names and synonyms associated with volatile organic compounds with the naming conventions supported by the International Union of Pure and Applied Chemistry. In addition, the report describes basic physical characteristics of those compounds such as Henry's Law constant, water solubility, density, octanol-water partition (log Kow), and organic carbon partition (log Koc) coefficients. Descriptions and illustrations are provided for natural and laboratory biodegradation rates, chemical by-products, and degradation pathways.

Open-File Report

A one-dimensional heat-transport model for conduit flow in karst aquifers

A one-dimensional heat-transport model for conduit flow in karst aquifers is presented as an alternative to two or three-dimensional distributed-parameter models, which are data intensive and require knowledge of conduit locations. This model can be applied for cases where water temperature in a well or spring receives all or part of its water from a phreatic conduit. Heat transport in the conduit is simulated by using a physically-based heat-transport equation that accounts for inflow of diffuse flow from smaller openings and fissures in the surrounding aquifer during periods of low recharge. Additional diffuse flow that is within the zone of influence of the well or spring but has not interacted with the conduit is accounted for with a binary mixing equation to proportion these different water sources. The estimation of this proportion through inverse modeling is useful for the assessment of contaminant vulnerability and well-head or spring protection. The model was applied to 7 months of continuous temperature data for a sinking stream that recharges a conduit and a pumped well open to the Madison aquifer in western South Dakota. The simulated conduit-flow fraction to the well ranged from 2% to 31% of total flow, and simulated conduit velocity ranged from 44 to 353 m/d.

Journal of Hydrology

Lake St. Clair zooplankton: Evidence for post-Dreissena changes

We surveyed the zooplankton of Lake St. Clair at 12 sites over ten dates from May to October 2000. Mean zooplankton density by site and date was 168.6 individuals/L, with Dreissena spp. veligers the most abundant taxon at 122.7 individuals/L. Rotifers, copepods, and cladocerans were far lower in mean abundance than in the early 1970s (rotifers, 20.9/L; copepods, 18.1/L; and cladocerans, 6.8/L). Species richness of zooplankton taxa in 2000 was 147, which was virtually unchanged from that of the first reported survey in 1894. Overall, the decline in abundance was greatest for rotifers (-90%) and about equal for cladocerans (-69%) and copepods (-66%). The decrease in abundance of Daphnia spp. was especially dramatic in Canadian waters. The decline in the southeastern region was significant for all three major groups of zooplankton, whereas in the northwestern region the decline was significant only for rotifers. From June to August 2000, Lake St. Clair open waters were numerically dominated by Dreissena spp. veligers, with a reduced abundance of rotifers and crustaceans compared to pre-Dreissena spp. surveys. Mean nutrient concentrations were not different from the 1970s, but Secchi depth (greater) and chlorophyll a concentration (lower) were. Disproportionate reduction in rotifer abundance is consistent with hypotheses implicating direct consumption by settled Dreissena spp. Reduction of crustaceans is likely due to more complex interactions including removal of nauplii as well as resource competition for phytoplankton.

Michigan, Ontario

Early Ordovician gastropod opercula and epicontinental seas

Collections made for some years from Lower Ordovician rocks by many geologists have established that the heavy calcareous operculum of the gastropod Ceratopea is almost never found associated with a shell and that commonly this operculum is secondarily silicified. Ceratopea may have lived in a stressed habitat and may have been essentially the only shelled invertebrate present. Presumably these animals grazed on algal mats and mounds growing in areas of water slightly more saline than open marine water and were killed by an influx of hypersaline water. Subsequent decay of soft parts would permit the operculum to rot off and would also lighten the shell so that it could float away. Pene-contemporaneous silicification of calcareous opercula on the Ordovician sea bottom is postulated. Some Middle Ordovician opercula of the Middle to Late Ordovician genus Maclurites serve to test this speculation. These opercula also occur in geologic settings which may be interpreted in terms of kill of animal, wafting away of shell, and secondary silicification of operculum.

Alabama, Arkansas, Colorado, Georgia, Maryland, Ne

Spatial distribution of juvenile and adult female Tanner crabs (Chionoecetes bairdi) in a glacial fjord ecosystem: Implications for recruitment processes

A systematic pot survey in Glacier Bay, Alaska, was conducted to characterize the spatial distribution of juvenile and adult female Tanner crabs, and their association with depth and temperature. The information was used to infer important recruitment processes for Tanner crabs in glaciated ecosystems. High-catch areas for juvenile and adult female Tanner crabs were identified using local autocorrelation statistics. Spatial segregation by size class corresponded to features in the glacial landscape: high-catch areas for juveniles were located at the distal ends of two narrow glacial fjords, and high-catch areas for adults were located in the open waters of the central Bay. Juvenile female Tanner crabs were found at nearly all sampled depths (15–439 m) and temperatures (4–8°C), but the biggest catches were at depths <150 m where adults were scarce. Because adults may prey on or compete with juveniles, the distribution of juveniles could be influenced by the distribution of adults. Areas where adults or predators are scarce, such as glacially influenced fjords, could serve as refuges for juvenile Tanner crabs.

ICES Journal of Marine Science

Publications of the Western Earth Surface Processes Team, 1999

The Western Earth Surfaces Processes Team (WESPT) of the U.S. Geological Survey, Geologic Division (USGS, GD), conducts geologic mapping and related topical earth- science studies in the western United States. This work is focused on areas where modern geologic maps and associated earth-science data are needed to address key societal and environmental issues such as ground-water quality, potential geologic hazards, and land-use decisions. Areas of primary emphasis currently include southern California, the San Francisco Bay region, and the Pacific Northwest. The team has its headquarters in Menlo Park, California, and maintains field offices at several other locations in the western United States. The results of research conducted by the WESPT are released to the public as a variety of databases, maps, text reports, and abstracts, both through the internal publication system of the USGS and in diverse external publications such as scientific journals and books. This report lists publications of the WESPT released in 1999 as well as additional 1997 and 1998 publications that were not included in the previous list (USGS Open-file Report 99-302). Most of the publications listed were authored or coauthored by WESPT staff. The list also includes some publications authored by non-USGS cooperators with the WESPT, as well as some authored by USGS staff outside the WESPT in cooperation with WESPT projects.

Open-File Report

Permafrost thaw in a nested groundwater-flow system

Groundwater flow in cold regions containing permafrost accelerates climate-warming-driven thaw and changes thaw patterns. Simulation analyses of groundwater flow and heat transport with freeze/thaw in typical cold-regions terrain with nested flow indicate that early thaw rate is particularly enhanced by flow, the time when adverse environmental impacts of climate-warming-induced permafrost loss may be severest. For the slowest climate-warming rate predicted by the Intergovernmental Panel on Climate Change (IPCC), once significant groundwater flow begins, thick permafrost layers can vanish in several hundred years, but survive over 1,000 years where flow is minimal. Large-scale thaw depends mostly on the balance of heat advection and conduction in the supra-permafrost zone. Surface-water bodies underlain by open taliks allow slow sub-permafrost flow, with lesser influence on regional thaw. Advection dominance over conduction depends on permeability and topography. Groundwater flow around permafrost and flow through permafrost impact thaw differently; the latter enhances early thaw rate. Air-temperature seasonality also increases early thaw. Hydrogeologic heterogeneity and topography strongly affect thaw rates/patterns. Permafrost controls the groundwater/surface-water-geomorphology system; hence, prediction and mitigation of impacts of thaw on ecology, chemical exports and infrastructure require improved hydrogeology/permafrost characterization and understanding

Hydrogeology Journal

Hydrology of carbonate rock terranes — A review: With special reference to the United States

Limestone and other carbonate rocks are characterized by many unusual features and extreme conditions, either involving the hydrologic system within them or wrought by hydrologic conditions on them or through them. Perhaps there could be little agreement as to what is typical or average for the many features of carbonate rocks, as indicated by the following conditions: bare rock and thin soils are common, but so are thick soils; very highly permeable limestones are common, but so are poorly permeable ones; and rugged karst topographic features with underlying solution caverns are common, but so are flat, nearly featureless topographic conditions. Some conditions of carbonate terranes are suitable to man's needs and interests, such as the use of some permeable aquifers for water supply and the exploitation of caves for tourist attractions. On the other hand, many problems may exist, including: permeability too low for adequate water supply or so high that the aquifer retains too little water for use during periods of fair weather, soils too thin for growing of crops and for adequate filtration of wastes near the ground surface, instability of the ground for buildings and foundations in sinkhole areas, and unusually rugged topography. Some of the many variable conditions are readily observable, but others can be determined only by careful geologic and hydrologic studies. The need for knowing the specific geologic and hydrologic conditions at various places in limestone terranes, as well as the variations in hydrologic conditions with changing conditions and time, has resulted in many published reports on local areas and on special topical problems of limestone hydrology. Many of these reports have been used to advantage by the present writers in preparing this paper. The concept that secondary permeability is developed by circulation of water through openings with the accompanying enlargement of these openings by solution is now universally accepted in limestone terranes. Emphasis is placed on the hydrogeologic framework, or structural setting, in relation to the ease or difficulty of water to move from a source of recharge, through a part of the limestone, to a discharge area. Parts of the limestone favored by circulating ground water tend to develop solution openings, commonly in the upper part of the zone of saturation; as base level is lowered (sea level or perennial stream level), the related water table lowers in the limestone leaving air-filled caverns above the present zone of saturation in sinkhole areas. Reconstruction of the geologic and hydrologic history of a limestone area aids in determining the extent of development and the positions of fossil and present permeability. References are made to the hydrology of many limestone regions, especially those of the United States.

Journal of Hydrology

Barrier island breach evolution: Alongshore transport and bay-ocean pressure gradient interactions

Physical processes controlling repeated openings and closures of a barrier island breach between a bay and the open ocean are studied using aerial photographs and atmospheric and hydrodynamic observations. The breach site is located on Pea Island along the Outer Banks, separating Pamlico Sound from the Atlantic Ocean. Wind direction was a major control on the pressure gradients between the bay and the ocean to drive flows that initiate or maintain the breach opening. Alongshore sediment flux was found to be a major contributor to breach closure. During the analysis period from 2011 to 2016, three hurricanes had major impacts on the breach. First, Hurricane Irene opened the breach with wind-driven flow from bay to ocean in August 2011. Hurricane Sandy in October 2012 quadrupled the channel width from pressure gradient flows due to water levels that were first higher on the ocean side and then higher on the bay side. The breach closed sometime in Spring 2013, most likely due to an event associated with strong alongshore sediment flux but minimal ocean-bay pressure gradients. Then, in July 2014, Hurricane Arthur briefly opened the breach again from the bay side, in a similar fashion to Irene. In summary, opening and closure of breaches are shown to follow a dynamic and episodic balance between along-channel pressure gradient driven flows and alongshore sediment fluxes.

Pea Island

National Research Program of the Water Resources Division, U. S. Geological Survey, Fiscal Year 1992

This report, one in a series of annual reports, provides current information about the National Research Program (NRP) of the U.S. Geological Survey's Water Resources Division (WRD) during fiscal year 1992. Organized by NRP's six research disciplines, the volume contains a summary of the problem, objective, approach, and progress for each project that was active during fiscal year 1992. It also contains bibliographic information that, because of the long-term nature of the program, covers a 5-year period. The bibliographic information does not include abstracts or informal reports. Rather it contains those reports that are readily available in the form of journal articles, U.S. Geological Survey (USGS) publications, book chapters, or books.

Open-File Report

Sulfate deposition in subsurface regolith in Gusev crater, Mars

Excavating into the shallow Martian subsurface has the potential to expose stratigraphic layers and mature regolith, which may hold a record of more ancient aqueous interactions than those expected under current Martian surface conditions. During the Spirit rover's exploration of Gusev crater, rover wheels were used to dig three trenches into the subsurface regolith down to 6-11 cm depth: Road Cut, the Big Hole, and The Boroughs. A high oxidation state of Fe and high concentrations of Mg, S, Cl, and Br were found in the subsurface regolith within the two trenches on the plains, between the Bonneville crater and the foot of Columbia Hills. Data analyses on the basis of geochemistry and mineralogy observations suggest the deposition of sulfate minerals within the subsurface regolith, mainly Mg-sulfates accompanied by minor Ca-sulfates and perhaps Fe-sulfates. An increase of Fe2O3, an excess of SiO2, and a minor decrease in the olivine proportion relative to surface materials are also inferred. Three hypotheses are proposed to explain the geochemical trends observed in trenches: (1) multiple episodes of acidic fluid infiltration, accompanied by in situ interaction with igneous minerals and salt deposition; (2) an open hydrologic system characterized by ion transportation in the fluid, subsequent evaporation of the fluid, and salt deposition; and (3) emplacement and mixing of impact ejecta of variable composition. While all three may have plausibly contributed to the current state of the subsurface regolith, the geochemical data are most consistent with ion transportation by fluids and salt deposition as a result of open-system hydrologic behavior. Although sulfates make up >20 wt.% of the regolith in the wall of The Boroughs trench, a higher hydrated sulfate than kieserite within The Boroughs or a greater abundance of sulfates elsewhere than is seen in The Boroughs wall regolith would be needed to hold the structural water indicated by the water-equivalent hydrogen concentration observed by the Gamma-Ray Spectrometer on Odyssey in the Gusev region.

Journal of Geophysical Research E: Planets

Defining winter trophic habitat of juvenile Gulf Sturgeon in the Suwannee and Apalachicola rivermouth estuaries, acoustic telemetry investigations

Three automated listening post-telemetry studies were undertaken in the Suwannee and Apalachicola estuaries to gain knowledge of habitats use by juvenile Gulf Sturgeons ( Acipenser oxyrinchus desotoi ) on winter feeding grounds. A simple and reliable method for external attachment of small acoustic tags to the dorsal fin base was developed using shrink-tubing. Suspending receivers on masts below anchored buoys improved reception and facilitated downloading; a detection range of 500–2500 m was realized. In the Apalachicola estuary, juvenile GS stayed in shallow water (< 2 m) within the estuarine transition zone all winter in the vicinity of the Apalachicola River mouth. Juvenile GS high-use areas did not coincide with high density benthic macrofauna areas from the most recent (1999) benthos survey. In the Suwannee estuary, juveniles ranged widely and individually throughout oligohaline to mesohaline subareas of the estuary, preferentially using mesohaline subareas seaward of Suwannee Reef (52% of acoustic detections). The river mouth subarea was important only in early and late winter, during the times of adult Gulf Sturgeon migrations (41% of detections). Preferred winter feeding subareas coincided spatially with known areas of dense macrofaunal benthos concentrations. Following a dramatic drop in air and water temperatures, juvenile GS left the river mouth and estuary, subsequently being detected 8 km offshore in polyhaline open Gulf of Mexico waters, before returning to the estuary. Cold-event offshore excursions demonstrate that they can tolerate full-salinity polyhaline waters in the open Gulf of Mexico, for at least several days at a time. For juvenile sturgeons, the stress and metabolic cost of enduring high salinity (Jarvis et al., 2001; McKenzie et al., 2001; Singer and Ballantyne, 2002) for short periods in deep offshore waters seems adaptively advantageous relative to the risk of cold-event mortality in shallow inshore waters of lower salinity. Thus, while juveniles can tolerate high salinities for days to weeks to escape cold events, they appear to make only infrequent use of open polyhaline waters. Throughout the winter foraging period, juvenile GS stayed primarily within the core area of Suwannee River mouth influence, extending about 12 km north and south of the river mouth, and somewhat seaward of Suwannee Reef (< 5 km offshore). None were detected departing the core area past either of the northern or southern acoustic gates, located 66 and 52 km distant from the river mouth, respectively.

Florida

National Research Program of the Water Resources Division, U.S. Geological Survey, Fiscal Year 1993

INTRODUCTION This report, one in a series of annual reports, provides current information about the National Research Program (NRP) of the U.S. Geological Survey's (USGS) Water Resources Division (WRD) during fiscal year 1993. Organized by NRP's six research disciplines, the volume contains a summary of the problem, objective, approach, and progress for each project that was active during fiscal year 1993. It also contains bibliographic information that, because of the long-term nature of the program, covers a 5-year period. The bibliographic information does not include abstracts or informal reports. Rather it contains those reports that are readily available in the form of journal articles, USGS publications, book chapters, or books.

Open-File Report

Publications of the Western Earth Surface Processes Team 2000

The Western Earth Surface Processes Team (WESP) of the U.S. Geological Survey (USGS) conducts geologic mapping and related topical earth science studies in the western United States. This work is focused on areas where modern geologic maps and associated earth-science data are needed to address key societal and environmental issues such as ground-water quality, potential geologic hazards, and land-use decisions. Areas of primary emphasis in 2000 included southern California, the San Francisco Bay region, the Pacific Northwest, the Las Vegas urban corridor, and selected National Park lands. The team has its headquarters in Menlo Park, California, and maintains smaller field offices at several other locations in the western United States. The results of research conducted by the WESPT are released to the public as a variety of databases, maps, text reports, and abstracts, both through the internal publication system of the USGS and in diverse external publications such as scientific journals and books. This report lists publications of the WESPT released in 2000 as well as additional 1999 publications that were not included in the previous list (USGS Open-file Report 00-215). Most of the publications listed were authored or coauthored by WESPT staff. The list also includes some publications authored by non-USGS cooperators with the WESPT, as well as some authored by USGS staff outside the WESPT in cooperation with WESPT projects. Several of the publications listed are available on the World Wide Web; for these, URL addresses are provided. Many of these Web publications are USGS open-file reports that contain large digital databases of geologic map and related information.

Open-File Report

Publications of Western Earth Surface Processes Team 2001

The Western Earth Surface Processes Team (WESPT) of the U.S. Geological Survey (USGS) conducts geologic mapping and related topical earth-science studies in the Western United States. This work is focused on areas where modern geologic maps and associated earth-science data are needed to address key societal and environmental issues, such as ground-water quality, landslides and other potential geologic hazards, and land-use decisions. Areas of primary emphasis in 2001 included southern California, the San Francisco Bay region, the Pacific Northwest, and the Las Vegas urban corridor. The team has its headquarters in Menlo Park, California, and maintains smaller field offices at several other locations in the Western United States. The results of research conducted by the WESPT are released to the public as a variety of databases, maps, text reports, and abstracts, both through the internal publication system of the USGS and in diverse external publications such as scientific journals and books. This report lists publications of the WESPT released in 2001, as well as additional 1999 and 2000 publications that were not included in the previous list (USGS Open-File Report 00–215 and USGS Open-File Report 01–198). Most of the publications listed were authored or coauthored by WESPT staff. The list also includes some publications authored by non-USGS cooperators with the WESPT, as well as some authored by USGS staff outside the WESPT in cooperation with WESPT projects. Several of the publications listed are available on the World Wide Web; for these, URL addresses are provided. Many of these web publications are USGS Open-File Reports that contain large digital databases of geologic map and related information.

Open-File Report

Publications of the Western Earth Surface Processes Team 2002

The Western Earth Surface Processes Team (WESPT) of the U.S. Geological Survey (USGS) conducts geologic mapping and related topical earth science studies in the western United States. This work is focused on areas where modern geologic maps and associated earth-science data are needed to address key societal and environmental issues such as ground-water quality, landslides and other potential geologic hazards, and land-use decisions. Areas of primary emphasis in 2001 included southern California, the San Francisco Bay region, the Pacific Northwest, and the Las Vegas urban corridor. The team has its headquarters in Menlo Park, California, and maintains smaller field offices at several other locations in the western United States. The results of research conducted by the WESPT are released to the public as a variety of databases, maps, text reports, and abstracts, both through the internal publication system of the USGS and in diverse external publications such as scientific journals and books. This report lists publications of the WESPT released in 2002 as well as additional 1998 and 2001 publications that were not included in the previous list (USGS Open-File Report 00-215, USGS Open-File Report 01-198, and USGS Open-File Report 02-269). Most of the publications listed were authored or coauthored by WESPT staff. The list also includes some publications authored by non-USGS cooperators with the WESPT, as well as some authored by USGS staff outside the WESPT in cooperation with WESPT projects. Several of the publications listed are available on the World Wide Web; for these, URL addresses are provided. Many of these web publications are USGS open-file reports that contain large digital databases of geologic map and related information. Information on ordering USGS publications can be found on the World Wide Web or by calling 1-888-ASK-USGS. The U.S. Geological Survey’s web server for geologic information in the western United States is located at http://geology.wr.usgs.gov. More information is available about the WESPT is available on-line at the team website.

Open-File Report