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Environmental impact analysis; the example of the proposed Trans-Alaska Pipeline

The environmental impact analysis made as required by the National Environmental Policy Act of 1969 for the proposed trans-Alaska pipeline included consideration of the (1) technologically complex and geographically extensive proposed project, (2) extremely different physical environments across Alaska along the proposed route and elsewhere in Alaska and in Canada along alternative routes, (3) socioeconomic environment of the State of Alaska, and (4) a wide variety of alternatives. The analysis was designed specifically to fit the project and environment that would be affected. The environment was divided into two general parts--natural physical systems and superposed socioeconomic systems--and those parts were further divided into discipline-oriented systems or components that were studied and analyzed by scientists of the appropriate discipline. Particular attention was given to potential feedback loops in the impact network and to linkages between the project's impacting effects and the environment. The results of the analysis as reported in the final environmental impact statement were that both unavoidable and threatened environmental impacts would result from construction, operation, and maintenance of the proposed pipeline system and the developments related to it. The principal unavoidable effects would be (1) disturbances of terrain, fish and wildlife habitat, and human environs, (2) the results of the discharge of effluent from the tanker-ballast-treatment facility into Port Valdez and of some indeterminate amount of oil released into the ocean from tank-cleaning operations at sea, and (3) the results associated with increased human pressures of all kinds on the environment. Other unavoidable effects would be those related to increase of State and Native Corporation revenues, accelerated cultural change of the Native population, and extraction of the oil and gas resource. The main threatened environmental effects would all be related to unintentional oil loss from the pipeline, from tankers, or in the oil field. Oil losses from the pipeline could be caused by direct or indirect effects of earthquakes, destructive sea waves, slope failure caused by natural or artificial processes, thaw-plug instability (in permafrost), differential settlement of permafrost terrain, and bed scour and bank erosion at stream crossings. Oil loss from tankers could be caused by accidents during transfer operations at Valdez and at destination ports and by casualties involving tankers and other ships. Comparison of alternative routes and transportation systems and of their environmental impacts provided information which indicates to the author that one corridor containing both oil and gas pipelines would have less environmental impact than would separate corridors. Considering also the threat to the marine environment that any tanker system would impose and the threat that zones of high earthquake frequency and magnitude would impose on pipelines, it is apparent to the author that environmental impact and cost would be least for a single-corridor on-land route that avoided earthquake zones. The alternative trans-Alaska-Canada routes would meet these criteria. The decisions of the U.S. Department of the Interior, the U.S. Congress, and the President of the United States in favor of the proposed trans-Alaska pipeline system indicate the relative weight given by the decision makers in balancing the importance of potential environmental consequences against the advantages to be derived from rapid resource development.

Circular

Application of sediment characteristics and transport conditions to resource management in selected main-stem reaches of the Upper Colorado River, Colorado and Utah, 1965-2007

The Colorado River Basin provides habitat for 14 native fish, including 4 endangered species protected under the Federal Endangered Species Act of 1973. These endangered fish species once thrived in the Colorado River system, but water-resource development, including the building of numerous diversion dams and several large reservoirs, and the introduction of non-native fish, resulted in large reductions in the numbers and range of the four species through loss of habitat and stream function. Understanding how stream conditions and habitat change in response to alterations in streamflow is important for water administrators and wildlife managers and can be determined from an understanding of sediment transport. Characterization of the processes that are controlling sediment transport is an important first step in identifying flow regimes needed for restored channel morphology and the sustained recovery of endangered fishes within these river systems. The U.S. Geological Survey, in cooperation with the Upper Colorado River Endangered Fish Recovery Program, Bureau of Reclamation, U.S. Fish and Wildlife Service, Argonne National Laboratory, Western Area Power Administration, and Wyoming State Engineer’s Office, began a study in 2004 to characterize sediment transport at selected locations on the Colorado, Gunnison, and Green Rivers to begin addressing gaps in existing datasets and conceptual models of the river systems. This report identifies and characterizes the relation between streamflow (magnitude and timing) and sediment transport and presents the findings through discussions of (1) suspended-sediment transport, (2) incipient motion of streambed material, and (3) a case study of sediment-transport conditions for a reach of the Green River identified as a razorback sucker spawning habitat (See report for full abstract).

Colorado;Utah

Preliminary volcano-hazard assessment for Kanaga Volcano, Alaska

Kanaga Volcano is a steep-sided, symmetrical, cone-shaped, 1307 meter high, andesitic stratovolcano on the north end of Kanaga Island (51°55’ N latitude, 177°10’ W longitude) in the western Aleutian Islands of Alaska. Kanaga Island is an elongated, low-relief (except for the volcano) island, located about 35 kilometers west of the community of Adak on Adak Island and is part of the Andreanof Islands Group of islands. Kanaga Volcano is one of the 41 historically active volcanoes in Alaska and has erupted numerous times in the past 11,000 years, including at least 10 eruptions in the past 250 years (Miller and others, 1998). The most recent eruption occurred in 1993-95 and caused minor ash fall on Adak Island and produced blocky aa lava flows that reached the sea on the northwest and west sides of the volcano (Neal and others, 1995). The summit of the volcano is characterized by a small, circular crater about 200 meters in diameter and 50-70 meters deep. Several active fumaroles are present in the crater and around the crater rim. The flanking slopes of the volcano are steep (20-30 degrees) and consist mainly of blocky, linear to spoonshaped lava flows that formed during eruptions of late Holocene age (about the past 3,000 years). The modern cone sits within a circular caldera structure that formed by large-scale collapse of a preexisting volcano. Evidence for eruptions of this preexisting volcano mainly consists of lava flows exposed along Kanaton Ridge, indicating that this former volcanic center was predominantly effusive in character. In winter (October-April), Kanaga Volcano may be covered by substantial amounts of snow that would be a source of water for lahars (volcanic mudflows). In summer, much of the snowpack melts, leaving only a patchy distribution of snow on the volcano. Glacier ice is not present on the volcano or on other parts of Kanaga Island. Kanaga Island is uninhabited and is part of the Alaska Maritime National Wildlife Refuge, managed by the U.S. Fish and Wildlife Service. The island is remote and often shrouded by clouds and fog. It can be reached only by boat, helicopter,or amphibiouslanding aircraft.

Alaska

Extended abstracts from the Coastal Habitats in Puget Sound (CHIPS) 2006 Workshop

Puget Sound is the second largest estuary in the United States. Its unique geology, climate, and nutrient-rich waters produce and sustain biologically productive coastal habitats. These same natural characteristics also contribute to a high quality of life that has led to a significant growth in human population and associated development. This population growth, and the accompanying rural and urban development, has played a role in degrading Puget Sound ecosystems, including declines in fish and wildlife populations, water-quality issues, and loss and degradation of coastal habitats. In response to these ecosystem declines and the potential for strategic large-scale preservation and restoration, a coalition of local, State, and Federal agencies, including the private sector, Tribes, and local universities, initiated the Puget Sound Nearshore Ecosystem Restoration Project (PSNERP). The Nearshore Science Team (NST) of PSNERP, along with the U.S. Geological Survey, developed a Science Strategy and Research Plan (Gelfenbaum and others, 2006) to help guide science activities associated with nearshore ecosystem restoration. Implementation of the Research Plan includes a call for State and Federal agencies to direct scientific studies to support PSNERP information needs. In addition, the overall Science Strategy promotes greater communication with decision makers and dissemination of scientific results to the broader scientific community. On November 14–16, 2006, the U.S. Geological Survey sponsored an interdisciplinary Coastal Habitats in Puget Sound (CHIPS) Research Workshop at Fort Worden State Park, Port Townsend, Washington. The main goals of the workshop were to coordinate, integrate, and link research on the nearshore of Puget Sound. Presented research focused on three themes: (1) restoration of large river deltas; (2) recovery of the nearshore ecosystem of the Elwha River; and (3) effects of urbanization on nearshore ecosystems. The more than 35 presentations covered a wide range of ongoing inter-disciplinary research, including studies of sediment geochemistry of aquatic environments, sediment budgets, tracking fish pathways, expansion of invasive forams, beach and nearshore sedimentary environments, using influence diagrams as a decision support tool, forage fish, submarine groundwater, and much, much more. The primary focus within these themes was on developing information on the physical, chemical, and biological processes, as well as the human dimensions, associated with the restoration or rehabilitation of the nearshore environment. The workshop was an excellent opportunity for USGS scientists and collaborators who are working on Puget Sound coastal habitats to present their preliminary findings, discuss upcoming research, and to identify opportunities for interdisciplinary collaboration. A compilation of extended abstracts from workshop participants, this proceedings volume serves as a useful reference for attendees of the workshop and for those unable to attend. Taken together, the abstracts in this report provide a view of the current status of USGS multidisciplinary research on Puget Sound coastal habitats.

Open-File Report

Seasonal and spatial distribution patterns of finfish and selected invertebrates in coastal lagoons of northeastern Florida, 2002-2004

The U.S. Geological Survey conducted a survey of juvenile fisheries resources, in cooperation with the St. Johns River Water Management District and Volusia County, to establish baseline data on spatial and temporal distribution patterns of estuarine fish. The survey was conducted from November 2001 to March 2005 and the baseline data established for the survey in the Northern Coastal Basins were collected from January 2002 to December 2004. The study area included the bar-built estuaries ranging from just north of St. Augustine, Florida, south to Ponce de Leon Inlet. Sampling protocols developed by the Florida Fish and Wildlife Research Institute for their statewide Fisheries Independent Monitoring (FIM) program were replicated to allow for comparability with FIM program results. Samples were collected monthly from randomly selected stations based on a geographically stratified design. Finfish and selected invertebrates were collected using a 21.3-meter center-bag seine with a 3-millimeter mesh, and a 6.1-meter otter trawl with a 3-millimeter mesh liner. Total estimated fish and selected invertebrate densities were similar to estimates from FIM projects in adjacent areas and were characterized by similar dominant species. Preliminary analysis indicates that observed species distribution patterns were mainly a function of proximity to the three inlets within the study area. The two regions encompassing the northern Tolomato River and the Tomoka River and Basin are farthest from inlets and appear to function as oligohaline nursery areas. Those two areas had the greatest estimated densities of shellfish and juvenile sciaenid (drum) species associated with oligohaline waters (for example, Micropogonias undulatus, Sciaenops ocellatus and Cynoscion nebulosus). Samples near inlets, and between the two northern inlets, had greater estimated densities of species limited to euhaline waters, including juvenile clupeids collected at relatively high abundance and species of marine strays collected in low abundance. Based on correspondence analysis, seasonal variation dominated the ordination of seine samples and spatial variation dominated the ordination of trawl samples; this was due to differences in the number and timing of taxa found near inlets versus oligohaline regions. The absence of seagrass habitat in the Northern Coastal Basins is reflected by the absence of a seagrass-fish assemblage.

Scientific Investigations Report

Moosehorn National Wildlife Refuge Workbook Summary

The Moosehorn National Wildlife Refuge in eastern Maine is currently developing a comprehensive conservation plan (CCP) that will guide Refuge management over the next 15 years. Workbooks were provided to local residents as part of the scoping process in order to get feedback on current and future management issues from the public. The workbooks asked questions regarding residents' use of the Refuge, conservation problems and issues in the region, the acceptability of Refuge management actions, and the importance of, satisfaction with, and acceptability of various activities allowed on the Refuge. The focus of this report is to present the results of the completed workbooks. Because of the small number of returned workbooks, it is not possible to generalize these findings to the broader public, nor is it possible to determine if respondents represent the average user. However, the results do provide an idea of possible conflicts and important issues that the Refuge may have to address in the future. The permitted uses of the Refuge are one possible conflict area. Many respondents were supportive of consumptive recreation (hunting, fishing, and trapping), but a few were adamantly opposed to these sorts of activities on the Refuge. Another issue that received several comments was motorized recreation. While some people felt strongly that ATVs and snowmobiles should be allowed, others felt just as strongly that motorized recreation of any type should not be allowed in the Refuge. Many in the sample were also very concerned about Refuge development and its effects on the human and natural environments. Issues mentioned include the loss of access to private land for consumptive recreation, concern about fish and wildlife habitat degradation, and water quality.

Open-File Report

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota—Species of conservation concern

The ecosystems of the Williston Basin provide direct and indirect benefits to society. These benefits include carbon sequestration, flood control, nutrient rich soils for agricultural productivity, and habitat for wildlife. This chapter’s main focus is on the effects of energy development on species that occupy the ecosystems in the Williston Basin. We compiled a list of documented species of conservation concern that are of most interest to Federal regulators and resource managers. Species of concern were either listed as endangered or threatened under the Endangered Species Act or listed by States as species of concern in Natural Heritage Program checklists or State Wildlife Action Plans. All told, we determined that 357 species of concern likely occupy the Williston Basin. These species represented seven different taxonomic groups: plants (native and nonnative), terrestrial invertebrates, birds, mammals, reptiles and amphibians, and fish and mussels. We reviewed the existing scientific information pertaining to potential effects of energy development on these taxonomic groups. Currently, little is known about the abundance and distribution of many of these species. But some information exists that may be useful in predicting the potential effects of energy development on certain taxonomic groups. Most of this information has been developed through scientific research focused on effects to mammal and bird populations. Effects to other taxonomic groups seems to be understudied. In general, it seems that disturbances and modifications associated with development have the potential to negatively affect a wide range of species; however, many studies produce uncertain results because they are not designed to compare populations before and after energy development takes place. Most of these studies also do not monitor resources over multiple years and thus cannot detect population trends. Likewise, there are few examples of landscape-scale assessments of the cumulative effects of energy development that could be used for species or habitat management purposes. We suggest that more research needs to be completed to measure potential effects to a broad range of species in multiple taxonomic groups. This may require also developing some understanding about the basic ecology of many of the species covered in this report. In concert with this more basic research, we also suggest that more comprehensive assessments of potential negative cumulative effects across the Williston Basin should be developed in an effort to guide more strategic management of biological resources.

Montana, North Dakota, South Dakota

Factors affecting waterfowl breeding density and productivity estimates in the Northeast

During 1977-79, information useful for making breeding pair and brood surveys was obtained while studying black duck (Anas rubripes) habitat selection and productivity in south-central Maine. Surveys should be initiated in relation to sunrise and sunset time. Morning versus evening counts, familiarity with the survey area, wetland dynamics of the study area, wetland surface water area, and allotment of relative survey effort are discussed as they affect the conduct and results of brood surveys.

Transactions of the Northeast Section of the Wildl

Use of Wetland Habitats by Selected Nongame Water Birds in Maine

We examined the use of 87 palustrine and lacustrine wetlands by nongame water birds in central and eastern Maine using 3,527 h of observation (1,501 visits) made during April-August, 1977-85. Wetlands used by 15 species of water birds were distinguished from those not used, according to 20 habitat features. The species were the common loon (Gavia immer) , pied-billed grebe (Podilymbus podiceps), double-crested cormorant (Phalacrocorax auritus), American bittern (Botaurus lentiginosus), great blue heron (Ardea herodias), green-backed heron (Butorides striatus), osprey (Pandion haliaetus), bald eagle (Haliaeetus leucocephalus), northern harrier (Circus cyaneus), Virgima rail (Rallus limicola), sora (Porzana carolina), spotted sandpiper (Actitis macularia), common snipe (Gallinago gallinago), herring gull (Larus argentatus), and belted kingfisher (Ceryle alcyon). Predictive models of habitat use were developed for each species. Water birds were classified by similarity of habitats used, and species use was contrasted by wetland type. Smaller, isolated wetlands were used by fewer (P < 0.05) species than larger wetlands in complexes; many species had large area-requirements (pied-billed grebe, common loon, herring gull, double-crested cormorant, bald eagle) or preferred to use wetlands near other wetlands (common loon, herring gull, great blue heron, spotted sandpiper, osprey, bald eagle). Wetland area contributed more to overall variation in species richness on wetlands than wetland isolation, although on small wetlands (<3.6 ha) isolation was a better predictor of species richness than wetland area. Wetlands with intermediate amounts (33-66%) of emergent vegetation supported more species (P< 0.05) than closed (>66%) or open (<33%) wetlands. Low pH typified wetlands used by large-bodied piscivores (common loon, cormorant, osprey). Other water birds were associated with more densely vegetated, chemically buffered wetlands. Habitat features associated with wetland use by each waterbird species are reported, as are numerical responses of waterbird populations to wetland features and estimates of annual variation in habitat occupancy. Lacustrine wetlands supported a distinct, low diversity community of water birds, including most fish-eating species. Waterbird diversity at forested palustrine wetlands was intermediate between lacustrine communities and more species-rich assemblages at palustrine emergent and scrub-shrub wetlands. Regional variation in wetland characteristics and water bird use was associated with surficial geology, soils, and management practices. Management for nongame water birds in Maine should consider providing emergent and aquatic-bed vegetation with variable cover-to-water ratios, accommodating species-specific habitat needs, focusing on species of restricted distribution and low abundance, and maintaining wetland complexes. Bird use and habitat information from 87 wetlands and models of habitat selection for each species are provided in appendixes.

Fish and Wildlife Research

Houston-Galveston Bay area, Texas, from space; a new tool for mapping land subsidence

Interferometric Synthetic Aperture Radar (InSAR) is a powerful new tool that uses radar signals to measure displacement (subsidence and uplift) of the Earth's crust at an unprecedented level of spatial detail and high degree of measurement resolution. The Houston-Galveston Bay area, possibly more than any other metropolitan area in the United States, has been adversely affected by land subsidence. Extensive subsidence, caused mainly by ground-water pumping but also by oil and gas extraction, has increased the frequency of flooding, caused extensive damage to industrial and transportation infrastructure, motivated major investments in levees, reservoirs, and surfacewater distribution facilities, and caused substantial loss of wetland habitat. Ongoing patterns of subsidence in the Houston area have been carefully monitored using borehole extensometers, Global Positioning System (GPS) and conventional spirit-leveling surveys, and more recently, an emerging technology—Interferometric Synthetic Aperture Radar (InSAR)—which enables development of spatially-detailed maps of land-surface displacement over broad areas. This report, prepared by the U.S. Geological Survey (USGS) in cooperation with the U.S. Fish and Wildlife Service, briefly summarizes the history of subsidence in the area and the local consequences of subsidence and describes the use of InSAR as one of several tools in an integrated subsidence-monitoring program in the area.

Texas

Water quality of streams in the Neshaminy Creek basin, Pennsylvania

The Neshaminy has carved a scenic route on its way to the Delaware River, thereby helping to increase the value of land. The unabated growth of nearby metropolitan areas and the multiplying needs for water and open space for water storage and recreation in southeastern Pennsylvania have become impelling forces that mark the Neshaminy valley watershed for continued development of its land and water resources. Toward this end the Neshaminy Valley Watershed Association, Inc., which came into existence June 13, 1956, is one of several organizations dedicated to land and water-resources development in the Neshaminy Creek basin. The principal objectives of the Neshaminy Valley Watershed Association are (1) to provide for future water-supply and recreation needs, (2) to safeguard against flood and drought damage, (3) to decrease stream pollution, (4) to preserve wildlife and natural beauty, (5) to reduce soil erosion and siltation, 96) to reforest marginal land, and (7) to improve and protect existing woodland. This study shows that there is a wide variance in water quality between the West Branch and the North Branch of the Neshaminy. However, the study shows no significant difference between the chemical composition of the Little Neshaminy Creek and the main stream before they come together at Rushland. Just beyond their confluence the main stream has drained more than half its total drainage area. The average flow of the stream at this location is about 85 percent of the average flow at Langhorne. The continued presence of game fish in most of Neshaminy Creek indicates a degree of water purity that characterizes this stream as suitable for recreation. However, during the summer and early fall, several small streams feeding the Neshaminy go dry. The diminished flow during these periods and during prolonged drought impairs stream quality by causing a greater concentration of dissolved solids in water. The relatively inferior water during low-flow periods, therefore, necessitates providing more water of good quality to reservoirs for emergency releases, not only to augment supply to users in needful downstream areas but also to improve stream quality by dilution.

Water Supply Paper

Causes of mortality in common loons

Summarized are necropsy results from 222 carcasses of Common Loons ( Gavia immer ) submitted to the National Wildlife Health Research Center from 1976 through 1991. The carcasses were from 18 states, and 10 or more birds each were from Minnesota, Florida, Virginia, Michigan, Wisconsin, Maine, and North Carolina. Seventy-three (33%) carcasses were emaciated, and in some of these birds emaciation was thought to be related to exposure to mercury. OVer 40% of these emaciated birds were from Florida. Trauma, including blunt trauma of unknown origin, outboard motor propeller wounds, and shooting caused the deaths of 49 (22%) loons, 30 of which were from Minnesota. Diseases, primarily avian botulism type E and aspergillosis, account for 39 (18%) moralities and lead poisoning for 14 (6%), 11 of which had fishing sinkers in their stomachs. Most of the avian botulism type E cases occurred during two outbreaks on Lake Michigan. Seven of the 14 lead-poisoned birds were from Minnesota. Nine (4%) birds died of miscellaneous causes and 9 (4%) of drowning, primarily from entanglement in nets. No diagnosis could be reached for 29 (13%) carcasses. Sample bias precludes interpretation of these data to represent actual proportional causes of mortality in the loon population. However, the sample size is sufficient to clearly identify major causes of mortality.

Minnesota, Florida, Virginia, Michigan, Wisconsin,

To understand coral disease, look at coral cells

Diseases threaten corals globally, but 40 years on their causes remain mostly unknown. We hypothesize that inconsistent application of a complete diagnostic approach to coral disease has contributed to this slow progress. We quantified methods used to investigate coral disease in 492 papers published between 1965 and 2013. Field surveys were used in 65% of the papers, followed by biodetection (43%), laboratory trials (20%), microscopic pathology (21%), and field trials (9%). Of the microscopic pathology efforts, 57% involved standard histopathology at the light microscopic level (12% of the total investigations), with the remainder dedicated to electron or fluorescence microscopy. Most (74%) biodetection efforts focused on culture or molecular characterization of bacteria or fungi from corals. Molecular and immunological tools have been used to incriminate infectious agents (mainly bacteria) as the cause of coral diseases without relating the agent to specific changes in cell and tissue pathology. Of 19 papers that declared an infectious agent as a cause of disease in corals, only one (5%) used microscopic pathology, and none fulfilled all of the criteria required to satisfy Koch&rsquo;s postulates as applied to animal diseases currently. Vertebrate diseases of skin and mucosal surfaces present challenges similar to corals when trying to identify a pathogen from a vast array of environmental microbes, and diagnostic approaches regularly used in these cases might provide a model for investigating coral diseases. We hope this review will encourage specialists of disease in domestic animals, wildlife, fish, shellfish, and humans to contribute to the emerging field of coral disease.

EcoHealth

The Gulf Coast Vulnerability Assessment: Mangrove, Tidal Emergent Marsh, Barrier Islands, and Oyster Reef

Climate, sea level rise, and urbanization are undergoing unprecedented levels of combined change and are expected to have large effects on natural resources&mdash;particularly along the Gulf of Mexico coastline (Gulf Coast). Management decisions to address these effects (i.e., adaptation) require an understanding of the relative vulnerability of various resources to these stressors. To meet this need, the four Landscape Conservation Cooperatives along the Gulf partnered with the Gulf of Mexico Alliance to conduct this Gulf Coast Vulnerability Assessment (GCVA). Vulnerability in this context incorporates the aspects of exposure and sensitivity to threats, coupled with the adaptive capacity to mitigate those threats. Potential impact and adaptive capacity reflect natural history features of target species and ecosystems. The GCVA used an expert opinion approach to qualitatively assess the vulnerability of four ecosystems: mangrove, oyster reef, tidal emergent marsh, and barrier islands, and a suite of wildlife species that depend on them. More than 50 individuals participated in the completion of the GCVA, facilitated via Ecosystem and Species Expert Teams. Of the species assessed, Kemp&rsquo;s ridley sea turtle was identified as the most vulnerable species across the Gulf Coast. Experts identified the main threats as loss of nesting habitat to sea level rise, erosion, and urbanization. Kemp&rsquo;s ridley also had an overall low adaptive capacity score due to their low genetic diversity, and higher nest site fidelity as compared to other assessed species. Tidal emergent marsh was the most vulnerable ecosystem, due in part to sea level rise and erosion. In general, avian species were more vulnerable than fish because of nesting habitat loss to sea level rise, erosion, and potential increases in storm surge. Assessors commonly indicated a lack of information regarding impacts due to projected changes in the disturbance regime, biotic interactions, and synergistic effects in both the species and habitat assessments. Many of the assessors who focused on species also identified data gaps regarding genetic information, phenotypic plasticity, life history, and species responses to past climate change and sea level rise. Regardless of information gaps, the results from the GCVA can be used to inform Gulf-wide adaptation plans. Given the scale of climatic impacts, coordinated efforts to address Gulf-wide threats to species and ecosystems will enhance the effectiveness of management actions and also have the potential to maximize the efficacy of limited funding.

Report

Gulf Coast vulnerability assessment: Mangrove, tidal emergent marsh, barrier islands and oyster reef

Climate, sea level rise, and urbanization are undergoing unprecedented levels of combined change and are expected to have large effects on natural resources—particularly along the Gulf of Mexico coastline (Gulf Coast). Management decisions to address these effects (i.e., adaptation) require an understanding of the relative vulnerability of various resources to these stressors. To meet this need, the four Landscape Conservation Cooperatives along the Gulf partnered with the Gulf of Mexico Alliance to conduct this Gulf Coast Vulnerability Assessment (GCVA). Vulnerability in this context incorporates exposure and sensitivity to threats (potential impact), coupled with the adaptive capacity to mitigate those threats. Potential impact and adaptive capacity reflect natural history features of target species and ecosystems. The GCVA used an expert opinion approach to qualitatively assess the vulnerability of four ecosystems: mangrove, oyster reef, tidal emergent marsh, and barrier islands, and a suite of wildlife species that depend on them. More than 50 individuals participated in the completion of the GCVA, facilitated via Ecosystem and Species Expert Teams. Of the species assessed, Kemp’s ridley sea turtle was identified as the most vulnerable species across the Gulf Coast. Experts identified the main threats as loss of nesting habitat to sea level rise, erosion, and urbanization. Kemp’s ridley also had an overall low adaptive capacity score due to their low genetic diversity, and higher nest site fidelity as compared to other assessed species. Tidal emergent marsh was the most vulnerable ecosystem, due in part to sea level rise and erosion. In general, avian species were more vulnerable than fish because of nesting habitat loss to sea level rise, erosion, and potential increases in storm surge. Assessors commonly indicated a lack of information regarding impacts due to projected changes in the disturbance regime, biotic interactions, and synergistic effects in both the species and habitat assessments. Many of the assessors who focused on species also identified data gaps regarding genetic information, phenotypic plasticity, life history, and species responses to past climate change and sea level rise. Regardless of information gaps, the results from the GCVA can be used to inform Gulf-wide adaptation plans. Given the scale of climatic impacts, coordinated efforts to address Gulf-wide threats to species and ecosystems will enhance the effectiveness of management actions and also have the potential to maximize the efficacy of limited funding.

Alabama, Florida, Louisiana, Mississippi, Texas

Cross-seasonal effects on waterfowl productivity: Implications under climate change

Previous efforts to relate winter-ground precipitation to subsequent reproductive success as measured by the ratio of juveniles to adults in the autumn failed to account for increased vulnerability of juvenile ducks to hunting and uncertainty in the estimated age ratio. Neglecting increased juvenile vulnerability will positively bias the mean productivity estimate, and neglecting increased vulnerability and estimation uncertainty will positively bias the year-to-year variance in productivity because raw age ratios are the product of sampling variation, the year-specific vulnerability, and year-specific reproductive success. Therefore, we estimated the effects of cumulative winter precipitation in the California Central Valley and the Mississippi Alluvial Valley on pintail ( Anas acuta ) and mallard ( Anas platyrhnchos ) reproduction, respectively, using hierarchical Bayesian methods to correct for sampling bias in productivity estimates and observation error in covariates. We applied the model to a hunter-collected parts survey implemented by the United States Fish and Wildlife Service and band recoveries reported to the United States Geological Survey Bird Banding Laboratory using data from 1961 to 2013. We compared our results to previous estimates that used simple linear regression on uncorrected age ratios from a smaller subset of years in pintail (1961–1985). Like previous analyses, we found large and consistent effects of population size and wetland conditions in prairie Canada on mallard productivity, and large effects of population size and mean latitude of the observed breeding population on pintail productivity. Unlike previous analyses, we report a large amount of uncertainty in the estimated effects of wintering-ground precipitation on pintail and mallard productivity, with considerable uncertainty in the sign of the estimated main effect, although the posterior medians of precipitation effects were consistent with past studies. We found more consistent estimates in the sign of an interaction effect between population size and precipitation, suggesting that wintering-ground precipitation has a larger effect in years of high population size, especially for pintail. When we used the estimated effects in a population model to derive a sustainable harvest and population size projection (i.e., a yield curve), there was considerable uncertainty in the effect of increased or decreased wintering-ground precipitation on sustainable harvest potential and population size. These results suggest that the mechanism of cross-seasonal effects between winter habitat and reproduction in ducks occurs through a reduction in the strength of density dependence in years of above-average wintering-ground precipitation. We suggest additional investigation of the underlying mechanisms and that habitat managers and decision-makers consider the level of uncertainty in these estimates when attempting to integrate habitat management and harvest management decisions. Collection of annual data on the status of wintering-ground habitat in a rigorous sampling framework would likely be the most direct way to improve understanding of mechanisms and inform management.

Journal of Wildlife Management

Forecasting selenium discharges to the San Francisco Bay-Delta Estuary: Ecological effects of a proposed San Luis Drain extension

Selenium discharges to the San Francisco Bay-Delta Estuary (Bay-Delta) could change significantly if federal and state agencies (1) approve an extension of the San Luis Drain to convey agricultural drainage from the western San Joaquin Valley to the North Bay (Suisun Bay, Carquinez Strait, and San Pablo Bay); (2) allow changes in flow patterns of the lower San Joaquin River and Bay-Delta while using an existing portion of the San Luis Drain to convey agricultural drainage to a tributary of the San Joaquin River; or (3) revise selenium criteria for the protection of aquatic life or issue criteria for the protection of wildlife. Understanding the biotransfer of selenium is essential to evaluating effects of selenium on Bay-Delta ecosystems. Confusion about selenium threats to fish and wildlife stem from (1) monitoring programs that do not address specific protocols necessary for an element that bioaccumulates; and (2) failure to consider the full complexity of the processes that result in selenium toxicity. Past studies show that predators are more at risk from selenium contamination than their prey, making it difficult to use traditional methods to predict risk from environmental concentrations alone. This report presents an approach to conceptualize and model the fate and effects of selenium under various load scenarios from the San Joaquin Valley. For each potential load, progressive forecasts show resulting (1) water-column concentration; (2) speciation; (3) transformation to particulate form; (4) particulate concentration; (5) bioaccumulation by invertebrates; (6) trophic transfer to predators; and (7) effects on those predators. Enough is known to establish a first-order understanding of relevant conditions, biological response, and ecological risks should selenium be discharged directly into the North Bay through a conveyance such as a proposed extension of the San Luis Drain. The approach presented here, the Bay-Delta selenium model, determines the mass, fate, and effects of selenium released to the Bay-Delta through use of (1) historical land-use, drainage, alluvial-fill, and runoff databases; (2) existing knowledge concerning biogeochemical reactions and physiological parameters of selenium (e.g., speciation, partitioning between dissolved and particulate forms, and bivalve assimilation efficiency); and (3) site-specific data mainly from 1986 to 1996 for clams and bottom-feeding fish and birds. Selenium load scenarios consider effluents from North Bay oil refineries and discharges of agricultural drainage from the San Joaquin Valley to enable calculation of (a) a composite freshwater endmember selenium concentration at the head of the estuary; and (b) a selenium concentration at a selected seawater location (Carquinez Strait) as a foundation for modeling. Analysis of selenium effects also takes into account the mode of conveyance for agricultural drainage (i.e., the San Luis Drain or San Joaquin River); and flows of the Sacramento River and San Joaquin River on a seasonal or monthly basis. Load scenarios for San Joaquin Valley mirror predictions made since 1955 of a worsening salt (and by inference, selenium) build-up exacerbated by an arid climate and massive irrigation. The reservoir of selenium in the San Joaquin Valley is sufficient to provide loading at an annual rate of approximately 42,500 pounds of selenium to a Bay-Delta disposal point for 63 to 304 years at the lower range of projections presented here, even if influx of selenium from the California Coast Ranges could be curtailed. Disposal of wastewaters on an annual basis outside of the San Joaquin Valley may slow the degradation of valley resources, but drainage alone cannot alleviate the salt and selenium build-up in the San Joaquin Valley, at least within a century. Load scenarios also show the different proportions of selenium loading to the Bay-Delta. Oil refinery loads from 1986 to 1992 ranged from 8.5 to 20 pounds of selenium per day; with treatment and cleanup, loads decreased to 3.0 pounds of selenium per day in 1999. In contrast, San Joaquin Valley agricultural drainage loads disposed of in a San Luis Drain extension could range from 45 to 117 pounds of selenium per day across a set of historical and future conditions. Components of this valley-wide load include five source subareas (i.e., Grassland, Westlands, Tulare, Kern, and Northern) defined by water and drainage management. Loads vary per subarea mainly because of proximity of the subarea to geologic sources of selenium and irrigation history. Loads from the Sacramento River, depending on flow conditions, range from 0.8 to 10 pounds of selenium per day. Loads from the San Joaquin River vary depending on restoration and flow conditions, which are considered. A consistent picture of ecological risk emerges under modeled selenium discharges from a proposed San Luis Drain extension. The threat to the estuary is greatest during low flow seasons and critically dry years. Where selenium undergoes reactions typical of low flow or longer residence time, highly problematic bioaccumulation in prey (food) is forecast. Surf scoter, greater and lesser scaup, and white sturgeon appear to be most at risk because these Bay-Delta predators feed on deposit and filter-feeding bivalves. Recent findings add Sacramento splittail and Dungeness crab to that list. During the low flow season of critically dry years, forecasted selenium concentrations in water, particulate matter, prey (diet), and predator tissue exceed guidelines with a high certainty of producing adverse effects under the most likely load scenario from a proposed San Luis Drain extension. High flows afford some protection under certain conditions in modeled San Joaquin River scenarios. However, meeting a combined goal of releasing a specific load during maximum flows and keeping selenium concentrations in the river below a certain objective to protect against bioaccumulation may not always be attainable. Management of the San Joaquin River on a constant concentration basis also could create problematic bioaccumulation during a wet year, especially during the low flow season, because high flows translate to high loads that are not always offset by seasonal river inflows. Prior to refinery cleanup, selenium contamination was sufficient to threaten reproduction in key species within the Bay-Delta ecosystems and human health advisories were posted based on selenium concentrations in tissues of diving ducks. During this time, selenium concentrations in the Bay-Delta were well below the most stringent recommended water quality criterion [1 microgram per liter (1 µg/L)]. Enhanced biogeochemical transformations to bioavailable particulate selenium and efficient bioaccumulation by bivalves characterized the system. If these biogeochemical conditions continue to prevail and agricultural selenium sources replace or exceed refinery sources, ecological forecasts suggest the risk of adverse effects will be difficult to eliminate under an out-of-valley resolution to the selenium problem. The Bay-Delta selenium model presented here is a systematic approach for conducting forecasts of the ecological effects from selenium on aquatic food webs. It is a new tool that links and models the major processes leading from loads through consumer organisms to predators. It also is a feasible approach for site-specific analysis and could provide a framework for developing new protective selenium foodweb guidelines and predator criteria. Model components that help ensure understanding ecosystems and the basis of environmental protection are (1) contaminant concentrations and speciation in sources, such as particulate material, that most influence bioavailability; (2) bioaccumulation models that calculate concentrations in diet, specifically in bivalves of the Bay-Delta that act as sensitive indicators of selenium contamination; (3) food-web type that determines what animals are threatened and when; and (4) multiple media concentrations (water, particulate material, and tissue of prey and predators) that, in-combination, determine risk or hazard.

California

Desert Tortoise translocation plan for the U.S. Department of the Army National Training Center and Fort Irwin Western Training Area

The U.S. Department of the Army proposes to commence military activity at the Fort Irwin National Training Center within the Western Training Area (WTA) and to translocate Mojave Desert tortoises ( Gopherus agassizii ; hereafter tortoise) that will be affected to the Western Training Area Translocation Site (WTATS). This desert tortoise translocation plan provides a timeline of activities, actions for which permits may be required, and guidelines for assessing the short-term and long-term success of this desert tortoise translocation. Importantly, the monitoring projects described are designed to document the ultimate effects of the Army's translocation action (not just inform future translocations elsewhere). Results from the translocation, corresponding monitoring, and research projects will inform future translocations throughout the Mojave Desert for expanding human development. The plan has three main objectives: (1) provide guidelines to achieve a safe, humane, and successful translocation of tortoises from the WTA, with minimal effect to resident desert tortoises at sites where translocated animals are released (recipient sites); (2) study translocated, resident, and reference animals (tortoises living near translocation areas but whose home ranges do not overlap those of translocated or resident tortoises) to learn as much as possible about the ecology, conservation, and management of the desert tortoise; and (3) define best management practices for successful translocation and provide metrics to evaluate success over multiple time scales, which we identify for the short- and long-term. The procedures to plan, implement, monitor, and study translocation of tortoises were written using terms and conditions outlined in the U.S. Fish and Wildlife Service Biological Opinion 2021 that described effects of the expansion of the military base boundary, as well as recommendations provided in the Desert Tortoise Recovery Plan (and 5-year review). We provide guidance on appropriate translocation timing and procedures, as well as on how tortoise ecology and habitat can best be studied to further knowledge on tortoise translocation. The plan provides analysis for landscape tortoise density and abundance estimates, suitable sites for translocation of tortoises, and short- and long-term metrics that are addressed and measured by specific monitoring and research projects that can be used to assess the success of translocation activities.

California