SEARCH · Geology Reports

Results for “Fisheries Research”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 91 records · Page 5Linked to original sources

USGS1988

Using side scan sonar data in a geographic information system to locate and display lake trout spawning habitat in the Great Lakes

The National Fisheries Research Center-Great Lakes of the U.S. Fish and Wildlife Service has extensively used a side scan sonar to survey and pinpoint lake trout spawning grounds in the Great Lakes. The Geographic Information System (GIS) of the National Ecology Research Center produced maps from the side scan sonar data showing the exact location of the spawning grounds; this will enable current stocking programs to be carried out at those locations. These maps show the geographic position (latitude and longitude) of both the color-coded primary substrate types and the secondary substrate types, which are denoted by overstrikes. The maps must be supplemented with a Loran-C navigation grid for field use. The maps are proving useful to fishery managers by locating lake trout stocking areas in Lakes Michigan and Huron, as well as to researchers who investigate habitat quality on lake trout spawning grounds.

Conference Paper↗

USGS2003

Importance of geology to fisheries management: Examples from the northeastern Gulf of Mexico

Seafloor mapping of shelf-edge habitats in the northeastern Gulf of Mexico demonstrates how sidescan-sonar imagery, seismic-reflection profiling, video data, geologic mapping, sediment sampling, and understanding the regional geologic history can enhance, support, and guide traditional fisheries research and management. New data from the Madison Swanson and Steamboat Lumps Marine Reserves reveal complex benthic habitats consisting of high-relief calcareous pinnacles, low-relief karstic hardbottom, rocky outcrops several kilometers in length, and variable thickness of fine-grained and apparently mobile coarse-grained sediments. Our data also show that certain fish alter the landscape by clearing sediment from hardbottom areas (e.g., red grouper Epinephelus morio) and by burrowing extensively in fine-grained sediment (e.g., tilefish Lopholatilus chamaeleonticeps). The seafloor imagery and geologic maps show that (a) sea level fluctuations played a dominant role in the development of the present-day regional geology, and (b) habitats (and benthic communities) are tied closely to geologic character. Understanding the geologic setting allowed for efficient and representative sampling of the biology. The geologic data can be used to set meaningful boundaries for fishery reserves and to help predict habitats in areas that are not well mapped. This interdisciplinary work added value to traditional research disciplines by providing management with integrated tools to make better decisions.

American Fisheries Society Symposium↗

USGS2012

The Columbia River Research Laboratory

The mission of the Columbia River Research Laboratory is to serve the public by providing scientific information to support the stewardship of our Nation's fish and aquatic resources, with emphasis on the Columbia River basin. As a part of the U.S. Geological Survey (USGS) Western Fisheries Research Center, we conduct objective, relevant research and seek partnerships to help fulfill this mission.

Fact Sheet↗

USGS2026

Strengthening ties between the U.S. Geological Survey and Interstate Fisheries Commissions

Fish inhabiting marine coastal and Great Lakes waters of the United States forage, migrate, and reproduce without regard to human-made boundaries. In the mid-20th century, the 32 states along the U.S. coasts and Great Lakes recognized the growing need for coordinated, interjurisdictional fisheries management and formed four interstate or international fisheries commissions through federal legislation. While distinct in their authorities, each commission shares functions to support their regional partners, including coordinating fisheries science and supporting information sharing. The U.S. Geological Survey (USGS) is a federal bureau focused exclusively on science with substantial fisheries research capacity. This empowers USGS to serve as an independent broker of scientific information, which is greatly appreciated by decision-making agencies. The USGS does not maintain broad infrastructure for engaging partners across regions. Therefore, collaboration between the USGS and fisheries commissions ensures that USGS fisheries science helps address the most pressing interjurisdictional management priorities. The USGS has worked with fisheries commissions for decades to a greater or lesser extent in each of the four coastal regions: Atlantic, Pacific, Gulf, and Great Lakes. In 2020, the USGS began efforts to cohesively strengthen these partnerships across the regions. In 2024, leadership from four USGS fisheries science centers and headquarters met with the four fisheries commissions in person for the first time during the American Fisheries Society Annual Meeting. During the gathering, the new Interstate Fisheries Commissions–USGS Partnership developed coordination mechanisms and identified shared science priorities where the USGS capacity best aligns with the science needs of the commissions. Here we describe the history of collaboration between the USGS and fisheries commissions and the emerging interregional partnership.

Fisheries↗

USGS1998

DNA and allozyme markers provide concordant estimates of population differentiation: Analyses of U.S. and Canadian populations of Yukon River fall-run chum salmon ( Oncorhynchus keta )

Although the number of genetic markers available for fisheries research has steadily increased in recent years, there is limited information on their relative utility. In this study, we compared the performance of different "classes" of genetic markers (mitochondrial DNA (mtDNA), nuclear DNA (nDNA), and allozymes) in terms of estimating levels and partitioning of genetic variation and of the relative accuracy and precision in estimating population allocations to mixed-stock fisheries. Individuals from eight populations of fall-run chum salmon ( Oncorhynchus keta ) from the Yukon River in Alaska and Canada were assayed at 25 loci. Significant differences in mitochondrial haplotype and nuclear allele frequencies were observed among five drainages. Populations from the U.S.-Canada border region were not clearly distinguishable based on multilocus allele frequencies. Although estimates of total genetic diversities were higher for the DNA loci ( H t = 0.592 and h = 0.647 for nDNA and mtDNA, respectively) compared with protein allozymes ( H t = 0.250), estimates of the extent of population differentiation were highly concordant across marker classes (mean theta = 0.010, 0.011, and 0.016 for allozymes, nDNA, and mtDNA, respectively). Simulations of mixed-stock fisheries composed of varying contributions of U.S. and Canadian populations revealed a consistent bias for overallocation of Canadian stocks when expected Canadian contributions varied from 0 to 40%, due primarily to misallocations among genetically similar border populations. No single marker class is superior for differentiating populations of this species at the spatial scale examined.

Yukon River↗

USGS2023

Characterization of fish assemblages in eleven multi-use reservoirs from North Carolina, USA

Managing impounded river systems is a recurring challenge for aquatic resource professionals because reservoirs serve multiple functions with different ecological and socioeconomic outcomes. However, research on fishes in reservoirs has disproportionally focused on recreationally and economically important species, with less attention directed toward fish assemblages despite the potential for management at the assemblage level. As such, evaluation of relationships between reservoir fish assemblages and biotic and abiotic factors and testing whether assemblage structure is affected by changing environmental conditions may deepen ecological understanding and provide insights for reservoir fisheries management. Our overall objective was to assess these relationships in 11 reservoirs from North Carolina, USA. We sampled fish assemblages in the reservoirs, which spanned five river basins representing a range of habitat conditions, using experimental gillnets and pulsed DC nighttime electrofishing. Multivariate statistical analyses indicated that taxonomic differences in fish assemblage composition among river basins followed a gradient of productivity. The top contributing species to reservoir dissimilarity were bluegill ( Lepomis macrochirus ), gizzard shad ( Dorosoma cepedianum ), black crappie ( Pomoxis nigromaculatus ), and white perch ( Morone americana ). These four species were positively associated with factors that reflect increasing eutrophic conditions in the 11 reservoirs and could, therefore, serve as indicators of reservoir productivity, anthropogenic influence, and fish assemblage structure, in addition to their key role in reservoir fisheries management. Whereas fisheries research has historically focused on assessing fish populations, our results illustrate the ecological and management insights derived from simultaneously collecting assemblage- and population-level data. Research on reservoir fish assemblages in relation to biotic and abiotic conditions may help advance fish ecology and management alike.

North Carolina↗

USGS2003

Gas bubble disease in resident fish below Grand Coulee Dam: final report of research

Fish kills have occurred in the reservoir below Grand Coulee Dam possibly due to total dissolved gas supersaturation (TDGS), which occurs when water cascades over a dam or waterfall. The highest TDGS below Grand Coulee Dam has occurred after spilling water via the outlet tubes, though TDGS from upstream sources has also been recorded. Exposure to TDGS can cause gas bubble disease in aquatic organisms. This disease, analogous to ‘the bends’ in human divers, can range from mild to fatal depending on the level of supersaturation, species, life cycle stage, condition of the fish, fish depth, and the water temperature. The USGS, Western Fisheries Research Center’s Columbia River Research Laboratory conducted field and laboratory experiments to determine the relative risks of TDGS to various species of fish in the reservoir below the dam (Rufus Woods Lake). Field work included examination of over 8000 resident fish for signs of gas bubble disease, examination of the annual growth increments of several species relative to ambient TDGS, and recording the in-situ depths and temperatures of several species using miniature recorders surgically implanted in both resident fish and triploid steelhead reared in commercial net pens. Laboratory experiments included bioassays of the progression of signs and mortality of several species at various TDGS levels. The overarching objective of these studies was to provide data to enable sound management decisions regarding the effects of TDGS in the reservoir below Grand Coulee Dam, though the data may also be applicable to other locations.

Washington↗

USGS2007

Otolith research for Puget Sound

Otoliths are hard structures located in the brain cavity of fish. These structures are formed by a buildup of calcium carbonate within a gelatinous matrix that produces light and dark bands similar to the growth rings in trees. The width of the bands corresponds to environmental factors such as temperature and food availability. As juvenile salmon encounter different environments in their migration to sea, they produce growth increments of varying widths and visible 'checks' corresponding to times of stress or change. The resulting pattern of band variations and check marks leave a record of fish growth and residence time in each habitat type. This information helps Puget Sound restoration by determining the importance of different habitats for the optimal health and management of different salmon populations. The USGS Western Fisheries Research Center (WFRC) provides otolith research findings directly to resource managers who put this information to work.

Washington↗

USGS2015

An evaluation of the efficiency of minnow traps for estimating the abundance of minnows in desert spring systems

Desert springs are sensitive aquatic ecosystems that pose unique challenges to natural resource managers and researchers. Among the most important of these is the need to accurately quantify population parameters for resident fish, particularly when the species are of special conservation concern. We evaluated the efficiency of baited minnow traps for estimating the abundance of two at-risk species, Foskett Speckled Dace Rhinichthys osculus ssp. and Borax Lake Chub Gila boraxobius , in desert spring systems in southeastern Oregon. We evaluated alternative sample designs using simulation and found that capture–recapture designs with four capture occasions would maximize the accuracy of estimates and minimize fish handling. We implemented the design and estimated capture and recapture probabilities using the Huggins closed-capture estimator. Trap capture probabilities averaged 23% and 26% for Foskett Speckled Dace and Borax Lake Chub, respectively, but differed substantially among sample locations, through time, and nonlinearly with fish body size. Recapture probabilities for Foskett Speckled Dace were, on average, 1.6 times greater than (first) capture probabilities, suggesting “trap-happy” behavior. Comparison of population estimates from the Huggins model with the commonly used Lincoln–Petersen estimator indicated that the latter underestimated Foskett Speckled Dace and Borax Lake Chub population size by 48% and by 20%, respectively. These biases were due to variability in capture and recapture probabilities. Simulation of fish monitoring that included the range of capture and recapture probabilities observed indicated that variability in capture and recapture probabilities in time negatively affected the ability to detect annual decreases by up to 20% in fish population size. Failure to account for variability in capture and recapture probabilities can lead to poor quality data and study inferences. Therefore, we recommend that fishery researchers and managers employ sample designs and estimators that can account for this variability.

Oregon↗

USGS1980

Toxicity of five forest insecticides to cutthroat trout and two species of aquatic invertebrates

The Northern Rocky Mountain region has had scattered infestation of the western spruce budworm Christoneura occidentalis since the early 1900's (U.S. DEPARTMENT OF AGRICULTURE (USDA) 1976b). On the basis of aerial surveys in 1975, TUNNOCK et al. (1976), estimated that budworm defoliation occurred on 2,278,804 acres of six National Forests in Montana. Since the use of DDT was banned in 1972, there has been a need to develop alternative insecticides with the efficacy of DDT but without its environmental risk. These insecticides must be effective in controlling the budworm, but should not persist in the environment or be toxic to other organisms. The organophosphate and carbamate insecticides are relatively nonpersistent and generally present only a moderate hazard to fish when applied according to label recommendations. The USDA Forest Service has been investigating the effectiveness of these two classes of insecticides against the budworm, and the Columbia National Fisheries Research Laboratory of the U.S. Fish and Wildlife Service has been cooperating with the Forest Service conducted pilot control projects in eastern Montana in 1975 and 1976 to determine the efficacy and environmental impact of acephate, carbaryl, and trichlorfon in controlling the western budworm (USDA 1976 b). In 1975, a similar type project was carried out in Maine with aminocarb, fenitrothion, and trichlorfon (USDA 1976 a). Acephate, fenitrothion, and trichlorfon (organophosphate insecticides) and aminocarb and carbaryl (carbamate insecticides) were selected for toxicity tests against cutthroat trout ( Salmo clarki ), a stonefly ( Pteronarcella badia ), and a freshwater amphipod ( Gammarus pseudolimnaeus ) edemic in streams of the northern Rocky Mountains. Populations of cutthroat trout inhabit lakes and streams in the Rocky Mountains which include some of the most pristine habitat and fisheries in North America. Pteronarcella and Gammarus provide forage for cutthroat trout and feed on decaying vegetation in riffle areas in streams and rivers. Stonefly naiads and amphipods were selected as test organisms because of their importance as trout food and their wide distribution in mountain stream communities. We determined the effect of various water types representing different biogeographical areas in the Intermountain West on the toxicity of these five forest insecticides.

Bulletin of Environmental Contamination and Toxico↗

USGS2020

Effects of tidally varying river flow on entrainment of juvenile salmon into Sutter and Steamboat Sloughs

Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management actions (e.g., fish guidance structures) to modify routing probabilities at this location. Main Content View Larger 1 Sponsored by the Delta Science Program and the UC Davis Muir Institute ABSTRACT Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access SFEWS Volume 19 | Issue 2 | Article 4 https://doi.org/10.15447/sfews.2021v19iss2art4 * Corresponding author: rperry@usgs.gov 1 Western Fisheries Research Center US Geological Survey Cook, WA 98605 USA 2 California Water Science Center US Geological Survey Sacramento, CA 95819 USA 3 Current address: Mid-Columbia Fish and Wildlife Conservation Office Yakima Basin Program US Fish and Wildlife Service Yakima, WA 98903 USA the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management RESEARCH Effects of Tidally Varying River Flow on Entrainment of Juvenile Salmon into Sutter and Steamboat Sloughs Jason G. Romine 1,3 , Russell W. Perry* 1 , Paul R. Stumpner 2 , Aaron R. Blake 2 , Jon R. Burau 2 2 VOLUME 19, ISSUE 2, ARTICLE 4 actions (e.g., fish guidance structures) to modify routing probabilities at this location. KEY WORDS Telemetry, juvenile salmon, migration routing, survival INTRODUCTION The Sacramento–San Joaquin River Delta (hereafter referred to as “the Delta”) is a complex series of channels and embayments in west central California of the United States. The Delta has undergone drastic transformation through construction of dikes, levees, reclaimed land, dredged canals and cuts, and water export projects (Nichols et al. 1986). The loss of habitat coupled with introduction of non-native piscivorous fishes has led to the decline of several salmonid stocks that utilize the Delta (Lindley 2009; National Marine Fisheries Service 2014). The physical complexity of the Delta poses significant challenges for understanding how juvenile salmon negotiate the complex channel network and survive in different migration routes. Yet such information is critical for understanding how water-management actions, such as operation of water diversions, influence survival of juvenile salmon. Through-Delta survival of juvenile Chinook Salmon that emigrate from the Sacramento River ranges from 10% to 80%, depending on river flow and migration route (Perry et al. 2018). The Delta can be broken down into four primary routes: (1) Sacramento River, (2) Steamboat and Sutter sloughs, (3) Georgiana Slough, and (4) Delta Cross Channel (DCC). Fish that remain in the Sacramento River consistently have the highest survival (Perry et al. 2010, 2013, 2018). However, fish that enter the interior Delta—the region to the south of the Sacramento River (Figure 1)—have the lowest survival among all routes and survive at less than half the rate of fish in the Sacramento River, likely as a result of longer migration times and exposure to non-native predators (Newman and Brandes 2010; Perry et al. 2018). On average, fish that migrate through Steamboat and Sutter sloughs exhibit survival similar to fish that remain in the Sacramento River at high flows but have lower survival at low flows (Perry et al. 2018). Because of differences in survival among migration routes, the proportion of fish that use each route affects the total survival of the population. Therefore, understanding the drivers behind fish routing in the Delta is imperative to inform management actions that help in the recovery of imperiled salmonid populations in the Central Valley. For example, Perry et al. (2013) found that total survival through the Delta could be increased by up to 7 percentage points by eliminating entrainment into Georgiana Slough and the DCC. These findings led to investigation of management actions to reduce entrainment into the DCC (Plumb et al. 2016) and Georgiana Slough (Perry et al. 2014). Both physical and non-physical barriers have been tested at the entrance to Georgiana Slough divergence (Perry et al. 2014; Romine et al. 2016). A non-physical barrier was able to reduce entrainment to the interior Delta through Georgiana Slough (Perry et al. 2014), but a floating fish-guidance structure reduced entrainment to a lesser extent (Romine et al. 2016). Research and engineering solutions to minimize entrainment have focused on the Georgiana Slough divergence, the DCC divergence, and the Old River divergence in the San Joaquin River (Buchanan et al. 2013; SJRG 2013). However, there has been little focus on understanding fish routing dynamics at other primary river junctions in the Delta, such as Sutter and Steamboat sloughs. Sutter and Steamboat sloughs diverge from the Sacramento about 10 km upstream from the DCC and Georgiana slough, and represent the first major junction that juvenile salmon encounter as they enter the Delta from the Sacramento River ( Figure 1 ). Because Sutter and Steamboat sloughs are upstream of the entrance to the interior Delta via the DCC and Georgiana Slough (Figure 1), juvenile salmon that enter Sutter and Steamboat sloughs avoid entrainment into the interior Delta where survival is low. Thus, management actions to increase entrainment could increase overall.

Sacramento–San Joaquin Delta↗

USGS2020

Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish

Simple biometric data of fish aid fishery management tasks such as monitoring the structure of fish populations and regulating recreational harvest. While these data are foundational to fishery research and management, the collection of length and weight data through physical handling of the fish is challenging as it is time consuming for personnel and can be stressful for the fish. Recent advances in imaging technology and machine learning now offer alternatives for capturing biometric data. To investigate the potential of deep convolutional neural networks to predict biometric data, several regressors were trained and evaluated on data stemming from the FishL™ Recognition System and manual measurements of length, girth, and weight. The dataset consisted of 694 fish from 22 different species common to Laurentian Great Lakes. Even with such a diverse dataset and variety of presentations by the fish, the regressors proved to be robust and achieved competitive mean percent errors in the range of 5.5 to 7.6% for length and girth on an evaluation dataset. Potential applications of this work could increase the efficiency and accuracy of routine survey work by fishery professionals and provide a means for longer‐term automated collection of fish biometric data.

Illinois, Michigan, Ohio↗

USGS2020

Improved understanding and prediction of freshwater fish communities through the use of joint species distribution models

Two primary goals in fisheries research are to ( i ) understand how habitat and environmental conditions influence the distribution of fishes across the landscape and ( ii ) make predictions about how fish communities will respond to environmental and anthropogenic change. In inland, freshwater ecosystems, quantitative approaches traditionally used to accomplish these goals largely ignore the effects of species interactions (competition, predation, mutualism) on shaping community structure, potentially leading to erroneous conclusions regarding habitat associations and unrealistic predictions about species distributions. Using two contrasting case studies, we highlight how joint species distribution models (JSDMs) can address the aforementioned deficiencies by simultaneously quantifying the effects of abiotic habitat variables and species dependencies. In particular, we show that conditional predictions of species occurrence from JSDMs can better predict species presence or absence compared with predictions that ignore species dependencies. JSDMs also allow for the estimation of site-specific probabilities of species co-occurrence, which can be informative for generating hypotheses about species interactions. JSDMs provide a flexible framework that can be used to address a variety of questions in fisheries science and management.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2021

Modern reporting methods for angler tag-return studies:Trends in data quality, choice of method, and future considerations

Angler tag-return studies are a cornerstone of fisheries research, providing insights into individual movements and estimates of exploitation, among many other applications. However, the data generated from these studies is dependent upon effective communication between anglers and scientists. As technological advances are adopted by anglers, little research has been directed at the potential benefits of incorporating modern tag reporting methods. We tagged stream-dwelling black bass Micropterus spp. and provided anglers a choice of reporting methods (telephone, email, iNaturalist app, or a “mixed-mode” combination thereof). Our objectives were to examine the fate of reported fish, quantify trends in data quality across reporting methods, and explore how geographic location and angler avidity may influence use of reporting methods. Ninety-four percent of tag reports involved the release of the fish with the tag still intact, creating opportunities for longer-term data collection. Telephone was the most commonly used reporting method; however, this method had significantly lower completeness scores (e.g., lack of photographs or specifying fate of fish) and less precise location information than other methods. In contrast, iNaturalist had the highest completeness and most precise location information but was seldom used and had increased lag times in reporting. We found no significant differences in the proportion of reporting methods used across stream locations in our study, and avid anglers appeared to be individualistic in their choice of method. Overall, our study suggests that the adoption of modern reporting methods, like email and smartphone apps, could benefit data collection efforts of angler tag-return studies. Fisheries scientists may wish to consider which reporting methods align with their specific study objectives and with the angling public of a given study area.

Arkansas, Oklahoma↗

USGS2018

Efficacy of injectable tulathromycin for reduction of vertical transmission of Renibacterium salmoninarum in Spring Chinook Salmon Oncorhynchus tshawytscha

Bacterial kidney disease (BKD) caused by Renibacterium salmoninarum (Rs) occurs nearly worldwide where wild or cultured salmonid fishes are present. Control of BKD is confounded by its two modes of transmission, horizontal (fish-to-fish) and vertical (from female parent to progeny via the eggs). A highly successful BKD control strategy employed in Pacific Northwest hatcheries culturing spring Chinook salmon ( Oncorhynchus tshawytscha ) includes: (1) injecting pre-spawning adults with a macrolide antibiotic to improve survival and reduce Rs infection levels, (2) broodstock culling of highly infected females and (3) improved fish husbandry. However, the future availability of the injectable macrolide antibiotic (erythromycin) used for adults is uncertain. This drug shortage has resulted in an urgent need to identify a replacement injectable antibiotic to ensure continued successful control of BKD. The research conducted was intended to provide information for addressing this need via preliminary tests of the safety and efficacy of a new macrolide antibiotic, injectable tulathromycin, which is sold under the trade name DRAXXIN® (Zoetis Animal Health). A long-term goal is to reduce or eliminate the use of antibiotic treatment in spring Chinook salmon hatchery culture. Non-treated females were included in the study to provide empirical data in support of this goal. A subset of pre-spawning spring Chinook salmon at Leavenworth NFH was injected on July 10, 2014 with DRAXXIN at 5 mg per kg body weight (31 fish, left pelvic fin clip). Another subset of females (30 fish, right pelvic fin clip) was left uninjected. The surviving fish (31 DRAXXIN-injected fish and 28 uninjected fish) were spawned between August 18 and September 2, 2014. Although there were apparent trends toward higher pre-spawn survival and lower Rs prevalence and levels for the DRAXXIN-injected females in comparison to the uninjected females, the differences were not statistically significant for any of the Rs assays used (P > 0.05). Based on USFWS enzyme-linked immnosorbent assay (ELISA) test results of kidney tissue samples from the spawning females, egg lots from DRAXXIN-injected and uninjected females were assigned to Rs vertical transmission risk groups (low, medium or high). A subset of 220 eyed eggs from each female was transferred to the Western Fisheries Research Center (USGS) on October 8, 2014, hatched and reared until the study was terminated on September 22, 2015. The study results provided no evidence that DRAXXIN injection of adult female Chinook salmon affected their fecundity, egg eye-up, or survival and growth of progeny fry. There was little evidence of Rs infection in progeny of either DRAXXIN-injected or uninjected females, so the effect of DRAXXIN injection on vertical transmission of Rs could not be assessed. To adequately evaluate the efficacy of DRAXXIN injection for reducing Rs vertical transmission to progeny, additional studies should be conducted with larger numbers of DRAXXIN-injected and uninjected Chinook salmon females with a greater range of Rs levels.

Report↗

USGS2020

Effects of temperature on hatching rate and early development of alligator gar and spotted gar in a laboratory setting

Water temperature influences both morphological and physiological development in fishes. However, the effects of water temperature on the early development of Alligator Gar Atractosteus spatula and Spotted Gar Lepisosteus oculatus are not well understood. Both gar species were collected from natural environments and spawned in a hatchery setting. After spawning, fertilized embryos were collected and transferred to the Oklahoma Fishery Research Laboratory, where the embryos (50–72 embryos/treatment) were placed into one of five water temperature treatments (15.5, 20.0, 23.8, 27.5, and 32.2°C) and observed over time to estimate the time to hatch and the time to reach the free-swimming stage. Both species showed an inverse relationship between temperature and the timing of hatch and advancement to free-swimming fingerlings for all treatments. In addition, Alligator Gar embryos did not develop at the coldest water temperature tested, and Alligator Gar juveniles held at the warmest temperature tested were observed with developmental abnormalities, potentially affecting their survival. The same temperature extremes had no comparable negative effect on Spotted Gar. The results of this study are useful for understanding early life history dynamics of these two species in their natural environments and can also be used by hatchery managers who are seeking to optimize their production protocols.

North American Journal of Fisheries Management↗

USGS2017

Measuring fish and their physical habitats: Versatile 2D and 3D video techniques with user-friendly software

Applications of video in fisheries research range from simple biodiversity surveys to three-dimensional (3D) measurement of complex swimming, schooling, feeding, and territorial behaviors. However, researchers lack a transparently developed, easy-to-use, general purpose tool for 3D video measurement and event logging. Thus, we developed a new measurement system, with freely available, user-friendly software, easily obtained hardware, and flexible underlying mathematical methods capable of high precision and accuracy. The software, VidSync, allows users to efficiently record, organize, and navigate complex 2D or 3D measurements of fish and their physical habitats. Laboratory tests showed submillimetre accuracy in length measurements of 50.8 mm targets at close range, with increasing errors (mostly <1%) at longer range and for longer targets. A field test on juvenile Chinook salmon ( Oncorhynchus tshawytscha ) feeding behavior in Alaska streams found that individuals within aggregations avoided the immediate proximity of their competitors, out to a distance of 1.0 to 2.9 body lengths. This system makes 3D video measurement a practical tool for laboratory and field studies of aquatic or terrestrial animal behavior and ecology.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2019

Marking otoliths of Alligator Gar by immersion in oxytetracycline

Alligator Gar Atractosteus spatula are increasingly being stocked to restore populations, making the need to identify stocked individuals important for monitoring. Oxytetracycline (OTC) immersion allows for large numbers of fish to be marked simultaneously, thus eliminating the need to handle fish individually, but protocols for doing so have not been investigated fully for this species. In this study, we sought to identify dosages of OTC (concentration and duration of exposure) that would successfully mark juvenile Alligator Gar while minimizing mortality as a result of the marking procedures. Juvenile Alligator Gar (38 ± 4.4 mm [mean ± SE]) were collected from raceways at Tishomingo National Fish Hatchery 18–22 d after hatch and were marked during transport to the Oklahoma Fishery Research Laboratory. Ten individuals per treatment (360 total individuals) were randomly placed into one of three replicates containing one of four concentration × duration combinations of Pennox 343 OTC solution. Juvenile Alligator Gar were exposed to an OTC concentration of 0 (control), 500, 600, or 700 mg/L for a duration of 4, 5, or 6 h. Asteriscus, lapillus, and sagittal otoliths were examined for mark presence at 14 d postexposure by using fluorescent microscopy. The OTC concentration and duration both affected mean mark quality similarly among otolith types. Mortality increased with increasing OTC concentration, suggesting that a balance between concentration and duration is needed to achieve marking goals. Based on our findings, batch marking of Alligator Gar was successful at OTC concentrations from 500 to 700 mg/L for 4–6 h, although immersion at 500 mg/L for 6 h and 600 mg/L for 4–6 h produced the best balance between high mark quality and low associated mortality.

North American Journal of Fisheries Management↗