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USGS2015

A conceptual framework and monitoring strategy for movement of saltwater in the coastal plain aquifer system of Virginia

A conceptual framework synthesizes previous studies to provide an understanding of conditions, processes, and relations of saltwater to groundwater withdrawal in the Virginia Coastal Plain aquifer system. A strategy for monitoring saltwater movement is based on spatial relations between the saltwater-transition zone and 612 groundwater-production wells that were regulated during 2013 by the Virginia Department of Environmental Quality. The vertical position and lateral distance and direction of the bottom of each production well’s screened interval was calculated relative to previously published groundwater chloride iso-concentration surfaces. Spatial analysis identified 81 production wells completed in the Yorktown-Eastover and Potomac aquifers that are positioned in closest proximity to the 250-milligrams-per-liter chloride surface, and from which chloride concentrations are most likely to increase above the U.S. Environmental Protection Agency’s 250-milligrams-per-liter secondary maximum-contaminant level. Observation wells are specified to distinguish vertical upconing from lateral intrusion among individual production wells. To monitor upconing, an observation well is to be collocated with each production well and completed at about the altitude of the 250-milligrams-per-liter chloride iso-concentration surface. To monitor lateral intrusion, a potential location of an observation well is projected from the bottom of each production well’s screened interval, in the lateral direction to the underlying chloride surface to a distance of 1 mile. Monitoring potential withdrawal-induced movement of saltwater in the Virginia Coastal Plain aquifer system is needed to detect increases in chloride concentration before groundwater-production wells become contaminated. An investigation was undertaken during 2014 by the U.S. Geological Survey in cooperation with the Virginia Department of Environmental Quality, to provide a sound scientific understanding of saltwater movement and guidance to implement a monitoring program. Previous studies have theorized that the saltwater originated primarily from seawater repeatedly emplaced within aquifer sediments during the past about 65 million years. Subsequent flushing by fresh groundwater has been impeded across sediments filling the Chesapeake Bay impact crater. The resulting saltwater-transition zone has been mapped to exhibit a warped and steeply mounded dome shape about centered on the impact crater, and flanked by a nearly level and shallow plateau shape to the southeast. Groundwater chloride concentrations have historically fluctuated during periods of weeks to months, probably as a result of localized vertical upconing beneath individual production wells. Lateral intrusion takes several decades or more to horizontally displace groundwater across distances of about 1 mile toward production wells. Upconing is relatively immediate, but reversible, whereas lateral intrusion under the regionally landward hydraulic gradient may slowly, but permanently reposition the saltwater-transition zone. Upconing coupled with lateral intrusion is theorized to produce composite chloride-concentration trends that vary widely over time in response to changing water demands, and evolve dynamically from hydraulic interactions among multiple neighboring production wells. Some aspects of observation-well construction and sampling are of particular importance to monitoring saltwater movement in the Virginia Coastal Plain aquifer system. Observation wells should feature screened intervals generally of no more than 10 feet that isolate distinct parts of the aquifer, and be thoroughly developed for removal of drilling fluid and introduced water. Presample purging should fully displace stratified saltwater in the well casing upward to the pump. Stable flow should be maintained as field parameters are measured and sample containers are filled with filtered water isolated from the atmosphere and unaffected by surface temperature. Groundwater samples from both upconing and lateral-intrusion observation wells should initially be collected four times per year when wells are newly established, but can be more optimally timed with withdrawal once responses in chloride concentrations can be reliably predicted. Concentrations of major ions (1) determine the dominant chemical composition of groundwater at each well, (2) establish the relative position of the well within the saltwater-transition zone, and (3) provide data quality control by calculation of sample charge balance. For these reasons, samples initially collected for the first year from newly established observation wells should be analyzed for calcium, magnesium, sodium, and potassium cations and chloride, bicarbonate, carbonate, sulfate, fluoride, and bromide anions. Inflection-point titration for alkalinity should be completed in the field. Analysis of chloride and field parameters may be adequate on a long-term basis once the dominant chemical composition at each well is established. Specific conductance may also provide a surrogate for chloride concentration depending on regulatory policy. The saltwater-movement monitoring strategy is limited and constrained. Relative monitoring needs among groundwater-production wells, and construction of observation wells, depend on the accuracy of previously mapped groundwater chloride iso-concentration surfaces. Production wells in similar proximity to saltwater can differ in aquifer hydraulic conductivity, rates of withdrawal, and screened-interval lengths. Only production wells making withdrawals reported to the Virginia Department of Environmental Quality have been accounted for; undocumented production wells can result in spurious changes in groundwater chloride concentration. Upconing observation wells should be as close as possible to corresponding production wells, so long as production wells are not damaged by borehole deviation. Projected locations of some lateral-intrusion observation wells may be precluded and require adjustment. Depths of upconing and lateral-intrusion observation wells may also require adjustment to be within the same aquifer as their corresponding production wells. Existing unused wells can be adapted as observation wells if differences from specified locations and construction are kept to a minimum and are accounted for. Where multiple production wells are in proximity, a modified monitoring approach may be needed to determine their net effect on changes in chloride concentration, and may require more than one lateral-intrusion observation well depending on the vertical positions of production-well screened intervals.

Virginia↗

USGS2012

National assessment of shoreline change: Historical shoreline change in the Hawaiian Islands

Sandy beaches of the United States are some of the most popular tourist and recreational destinations. Coastal property constitutes some of the most valuable real estate in the country. Beaches are an ephemeral environment between water and land with unique and fragile natural ecosystems that have evolved in equilibrium with the ever-changing winds, waves, and water levels. Beachfront lands are the site of intense residential and commercial development even though they are highly vulnerable to several natural hazards, including marine inundation, flooding and drainage problems, effects of storms, sea-level rise, and coastal erosion. Because the U.S. population continues to shift toward the coast where valuable coastal property is vulnerable to erosion, the U.S. Geological Survey (USGS) is conducting a national assessment of coastal change. One aspect of this effort, the National Assessment of Shoreline Change, uses shoreline position as a proxy for coastal change because shoreline position is one of the most commonly monitored indicators of environmental change (for example, Fletcher, 1992; Dolan and others, 1991; Douglas and others, 1998; Galgano and others, 1998). Additionally, the National Research Council (1990) recommended the use of historical shoreline analysis in the absence of a widely accepted model of shoreline change. A principal purpose of the USGS shoreline change research is to develop a common methodology so that shoreline change analyses for the continental U.S., portions of Hawaii, and Alaska can be updated periodically in a consistent and systematic manner. The primary objectives of this study were to (1) develop and implement improved methods of assessing and monitoring shoreline movement, and (2) improve current understanding of the processes controlling shoreline movement. Achieving these ongoing long-term objectives requires research that (1) examines the original sources of shoreline data (for example, maps, air photos, global positioning system (GPS), Light Detection and Ranging (lidar)); (2) evaluates the utility of different shoreline proxies (for example, geomorphic feature, water mark, tidal datum, elevation), including the errors associated with each; (3) investigates bias and potential errors associated with integrating different shoreline proxies from different sources; (4) develops standard, uniform methods of shoreline change analysis; (5) examines the effects of human activities on shoreline movement and rates of change; and (6) investigates alternative mathematical methods for calculating historical rates of change and uncertainties associated with them. This report summarizes historical shoreline changes on the three most densely populated islands of the eight main Hawaiian Islands: Kauai, Oahu, and Maui. The report emphasizes the hazard from “chronic” (decades to centuries) erosion at regional scales and strives to relate this hazard to the body of knowledge regarding coastal geology of Hawaii because of its potential impact on natural resources, the economy, and society. Results are organized by coastal regions (island side) and sub-regions (common littoral characteristics). This report of Hawaii coasts is part of a series of reports that include text summarizing methods, results, and implications of the results. In addition, geographic information system (GIS) data used in the analyses are made available for download (Romine and others, 2012). The rates of shoreline change and products presented in this report are not intended for site-specific analysis of shoreline movement, nor are they intended to replace any official source of shoreline change information identified by local or State government agencies, or other Federal entities that are used for regulatory purposes. Rates of shoreline change presented herein may differ from other published rates, and differences do not necessarily indicate that the other rates are inaccurate. Some discrepancies are to be expected, considering the many possible ways of determining shoreline positions and rates of change, and the inherent uncertainty in calculating these rates. Rates of shoreline change presented in this report represent shoreline movement under past conditions and are not intended for use in predicting future shoreline positions or future rates of shoreline change.

Hawai'i↗

USGS2013

Identification of metrics to monitor salt marsh integrity on National Wildlife Refuges in relation to conservation and management objectives

Executive Summary Most salt marshes in the US have been degraded by human activities, and threats from physical alterations, surrounding land-use, species invasions, and global climate change persist. Salt marshes are unique and highly productive ecosystems with high intrinsic value to wildlife, and many National Wildlife Refuges (NWRs) have been established in coastal areas to protect large tracts of salt marsh and wetland-dependent species. Various management practices are employed routinely on coastal NWRs to restore and enhance marsh integrity and ensure ecosystem sustainability. Prioritizing NWR salt marshes for application of management actions and choosing among multiple management options requires scientifically-based methods for assessing marsh condition. Monitoring is integral to structured decision-making (SDM), a formal process for decomposing a decision into its essential elements. Within a natural resource context, SDM involves identifying management objectives, alternative management actions, and expected management outcomes. The core of SDM is a set of criteria for measuring system performance and evaluating management responses. Therefore, use of SDM to frame natural resource decisions leads to logical selection of monitoring attributes that are linked explicitly to management needs. We used SDM to guide selection of variables for monitoring the ecological integrity of salt marshes within the National Wildlife Refuge System (NWRS). Our objectives were to identify indicators of salt marsh integrity that are effective across large geographic regions, responsive to a wide range of threats, and feasible to implement within funding and staffing constraints of the NWRS. In April, 2008, we engaged interdisciplinary experts in a week-long rapid prototyping SDM workshop to define the essential elements of salt marsh management decisions on refuges throughout the northeastern, southwestern, and northwestern US, corresponding to respective Regions 5, 2, and 1 of the US Fish and Wildlife Service (FWS). Through this process we identified measurable attributes for monitoring salt marsh ecosystems that are integrated into conservation practice and target management objectives. The following salt marsh attributes were identified through the SDM process either for describing state condition to determine management needs or for evaluating the achievement of management objectives: historical condition and geomorphic setting; ditch density; surrounding land use; ratio of open water area to vegetation area; rate of pesticide application; environmental contaminant concentration; change in marsh surface elevation relative to sea level rise; tidal range and groundwater level; surface topography; salinity; and species composition and abundance of vegetation, invasive species, invertebrates, nekton, and breeding and wintering birds. The identified attributes were too broadly defined to serve as operational monitoring variables. Therefore, we tested specific metrics for quantifying most of these attributes in summers of 2008 and 2009. The first four attributes in the above list can be characterized by office-based analysis of existing GIS data layers. The remaining attributes require field-based methods for assessment. We were forced to exclude a small number of attributes from field tests due to inconsistent data (pesticide application rate, environmental contaminant concentrations) or requirements that exceeded the scope of this project (change in marsh surface elevation; surface topography; benthic invertebrates; wintering birds). We evaluated potential metrics for evaluating all remaining field attributes. In partnership with NWRS biologists, we tested rapid versus intensive metrics for monitoring field attributes (tidal range and groundwater level; marsh surface elevation; salinity; and species composition and abundance of vegetation, invasive species, nekton, and breeding birds) at coastal refuges throughout FWS Region 5. Seven refuges participated in metric testing in 2008: Rachel Carson (ME), Parker River (MA), Wertheim (NY), E. B. Forsythe (NJ), Bombay Hook (DE), Prime Hook (DE), and Eastern Shore of Virginia Complex (VA). These seven and two additional refuges participated in metric testing in 2009: Rhode Island Complex (RI) and Stewart B. McKinney (CT). We based all field metrics on existing protocols for salt marsh assessment. Sampling locations were determined randomly within delineated marsh study units (MSUs) at each refuge. Detailed field methods are provided in appendices to this report. Measurements for individual metrics were averaged across samples within MSUs during each year of sampling. Each year, correlation or regression analysis was conducted on average measurements across MSUs within each attribute set to identify redundant metrics. Statistical redundancy between a pair of metrics within an attribute set (i.e., correlation or regression slopes with p-values < 0.05) was considered justification for eliminating one of the pair from the regional set of monitoring metrics. Decisions regarding metric elimination versus retention were based on feasibility of monitoring, considering such factors as sampling time, resources required, and potential for regional standardization in implementation. The result of these tests is a reduced suite of monitoring metrics that targets NWRS management decisions and is practicable for implementing on a regional scale. Based on these tests, we recommend the following list of metrics for monitoring integrity of NWRS salt marshes (marsh attribute category is in parentheses): (historical condition and geomorphic setting) position of marsh in the landscape, marsh shape, degree of fill and/or fragmentation, degree of tidal flushing, amount of aquatic edge; (ditch density) ranking of ditch density from none to severe; (surrounding land use) relative proportion of agricultural land in a 150-m buffer around the marsh, relative proportion of natural land in a 150-m buffer around the marsh, relative proportion of natural land in a 1-km buffer around the marsh; (ratio of open water area to vegetation area) ratio of open water to emergent herbaceous wetlands within the marsh; (marsh surface elevation) elevation referenced to NAVD88 in a representative area of the marsh; (tidal range and groundwater level) percent of time the marsh surface is flooded during deployment of a continuous water-level monitor at a representative marsh location, mean depth of surface flooding as measured by a continuous water-level monitor at a representative location; (salinity) salinity measured in surface water; (vegetation community) vegetation species richness using the point-intercept method in 100-m diameter survey plots, percent cover of various marsh community types within 100-m diameter survey plots; (invasive species abundance) percent cover of invasive plant species measured using the point-intercept method in 100-m diameter survey plots; (nekton community) nekton density, nekton species richness, length of Fundulus heteroclitus ; (breeding bird community) abundance of Willets counted per point during standard call-broadcast surveys, summed abundance of tidal marsh obligate species (Clapper Rail, Willet, Saltmarsh Sparrow, Seaside Sparrow) counted per point during standard call-broadcast surveys. Metrics describing the historical condition, geomorphic setting, and broad landscape features can be assessed using existing GIS databases. Our results support use of rapid methods to assess the majority of field metrics; only those used to describe the nekton community must be measured using intensive methods (throw traps or ditch nets, dependant on habitat configuration). Implementation of these metrics for quantitative assessment of NWRS salt marsh integrity in FWS Region 5 requires developing sampling designs for each refuge. Additionally, it is important to determine how the monitoring information will be used within a management context. SDM should be used to complete the analysis of salt marsh management decisions. The next steps would involve 1) prioritizing and weighting the management objectives; 2) predicting responses to individual management actions in terms of objectives and metrics; 3) using multiattribute utility theory to convert all measurable attributes to a common utility scale; 4) determining the total management benefit of each action by summing utilities across objectives; and 5) maximizing the total management benefits within cost constraints for each refuge. This process would allow the optimum management decisions for NWRS salt marshes to be selected and implemented based directly on monitoring data and current understanding of marsh responses to management actions. Monitoring the outcome of management actions would then allow new monitoring data to be incorporated into subsequent decisions.

Connecticut, Delaware, Maine, Massachusetts, New J↗

USGS2024

2023-2024 Coastal sage scrub and chaparral community monitoring for western San Diego County

Western San Diego County is dominated by shrublands supporting biologically diverse native plant and animal communities. Widespread urbanization has led to regional habitat loss and fragmentation, and many species in these shrubland communities are rare, threatened, or endangered. Large-scale, multiple-species conservation planning has resulted in a regional preserve system that focuses on these shrubland communities. Several large-scale threats are leading to type conversion from shrub-dominated to non-native invasive annual grass-dominated vegetation. To understand the changes that are occurring to native shrublands, we have developed a vegetation monitoring program with several components at multiple spatial scales, focused on quantifying coastal sage scrub (CSS) and chaparral vegetation community characteristics. Several drivers of change associated with type conversion of native shrubland to non-native annual grassland have been identified by previous research including increasing fire frequency, nitrogen deposition from air pollution, and prolonged and intense drought associated with changing climate. Loss of ecological integrity indices have been proposed as useful measures of the threat of degradation and type conversion of shrublands in San Diego County. For this study, ecological integrity is defined as a system’s ability to maintain species’ relationships and functions comparable to natural habitat in the region. Previous studies have identified the percent cover of invasive non-native annual grasses as a proxy for overall ecological degradation (loss of integrity) that is consistent across native taxonomic groups. Increased cover of non-native grass is associated with lower integrity of the shrubland vegetation community as shrub-associated plant and animal species are replaced by species preferring grassy and disturbed habitats. The objectives of this CSS and chaparral vegetation community monitoring plan are to: 1) Determine the distribution, composition, structure, and integrity of CSS and chaparral vegetation communities on conserved lands in western San Diego County, 2) Identify whether these attributes of the vegetation communities are changing over time, and 3) Evaluate relationships of known drivers of change (threats) and environmental factors in association with changes in vegetation community attributes. The CSS and chaparral vegetation community monitoring program is divided into four components: 1) vegetation mapping, 2) GIS/remote sensing office analysis of landscape-scale data, 3) permanent field plots using Unmanned Aerial Systems (UAS) and field data collections, and 4) animal and target species surveys and rapid assessment protocols. The first component, which is not detailed in this vegetation monitoring plan, aims to map vegetation communities every 10-15 years based on a classification developed for western San Diego County. High resolution aerial imagery will be used to update the 2012 vegetation map and expand it across the entire study area. The second component uses remote sensing models to annually track ecological integrity of shrublands across the study area and will include a map of areas of change and areas of stability over several decades. These landscape-scale integrity classifications will be used to analyze ecological processes, threats, and abiotic factors relative to changes to shrubland ecological integrity over time and space. The third component includes field surveys of 100 permanent plots across areas historically mapped as shrublands. Surveys in the 1930s mapped vegetation types using plot data. By using this historical classification map, we included areas that have already type-converted from shrubland to non-native annual grassland. The plots were split between CSS (55 plots) and chaparral (45 plots) and stratified into four geographical eco-subregions to guarantee coverage over small patches of habitat along the heavily developed coast. Surveys will include the collection of UAS imagery at a very high resolution. Species-level identifications will be made from the imagery based on a plant list compiled of all species detected in the plot during a thorough field survey by botanists, combined with geo-referenced samples of plant species locations. In addition, herbaceous cover will be estimated in the field using nine 1-m diameter circles (one per subplot) to obtain ocular estimates of cover for each plant species within the circle frame. Soil samples will be collected and analyzed for important element compositions. These data will be analyzed to evaluate plot-level ecological integrity based on species composition and cover. Repeated monitoring will allow evaluation of changes in vegetation attributes over time with known drivers or threats and other environmental factors. In addition, analyses will focus on indicator species and various measures of biological diversity for the vegetation communities. Finally, animal species and rare plants will be assessed using either taxa-based rapid assessment protocols or specialized species-specific protocols for rarer species. The purpose of these assessments is to document the status, habitat, and threat covariates of specific species and confirm the species composition and diversity of animal taxonomic groups (e.g., pollinators). Diversity and abundance of animal species at vegetation plots will be used to refine measures and thresholds of ecological integrity. Rapid assessment protocols for animal taxonomic groups can include multiple detection methods such as, camera traps, cover boards, and bird point counts. Pollinators will be monitored at plots using a protocol currently being developed in conjunction with but separately from this plan. Target rare plant species will be monitored using the regional Inspect and Manage (IMG) protocol that measures the status of rare plant occurrences and habitat and threat covariates over time. Species-specific animal survey methods will be refined as these species are prioritized for future monitoring. The goal of this monitoring program is to classify CSS and chaparral vegetation community integrity, identify areas of degradation across western San Diego County, and characterize drivers, and environmental factors associated with loss of ecological integrity. A combination of vegetation mapping, landscape-scale remote sensing, and field plots will be used to address all the aspects of our research questions. Data compiled and collected will be available to conservation partners to help inform future management decisions.

California↗

USGS1994

Seagrasses, dredging and light in Laguna Madre, Texas, U.S.A.

Light reduction resulting from maintenance dredging was the suspected cause of large-scale loss of seagrass cover in deep parts of Laguna Madre between surveys conducted in 1965 and 1974. Additional changes to 1988, together with an analysis of dredging frequency and intensity for different parts of the laguna, were consistent with this interpretation. Intensive monitoring of the underwater light regime and compilation of detailed environmental data for 3 months before and 15 months after a dredging project in 1988 revealed reduced light attributable to dredging in four of eight subdivisions of the study area, including the most extensive seagrass meadow in the study area. Dredging effects were strongest close to disposal areas used during this project but still were detectable on transects >1·2 km from the nearest dredge disposal area. In the subdivision of the study area where most of the dredge disposal occurred, light attenuation was increased throughout the 15 months of observation after dredging. In the seagrass meadow and the transition zone at the outer edge of the meadow, effects were evident up to 10 months after dredging. Resuspension and dispersion events caused by wind-generated waves are responsible for the propagation of dredge-related turbidity over space and time in this system.

Texas↗

USGS2011

Ecoregional-scale monitoring within conservation areas, in a rapidly changing climate

Long-term monitoring of ecological systems can prove invaluable for resource management and conservation. Such monitoring can: (1) detect instances of long-term trend (either improvement or deterioration) in monitored resources, thus providing an early-warning indication of system change to resource managers; (2) inform management decisions and help assess the effects of management actions, as well as anthropogenic and natural disturbances; and (3) provide the grist for supplemental research on mechanisms of system dynamics and cause-effect relationships (Fancy et al., 2009). Such monitoring additionally provides a snapshot of the status of monitored resources during each sampling cycle, and helps assess whether legal standards and regulations are being met. Until the last 1-2 decades, tracking and understanding changes in condition of natural resources across broad spatial extents have been infrequently attempted. Several factors, however, are facilitating the achievement of such broad-scale investigation and monitoring. These include increasing awareness of the importance of landscape context, greater prevalence of regional and global environmental stressors, and the rise of landscape-scale programs designed to manage and monitor biological systems. Such programs include the US Forest Service's Forest Inventory and Analysis (FIA) Program (Moser et al., 2008), Canada's National Forest Inventory, the 3Q Programme for monitoring agricultural landscapes of Norway (Dramstad et al., 2002), and the emerging (US) Landscape Conservation Cooperatives (USDOI Secretarial Order 3289, 2009; Anonymous, 2011). This Special Section explores the underlying design considerations, as well as many pragmatic aspects associated with program implementation and interpretation of results from broad-scale monitoring systems, particularly within the constraints of high-latitude contexts (e.g., low road density, short field season, dramatic fluctuations in temperature). Although Alaska is the focus of most papers in this Special Section, we posit that many of the issues that characterize the remote, relatively undisturbed ecosystems of high northern latitudes are widespread and thus applicable to natural-resource management and conservation across northern portions of the Holarctic ecozone and indeed anywhere broad-scale monitoring is contemplated.

Biological Conservation↗

USGS2023

Toward a national eDNA strategy for the United States

Environmental DNA (eDNA) data make it possible to measure and monitor biodiversity at unprecedented resolution and scale. As use-cases multiply and scientific consensus grows regarding the value of eDNA analysis, public agencies have an opportunity to decide how and where eDNA data fit into their mandates. Within the United States, many federal and state agencies are individually using eDNA data in various applications and developing relevant scientific expertise. A national strategy for eDNA implementation would capitalize on recent scientific developments, providing a common set of next-generation tools for natural resource management and public health protection. Such a strategy would avoid patchwork and possibly inconsistent guidelines in different agencies, smoothing the way for efficient uptake of eDNA data in management. Because eDNA analysis is already in widespread use in both ocean and freshwater settings, we focus here on applications in these environments. However, we foresee the broad adoption of eDNA analysis to meet many resource management issues across the nation because the same tools have immediate terrestrial and aerial applications.

Environmental DNA↗

USGS2006

Ground-Water Levels in Huron County, Michigan, 2004-05

In 1990, the U.S. Geological Survey (USGS) completed a study of the hydrogeology of Huron County, Michigan (Sweat, 1991). In 1993, Huron County and the USGS entered into a continuing agreement to measure water levels at selected wells throughout Huron County. As part of the agreement, USGS has operated four continuous water-level recorders, installed from 1988 to 1991 on wells in Bingham, Fairhaven, Grant, and Lake Townships (fig. 1) and summarized the data collected in an annual or bi-annual report. The agreement was altered in 2003, and beginning January 1, 2004, only the wells in Fairhaven and Lake Townships retained continuous waterlevel recorders, while the wells in Grant and Bingham Townships reverted primarily to periodic or quarterly measurement status. USGS also has provided training for County or Huron Conservation District personnel to measure the water level, on a quarterly basis, in 25 wells. USGS personnel regularly accompany County or Huron Conservation District personnel to provide a quality assurance/quality control check of all measurements being made. Water-level data collected from the 25 periodically or quarterly-measured wells is summarized in an annual or bi-annual report. In 1998, the USGS also completed a temporal and spatial analysis of the monitoring well network in Huron County (Holtschlag and Sweat, 1998). The altitude of Lake Huron and precipitation are good indicators of general climatic conditions and, therefore, provide an environmental context for ground-water levels in Huron County. Figure 2 shows the mean-monthly water-level altitude of Lake Huron, averaged from measurements made by the U.S. Army Corps of Engineers at sites near Essexville or Harbor Beach, or both (National Oceanic and Atmospheric Administration, 2003-05), and monthly precipitation measured in Bad Axe (National Oceanic and Atmospheric Administration, 2003-05). In March 2003, a new low-water level for the period from 1991 through 2005 was measured in Lake Huron. There was almost no net change in the water level of Lake Huron from January 2004 through December 2005. In 2004, annual precipitation measured in Port Hope was about 3.7 inches above normal, but precipitation measured in Bad Axe was about 1.4 inches below normal. About 14.5 inches of precipitation was measured in Bad Axe during the 2004 summer growing season (May through August), which is about the same as was measured in Port Hope during the same period. Provisional precipitation totals for 2005 were 30.7 inches for January through November in Port Hope, and about 31.7 inches for the year in Bad Axe. About 10.6 inches of precipitation was measured in Bad Axe during the 2005 summer growing season, which is about 0.2 inches more than was recorded at Port Hope during the same period. Two wells equipped with continuous-data recorders are completed in the Saginaw and Marshall aquifers in Fairhaven and Lake Townships, respectively. From January 2004 through December 2005, the net rise in the water level in the Fairhaven Township well was 0.71 ft, and the net rise in the Lake Township well was 0.98 ft. The Fairhaven Township well is drilled adjacent to Saginaw Bay (Lake Huron), and, as previously noted, there was almost no net change in the water level in Saginaw Bay over the same period. Hydrographs showing water levels are presented for the two wells equipped with continuous-data recorders. Continuous-data recorders were discontinued in the Grant and Bingham Township wells at the end of 2003 due to budget constraints. The decision of which two wells to discontinue was based on an analysis of the intrinsic value to Huron County of data from each well. The Grant Township well was selected for periodic or quarterly measurement at that time because it is completed in the glacial aquifer, which is little used for drinking water purposes or absent in much of Huron County. The Bingham Township well, which is completed in the Marshall aquifer, was selected for periodic or quarterly measurement because water levels in the well are often perturbed as a result of pumpage from nearby production wells and do not reflect baseline conditions within the aquifer. Twenty five wells were measured on a periodic or quarterly basis in 2004-05. These wells are completed in the glacial, Saginaw, and Marshall aquifers, and the Coldwater confining unit. Although each quarterly measurement only provides a “snapshot” water level (measured in feet below land surface), the data adequately define the generalized water-level trend in the aquifer near the well. Water levels in 15 quarterlymeasured wells had a net rise ranging from 0.20 to 1.31 ft for the period from January 2004 to December 2005, while water levels in 10 of the wells had a net decline ranging from 0.07 to 0.99 ft over the same period (fig. 3; table 1). Period-of-record (the time period when water levels have been measured by U.S. Geological Survey or their cooperators) minimum depths to water (high-water levels) were measured in March 2004 in two quarterly-measured wells completed in the Marshall aquifer in Lake and Hume Townships. Period-of-record maximum depths to water were measured in September 2005 in three wells completed in the Marshall aquifer near Bad Axe. Water levels in those three wells recovered about 3 to 5 ft between September and December 2005. No period-of-record minimum or maximum depths to water were measured for the period from January 2004 through December 2005 in wells completed in either the glacial and Saginaw aquifers, or the Coldwater confining unit. Hydrographs showing water levels measured in each well are presented for the 25 wells measured on a quarterly basis. Water-level trends measured for the period from January 2004 through December 2005 in other wells in Lower Michigan have similarities to those measured in Huron County wells. Several external factors influence water-level trends including proximity to nearby production wells, amount and timing of precipitation events, evapotranspiration and type of prevalent ground cover, proximity of aquifer to the surface, and hydraulic characteristics of overlying geologic materials.

Michigan↗

USGS2006

Ground-water levels in Huron County, Michigan, 2004-05

Michigan↗

USGS2007

Factors associated with sources, transport, and fate of volatile organic compounds and their mixtures in aquifers of the United States

Factors associated with sources, transport, and fate of volatile organic compounds (VOCs) in groundwater from aquifers throughout the United States were evaluated using statistical methods. Samples were collected from 1631 wells throughout the conterminous United States between 1996 and 2002 as part of the National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey. Water samples from wells completed in aquifers used to supply drinking water were analyzed for more than 50 VOCs. Wells were primarily rural domestic water supplies (1184), followed by public water supplies (216); the remaining wells (231) supplied a variety of uses. The median well depth was 50 meters. Age-date information shows that about 60% of the samples had a fraction of water recharged after 1953. Chloroform, toluene, 1,2,4-trimethylbenzene, and perchloroethene were some of the frequently detected VOCs. Concentrations generally were less than 1 ??g/L. Source factors include, in order of importance, general land-use activity, septic/sewer density, and sites where large concentrations of VOCs are potentially released, such as leaking underground storage tanks. About 10% of all samples had VOC mixtures that were associated with concentrated sources; 20% were associated with dispersed sources. Important transport factors included well/screen depth, precipitation/groundwater recharge, air temperature, and various soil characteristics. Dissolved oxygen was strongly associated with VOCs and represents the fate of many VOCs in groundwater. Well type (domestic or public water supply) was also an important explanatory factor. Results of multiple analyses show the importance of (1) accounting for both dispersed and concentrated sources of VOCs, (2) measuring dissolved oxygen when sampling wells to help explain the fate of VOCs, and (3) limiting the type of wells sampled in monitoring networks to avoid unnecessary variance in the data, or controlling for this variance during data analysis.

Environmental Science & Technology↗

USGS2018

Spatiotemporal analysis of Landsat-8 and Sentinel-2 data to support monitoring of dryland ecosystems

Drylands are the habitat and source of livelihood for about two fifths of the world’s population and are highly susceptible to climate and anthropogenic change. To understand the vulnerability of drylands to changing environmental conditions, land managers need to effectively monitor rates of past change and remote sensing offers a cost-effective means to assess and manage these vast landscapes. Here, we present a novel approach to accurately monitor land-surface phenology in drylands of the Western United States using a regression tree modeling framework that combined information collected by the Operational Land Imager (OLI) onboard Landsat 8 and the Multispectral Instrument (MSI) onboard Sentinel-2. This highly-automatable approach allowed us to precisely characterize seasonal variations in spectral vegetation indices with substantial agreement between observed and predicted values (R 2 = 0.98; Mean Absolute Error = 0.01). Derived phenology curves agreed with independent eMODIS phenological signatures of major land cover types (average r -value = 0.86), cheatgrass cover (average r -value = 0.96), and growing season proxies for vegetation productivity (R 2 = 0.88), although a systematic bias towards earlier maturity and senescence indicates enhanced monitoring capabilities associated with the use of harmonized Landsat-8 Sentinel-2 data. Overall, our results demonstrate that observations made by the MSI and OLI can be used in conjunction to accurately characterize land-surface phenology and exclusion of imagery from either sensor drastically reduces our ability to monitor dryland environments. Given the declines in MODIS performance and forthcoming decommission with no equivalent replacement planned, data fusion approaches that integrate observations from multispectral sensors will be needed to effectively monitor dryland ecosystems. While the synthetic image stacks are expected to be locally useful, the technical approach can serve a wide variety of applications such as invasive species and drought monitoring, habitat mapping, production of phenology metrics, and land-cover change modeling.

Remote Sensing↗

USGS2015

Phytoplankton blooms in estuarine and coastal waters: Seasonal patterns and key species

Phytoplankton blooms are dynamic phenomena of great importance to the functioning of estuarine and coastal ecosystems. We analysed a unique (large) collection of phytoplankton monitoring data covering 86 coastal sites distributed over eight regions in North America and Europe, with the aim of investigating common patterns in the seasonal timing and species composition of the blooms. The spring bloom was the most common seasonal pattern across all regions, typically occurring early (February–March) at lower latitudes and later (April–May) at higher latitudes. Bloom frequency, defined as the probability of unusually high biomass, ranged from 5 to 35% between sites and followed no consistent patterns across gradients of latitude, temperature, salinity, water depth, stratification, tidal amplitude or nutrient concentrations. Blooms were mostly dominated by a single species, typically diatoms (58% of the blooms) and dinoflagellates (19%). Diatom-dominated spring blooms were a common feature in most systems, although dinoflagellate spring blooms were also observed in the Baltic Sea. Blooms dominated by chlorophytes and cyanobacteria were only common in low salinity waters and occurred mostly at higher temperatures. Key bloom species across the eight regions included the diatoms Cerataulina pelagica and Dactyliosolen fragilissimus and dinoflagellates Heterocapsa triquetra and Prorocentrum cordatum . Other frequent bloom-forming taxa were diatom genera Chaetoceros , Coscinodiscus , Skeletonema , and Thalassiosira . Our meta-analysis shows that these 86 estuarine-coastal sites function as diatom-producing systems, the timing of that production varies widely, and that bloom frequency is not associated with environmental factors measured in monitoring programs. We end with a perspective on the limitations of conclusions derived from meta-analyses of phytoplankton time series, and the grand challenges remaining to understand the wide range of bloom patterns and processes that select species as bloom dominants in coastal waters.

Estuarine, Coastal and Shelf Science↗

USGS2021

Public and private tapwater: Comparative analysis of contaminant exposure and potential risk, Cape Cod, Massachusetts, USA

Background Humans are primary drivers of environmental contamination worldwide, including in drinking-water resources. In the United States (US), federal and state agencies regulate and monitor public-supply drinking water while private-supply monitoring is rare; the current lack of directly comparable information on contaminant-mixture exposures and risks between private- and public-supplies undermines tapwater (TW) consumer decision-making. Methods We compared private- and public-supply residential point-of-use TW at Cape Cod, Massachusetts, where both supplies share the same groundwater source. TW from 10 private- and 10 public-supply homes was analyzed for 487 organic, 38 inorganic, 8 microbial indicators, and 3 in vitro bioactivities. Concentrations were compared to existing protective health-based benchmarks, and aggregated Hazard Indices (HI) of regulated and unregulated TW contaminants were calculated along with ratios of in vitro exposure-activity cutoffs. Results Seventy organic and 28 inorganic constituents were detected in TW. Median detections were comparable, but median cumulative concentrations were substantially higher in public supply due to 6 chlorine–disinfected samples characterized by disinfection byproducts and corresponding lower heterotrophic plate counts. Public-supply applicable maximum contaminant (nitrate) and treatment action (lead and copper) levels were exceeded in private-supply TW samples only. Exceedances of health-based HI screening levels of concern were common to both TW supplies. Discussion These Cape Cod results indicate comparable cumulative human-health concerns from contaminant exposures in private- and public-supply TW in a shared source-water setting. Importantly, although this study’s analytical coverage exceeds that currently feasible for water purveyors or homeowners, it nevertheless is a substantial underestimation of the full breadth of contaminant mixtures documented in the environment and potentially present in drinking water. Conclusion Regardless of the supply, increased public engagement in source-water protection and drinking-water treatment, including consumer point-of-use treatment, is warranted to reduce risks associated with long-term TW contaminant exposures, especially in vulnerable populations.

Massachusetts↗

USGS2017

Exploring the use of environmental DNA to determine the species of salmon redds

Annual redd counts are used to monitor the status and trends of salmonid populations, but methods to easily and reliably determine which of sympatric species made specific redds are lacking. We explored whether environmental DNA (eDNA) analysis might prove useful for determining the species of salmon redds. We collected eDNA samples from the interstitial spaces of redds of Chinook Salmon Oncorhynchus tshawytscha, redds of Coho Salmon O. kisutch, and areas of undisturbed gravel (n = 10, each), as well as from the water column adjacent to each of those sites in the Sandy River basin, Oregon, USA during the fall of 2013. The concentrations of Chinook and Coho eDNA were quantified within each sample using real-time PCR. The water in the interstitial spaces of redds contained significantly higher eDNA concentrations of the species that made the redd than (1) the other species and (2) the adjacent water column. In contrast, neither Chinook nor Coho eDNA was significantly more concentrated than the other in the water from the interstitial spaces of undisturbed gravel. The interstitial water of undisturbed gravel contained significantly higher eDNA concentrations of Coho than the adjacent water column. In contrast, Chinook eDNA concentration was similar in the interstitial water of undisturbed gravel and the adjacent water column. Both species’ redds had significantly higher concentrations of their respective species’ eDNA than did undisturbed gravel, but conclusions were confounded by differences in the timing and locations of sampling. This initial investigation highlights the potential value and some of the complexity of using eDNA analysis to indicate redd species.

Oregon↗

USGS2020

Use of environmental DNA to detect the invasive aquatic plants Myriophyllum spicatum and Egeria densa in lakes

Environmental DNA (eDNA) analysis offers a promising tool for rapid and early detection of aquatic plant invasive species, but currently suffers from substantial unknowns that limit its widespread use in monitoring programs. We conducted the first study to test the factors related to eDNA-based detectability of 2 invasive aquatic plants, Egeria densa and Myriophyllum spicatum , over extended periods of time. Specifically, we examined how plant growth stage and abundance relate to detection in semi-natural and natural conditions. We conducted a mesocosm experiment over a 10-wk period to assess changes in eDNA detection as a function of plant growth and changing biomass. We also sampled lakes with varying species abundances and resampled a subset of lakes to test temporal variability in detection. We used multilevel occupancy modeling to determine factors associated with detection and generalized linear mixed effects modeling to assess important predictors of eDNA concentration. In mesocosm experiments, we found that detection was less reliable while plants were actively growing but improved as a function of increasing senescence. Plant abundance in tanks was a poor predictor of detection in water samples. These findings were supported by field sampling, which resulted in higher detections for E. densa during senescence periods and only weak or ambiguous relationships between eDNA and total plant abundance in lakes for both species. Within lakes, proximity to shallow photic zones and discrete plant patches were associated with increased detections and concentrations of eDNA. However, detection at the lake scale (based on 4 sampling stations) was typically successful only at the highest levels of plant abundance. Detection and concentrations of eDNA were consistently lower for M. spicatum than for E. densa in the mesocosm experiment and field sampling, suggesting that overall detectability of aquatic invasive plants varies by species. Our results support sampling during senescence periods to improve detection, but generally low levels of detection and weak relationships with plant abundance indicate that substantial hurdles remains to implement eDNA analysis for early detection of, and rapid response to, aquatic invasive plants.

Freshwater Science↗

USGS2008

Ground-water levels in Huron County, Michigan, 2002-03

In 1990, the U.S. Geological Survey (USGS) completed a study of the hydrogeology of Huron County, Michigan (Sweat, 1991). In 1993, Huron County and the USGS entered into a continuing agreement to collect water-level altitudes (hereafter referred to as water levels) at selected wells throughout Huron County. As part of the agreement, USGS has operated four continuous water-level recorders, installed from 1988 to 1991 on wells in Bingham, Fairhaven, Grant, and Lake Townships (fig. 1) and summarized the data collected in an annual or bi-annual report. The agreement was altered in 2003, and beginning January 1, 2004, only the wells in Fairhaven and Lake Townships will have continuous water-level recorders, while the wells in Grant and Bingham Townships will revert to quarterly measurement status. USGS has also provided training for County or Huron Conservation District personnel to measure the water level, on a quarterly basis, in 23 wells. USGS personnel regularly accompany County or Huron Conservation District personnel to provide a quality assurance/quality control check of all measurements being made. Water-level data collected from the 23 quarterly-measured wells is also summarized in the annual or bi-annual report. In 1998, the USGS also completed a temporal and spatial analysis of the monitoring well network in Huron County (Holtschlag and Sweat, 1998). The altitude of Lake Huron and precipitation are good indicators of general climatic conditions and, therefore, provide an environmental context for groundwater levels in Huron County. Figure 2 shows the mean-monthly water-level altitude of Lake Huron, averaged from measurements made by the U.S. Army Corps of Engineers at sites near Essexville and Harbor Beach, and monthly precipitation measured in Bad Axe (National Oceanic and Atmospheric Administration [NOAA], 2002-04; Danny Costello, NOAA hydrologist, written commun., 2003-04). In March 2003, a new low-water level for the period of this study was measured in Lake Huron (National Oceanic and Atmospheric Administration, 2003; 2004). The net decline in the water level of Lake Huron from January 1, 2002 to December 31, 2003 was about 0.3 ft. Annual precipitation in 2002 was about 0.3 inches above normal, with much of it occurring during summer months. The provisional precipitation total for 2003 is about an inch below normal (NOAA, 2003, 2004; Danny Costello, NOAA hydrologist, written commun., 2003, 2004). Four wells equipped with continuous-data recorders are completed in the glacial, Saginaw, and Marshall aquifers. Water levels in three of the four wells equipped with continuous-data recorders experienced a net decline over the period from January 2002 to December 2003, while the level in well H9r, completed in the Saginaw aquifer in Fairhaven Township adjacent to Saginaw Bay (Lake Huron), rose about 1.3 ft over the same period. Interestingly, the water level in Saginaw Bay declined about 0.3 ft over the same period. A period-ofrecord maximum depth to water was recorded in September 2003 in well H25Ar, completed in the Marshall aquifer in Lake Township. Hydrographs showing altitude of the water surface are presented for each of four wells equipped with continuous-data recorders. Twenty three wells were measured on a quarterly basis in 2002-03. These wells are completed in the Saginaw and Marshall aquifers, and Coldwater confining unit. Although each quarterly measurement only provides a “snapshot” water level, the data adequately define the “generalized” water-level trend in the aquifer near the well. The water level in one quarterly-measured well completed in the Saginaw aquifer near Saginaw Bay, had a net rise for the period from January 2002 to December 2003, while levels in the other 22 quarterly-measured wells declined about 0.5 to 2.0 ft during the same period. A period-of-record minimum depth to water (high) was measured in 2002 in two quarterly-measured wells completed in the Saginaw aquifer, although the level in one of those wells had a net decline over the period from January 2002 through December 2003. Conversely, period-of-record maximum depths to water (low) were measured in 2002 in one well completed in the Saginaw aquifer and two wells completed in the Marshall aquifer; and in 2003, in 6 of 16 wells completed in the Marshall aquifer. Near period-ofrecord maximum depths to water were measured in 2003 in two additional wells completed in the Marshall aquifer. No period-of-record minimum or maximum depths to water were measured in 2002-03 in wells completed in the Coldwater confining unit. Hydrographs showing water levels measured in each well are presented for the 23 wells measured on a quarterly basis. Water-level trends measured in 2002-03 in other wells in Lower Michigan have similarities to those measured in Huron County wells. Several external factors appear to influence water-level trends including proximity to nearby production wells, amount and timing of precipitation events, evapotranspiration and type of prevalent ground cover, proximity of aquifer to the surface, and hydraulic characteristics of overlying geologic materials.

Michigan↗

USGS2008

Comparison of two U.S. power-plant carbon dioxide emissions data sets

Estimates of fossil-fuel CO2 emissions are needed to address a variety of climate-change mitigation concerns over a broad range of spatial and temporal scales. We compared two data sets that report power-plant CO 2 emissions in the conterminous U.S. for 2004, the most recent year reported in both data sets. The data sets were obtained from the Department of Energy's Energy Information Administration (EIA) and the Environmental Protection Agency's eGRID database. Conterminous U.S. total emissions computed from the data sets differed by 3.5% for total plant emissions (electricity plus useful thermal output) and 2.3% for electricity generation only. These differences are well within previous estimates of uncertainty in annual U.S. fossil-fuel emissions. However, the corresponding average absolute differences between estimates of emissions from individual power plants were much larger, 16.9% and 25.3%, respectively. By statistical analysis, we identified several potential sources of differences between EIA and eGRID estimates for individual plants. Estimates that are based partly or entirely on monitoring of stack gases (reported by eGRID only) differed significantly from estimates based on fuel consumption (as reported by EIA). Differences in accounting methods appear to explain differences in estimates for emissions from electricity generation from combined heat and power plants, and for total and electricity generation emissions from plants that burn nonconventional fuels (e.g., biomass). Our analysis suggests the need for care in utilizing emissions data from individual power plants, and the need for transparency in documenting the accounting and monitoring methods used to estimate emissions.

Environmental Science & Technology↗

USGS1999

Refinement, validation, and application of a benthic condition index for northern Gulf of Mexico estuaries

By applying discriminant analysis to benthic macroinvertebrate data, we have developed an indicator of benthic condition for northern Gulf of Mexico estuaries. The data used were collected by the United states Environmental Protection Agency’s Environmental Monitoring and Assessment Program (EMAP) in the Louisianian Province from 1991 to 1994. This benthic index represents a linear combination of the following weighted parameters: the proportion of expected species diversity, the mean abundance of tubificid oligochaetes, the percent of total abundance represented by capitellid polychaetes, the percent of total abundance represented by bivalve mollusks, and the percent of total abundance represented by amphipods. We successfully validated and retrospectively applied the benthic index to all of the benthic data collected by EMAP in the Louisianian Province. This benthic index was also calculated for independent data collected from Pensacola Bay, Florida, in order to demonstrate its flexibility and applicability to different estuarine systems within the same biogeographic region. The benthic index is a useful and valid indicator of estuarine condition that is intended to provide environmental managers with a simple tool for assessing the health of benthic macroinvertebrate communities.

Gulf of Mexico↗