SEARCH · Geology Reports

Results for “Environmental Biology of Fishes”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 91 records · Page 5Linked to original sources

USGS2017

Vertical self-sorting behavior in juvenile Chinook salmon (Oncorhynchus tshawytscha): evidence for family differences and variation in growth and morphology

Life history variation is fundamental to the evolution of Pacific salmon and their persistence under variable conditions. We discovered that Chinook salmon sort themselves into surface- and bottom-oriented groups in tanks within days after exogenous feeding. We hypothesised that this behaviour is correlated with subsequent differences in body morphology and growth (as measured by final length and mass) observed later in life. We found consistent morphological differences between surface and bottom phenotypes. Furthermore, we found that surface and bottom orientation within each group is maintained for at least one year after the phenotypes were separated. These surface and bottom phenotypes are expressed across genetic stocks, brood years, and laboratories and we show that the proportion of surface- and bottom-oriented offspring also differed among families. Importantly, feed delivery location did not affect morphology or growth, and the surface fish were longer than bottom fish at the end of the rearing experiment. The body shape of the former correlates with wild individuals that rear in mainstem habitats and migrate in the fall as subyearlings and the latter resemble those that remain in the upper tributaries and migrate as yearling spring migrants. Our findings suggest that early self-sorting behaviour may have a genetic basis and be correlated with other phenotypic traits that are important indicators for juvenile migration timing.

Environmental Biology of Fishes↗

USGS2012

Adjusting survival estimates for premature transmitter failure: A case study from the Sacramento-San Joaquin Delta

In telemetry studies, premature tag failure causes negative bias in fish survival estimates because tag failure is interpreted as fish mortality. We used mark-recapture modeling to adjust estimates of fish survival for a previous study where premature tag failure was documented. High rates of tag failure occurred during the Vernalis Adaptive Management Plan’s (VAMP) 2008 study to estimate survival of fall-run Chinook salmon ( Oncorhynchus tshawytscha ) during migration through the San Joaquin River and Sacramento-San Joaquin Delta, California. Due to a high rate of tag failure, the observed travel time distribution was likely negatively biased, resulting in an underestimate of tag survival probability in this study. Consequently, the bias-adjustment method resulted in only a small increase in estimated fish survival when the observed travel time distribution was used to estimate the probability of tag survival. Since the bias-adjustment failed to remove bias, we used historical travel time data and conducted a sensitivity analysis to examine how fish survival might have varied across a range of tag survival probabilities. Our analysis suggested that fish survival estimates were low (95% confidence bounds range from 0.052 to 0.227) over a wide range of plausible tag survival probabilities (0.48–1.00), and this finding is consistent with other studies in this system. When tags fail at a high rate, available methods to adjust for the bias may perform poorly. Our example highlights the importance of evaluating the tag life assumption during survival studies, and presents a simple framework for evaluating adjusted survival estimates when auxiliary travel time data are available.

California↗

USGS2021

Use of non-lethal endpoints to establish water quality requirements and optima of the endangered Topeka shiner (Notropis topeka)

Water quality standards based on sub-lethal effects and performance optima for aquatic organisms, rather than onset of mortality, are more ecologically relevant for management of species of conservation concern. We investigated the effects of hypoxia, temperature (with acclimation), nitrogenous chemical compounds, and chloride on Topeka shiners ( Notropis topeka ) by monitoring behavioral responses to a reduction in oxygen and, using swimming speed, determining thermal optima and onset of effect for concentrations of nitrogenous compounds and chloride. We found ASR 50 (i.e., dissolved oxygen concentrations where 50% of fish use aquatic surface respiration) to be 1.65 mg/L and ASR 90 to be 1.08 mg/L of dissolved oxygen. Optimum temperatures for the species ranged from 17.7 to 28.0 °C, while predicted 100% mortality ranged from 33.7 to 40.3 °C, depending on the temperature at which fish were acclimated prior to experiments. Ammonia and sodium chloride reduced swimming speed at concentrations below known LC 50 values, while nitrite concentrations did not correspond with swimming speed, but rather, post-experiment mortality. This provides insight into where Topeka shiners can not only persist, but also thrive. Although swimming speed may not be a suitable metric for determining the effects of all contaminants, our focus on optima and sub-lethal effects over tolerance allows selections of the most suitable reintroduction site matching the species’ physiological profile.

Environmental Biology of Fishes↗

USGS2000

Homing and movement of yellow-phase American eels in freshwater ponds

Ten yellow-phase American eels, Anguilla rostrata, were captured from Hammond Pond, a small freshwater pond located in central Maine, U.S.A. The eels were implanted with radio transmitters and released into nearby Hermon Pond. At the same time, 10 eels were captured from Hermon Pond, implanted with radio transmitters and returned to Hermon Pond to serve as a control group. The two ponds are connected by a 1.6km section of Souadabscook Stream. We tracked the 20 eels over the 90-day duration of the experiment. Four of the ten displaced eels returned to their home pond. None of the control fish were located outside of their home pond during the study. Three of the four eels that successfully returned to their home pond did so under the darkness of the new moon and the fourth made the journey during the first quarter moon phase. Location data showed that translocated and native eels tended to occupy different areas of Hermon Pond. This study provides evidence of homing behavior in American eels living in small freshwater ponds and indications that homing activity may be linked to lunar cycle.

Environmental Biology of Fishes↗

USGS2018

Evidence of repeated long-distance movements by lake charr Salvelinus namaycush in Lake Huron

Movements and dispersal distances of acoustically-tagged adult lake charr Salvelinus namaycush were estimated based on detections at acoustic receivers in Lake Huron during 2010–2014. Most lake charr were detected only at receivers proximate to their release location or were not detected at all, but 3–9% of tagged lake charr were detected at receivers located over 100 km from their release location. Several fish made extensive repeated migrations within the lake, some at the scale of the entire main basin. Our observations show that some lake charr individuals repeat a similar pattern each year of moving long distances, and some fish were observed to show annual fidelity to presumed foraging sites in the spring at a spatial scale of approximately 200 km. Our telemetry-based estimates were minimum estimates of dispersal, as the placement of receivers within Lake Huron was not optimal for detection of lake charr and did not cover the majority of the lake. Further study of long-distance movement in lake charr is necessary to fully understand the implications of this behavior to lake charr ecology, population dynamics, and management in the Great Lakes.

Lake Huron↗

USGS2004

Major histocompatibility complex loci are associated with susceptibility of Atlantic salmon to infectious hematopoietic necrosis virus

Infectious hematopoietic necrosis virus (IHNV) is one of the most significant viral pathogens of salmonids and is a leading cause of death among cultured juvenile fish. Although several vaccine strategies have been developed, some of which are highly protective, the delivery systems are still too costly for general use by the aquaculture industry. More cost effective methods could come from the identification of genes associated with IHNV resistance for use in selective breeding. Further, identification of susceptibility genes may lead to an improved understanding of viral pathogenesis and may therefore aid in the development of preventive and therapeutic measures. Genes of the major histocompatibility complex (MHC), involved in the primary recognition of foreign pathogens in the acquired immune response, are associated with resistance to a variety of diseases in vertebrate organisms. We conducted a preliminary analysis of MHC disease association in which an aquaculture strain of Atlantic salmon was challenged with IHNV at three different doses and individual fish were genotyped at three MHC loci using denaturing gradient gel electrophoresis (PCR-DGGE), followed by sequencing of all differentiated alleles. Nine to fourteen alleles per exon-locus were resolved, and alleles potentially associated with resistance or susceptibility were identified. One allele ( Sasa -B-04) from a potentially non-classical class I locus was highly associated with resistance to infectious hematopoietic necrosis ( p < 0.01). This information can be used to design crosses of specific haplotypes for family analysis of disease associations.

Environmental Biology of Fishes↗

USGS2016

Continued feeding on Diporeia by deepwater sculpin in Lake Huron

Monitoring changes in diets of fish is essential to understanding how food web dynamics respond to changes in native prey abundances. In the Great Lakes, Diporeia, a benthic macroinvertebrate and primary food of native benthivores, declined following the introduction of invasive Dreissena mussels and these changes were reflected in fish diets. We examined the diets of deepwater sculpin Myoxocephalus thompsonii collected in bottom trawls during 2010–2014 in the main basin of Lake Huron, and compared these results to an earlier diet study (2003–2005) to assess if their diets have continued to change after a prolonged period of Dreissena mussel invasion and declined Diporeia densities. Diporeia , Mysis , Bythotrephes , and Chironomidae were consumed regularly and other diet items included ostracods, copepods, sphaerid clams, and fish eggs. The prey-specific index of relative importance calculated for each prey group indicated that Mysis importance increased at shallow (≤55 m) and mid (64–73 m) depths, while Diporeia importance increased offshore (≥82 m). The average number of Diporeia consumed per fish increased by 10.0% and Mysis decreased by 7.5%, while the frequency of occurrence of Diporeia and Mysis remained comparable between time periods. The weight of adult deepwater sculpin (80 mm and 100 mm TL bins) increased between time periods; however, the change in weight was only significant for the 80 mm TL group ( p < 0.01). Given the historical importance of Diporeia in the Great Lakes, the examination of deepwater sculpin diets provides unique insight into the trophic dynamics of the benthic community in Lake Huron.

Environmental Biology of Fishes↗

USGS2014

Evaluating changes in stream fish species richness over a 50-year time-period within a landscape context

Worldwide, streams and rivers are facing a suite of pressures that alter water quality and degrade physical habitat, both of which can lead to changes in the composition and richness of fish populations. These potential changes are of particular importance in the Southeast USA, home to one of the richest stream fish assemblages in North America. Using data from 83 stream sites in North Carolina sampled in the 1960’s and the past decade, we used hierarchical Bayesian models to evaluate relationships between species richness and catchment land use and land cover (e.g., agriculture and forest cover). In addition, we examined how the rate of change in species richness over 50 years was related to catchment land use and land cover. We found a negative and positive correlation between forest land cover and agricultural land use and average species richness, respectively. After controlling for introduced species, most (66 %) stream sites showed an increase in native fish species richness, and the magnitude of the rate of increase was positively correlated to the amount of forested land cover in the catchment. Site-specific trends in species richness were not positive, on average, until the percentage forest cover in the network catchment exceeded about 55 %. These results suggest that streams with catchments that have moderate to high (>55 %) levels of forested land in upstream network catchments may be better able to increase the number of native species at a faster rate compared to less-forested catchments.

North Carolina↗

USGS2013

Feeding habits of an endemic fish, Oxygymnocypris stewartii , in the Yarlung Zangbo River in Tibet, China

Feeding habits of Oxygymnocypris stewartii were investigated based on monthly sampling in the Yarlung Zangbo River from August 2008 to August 2009. The gut contents of 194 individuals were analysed and quantified with numerical and gravimetric methods. This species can be considered a generalized and opportunistic predator feeding both on teleosts and aquatic insects. A multivariate analysis revealed noticeable variation in O. stewartii diet composition with fish size and season. The smaller specimens fed primarily on Cobitidae and Hydropsychidae. As they grew, Cyprinidae and Chironomidae larvae became important prey. The preferred food items were teleosts in summer and autumn. For winter and spring, the predominant prey switched to chironomidae larvae. Diet composition did not significantly vary between the sexes. Finally, a significant and positive correlation between predator and prey length was found. These findings provide the fundamental information better understanding the role of this important endemic species in the Yarlung Zangbo River food web.

Tibet↗

USGS2024

Using parentage-based tagging to estimate survival of Chinook salmon fry in a large storage reservoir

Research efforts focusing on salmonid populations have highlighted the need to better understand demographic parameters for the fry and parr life stages. Monitoring these small fish presents a challenge because negative effects from handling and tagging can bias subsequent parameter estimates. Removal models and associated sampling designs represent one class of mark-recapture models with potential to be applied to very small juvenile salmon, yet existing methods associated with removal studies are not well-suited for all study environments. For example, populations residing in large storage reservoirs may yield low capture probabilities when subjected to removal sampling, making unbiased estimation of survival using traditional removal models difficult. To address this limitation, we developed a sampling design and associated model using parentage-based tagging in hatchery-raised juvenile Chinook salmon ( Oncorhynchus tshawytscha ) to estimate survival over a 2-year study period in a large storage reservoir in western Oregon, USA. Individual fish were identified to family groups, serving as replicate batch marks in a robust design removal model framework. Results from a simulation suggested that parameter estimates were unbiased even at very low capture probabilities, although the use of model constraints (i.e., covariates or constant parameter values) was necessary to achieve this. Model fitting to field data supported a trend in survival over time, with survival increasing with time since release in the first study year but decreasing in the second.

Environmental Biology of Fishes↗

USGS2023

Movement beyond the mean: decoupling sources of individual variation in brook trout movement across seasons

Movement is an important eco-evolutionary process that can shape population and ecosystem structure and function. Accordingly, a firm understanding of species movement ecology is often foundational to effective management and conservation. However, despite movement being an inherently individual-level behavior, there remains a tendency to describe dispersal and migration patterns using simple population-level processes and effects. Overlooking within- and among-individual variation in movement risks incomplete understanding of the intrinsic and extrinsic factors that govern dispersal dynamics and could potentially result in inadequate management of critical behavioral phenotypes. In this study, we monitored movement of over 100 brook trout ( Salvelinus fontinalis ) and quantified the effect of individual-level traits, season, and their interactions to better understand factors that influence vagility. Our results suggest that movement was higher in fall than in summer, particularly for fish in poor condition. But we found no significant main effects for sex, providing no evidence for sex-biased dispersal. To better understand sources of individual variation, we also allowed for sex- and season-specific residual standard deviations. In doing so, we found that, on average, movement was more variable in fall compared to summer, and that females were more variable than males in vagility. Taken together, these results demonstrate how intrinsic, individual-level traits can interact with abiotic environmental conditions to determine movement. They also highlight the potential for simple explanations of movement ecology to overlook important traits that may help predict individual-level behaviors.

Pennsylvania↗

USGS2004

Ontogenetic behavior and migration of Gulf of Mexico sturgeon, Acipenser oxyrinchus desotoi, with notes on body color and development

We observed Suwannee River Gulf sturgeon, Acipenser oxyrinchus desotoi, in the laboratory and found free embryos (first interval after hatching) hid under rocks and did not migrate. Thus, wild embryos should be at the spawning area. Larvae (first interval feeding exogenously) initiated a slow downstream migration, and some juveniles (interval with adult features) continued to migrate slowly for at least 5 months, e.g., a 1-step long larva-juvenile migration. No other population of sturgeon yet studied has this migration style. A conceptual model using this result suggests wild year-0 sturgeon have a variable downstream migration style with short-duration (short distance) migrants and long-duration (long distance) migrants. This migration style should widely disperse wild fish. The model is supported by field studies that found year-0 juveniles are widely dispersed in fresh water to river km 10. Thus, laboratory and field data agree that the entire freshwater reach of river downstream of spawning is nursery habitat. Foraging position of larvae and early juveniles was mostly on the bottom, but fish also spent hours holding position in the water column, an unusual feeding location for sturgeons. The holding position of fish above the bottom suggests benthic forage in the river is scarce and fish have evolved drift feeding. The unusual migration and foraging styles may be adaptations to rear in a river at the southern limit of the species range with poor rearing habitat (low abundance of benthic forage and high summer water temperatures). Suwannee River Gulf sturgeon and Hudson River Atlantic sturgeon, A. o. oxyrinchus, are similar for initiation of migration, early habitat preference, and diel migration. The two subspecies differ greatly for migration and foraging styles, which is likely related to major differences in the quality of rearing habitat. The differences between Atlantic sturgeon populations show the need for geographical studies to represent the behavior of an entire species.

Environmental Biology of Fishes↗

USGS2022

Growth and survival rates of dispersing free embryos and settled larvae of pallid sturgeon (Scaphirhynchus albus) in the Missouri River, Montana and North Dakota

We released nearly 1.0 million 1-day post-hatch (dph) and 5-dph pallid sturgeon ( Scaphirhynchus albus ) free embryos in the Missouri River on 1 July 2019 and sequentially captured survivors at multiple sites through a 240-km river reach to quantify daily growth and survival rates during the early life stages. Genetic analysis was used to assign captured fish to released family lots and known ages. Growth rate was similar (0.74–0.75 mm day −1 ) between the 1- and 5-dph age groups during the 3–4-day dispersal period when water temperature averaged 16.8 °C. Daily survival rate was 0.64 during 1–4 dph for the original 1-dph age group and 0.80 during 5–7 dph for the original 5-dph age group. Total survival during free embryo dispersal (hatch to 9 dph) was estimated as 0.0437. The transition from dispersing as free embryos to settling as benthic larvae was verified for fish originally released as 5 dph. Growth of settled larvae was quantified with a Gompertz model through 75 dph (9 September; 112 mm) when water temperature was 18.8–21.0 °C in the rearing areas. Settled larvae had an estimated daily survival rate of 0.96, and estimated total survival during 9–75 dph was 0.0714. This study provides the first empirical survival estimates for pallid sturgeon early life stages in natural settings and is one of few studies reporting similar information for other sturgeon species. Applications of this work extend to pallid sturgeon restoration programs where population models are being developed to predict recruitment potential and population responses to river management alternatives.

Montana, North Dakota↗

USGS2026

Climate change and water quality influence on juvenile Atlantic sturgeon aggregation in the Altamaha River, Georgia

In the summer, juvenile Atlantic sturgeon ( Acipenser oxyrinchus oxyrinchus ) are vulnerable to extreme water quality conditions (i.e., temperature, dissolved oxygen [DO], and salinity) in the estuaries they inhabit. The effects of climate change on Atlantic sturgeon are largely unknown, but it may exacerbate these water quality issues. We used a 20-year dataset from the Altamaha River estuary, Georgia, USA to fit negative binomial mixed-effects models describing the relationship between water quality and catch per net hour of juvenile Atlantic sturgeon. Water temperature and DO were significant positive predictors of catch; salinity and sampling year were significant negative predictors. The interaction between temperature and DO was also significant. Water temperature, salinity, and year were significant in explaining variability in catch. Our modeling results suggest that response to water quality depends on fish age. Next, we used global climate projections to construct future climate scenarios incorporating warming water and increased salinity. By coupling these predictions with catch models, we forecast juvenile Atlantic sturgeon catch as a proxy for distribution. Water temperature increases of 1–5 °C led to predicted catch increases of 5–24%, although this result may be influenced by aggregation behavior or sampling limitations at high temperatures. Salinity increases of 1–2 ppt led to 9–17% decreases in catch, suggesting that saltwater intrusion may limit future Atlantic sturgeon estuarine habitat availability. Our study combines a long-term dataset with a robust statistical modeling approach to offer some of the first insights into future climate change effects on juvenile Atlantic sturgeon’s southern nursery habitats.

Georgia↗

USGS2009

Salinity tolerance of non-native Asian swamp eels (Teleostei: Synbranchidae) in Florida, USA: Comparison of three populations and implications for dispersal

Three populations of non-native Asian swamp eels are established in peninsular Florida (USA), and comprise two different genetic lineages. To assess potential for these fish to penetrate estuarine habitats or use coastal waters as dispersal routes, we determined their salinity tolerances. Swamp eels from the three Florida populations were tested by gradual (chronic) salinity increases; additionally, individuals from the Miami population were tested by abrupt (acute) salinity increases. Results showed significant tolerance by all populations to mesohaline waters: Mean survival time at 14 ppt was 63 days. The Homestead population, a genetically distinct lineage, exhibited greater tolerance to higher salinity than Tampa and Miami populations. Acute experiments indicated that swamp eels were capable of tolerating abrupt shifts from 0 to 16 ppt, with little mortality over 10 days. The broad salinity tolerance demonstrated by these experiments provides evidence that swamp eels are physiologically capable of infiltrating estuarine environments and using coastal waters to invade new freshwater systems. ?? 2009 US Government.

Environmental Biology of Fishes↗

USGS2005

Effects of biotic and abiotic factors on the distribution of trout and salmon along a longitudinal stream gradient

We examined the influence of biotic and abiotic factors on the distribution, abundance, and condition of salmonid fishes along a stream gradient. We observed a longitudinal change in fish distribution with native cutthroat trout, Oncorhynchus clarki utah, and introduced brown trout, Salmo trutta, demonstrating a distinct pattern of allopatry. Cutthroat trout dominated high elevation reaches, while reaches at lower elevations were dominated by brown trout. A transition zone between these populations was associated with lower total trout abundance, consistent changes in temperature and discharge, and differences in dietary preference. Variation in cutthroat trout abundance was best explained by a model including the abundance of brown trout and diel temperature, whereas variation in brown trout abundance was best explained by a model including the abundance of cutthroat trout and discharge. These results suggest the potential for condition-mediated competition between the two species. The results from our study can aid biologists in prioritizing conservation activities and in developing robust management strategies for cutthroat trout. ?? Springer 2005.

Environmental Biology of Fishes↗

USGS1989

Behavior of fish predators and their prey: Habitat choice between open water and dense vegetation

Behavior of largemouth bass, Micropterus salmoides , and northern pike, Esox lucius , foraging on fathead minnows, Pimephales promelas , or bluegills, Lepomis macrochirus , was quantified in pools with 50% cover (half the pool had artificial stems at a density of 1000 stems m −2 ). Both predators spent most of their time in the vegetation. Largemouth bass searched for bluegills and ambushed minnows, whereas the relatively immobile northern pike ambushed all prey. Minnows were closer to predators and were captured more frequently than bluegills. Even when minnows dispersed, they moved continually and eventually wandered within striking distance of a predator. Bluegills dispersed in the cover with predators. Bass captured the few bluegills that strayed into the open and pike captured those that approached too closely in the cover. The ability of predators to capture prey while residing in habitats containing patches of dense cover may explain their residence in areas often considered to be poor ones for foraging.

Environmental Biology of Fishes↗

USGS2011

Individual condition and stream temperature influence early maturation of rainbow and steelhead trout, ncorhynchus mykiss

Alternative male phenotypes in salmonine fishes arise from individuals that mature as larger and older anadromous marine-migrants or as smaller and younger freshwater residents. To better understand the processes influencing the expression of these phenotypes we examined the influences of growth in length (fork length) and whole body lipid content in rainbow trout ( Oncorhynchus mykiss ). Fish were sampled from the John Day River basin in northeast Oregon where both anadromous ("steelhead") and freshwater resident rainbow trout coexist. Larger males with higher lipid levels had a greater probability of maturing as a resident at age-1+. Among males, 38% were maturing overall, and the odds ratios of the logistic model indicated that the probability of a male maturing early as a resident at age-1+ increased 49% (95% confidence interval (CI) = 23-81%) for every 5 mm increase in length and 33% (95% CI = 10-61%) for every 0.5% increase in whole body lipid content. There was an inverse association between individual condition and water temperature as growth was greater in warmer streams while whole body lipid content was higher in cooler streams. Our results support predictions from life history theory and further suggest that relationships between individual condition, maturation, and environmental variables (e.g., water temperature) are shaped by complex developmental and evolutionary influences.

Oregon↗