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USGS2007

Historic distribution and challenges to bison recovery in the northern Chihuahuan Desert

Ecologists and conservationists have long assumed that large grazers, including bison ( Bison bison ), did not occur in post-Pleistocene southwestern North America. This perception has been influential in framing the debate over conservation and land use in the northern Chihuahuan Desert. The lack of an evolutionary history of large grazers is being used to challenge the validity of ranching as a conservation strategy and to limit the protection and reintroduction of bison as a significant component of desert grassland ecosystems. Archeological records and historical accounts from Mexican archives from AD 700 to the 19th century document that the historic range of the bison included northern Mexico and adjoining areas in the United States. The Janos-Hidalgo bison herd, one of the few free-ranging bison herds in North America, has moved between Chihuahua, Mexico, and New Mexico, United States, since at least the 1920s. The persistence of this cross-border bison herd in Chihuahuan Desert grasslands and shrublands demonstrates that the species can persist in desert landscapes. Additional lines of evidence include the existence of grazing-adapted grasslands and the results of experimental studies that document declines in vegetation density and diversity following the removal of large grazers. The Janos-Hidalgo herd was formed with animals from various sources at the turn of the 19th century. Yet the future of the herd is compromised by differing perceptions of the ecological and evolutionary role of bison in the Desert Grasslands of North America. In Mexico they are considered native and are protected by federal law, whereas in New Mexico, they are considered non-native livestock and therefore lack conservation status or federal protection. Evidence written in Spanish of the presence of bison south of the accepted range and evidence from the disciplines of archaeology and history illustrate how differences in language and academic disciplines, in addition to international boundaries, have acted as barriers in shaping comprehensive approaches to conservation. Bison recovery in the region depends on binational cooperation.

Arizona, Chihuahua, Coahuila, Durango, New Mexico,↗

USGS2018

Cracking the code of biodiversity responses to past climate change

How individual species and entire ecosystems will respond to future climate change are among the most pressing questions facing ecologists. Past biodiversity dynamics recorded in the paleoecological archives show a broad array of responses, yet significant knowledge gaps remain. In particular, the relative roles of evolutionary adaptation, phenotypic plasticity, and dispersal in promoting survival during times of climate change have yet to be clarified. Investigating the paleo-archives offers great opportunities to understand biodiversity responses to future climate change. In this review we discuss the mechanisms by which biodiversity responds to environmental change, and identify gaps of knowledge on the role of range shifts and tolerance. We also outline approaches at the intersection of paleoecology, genomics, experiments, and predictive models that will elucidate the processes by which species have survived past climatic changes and enhance predictions of future changes in biological diversity.

Trends in Ecology and Evolution↗

USGS2002

Archive of chirp subbottom data collected during USGS cruise ORGN00005, northeastern Gulf of Mexico, 15 February-2 March 2000

In 1999, the Gulf of Mexico Fishery Management Council recommended that NOAA 's National Marine Fisheries Service establish two approximately 11-square-mile areas on the shelf edge in the northeastern Gulf of Mexico as no-fishing areas. One of the areas, the Madison-Swanson Marine Protected Area ( MPA ) lies about 100 km south of Panama City, Florida. The second area, Steamboat Lumps MPA lies about 150 km SSE of Madison-Swanson. The high-resolution seismic-reflection data contained herein were collected as part of a larger study of the effectiveness of no-fishing reserves in protecting grouper spawning aggregations. These subbottom profiles will be used in conjunction with other data to map the seafloor geology and the character and extent of benthic habitats within and surrounding the two MPAs. They show the shape and acoustic impedence of the seafloor and the thicknesses and orientations of shallow subsurface horizons. These data may be helpful in the following applications: choosing biological monitoring sites management decisions in the MPA s choosing sites for future MPA s studies of paleo-sealevel studies of the inter-relationships between seafloor geology and benthic ecology studies of sedimentary geology and geologic framework of the northeastern Gulf of Mexico

Open-File Report↗

USGS2017

Potential concerns with analytical Methods Used for the detection of Batrachochytrium salamandrivorans from archived DNA of amphibian swab samples, Oregon, USA

Taxonomic identification of pollen has historically been accomplished via light microscopy but requires specialized knowledge and reference collections, particularly when identification to lower taxonomic levels is necessary. Recently, next-generation sequencing technology has been used as a cost-effective alternative for identifying bee-collected pollen; however, this novel approach has not been tested on a spatially or temporally robust number of pollen samples. Here, we compare pollen identification results derived from light microscopy and DNA sequencing techniques with samples collected from honey bee colonies embedded within a gradient of intensive agricultural landscapes in the Northern Great Plains throughout the 2010–2011 growing seasons. We demonstrate that at all taxonomic levels, DNA sequencing was able to discern a greater number of taxa, and was particularly useful for the identification of infrequently detected species. Importantly, substantial phenological overlap did occur for commonly detected taxa using either technique, suggesting that DNA sequencing is an appropriate, and enhancing, substitutive technique for accurately capturing the breadth of bee-collected species of pollen present across agricultural landscapes. We also show that honey bees located in high and low intensity agricultural settings forage on dissimilar plants, though with overlap of the most abundantly collected pollen taxa. We highlight practical applications of utilizing sequencing technology, including addressing ecological issues surrounding land use, climate change, importance of taxa relative to abundance, and evaluating the impact of conservation program habitat enhancement efforts.

Oregon↗

USGS2009

Behavioral response and kinetics of terrestrial atrazine exposure in American toads (bufo americanus)

Amphibians in terrestrial environments obtain water through a highly vascularized pelvic patch of skin. Chemicals can also be exchanged across this patch. Atrazine (ATZ), a widespread herbicide, continues to be a concern among amphibian ecologists based on potential exposure and toxicity. Few studies have examined its impact on the terrestrial juvenile or adult stages of toads. In the current study, we asked the following questions: (1) Will juvenile American toads ( Bufo americanus ) avoid soils contaminated with ATZ? (2) Can they absorb ATZ across the pelvic patch? (3) If so, how is it distributed among the organs and eventually eliminated? We conducted a behavioral choice test between control soil and soil dosed with ecologically relevant concentrations of ATZ. In addition, we examined the uptake, distribution, and elimination of water dosed with 14 C-labeled ATZ. Our data demonstrate that toads do not avoid ATZ-laden soils. ATZ crossed the pelvic patch rapidly and reached an apparent equilibrium within 5 h. The majority of the radiolabeled ATZ ended up in the intestines, whereas the greatest concentrations were observed in the gall bladder. Thus, exposure of adult life stages of amphibians through direct uptake of ATZ from soils and runoff water should be considered in risk evaluations.

Archives of Environmental Contamination and Toxico↗

USGS2011

Baseline ecological risk assessment of the Calcasieu Estuary, Louisiana: 1. Overview and problem formulation

A remedial investigation/feasibility study (RI/FS) of the Calcasieu Estuary cooperative site was initiated in 1998. This site, which is located in the southwestern portion of Louisiana in the vicinity of Lake Charles, includes the portion of the estuary from the saltwater barrier on the Calcasieu River to Moss Lake. As part of the RI/FS, a baseline ecological risk assessment (BERA) was conducted to assess the risks to aquatic organisms and aquatic-dependent wildlife exposed to environmental contaminants. The purpose of the BERA was to determine if adverse effects on ecological receptors are occurring in the estuary; to evaluate the nature, severity, and areal extent of any such effects; and to identify the substances that are causing or substantially contributing to effects on ecological receptors. This article describes the environmental setting and site history, identifies the chemicals of potential concern, presents the exposure scenarios and conceptual model for the site, and summarizes the assessment and measurement endpoints that were used in the investigation. Two additional articles in this series describe the results of an evaluation of effects-based sediment-quality guidelines as well as an assessment of risks to benthic invertebrates associated with exposure to contaminated sediment.

Louisiana↗

USGS2011

Developing Gyrfalcon surveys and monitoring for Alaska

We developed methods to monitor the status of Gyrfalcons in Alaska. Results of surveys and monitoring will be informative for resource managers and will be useful for studying potential changes in ecological communities of the high latitudes. We estimated that the probability of detecting a Gyrfalcon at an occupied nest site was between 64% and 87% depending on observer experience and aircraft type (fixed-wing or helicopter). The probability of detection is an important factor for estimating occupancy of nesting areas, and occupancy can be used as a metric for monitoring species' status. We conclude that surveys of nesting habitat to monitor occupancy during the breeding season are practical because of the high probability of seeing a Gyrfalcon from aircraft. Aerial surveys are effective for searching sample plots or index areas in the expanse of the Alaskan terrain. Furthermore, several species of cliff-nesting birds can be surveyed concurrently from aircraft. Occupancy estimation also can be applied using data from other field search methods (e.g., from boats) that have proven useful in Alaska. We believe a coordinated broad-scale, inter-agency, collaborative approach is necessary in Alaska. Monitoring can be facilitated by collating and archiving each set of results in a secure universal repository to allow for statewide meta-analysis.

Alaska↗

USGS2013

LANDFIRE 2010 - updated data to support wildfire and ecological management

Wildfire is a global phenomenon that affects human populations and ecosystems. Wildfire effects occur at local to global scales impacting many people in different ways (Figure 1). Ecological concerns due to land use, fragmentation, and climate change impact natural resource use, allocation, and conservation. Access to consistent and current environmental data is a constant challenge, yet necessary for understanding the complexities of wildfire and ecological management. Data products and tools from the LANDFIRE Program help decision-makers to clarify problems and identify possible solutions when managing fires and natural resources. LANDFIRE supports the reduction of risk from wildfire to human lives and property, monitoring of fire danger, prediction of fire behavior on active incidents, and assessment of fire severity and impacts on natural systems [1] [2] [3]. LANDFIRE products are unique in that they are nationally consistent and provide the only complete geospatial dataset describing vegetation and wildland fuel information for the entire U.S. As such, LANDFIRE data are useful for many ecological applications [3]. For example, LANDFIRE data were recently integrated into a decision-support system for resource management and conservation decision-making along the Appalachian Trail. LANDFIRE is a joint effort between the U.S. Department of the Interior Office of Wildland Fire, U.S. Department of Agriculture Forest Service Fire & Aviation Management, and The Nature Conservancy. To date, seven versions of LANDFIRE data have been released, with each successive version improving the quality of the data, adding additional features, and/or updating the time period represented by the data. The latest version, LANDFIRE 2010 (LF 2010), released mid-2013, represents circa 2010 landscape conditions and succeeds LANDFIRE 2008 (LF 2008), which represented circa 2008 landscape conditions. LF 2010 used many of the same processes developed for the LF 2008 effort [3]. Ongoing refinement of the LANDFIRE vegetation and fuel data is necessary to improve the quality and usability of the data and to capture landscape disturbance. LANDFIRE relies on Landsat multi-spectral imagery to produce and update vegetation and fuel data. The deep Landsat archive provides data needed for vegetation classification, change analysis, and historical disturbance characterization, for which LANDFIRE has used more than 24,000 image scenes since the program’s inception. In addition, LF 2010 used airborne and spaceborne lidar, and spaceborne synthetic aperture radar (SAR) to map vegetation structure in areas where ground-based field information was lacking, including Alaska and U.S.-affiliated islands in the Caribbean and the Pacific. The mapping of insular areas is new for the 2010 data release; previous versions of LANDFIRE were limited to the conterminous U.S., Alaska, and Hawaii.

Earthzine↗

USGS1997

Activities of the National Water-Quality Assessment Program in the upper Snake River Basin, Idaho and western Wyoming, 1991-2001

In 1991, the U.S. Geological Survey (USGS) began a full-scale National Water-Quality Assessment (NAWQA) Program. The long-term goals of the NAWQA Program are to describe the status and trends in the water quality of a large part of the Nation's rivers and aquifers and to improve understanding of the primary natural and human factors that affect water-quality conditions. In meeting these goals, the program will produce water-quality, ecological, and geographic information that will be useful to policy makers and managers at the national, State, and local levels. A major component of the program is study-unit investigations, upon which national-level assessment activities are based. The program's 60 study-unit investigations are associated with principal river basins and aquifer systems throughout the Nation. Study units encompass areas from 1,200 to more than 65,000 mi2 (square miles) and incorporate about 60 to 70 percent of the Nation's water use and population served by public water supply. In 1991, the upper Snake River Basin was among the first 20 NAWQA study units selected for implementation. From 1991 to 1995, a high-intensity data-collection phase of the upper Snake River Basin study unit (fig. 1) was implemented and completed. Components of this phase are described in a report by Gilliom and others (1995). In 1997, a low-intensity phase of data collection began, and work continued on data analysis, report writing, and data documentation and archiving activities that began in 1996. Principal data-collection activities during the low-intensity phase will include monitoring of surface-water and ground-water quality, assessment of aquatic biological conditions, and continued compilation of environmental setting information.

Wyoming↗

USGS2005

Acute toxicity value extrapolation with fish and aquatic invertebrates

Assessment of risk posed by an environmental contaminant to an aquatic community requires estimation of both its magnitude of occurrence ( exposure ) and its ability to cause harm ( effects ). Our ability to estimate effects is often hindered by limited toxicological information. As a result, resource managers and environmental regulators are often faced with the need to extrapolate across taxonomic groups in order to protect the more sensitive members of the aquatic community. The goals of this effort were to 1) compile and organize an extensive body of acute toxicity data, 2) characterize the distribution of toxicant sensitivity across taxa and species, and 3) evaluate the utility of toxicity extrapolation methods based upon sensitivity relations among species and chemicals. Although the analysis encompassed a wide range of toxicants and species, pesticides and freshwater fish and invertebrates were emphasized as a reflection of available data. Although it is obviously desirable to have high-quality acute toxicity values for as many species as possible, the results of this effort allow for better use of available information for predicting the sensitivity of untested species to environmental contaminants. A software program entitled “Ecological Risk Analysis” (ERA) was developed that predicts toxicity values for sensitive members of the aquatic community using species sensitivity distributions. Of several methods evaluated, the ERA program used with minimum data sets comprising acute toxicity values for rainbow trout, bluegill, daphnia, and mysids provided the most satisfactory predictions with the least amount of data. However, if predictions must be made using data for a single species, the most satisfactory results were obtained with extrapolation factors developed for rainbow trout (0.412), bluegill (0.331), or scud (0.041). Although many specific exceptions occur, our results also support the conventional wisdom that invertebrates are generally more sensitive to contaminants than fish are.

Archives of Environmental Contamination and Toxico↗

USGS2019

Agricultural cropland extent and areas of South Asia derived using Landsat satellite 30-m time-series big-data using random forest machine learning algorithms on the Google Earth Engine cloud

The South Asia (India, Pakistan, Bangladesh, Nepal, Sri Lanka and Bhutan) has a staggering 900 million people (~43% of the population) who face food insecurity or severe food insecurity as per United Nations, Food and Agriculture Organization’s (FAO) the Food Insecurity Experience Scale (FIES). The existing coarse-resolution (>250-m) cropland maps lack precision in geo-location of individual farms and have low map accuracies. This also results in uncertainties in cropland areas calculated from such products. Thereby, the overarching goal of this study was to develop high spatial resolution (30-m or better) baseline cropland extent product of South Asia for the year 2015 using Landsat satellite time-series big-data and machine learning algorithms (MLAs) on the Google Earth Engine (GEE) cloud computing platform. To eliminate the impact of clouds, ten time-composited Landsat bands (blue, green, red, NIR, SWIR1, SWIR2, Thermal, EVI, NDVI, NDWI) were derived for each of the 3 time-periods over 12 months (monsoon: Julian days 151-300; winter: Julian days 301-365 plus 1-60; and summer: Julian days 61-150), taking the every 8-day data from Landsat-8 and 7 for the years 2013-2015, for a total of 30-bands plus global digital elevation model (GDEM) derived slope band. This 31-band mega-file big data-cube was composed for each of the 5 agro-ecological zones (AEZ’s) of South Asia and formed a baseline data for image classification and analysis. Knowledge-base for the Random Forest (RF) MLAs were developed using spatially well spread-out reference training data (N=2179) in 5 AEZs. Classification was performed on GEE for each of the 5 AEZs using well-established knowledge-based and RF MLAs on the cloud. Map accuracies were measured using independent validation data (N=1185). The survey showed that the South Asia cropland product had a producer’s accuracy of 89.9% (errors of omissions of 10.1%), user’s accuracy of 95.3% (errors of commission of 4.7%) and an overall accuracy of 88.7%. The National and sub-national (districts) areas computed from this cropland extent product explained 80-96% variability when compared with the National statistics of the South Asian Countries. The full resolution imagery can be viewed at full-resolution, by zooming-in to any location in South Asia or the world, at www.croplands.org and the cropland products of South Asia downloaded from The Land Processes Distributed Active Archive Center (LP DAAC) of National Aeronautics and Space Administration (NASA) and the United States Geological Survey (USGS): https://lpdaac.usgs.gov/products/gfsad30saafgircev001/

GIScience and Remote Sensing↗

USGS2019

Regional protocol framework for the inventory and monitoring of breeding Atlantic Coast Piping Plovers

This regional protocol provides a framework for quantifying the number of breeding pairs and productivity of Atlantic Coast piping plover (Charadrius melodus) populations during the breeding season. A primary purpose of this protocol is to standardize piping plover monitoring during the breeding season. The survey techniques described herein involve repeated visual counts of adults, nests, eggs, and chicks within a defined survey site (i.e., beach) as well as visual identification of potential threats to survival and productivity. Resulting data can be compiled and analyzed across multiple geographic units (i.e., sites, states, and recovery units) to assess progress toward recovery goals, inform local management decisions, assess management effectiveness, and improve monitoring efforts. This protocol framework was developed as part of the United States Fish and Wildlife Service (USFWS) National Wildlife Refuge System (NWRS) Inventory and Monitoring (I&M) Initiative in coordination with Ecological Services (ES) and state coordinators within the Southeast and Northeast Regions (4 and 5, respectively). Although this protocol framework is to be used primarily by NWRS to inform recovery goals, assist with local management decision-making, and meet State reporting requirements, the approach strives to assist monitoring efforts of nonNWRS partners, such as other federal agencies (e.g. National Park Service), State wildlife agencies, non-governmental organizations, and private landowners. This protocol framework and associated data management system (PIPLweb) aims to interface with existing data management and analysis tools (i.e., PIPLODES, NestStory, and PiperEx) to ensure that data collection is efficient and comparable across scales, and supports management decisions across partners. The content and structure of the protocol framework follows standards set forth in the USFWS’s How to Develop Survey Protocols: A Handbook (Version 1.0; 2013). The eight elements addressed include: introduction, sampling design, field methods, data management and analysis, reporting, personnel requirements and training, operational requirements, and references. A series of standard operating procedures (SOPs) provides greater detail on recommended methods and technical aspects of this protocol. Data entry, archival, and multi-scale analysis are handled through a secure web application (Plover Inventory and Productivity Library; PIPLweb) developed by the United States Geological Survey (USGS). When management activities and survey objectives are similar across management units, partners (Refuges, other federal agencies, State, NGOs, private) are encouraged to use this protocol framework to develop stepped-down site-specific survey protocols that include guidance for conducting on-the-ground monitoring and management plans.

Regional Protocol Framework↗

USGS2022

Using biological responses to monitor freshwater post-spill conditions over 3 years in Blacktail Creek, North Dakota, USA

A pipeline carrying unconventional oil and gas (OG) wastewater spilled approximately 11 million liters of wastewater into Blacktail Creek, North Dakota, USA. Flow of the mix of stream water and wastewater down the channel resulted in storage of contaminants in the hyporheic zone and along the banks, providing a long-term source of wastewater constituents to the stream. A multi-level investigation was used to assess the potential effects of oil and brine spills on aquatic life. In this study, we used a combination of experiments using a native fish species, Fathead Minnow ( Pimephales promelas ), field sampling of the microbial community structure, and measures of estrogenicity. The fish investigation included in situ experiments and experiments with collected site water. Estrogenicity was measured in collected site water samples, and microbial community analyses were conducted on collected sediments. During the initial post-spill investigation, February 2015, performing in situ fish bioassays was impossible because of ice conditions. However, microbial community (e.g., the presence of members of the Halomonadaceae, a family that is indicative of elevated salinity) and estrogenicity differences were compared to reference sites and point to early biological effects of the spill. We noted water column effects on in situ fish survival 6 months post-spill during June 2015. At that time, total dissolved ammonium (sum of ammonium and ammonia, TAN) was 4.41 mg NH 4 /L with an associated NH 3 of 1.09 mg/L, a concentration greater than the water quality criteria established to protect aquatic life. Biological measurements in the sediment defined early and long-lasting effects of the spill on aquatic resources. The microbial community structure was affected during all sampling events. Therefore, sediment may act as a sink for constituents spilled and as such provide an indication of continued and cumulative effects post-spill. However, lack of later water column effects may reflect pulse hyporheic flow of ammonia from shallow ground water. Combining fish toxicological, microbial community structure and estrogenicity information provides a complete ecological investigation that defines potential influences of contaminants at organismal, population, and community levels. In general, in situ bioassays have implications for the individual survival and changes at the population level, microbial community structure defines potential changes at the community level, and estrogenicity measurements define changes at the individual and molecular level. By understanding effects at these various levels of biological organization, natural resource managers can interpret how a course of action, especially for remediation/restoration, might affect a larger group of organisms in the system. The current work also reviews potential effects of additional constituents defined during chemistry investigations on aquatic resources.

North Dakota↗

USGS2008

Fish assemblages of the Casiquiare River, a corridor and zoogeographical filter for dispersal between the Orinoco and Amazon basins

Aim: The aim of this study was to determine whether the Casiquiare River functions as a free dispersal corridor or as a partial barrier (i.e. filter) for the interchange of fish species of the Orinoco and Negro/Amazon basins using species assemblage patterns according to geographical location and environmental features. Location: The Casiquiare, Upper Orinoco and Upper Negro rivers in southern Venezuela, South America. Methods: Our study was based on an analysis of species presence/absence data and environmental information (11 habitat characteristics) collected by the authors and colleagues between the years 1984 and 1999. The data set consisted of 269 sampled sites and 452 fish species (> 50,000 specimens). A wide range of habitat types was included in the samples, and the collection sites were located at various points along the entire length of the Casiquiare main channel, at multiple sites on its tributary streams, as well as at various nearby sites outside the Casiquiare drainage, within the Upper Orinoco and Upper Rio Negro river systems. Most specimens and field data used in this analysis are archived in the Museo de Ciencias Naturales in Guanare, Venezuela. We performed canonical correspondence analysis (CCA) based on species presence/absence using two versions of the data set: one that eliminated sites having < 5 species and species occurring at < 5 sites; and another that eliminated sites having < 10 species and species occurring at < 10 sites. Cluster analysis was performed on sites based on species assemblage similarity, and a separate analysis was performed on species based on CCA loadings. Results: The CCA results for the two versions of the data set were qualitatively the same. The dominant environmental axis contrasted assemblages and sites associated with blackwater vs. clearwater conditions. Longitudinal position on the Casiquiare River was correlated (r2 = 0.33) with CCA axis-1 scores, reflecting clearwater conditions nearer to its origin (bifurcation of the Orinoco) and blackwater conditions nearer to its mouth (junction with the Rio Negro). The second CCA axis was most strongly associated with habitat size and structural complexity. Species associations derived from the unweighted pair-group average clustering method and pair-wise squared Euclidean distances calculated from species loadings on CCA axes 1 and 2 showed seven ecological groupings. Cluster analysis of species assemblages according to watershed revealed a stronger influence of local environmental conditions than of geographical proximity. Main conclusions: Fish assemblage composition is more consistently associated with local environmental conditions than with geographical position within the river drainages. Nonetheless, the results support the hypothesis that the mainstem Casiquiare represents a hydrochemical gradient between clearwaters at its origin and blackwaters at its mouth, and as such appears to function as a semi-permeable barrier (environmental filter) to dispersal and faunal exchanges between the partially vicariant fish faunas of the Upper Orinoco and Upper Negro rivers. ?? 2008 The Authors.

Journal of Biogeography↗

USGS2017

Analysis of seafloor change around Dauphin Island, Alabama, 1987–2015

Dauphin Island is a 26-km-long barrier island located southwest of Mobile Bay, Alabama, in the north-central Gulf of Mexico. The island contains sandy beaches, dunes, maritime forests, freshwater ponds and intertidal wetlands, providing habitat for many endangered and threatened species. Dauphin Island also provides protection for and maintains estuarine conditions within Mississippi Sound, supporting oyster habitat and seagrasses. Wetland marshes along the Alabama mainland are protected by the island from wave-induced erosion during storms approaching from the Gulf of Mexico. Over the years, the island has been eroded by storms, most recently by Hurricane Ivan (2004) and Hurricane Katrina (2005) (Ivan/Katrina), which breached the island along its narrowest extent and caused damage to infrastructure. Along with storms producing significant episodic change, long-term beach erosion has exposed numerous pine tree stumps in the shoreface. The stumps are remnants of past maritime forests and reflect the consistent landward retreat of the island. Island change has prompted the State of Alabama to evaluate restoration alternatives to increase island resilience and sustainability by protecting and preserving the natural habitat, and by understanding the processes that influence shoreline change. Under a grant from the National Fish and Wildlife Foundation, restoration alternatives are being developed that will allow the State to make decisions on engineering and ecological restoration designs based on scientific analysis of likely outcomes and tradeoffs between impacts to stakeholder interests. Science-based assessment of the coastal zone requires accurate and up-to-date baseline data to provide a valid image of present conditions and to support modeling of coastal processes. Bathymetric elevation measurements are essential to this requirement. In August 2015, the U.S. Army Corps of Engineers and the U.S. Geological Survey conducted single beam and multibeam bathymetric surveys around Dauphin Island using a variety of shallow draft vessels and equipment. More than 95 square kilometers of seafloor was imaged. The data were integrated into a seamless digital elevation model to provide a high-resolution bathymetric map of the seafloor extending 9.5 kilometers seaward from the island’s eastern end and approximately 2 km along the rest of the island on the gulf and sound sides. Water depths range from 0.3 to 15.0 meters (m), with depths greater than 10.0 m constrained to the Mobile ship channel on the extreme eastern flank of the coverage. To measure seafloor change, two periods of historic hydrographic survey data were acquired from the National Oceanic and Atmospheric Administration National Centers for Environmental Information data archive. The two timeframes (1987–1988 and 2005–2007) were selected for their completeness of spatial coverage and because they encompass a period of significant storm impacts to the island. These timeframes were compared to each other and with the 2015 dataset to monitor elevation gain (sediment accretion) and elevation loss (sediment erosion) over time. Sediment dynamics is by far the most significant driver of nearshore elevation change in this area. The Mississippi-Alabama inner shelf is a passive margin, and other influences on elevation change (for example, tectonic adjustment, Holocene subsidence, and eustatic sea-level rise) are neither significant nor variable enough over this time period to have an imprint.

Alabama↗

USGS2020

Occurrence of a suite of stream-obligate amphibians in timberlands of Mendocino County, California, examined using environmental DNA

Stream-obligate amphibians are important indicators of ecosystem health in the Pacific Northwest, but distributional information to improve forest management is lacking in many regions. We analyzed archived DNA extracted from water samples in 60 pools in streams on private timberlands in Mendocino County, California, for 3 California Species of Special Concern—Coastal Tailed Frogs ( Ascaphus truei ), Foothill Yellow-legged Frogs ( Rana boylii ), and Southern Torrent Salamanders ( Rhyacotriton variegatus )—to better understand their distributions in the region. Detection probabilities for eDNA of Foothill Yellow-legged Frogs and Coastal Tailed Frogs were positively influenced by water temperature. eDNA occurrence for both frogs was affected by whether silt or organic matter was a dominant substrate in the sampled pool, and Foothill Yellow-legged Frog eDNA occurrence was also affected by water temperature. Foothill Yellow-legged Frog eDNA occurrence had a strong, positive association with water temperature, with occurrence unlikely below 14°C and very likely above 16°C, and a positive association with silt or organic substrates in pools, which was likely an indicator of higher-order stream reaches. In contrast, Coastal Tailed Frogs had a negative association with silt or organic substrates. Historical visual detections were generally congruent with findings using eDNA, but differences highlight important areas for further study. We did not detect Southern Torrent Salamanders using eDNA at any sites. Our study reinforces that ecological relationships of these species are varied, and shows the importance of maintaining the integrity of streams with diverse characteristics for conserving stream amphibians.

California↗

USGS2007

Proceedings of the first U.S. Geological Survey scientific information management workshop, March 21-23, 2006

In March 2006, the U.S. Geological Survey (USGS) held the first Scientific Information Management (SIM) Workshop in Reston, Virginia. The workshop brought together more than 150 SIM professionals from across the organization to discuss the range and importance of SIM problems, identify common challenges and solutions, and investigate the use and value of “communities of practice” (CoP) as mechanisms to address these issues. The 3-day workshop began with presentations of SIM challenges faced by the Long Term Ecological Research (LTER) network and two USGS programs from geology and hydrology. These presentations were followed by a keynote address and discussion of CoP by Dr. Etienne Wenger, a pioneer and leading expert in CoP, who defined them as "groups of people who share a passion for something that they know how to do and who interact regularly to learn how to do it better." Wenger addressed the roles and characteristics of CoP, how they complement formal organizational structures, and how they can be fostered. Following this motivating overview, five panelists (including Dr. Wenger) with CoP experience in different institutional settings provided their perspectives and lessons learned. The first day closed with an open discussion on the potential intersection of SIM at the USGS with SIM challenges and the potential for CoP. The second session began the process of developing a common vocabulary for both scientific data management and CoP, and a list of eight guiding principles for information management were proposed for discussion and constructive criticism. Following this discussion, 20 live demonstrations and posters of SIM tools developed by various USGS programs and projects were presented. Two community-building sessions were held to explore the next steps in 12 specific areas: Archiving of Scientific Data and Information; Database Networks; Digital Libraries; Emerging Workforce; Field Data for Small Research Projects; Knowledge Capture; Knowledge Organization Systems and Controlled Vocabularies; Large Time Series Data Sets; Metadata; Portals and Frameworks; Preservation of Physical Collections; and Scientific Data from Monitoring Programs. In about two-thirds of these areas, initial steps to forming CoP are now underway. The final afternoon included a panel in which information professionals, managers, program coordinators, and associate directors shared their perspectives on the workshop, on ways in which the USGS could better manage its scientific information, and on the use of CoP as informal mechanisms to complement formal organizational structures. The final session focused on developing the next steps, an action plan, and a communication strategy to ensure continued development.

Scientific Investigations Report↗

USGS2025

Preprint: Simulated seasonal loads of total nitrogen and total phosphorus by major source from watersheds draining to Washington waters of the Salish Sea, 2005 through 2020

The U.S. Geological Survey (USGS) and the Washington State Department of Ecology (Ecology) have developed watershed models of seasonal load estimates of total nitrogen (TN) and total phosphorus (TP) discharging into the Washington waters of the Salish Sea from 2005 through 2020. The modeling approach used was dynamic SPARROW (SPAtially Referenced Regressions On Watershed attributes), a statistical-physical watershed modeling technique, initially applied at large spatial scales to represent long-term average stream loads throughout a stream network, refined here to estimate seasonal TN and TP loads across watersheds to clarify upstream contributions from discernable point and nonpoint sources delivered to marine waters at surface water confluences along the shoreline and quantify when, where, and why they were high or low. Upstream contributing sources included permitted treated wastewater facilities, crop fertilizer, animal feeding operations, septic systems, urban land and stormwater, atmospheric deposition (TN only), nitrogen fixation by Red Alder Alnus rubra trees (TN only), and background geologic material (TP only). Instream load magnitudes and their source compositions varied widely across watersheds, and even within each watershed, yet the largest loads typically occurred in the large rivers during winter and fall when streamflow was highest. Likewise, instream loads were typically lowest in summer during low streamflow, yet the relative instream aquatic decay was highest. The seasonal storage lag component of those nonpoint sources was estimated to contribute a quarter of the seasonal instream load during winter and fall high streamflow and sometimes half of the instream load during summer low streamflow. A key aspect of Ecology’s current Puget Sound Nutrient Source Reduction Project is consideration of upstream watershed contributions of nutrients to their marine-water discharge points. Simulated seasonal loads carried by streams to 63 river mouth marine discharge points 9 ranged by several orders-of-magnitude for both TN and TP due to the spatial and seasonal differences in hydrologic flows, magnitude and timing of contributing sources, and in-stream decay. The Snohomish and Skagit Rivers discharged the largest TN and TP loads, yet the Samish River was shown to have some of the highest TN and TP yields and concentrations. Additionally, a reference scenario was developed to provide an estimate of the pre-industrial local and regional loads.

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