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USGS2025

Ecosystem-engineered infections: Beaver-modified wetlands are associated with conflicting drivers of amphibian pathogen prevalence

Beavers are ecosystem engineers and keystone species that protect freshwater resources and increase biodiversity. Beaver reintroductions are promoted for amphibian conservation, yet their impact on Batrachochytrium dendrobatidis (Bd), a pathogen linked with amphibian population declines worldwide, remains unclear. We investigated the abiotic and biotic drivers of Bd prevalence in Columbia spotted frogs ( Rana luteiventris ) and western toads ( Anaxyrus boreas ) in 20 beaver-modified and 23 non-beaver wetlands in Glacier National Park, USA. We found that beavers increased wetland hydroperiod, which was associated with higher Bd prevalence. However, beavers also reduced wetland canopy cover, which was associated with lower Bd prevalence. Our models also predicted higher Bd prevalence associated with higher adult density of both species of amphibians, although species’ densities were similar in beaver-modified and non-beaver wetlands. These results suggest that beavers have a cumulatively negligible net effect on Bd prevalence owing to their effects on both hydroperiod and canopy cover, which is encouraging for amphibian conservation. Our findings also suggest that decreasing canopy cover may be a potential management option to reduce Bd prevalence. In addition, these findings indicate that beaver-mimicking restoration projects may harm amphibian populations if they increase wetland hydroperiods without reducing canopy cover.

Montana↗

USGS2001

Pesticides are involved with population declines of amphibians in the California Sierra Nevadas

Several species of frogs and toads are in serious decline in the Sierra Nevada Mountains of California. These species include the threatened red-legged frog ( Rana aurora ), foothill yellow-legged frog ( R. boylii ), mountain yellow-legged frog ( R. muscosa ), Cascades frog ( Rana cascadae ), western toad ( Bufo boreas ) and Yosemite toad ( B. canorus ). For many of these species current distributions are down to 10% of historical ranges. Several factors including introduced predators, habitat loss, and ultraviolet radiation have been suggested as causes of these declines. Another probable cause is air-borne pesticides from the Central Valley of California. The Central Valley, especially the San Joaquin Valley, is a major agricultural region where millions of pounds of active ingredient pesticides are applied each year (http://www.cdpr.ca.gov/dprdatabase.htm). Prevailing westerly winds from the Pacific Coast transport these pesticides into the into the Sierras.

Scientific World Journal↗

USGS2012

Rapid increases and time-lagged declines in amphibian occupancy after wildfire

Climate change is expected to increase the frequency and severity of drought and wildfire. Aquatic and moisture-sensitive species, such as amphibians, may be particularly vulnerable to these modified disturbance regimes because large wildfires often occur during extended droughts and thus may compound environmental threats. However, understanding of the effects of wildfires on amphibians in forests with long fire-return intervals is limited. Numerous stand-replacing wildfires have occurred since 1988 in Glacier National Park (Montana, U.S.A.), where we have conducted long-term monitoring of amphibians. We measured responses of 3 amphibian species to fires of different sizes, severity, and age in a small geographic area with uniform management. We used data from wetlands associated with 6 wildfires that burned between 1988 and 2003 to evaluate whether burn extent and severity and interactions between wildfire and wetland isolation affected the distribution of breeding populations. We measured responses with models that accounted for imperfect detection to estimate occupancy during prefire (0-4 years) and different postfire recovery periods. For the long-toed salamander (Ambystoma macrodactylum) and Columbia spotted frog (Rana luteiventris), occupancy was not affected for 6 years after wildfire. But 7-21 years after wildfire, occupancy for both species decreased ≥ 25% in areas where >50% of the forest within 500 m of wetlands burned. In contrast, occupancy of the boreal toad (Anaxyrus boreas) tripled in the 3 years after low-elevation forests burned. This increase in occupancy was followed by a gradual decline. Our results show that accounting for magnitude of change and time lags is critical to understanding population dynamics of amphibians after large disturbances. Our results also inform understanding of the potential threat of increases in wildfire frequency or severity to amphibians in the region.

Montana↗

USGS2010

Unbiased survival estimates and evidence for skipped breeding opportunities in females

1. &ensp;Estimates of demographic parameters for females, in many organisms, are sparse. This is particularly worrisome as more and more species are faced with high extinction probabilities and conservation increasingly depends on actions dictated by complex predictive models that require accurate estimates of demographic parameters for each sex and species. 2. &ensp;This study assesses demographic parameters, specifically temporary emigration and survival, for females, a class that has been difficult to investigate historically because of lack of data. Amphibians provide a particularly good example because there is global concern about amphibian decline; yet most demographic parameter estimates are based on data from males, which we show can lead to erroneous conclusions. 3. &ensp;We use 10 years of capture–recapture data from boreal toads ( Bufo boreas ) and the multi-state open robust design model to provide evidence for the occurrence of skipped breeding opportunities (i.e. temporary emigration) in females. This is the first time that the open robust design model has been applied to an analysis of an amphibian population that we are aware of. 4. &ensp;We determined that the transition from breeder to non-breeder is obligate and the probability of a non-breeder remaining a non-breeder is 64%; thus, temporary emigration is first-order Markovian in nature, where breeding probability is dependent on the previous year’s activity, i.e. if a female did not breed in year one, there is a 36% chance that she will breed in year two. With temporary emigration accounted for, we estimated between-year female survival at 87%. 5. &ensp;Establishing the occurrence of temporary emigration not only reduces bias in estimates of survival probabilities but also provides information about expected breeding attempts by females, a critical element in understanding the ecology of an organism and the impacts of outside stressors and conservation actions.

Methods in Ecology and Evolution↗

USGS2023

Conservation genomics of an endangered montane amphibian reveals low population structure, low genomic diversity and selection pressure from disease

Wildlife diseases are a major global threat to biodiversity. Boreal toads ( Anaxyrus [Bufo] boreas ) are a state-endangered species in the southern Rocky Mountains of Colorado and New Mexico, and a species of concern in Wyoming, largely due to lethal skin infections caused by the amphibian chytrid fungus Batrachochytrium dendrobatidis ( Bd ). We performed conservation and landscape genomic analyses using single nucleotide polymorphisms from double-digest, restriction site-associated DNA sequencing in combination with the development of the first boreal toad (and first North American toad) reference genome to investigate population structure, genomic diversity, landscape connectivity and adaptive divergence. Genomic diversity ( π = 0.00034–0.00040) and effective population sizes ( N e = 8.9–38.4) were low, likely due to post-Pleistocene founder effects and Bd -related population crashes over the last three decades. Population structure was also low, likely due to formerly high connectivity among a higher density of geographically proximate populations. Boreal toad gene flow was facilitated by low precipitation, cold minimum temperatures, less tree canopy, low heat load and less urbanization. We found >8X more putatively adaptive loci related to Bd intensity than to all other environmental factors combined, and evidence for genes under selection related to immune response, heart development and regulation and skin function. These data suggest boreal toads in habitats with Bd have experienced stronger selection pressure from disease than from other, broad-scale environmental variations. These findings can be used by managers to conserve and recover the species through actions including reintroduction and supplementation of populations that have declined due to Bd .

Colorado↗

USGS2019

Species-specific responses to wetland mitigation among amphibians in the Greater Yellowstone Ecosystem

Habitat loss and degradation are leading causes of biodiversity declines, therefore assessing the capacity of created mitigation wetlands to replace habitat for wildlife has become a management priority. We used single season occupancy models to compare the occurrence of larvae of four species of pond‐breeding amphibians in wetlands created for mitigation, wetlands impacted by road construction, and unimpacted reference wetlands along a highway corridor in the Greater Yellowstone Ecosystem, United States. Created wetlands were shallow and had less aquatic vegetation and surface area than impacted and reference wetlands. Occupancy of barred tiger salamander ( Ambystoma mavortium ) and boreal chorus frog ( Pseudacris maculata ) larvae was similar across wetland types, whereas boreal toads ( Anaxyrus boreas ) occurred more often in created wetlands than reference and impacted wetlands. However, the majority of created wetlands (>80%) dried partially or completely before amphibian metamorphosis occurred in both years of our study, resulting in heavy mortality of larvae and, we suspect, little to no recruitment. Columbia spotted frogs ( Rana luteiventris ), which require emergent vegetation that is not common in newly created wetlands, occurred commonly in impacted and reference wetlands but were found in only one created wetland. Our results show that shallow created wetlands with little aquatic vegetation may be attractive breeding areas for some amphibians, but may result in high mortality and little recruitment if they fail to hold water for the entire larval period.

Yellowstone↗

USGS2003

Home range and movements of boreal toads in undisturbed habitat

I sampled movements and amount of area used by boreal toads (Bufo boreas) between June and October for 3 yr. Females were found farther from the breeding site than were males, and mean home ranges, as calculated by the adaptive kernel method, were four times larger for females than for males. Temperature and snow accumulation were comparable over the study, but data collection was hampered by mortality of animals caused by an outbreak of amphibian chytridiomycosis in yr 2. These data provide insight into use of habitat by boreal toads in undisturbed areas but may not be typical of a completely healthy population.

Copeia↗

USGS2014

New host and distribution records of the leech Placobdella sophieae Oceguera-Figueroa et al., 2010 (Hirudinida: Glossiphoniidae)

Placobdella sophieae Oceguera-Figueroa et al., 2010 (Hirudinida: Glossiphoniidae) is reported from Oregon, California, and British Columbia for the first time. New hosts reported for P. sophieae include Taricha granulosa (rough-skinned newt), Rana pretiosa (Oregon spotted frog), and Anaxyrus boreas (western toad). Placobdella sophieae exhibits relatively low host specificity and all amphibians occurring in the Pacific Northwest are potential hosts.

Comparative Parasitology↗

USGS2020

Effects of snowpack, temperature, and disease on the demography of a wild population of amphibians

Understanding the demographic consequences of interactions among pathogens, hosts, and weather conditions is critical in determining how amphibian populations respond to disease and in identifying site-specific conservation actions that can be developed to bolster persistence of amphibian populations. We investigated population dynamics in Boreal Toads ( Anaxyrus boreas ) relative to abiotic (fall temperatures and snowpack) and biotic (the abundance of another anuran host and disease) characteristics of the local environment in Wyoming, USA. We used capture–recapture data and a multistate model where state was treated as a hidden Markov process to incorporate disease state uncertainty and assess our a priori hypotheses. Our results indicated that snowpack during the coldest week of winter is more influential to toad survival, disease transition probabilities, and the population-level prevalence of the amphibian chytrid fungus ( Batrachochytrium dendrobatidis ) in the spring, than temperatures in the fall or the presence of another host. As hypothesized, apparent survival at low (i.e., <25 cm) snowpack (0.22; confidence interval [CI] = 0.15–0.31) was lower than apparent survival at high snowpack (90.65; CI = 0.50–0.78). Our findings highlight the potential for local environmental factors, like snowpack, to influence disease and host persistence, and demonstrate the ecological complexity of disease effects on population demography in natural environments. This work further emphasizes the need for improved understanding of how climate change may influence the relationships among pathogens, hosts, and their environment for wild animal populations challenged by disease.

Wyoming↗

USGS2008

Effects of weather on survival in populations of boreal toads in Colorado

Understanding the relationships between animal population demography and the abiotic and biotic elements of the environments in which they live is a central objective in population ecology. For example, correlations between weather variables and the probability of survival in populations of temperate zone amphibians may be broadly applicable to several species if such correlations can be validated for multiple situations. This study focuses on the probability of survival and evaluates hypotheses based on six weather variables in three populations of Boreal Toads (Bufo boreas) from central Colorado over eight years. In addition to suggesting a relationship between some weather variables and survival probability in Boreal Toad populations, this study uses robust methods and highlights the need for demographic estimates that are precise and have minimal bias. Capture-recapture methods were used to collect the data, and the Cormack-Jolly-Seber model in program MARK was used for analysis. The top models included minimum daily winter air temperature, and the sum of the model weights for these models was 0.956. Weaker support was found for the importance of snow depth and the amount of environmental moisture in winter in modeling survival probability. Minimum daily winter air temperature was positively correlated with the probability of survival in Boreal Toads at other sites in Colorado and has been identified as an important covariate in studies in other parts of the world. If air temperatures are an important component of survival for Boreal Toads or other amphibians, changes in climate may have profound impacts on populations. Copyright 2008 Society for the Study of Amphibians and Reptiles.

Journal of Herpetology↗

USGS2010

Reptile and amphibian responses to large-scale wildfires in southern California

In 2003, southern California experienced several large fires that burned thousands of hectares of wildlife habitats and conserved lands. To investigate the effects of these fires on the reptile and amphibian communities, we compared the results from prefire herpetofauna and vegetation sampling to two years of postfire sampling across 38 burned and 17 unburned plots. The sampling plots were spread over four vegetation types and four open space areas within San Diego County. Our capture results indicated that burned chaparral and coastal sage scrub plots lost herpetofaunal species diversity after the fires and displayed a significant shift in overall community structure. Shrub and tree cover at the burned plots, averaged across the second and third postfire years, had decreased by 53 in chaparral and 75 in coastal sage scrub. Additionally, postfire herpetofauna community structure at burned plots was more similar to that found in unburned grasslands. In grassland and woodland/riparian vegetation plots, where shrub and tree cover was not significantly affected by fires, we found no differences in the herpetofaunal species diversity or community composition. At the individual species level, Sceloporus occidentalis was the most abundant reptile in these areas both before and after the fires. We saw increases in the net capture rates for several lizard species, including Aspidoscelis tigris, Phrynosoma coronatum, and Uta stansburiana in burned chaparral plots and Aspidoscelis hyperythra and U. stansburiana in burned coastal sage scrub plots. The toad, Bufo boreas, was detected at significantly fewer burned plots in chaparral after the fires. Additionally, we documented decreases in the number of plots occupied by lizards (Elgaria multicarinata), salamanders (Batrachoseps major), and snakes (Coluber constrictor, Lampropeltis getula, Pituophis catenifer, and Masticophis lateralis) in coastal sage scrub and chaparral after the fires. We discuss the individual species results as they relate to such life-history traits as the susceptibility to initial mortality, the response to the altered postfire habitat, and shifts in the availability of potential prey. We foresee that a continued unnatural fire regime will result in a simplification of the southern California reptile and amphibian communities. ?? 2010 Society for the Study of Amphibians and Reptiles.

Journal of Herpetology↗

USGS2006

Estimation of temporary emigration in male toads

Male boreal toads (Bufo boreas) are thought to return to the breeding site every year but, if absent in a particular year, will be more likely to return the following year. Using Pollock's robust design we estimated temporary emigration (the probability a male toad is absent from a breeding site in a given year) at three locations in Colorado, USA: two in Rocky Mountain National Park and one in Chaffee County. We present data that suggest that not all male toads return to the breeding site every year. Our analyses indicate that temporary emigration varies by site and time (for example, from 1992 to 1998, the probability of temporary emigration ranged from 10% to 29% and from 3% to 95% at Lost Lake and Kettle Tarn, respectively). Although the results provide weak evidence that males are more likely to return after a year's hiatus, a general pattern of state-dependent temporary emigration was not supported. We also hypothesized relationships between temporary emigration and a number of weather variables. While some competitive models included weather covariates, imprecise and variable estimates of the effects of these covariates precluded fully defining their impact on temporary emigration. ?? 2006 by the Ecological Society of America.

Colorado↗

USGS2005

An evaluation of weather and disease as causes of decline in two populations of boreal toads

Two populations of boreal toads ( Bufo boreas ) experienced drastic declines in abundance in the late 1990s. Evidence supported the hypothesis of disease (the chytrid fungus, Batrachochytrium dendrobatidis ) as the cause of these declines, but other hypotheses had not been evaluated. We used an 11-year capture–recapture data set to evaluate weather and disease as causes of these declines. We developed sets of mathematical models that reflected hypothesized relationships between several weather variables and annual survival rates of adult males in these populations. In addition, models that reflected the possibility that the declines were caused by an introduced fungus were developed. All models were fit to the data and were evaluated using a model selection criterion (QAIC c ). Our analysis provided strong support for the hypothesis of an introduced fungus and little support for the hypothesis that weather conditions caused the declines. Our results also suggest a strong, negative “marking effect” on survival rates of boreal toads. Model-averaged estimates of survival rate are presented.

Ecological Applications↗

USGS2003

The effects of ultraviolet-B radiation on the toxicity of fire-fighting chemicals

The interactive effects of ultraviolet (UV) and fire-retardant chemicals were evaluated by exposing rainbow trout (Oncorhyncus mykiss) juveniles and tadpoles of southern leopard frogs (Rana sphenocephala) to six fire-retardant formulations with and without sodium ferrocyanide (yellow prussiate of soda [YPS]) and to YPS alone under three simulated UV light treatments. Yellow prussiate of soda is used as a corrosion inhibitor in some of the fire-retardant chemical formulations. The underwater UV intensities measured were about 2 to 10% of surface irradiance measured in various aquatic habitats and were within tolerance limits for the species tested. Mortality of trout and tadpoles exposed to Fire-Trol?? GTS-R, Fire-Trol 300-F, Fire-Trol LCA-R, and Fire-Trol LCA-F was significantly increased in the presence of UV radiation when YPS was present in the formulation. The boreal toad (Bufo boreas), listed as endangered by the state of Colorado (USA), and southern leopard frog were similar in their sensitivity to these chemicals. Photoenhancement of fire-retardant chemicals can occur in a range of aquatic habitats and may be of concern even when optical clarity of water is low; however, other habitat characteristics can also reduce fire retardant toxicity.

Environmental Toxicology and Chemistry↗

USGS1992

Descriptive risk assessment of the effects of acidic deposition on Rocky Mountain amphibians

We evaluated the risk of habitat acidification to the six species of amphibians that occur in the mountains of Colorado and Wyoming. Our evaluation included extrinsic environmental factors (habitat sensitivity and amount of acidic atmospheric deposition) and species-specific intrinsic factors (sensitivity to acid conditions, habitat preferences, and timing of breeding). Only one of 57 surveyed localities had both acid neutralizing capacity <200 μ eq/L and sulfate deposition >10 kg/ha/yr, extrinsic conditions with a possible risk of acidification. Amphibian breeding habitats in the Rocky Mountains do not appear to be sufficiently acidic to kill amphibian embryos. Some species breed in high-elevation vernal pools during snowmelt, and an acidic pulse during snowmelt may pose a risk to embryos of these species. However, the acidic pulse, if present, probably occurs before open water appears and before breeding begins. Although inherent variability of amphibian population size may make detection of declines from anthropogenic effects difficult, acidic deposition is unlikely to have caused the observed declines of Bufo boreas and Rana pipiens in Colorado and Wyoming. Amphibians in the Rocky Mountains are not likely to be at risk with acidification inputs at present levels.

Journal of Herpetology↗

USGS2015

The source, discharge, and chemical characteristics of selected springs, and the abundance and health of associated endemic anuran species in the Mojave network parks

Hydrological and biological investigations were done during 2005 and 2006 in cooperation with the U.S. National Park Service to investigate the source, discharge, and chemical characteristics of selected springs and the abundance and health of endemic anuran (frog and toad) species at Darwin Falls in Death Valley National Park, Piute Spring in Mojave National Preserve, and Fortynine Palms Oasis in Joshua Tree National Park. Discharge from the springs at these sites sustains isolated riparian habitats in the normally dry Mojave Desert. Data were collected on water quantity (discharge) and quality, air and water temperature, and abundance and health of endemic anuran species. In addition, a single survey of the abundance and health of endemic anuran species was completed at Rattlesnake Canyon in Joshua Tree National Park. Results from this study were compared to limited historical data, where they exist, and can provide a baseline for future hydrological and biological investigations to evaluate the health and sustainability of the resource and its response to changing climate and increasing human use. Radiocarbon dating of the water yielded estimated ages of about 7,000 years at Piute Spring and about 3,000 years at Darwin Spring, and tritium-helium-3 dating indicated an age of less than 2 years at Fortynine Palms Oasis. Stable hydrogen-isotope ratios were used to interpret an average altitude of recharge of 2,348 meters for Darwin Spring (about 1,415 meters higher than the altitude of Darwin Spring), 1,668 meters for Piute Spring (about 766 meters higher than the altitude of Piute Spring), and 1,400 meters for the Upper Pool at Fortynine Palms Oasis (about 543 meters higher than the altitude of the Upper Pool). Water-quality data collected for this study did not appear to be sensitive to trends in precipitation or seasonality in the Darwin Falls and Piute Spring study areas; however, it was sensitive to trends in Fortynine Palms Oasis where salinity increased by more than 10 percent during the 2 years of this study. Such a rapid response is consistent with the comparatively short travel time of less than 2 years from recharge to discharge at Fortynine Palms Oasis. Of the 14 trace elements analyzed, only concentrations of uranium at Fortynine Palms Oasis and arsenic at Darwin Spring were above drinking water standards; both constituents are derived from natural sources in the drainage basin and, therefore, are likely to have accumulated as a result of natural processes. Endemic anuran species were surveyed at Darwin Falls for the western toad ( Anaxyrus boreas ) and the red-spotted toad ( Anaxyrus punctatus ), at Piute Spring for the red-spotted toad, and at Fortynine Palms Oasis for the red-spotted toad and California treefrog ( Pseudacris cadaverina ). Historically, red-spotted toads were at the edge of their range at Darwin Falls, but they were not detected during this study and have not been detected since the early 1980s. The 2006 western toad population at Darwin Falls was estimated at 381 adults (95-percent confidence interval [CI] of 314–482). The population of red-spotted toads at Piute Spring was estimated at 1,153 adults (95-percent CI of 935–1,503). However, an elevated rate of abnormalities (approximately 5 percent) was recorded in red-spotted toads as well as the presence of the chytrid fungus, Bactrochochytrium dendrobatidis , at Piute Spring. In Joshua Tree National Park, the California treefrog now occupies only three of the seven historically occupied drainages. Populations of California treefrogs at Fortynine Palms Oasis have declined more than 50 percent from 288 in 1969–71 to 109 in 2006. A similar decline was observed in the populations of red-spotted toads at Fortynine Palms Oasis from 300 adults in 1969–71 to 155 adults (95-percent CI of 90–139) in 2006. The red-spotted toads at Fortynine Palms Oasis also exhibited the presence of Bactrochochytrium dendrobatidis .

California↗

USGS2020

Amphibian chytrid prevalence on boreal toads in SE Alaska and NW British Columbia: Tests of habitat, life stages, and temporal trends

Tracking and understanding variation in pathogens such as Batrachochytrium dendrobatidis ([Bd]), which causes amphibian chytridiomycosis and has caused population declines globally, is a priority for many land managers. However, there has been relatively little sampling of amphibian communities at high latitudes. We used skin swabs collected during 2005–2017 from boreal toads (Anaxyrus boreas; N = 248), in southeast Alaska (USA; primarily in Klondike Gold Rush National Historical Park [KLGO]) and northwest British Columbia (Canada) to determine how Bd prevalence varied across life stages, habitat characteristics, local species richness, and time. Across all years, Bd prevalence peaked in June and was >3 times greater for adult toads (37.5%) vs. juveniles and metamorphs (11.2%). Bd prevalence for toads in the KLGO area, where other amphibian species are rare or absent, was highest from river habitats (55.0%), followed by human-modified upland wetlands (32.3%) and natural upland wetlands (12.7%) — the same rank-order these habitats are used for toad breeding. No Columbia spotted frogs (N = 12) or wood frogs (N = 2) from the study area tested Bd-positive, although all were from an area of low host density where Bd has not been detected. Prevalence of Bd on toads in the KLGO area decreased during 2005–2015. This trend from a largely single-species system may be encouraging or concerning, depending on how Bd is affecting vital rates, and emphasizes the need to understand effects of pathogens before translating disease prevalence into management actions.

Southeastern Alaska, Northwestern British Columbia↗

USGS2025

Myiasis infection by the toad fly (Lucilia bufonivora; Calliphoidae) in amphibians in Montana, USA

Toad flies in the genus Lucilia (previously referred to as Bufolucilia spp.) parasitize and cause myiasis in several amphibian species in North America. From 2019 to 2022, we documented Lucilia bufonivora infections in post-metamorphic western toads (Anaxyrus boreas ) during amphibian surveys in four wetlands in Glacier National Park, Montana, US. We found nine infected adult toads in 2019, seven infected adults in 2020, one infected juvenile in 2021, and five infected adults plus one infected juvenile in 2022. We also captured Columbia spotted frogs ( Rana luteiventris ) during these same surveys but detected no infections. Only one of the four wetlands had infected toads in 2019, despite their proximity and hydrologic connectivity, but two of these wetlands had infections in 2020, and a third had a single infection in 2021. The same three of four wetlands had infections in 2022. In 2008, a similar parasitic infection in one western toad had been noted at the same wetland as in 2019. That toad had been captured again two years later without signs of infection.

Montana↗