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At least 91 records · Page 5Linked to original sources
USGS1979

A bibliography of references to avian cholera

Mrs. Wilson has made a genuine effort to include in this bibliography every significant reference to avian cholera since Louis Pasteur's articles appeared in 1880, although she recognizes the likelihood that a few have been overlooked. New listings have been added throughout 1978, but comprehensive coverage of the literature cannot be claimed beyond June of that year. Textbook accounts, because they are generally summaries of work published elsewhere, are excluded. Papers dealing primarily with the biology of Pasteurella multocida , as opposed to the disease it induces in birds, are also excluded, unless they report information of diagnostic usefulness. Short abstracts are not included unless the journals in which they are published are more widely available than those in which the complete articles appear or they are English summaries of foreign language articles. In compiling this bibliography, Mrs. Wilson has made extensive use of Biological Abstracts, the Pesticide Documentation Bulletin, and printouts generated by Bibliographic Retrieval Services, Inc. The "Literature Cited" sections of textbooks and journal articles pertinent to the subject were sources of many additional references. Regardless of the origin of the citation, its accuracy was confirmed by comparison with the original publication, except in those few instances (marked with an asterisk) when the journal was not on the shelves of the libraries accessible to us. The author will be grateful to users of the bibliography who point out errors or omissions. Wayne I. Jensen Microbiologist In Charge

Special Scientific Report - Wildlife↗
USGS2017

Camera system considerations for geomorphic applications of SfM photogrammetry

The availability of high-resolution, multi-temporal, remotely sensed topographic data is revolutionizing geomorphic analysis. Three-dimensional topographic point measurements acquired from structure-from-motion (SfM) photogrammetry have been shown to be highly accurate and cost-effective compared to laser-based alternatives in some environments. Use of consumer-grade digital cameras to generate terrain models and derivatives is becoming prevalent within the geomorphic community despite the details of these instruments being largely overlooked in current SfM literature. This article is protected by copyright. All rights reserved. A practical discussion of camera system selection, configuration, and image acquisition is presented. The hypothesis that optimizing source imagery can increase digital terrain model (DTM) accuracy is tested by evaluating accuracies of four SfM datasets conducted over multiple years of a gravel bed river floodplain using independent ground check points with the purpose of comparing morphological sediment budgets computed from SfM- and lidar-derived DTMs. Case study results are compared to existing SfM validation studies in an attempt to deconstruct the principle components of an SfM error budget. This article is protected by copyright. All rights reserved. Greater information capacity of source imagery was found to increase pixel matching quality, which produced 8 times greater point density and 6 times greater accuracy. When propagated through volumetric change analysis, individual DTM accuracy (6–37 cm) was sufficient to detect moderate geomorphic change (order 100,000 m 3 ) on an unvegetated fluvial surface; change detection determined from repeat lidar and SfM surveys differed by about 10%. Simple camera selection criteria increased accuracy by 64%; configuration settings or image post-processing techniques increased point density by 5–25% and decreased processing time by 10–30%. This article is protected by copyright. All rights reserved. Regression analysis of 67 reviewed datasets revealed that the best explanatory variable to predict accuracy of SfM data is photographic scale. Despite the prevalent use of object distance ratios to describe scale, nominal ground sample distance is shown to be a superior metric, explaining 68% of the variability in mean absolute vertical error.

Earth Surface Processes and Landforms↗
USGS2023

Assessing contaminants of emerging concern in the Great Lakes Ecosystem: A decade of method development and practical application

Assessing the ecological risk of contaminants in the field typically involves consideration of a complex mixture of compounds which may or may not be detected via instrumental analyses. Further, there are insufficient data to predict the potential biological effects of many detected compounds, leading to their being characterized as contaminants of emerging concern (CECs). Over the past several years, advances in chemistry, toxicology, and bioinformatics have resulted in a variety of concepts and tools that can enhance the pragmatic assessment of the ecological risk of CECs. The present Focus article describes a 10+- year multiagency effort supported through the U.S. Great Lakes Restoration Initiative to assess the occurrence and implications of CECs in the North American Great Lakes. State-of-the-science methods and models were used to evaluate more than 700 sites in about approximately 200 tributaries across lakes Ontario, Erie, Huron, Michigan, and Superior, sometimes on multiple occasions. Studies featured measurement of up to 500 different target analytes in different environmental matrices, coupled with evaluation of biological effects in resident species, animals from in situ and laboratory exposures, and in vitro systems. Experimental taxa included birds, fish, and a variety of invertebrates, and measured endpoints ranged from molecular to apical responses. Data were integrated and evaluated using a diversity of curated knowledgebases and models with the goal of producing actionable insights for risk assessors and managers charged with evaluating and mitigating the effects of CECs in the Great Lakes. This overview is based on research and data captured in approximately about 90 peer-reviewed journal articles and reports, including approximately about 30 appearing in a virtual issue comprised of highlighted papers published in Environmental Toxicology and Chemistry or Integrated Environmental Assessment and Management . Environ Toxicol Chem 2023;42:2506–2518. © 2023 SETAC. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.

Environmental Toxicology and Chemistry↗
USGS2001

Assessment of selenium effects in lotic ecosystems

The selenium literature has grown substantially in recent years to encompass new information in a variety of areas. Correspondingly, several different approaches to establishing a new water quality criterion for selenium have been proposed since establishment of the national water quality criterion in 1987. Diverging viewpoints and interpretations of the selenium literature have lead to opposing perspectives on issues such as establishing a national criterion based on a sediment-based model, using hydrologic units to set criteria for stream reaches, and applying lentic-derived effects to lotic environments. This Commentary presents information on the lotic verse lentic controversy. Recently, an article was published that concluded that no adverse effects were occurring in a cutthroat trout population in a coldwater river with elevated selenium concentrations (C. J. Kennedy, L. E. McDonald, R. Loveridge, and M. M. Strosher, 2000, Arch. Environ. Contam. Toxicol. 39, 46–52). This article has added to the controversy rather than provided further insight into selenium toxicology. Information, or rather missing information, in the article has been critically reviewed and problems in the interpretations are discussed.

Ecotoxicology and Environmental Safety↗
USGS1995

Annotated bibliography of methodology for assessment of undiscovered oil and gas resources

An annotated bibliography of methodology of assessment of undiscovered oil and gas resources is presented as a useful reference for those engaged in resource assessment. The articles that are included deal only with quantitative assessment of undiscovered or inferred resources. the articles in this bibliography are classified largely according to the major assessment method that was applied in each situation. Major assessment methods include areal and volumetric yield methods, field size distributions, historical extrapolation, deposit modeling, organic geochemical mass balance methods, and direct expert assessment. Other categories include mathematical tools, reserve growth/confirmation, quantitative characterization of undiscovered resources, and general topics. For the purpose of future updates, we solicit contributions of articles that may have been missed in the preparation of this bibliography. ?? 1995 Oxford University Press.

Nonrenewable Resources↗
USGS2003

Hydrogeology Journal in 2002

Hydrogeology Journal appeared in six issues containing a total of 674 pages and 47 major articles, including 22 Papers and 24 Reports, as well as Technical Notes and Book Reviews. The final issue of 2002 also contained the annual volume index. Hydrogeology Journal (HJ) is an international forum for hydrogeology and related disciplines. Authors in 2002 were from about 30 countries. Articles advanced hydrogeologic science and described hydrogeologic systems in many regions worldwide. These articles focused on 22 countries: Afghanistan, Argentina, Australia, Austria, Belgium, Brazil, Canada, China, India, Israel, Japan, Jordan, Mexico, New Zealand, Nigeria, Portugal, Qatar, Switzerland, Syria, Turkey, UK, and the USA. The Guest Editors of the 2002 HJ theme issue on "Groundwater Recharge", Bridget R. Scanlon and Peter G. Cook, assembled a highly relevant and sought-after collection of papers from eminent authors on wide-ranging aspects of the subject.

Hydrogeology Journal↗
USGS2004

Editors' message: Hydrogeology Journal in 2003

Hydrogeology Journal appeared in six issues containing a total of 710 pages and 48 major articles, including 31 Papers and 14 Reports, as well as some Technical Notes and Book Reviews. The number of submitted manuscripts continues to increase. The final issue of 2003 also contained the annual volume index. Hydrogeology Journal ( HJ ) is an international forum for hydrogeology and related disciplines and authors in 2003 were from about 28 countries. Articles advanced hydrogeologic science and described hydrogeologic systems in many regions worldwide. These articles focused on a variety of general topics and on studies of hydrogeology in 24 countries: Afghanistan, Algeria, Argentina, Australia, Bangladesh, Belgium, Canada, Chile, China, Denmark, France, India, Italy, Mexico, Netherlands, New Zealand, Nigeria, Norway, Portugal, Russia, South Africa, Switzerland, Turkey, and U.S.A. The Guest Editor of the 2003 HJ theme issue on “Hydromechanics in Geology and Geotechnics”, Ove Stephansson, assembled a valuable collection of technical reviews and research papers from eminent authors on important aspects of the subject area.

Hydrogeology Journal↗
USGS2013

To the editor: Reply confuses newsprint with media

“Is Science in Danger of Sanctifying the Wolf” (Mech, 2012), contends that some scientists have claimed that wolf (Canis lupus) restoration has led to many ecological benefits lower in the food chain but that other scientists have questioned the evidence for those claims. Furthermore, my article claims that “the media become complicit [in promoting positive studies about wolves] by immediately publicizing such studies (Table 1)….” Dr. Bruskotter’s letter (Bruskotter, 2012) contends that Houston et al. (2010) refute that statement. However, Houston et al. (2010) covered only newsprint, including many local newspapers dating back to 1999 before most of the scientific articles I mentioned were published. My article said nothing about newsprint or news media. It stated “media” which of course includes radio, TV, blogs, websites, magazines, social media, etc. These types of media reach a wider and often different audience than newsprint. The Houston et al. (2010)analysis included none of these latter types of media so does not refute my statements.

Biological Conservation↗
USGS2003

Review of residue-based selenium toxicity thresholds for freshwater fish

A variety of guidelines have been proposed in recent years for linking selenium concentrations in the whole body of fish or in diet with adverse effects in fish. Diverging viewpoints seem to be forming separating groups supporting either the low-selenium guidelines proposed by the government and academic researchers or the high-selenium guidelines proposed by other researchers. Recently, an article was published that reviewed selected studies and recommended guidelines for selenium concentrations in the whole body of fish and in diet that were higher than those proposed by other researchers (≈4 μg/g in whole body and 3–4 μg/g in diet). That article also recommended separating guidelines for coldwater fish (6 μg/g in whole body and 11 μg/g in diet) and warmwater fish (9 μg/g in whole body and 10 μg/g in diet). The approaches, information, and guidelines presented in the article are reviewed and problems in their interpretation and conclusions are discussed. The majority of the selenium literature supports a whole-body threshold of 4 μg/g in fish and 3 μg/g in diet.

Ecotoxicology and Environmental Safety↗
USGS2003

Ancient maize from Chacoan great houses: Where was it grown?

In this article, we compare chemical ( 87 Sr/ 86 Sr and elemental) analyses of archaeological maize from dated contexts within Pueblo Bonito, Chaco Canyon, New Mexico, to potential agricultural sites on the periphery of the San Juan Basin. The oldest maize analyzed from Pueblo Bonito probably was grown in an area located 80 km to the west at the base of the Chuska Mountains. The youngest maize came from the San Juan or Animas river floodplains 90 km to the north. This article demonstrates that maize, a dietary staple of southwestern Native Americans, was transported over considerable distances in pre-Columbian times, a finding fundamental to understanding the organization of pre-Columbian southwestern societies. In addition, this article provides support for the hypothesis that major construction events in Chaco Canyon were made possible because maize was brought in to support extra-local labor forces.

Proceedings of the National Academy of Sciences of↗
USGS2013

Taming wildlife disease: bridging the gap between science and management

1.Parasites and pathogens of wildlife can threaten biodiversity, infect humans and domestic animals, and cause significant economic losses, providing incentives to manage wildlife diseases. Recent insights from disease ecology have helped transform our understanding of infectious disease dynamics and yielded new strategies to better manage wildlife diseases. Simultaneously, wildlife disease management (WDM) presents opportunities for large-scale empirical tests of disease ecology theory in diverse natural systems. 2.To assess whether the potential complementarity between WDM and disease ecology theory has been realized, we evaluate the extent to which specific concepts in disease ecology theory have been explicitly applied in peer-reviewed WDM literature. 3.While only half of WDM articles published in the past decade incorporated disease ecology theory, theory has been incorporated with increasing frequency over the past 40 years. Contrary to expectations, articles authored by academics were no more likely to apply disease ecology theory, but articles that explain unsuccessful management often do so in terms of theory. 4.Some theoretical concepts such as density-dependent transmission have been commonly applied, whereas emerging concepts such as pathogen evolutionary responses to management, biodiversity–disease relationships and within-host parasite interactions have not yet been fully integrated as management considerations. 5.Synthesis and applications. Theory-based disease management can meet the needs of both academics and managers by testing disease ecology theory and improving disease interventions. Theoretical concepts that have received limited attention to date in wildlife disease management could provide a basis for improving management and advancing disease ecology in the future.

Journal of Applied Ecology↗
USGS2022

Toward scoping reviews of individual bird species

Scoping reviews, in which the literature on a given topic is systematically collated and summarized, aid literature searches and highlight knowledge gaps on a given topic, thus hastening scientific progress and informing conservation efforts. Because much research and conservation is targeted at the species level, ornithology and bird conservation would benefit from scoping reviews of individual species. We present and apply a framework for scoping reviews for three disparate raptor species: California Condor Gymnogyps californianus , Harpy Eagle Harpia harpyja and Gyrfalcon Falco rusticolus . We consulted expert panels to develop appropriate search strings and lists of essential literature, i.e. ‘benchmark articles’. We searched Web of Science, Scopus and Google Scholar. Searches for California Condor, Harpy Eagle and Gyrfalcon returned 268, 138 and 343 articles, respectively, that discuss, review or collect empirical data for the focal species. Our searches returned all benchmark articles identified by species experts, indicating that the searches captured the most important work on each species. We coded each study according to the topic addressed, country and month in which data were collected. We also coded threats, stresses and conservation actions addressed by studies, following definitions used by the International Union for the Conservation of Nature (IUCN) during Red List assessments. Literature summaries for each species include the number of studies addressing certain topics, monthly timing of research and global maps of research focus. Our coding scheme revealed important knowledge gaps for each species. Effects of conservation actions on wild individuals were less studied for California Condors. Harpy Eagles were less studied outside of Brazil and Panama, and Gyrfalcons were less studied outside of their breeding season. Scoping reviews of the world's bird species would help to identify critical knowledge gaps, thereby aiding the global effort to assuage the sixth mass extinction.

Ibis↗
USGS2008

Restoration ecology and invasive riparian plants: An introduction to the special section on Tamarix spp. in western North America

River systems around the world are subject to various perturbations, including the colonization and spread of non-native species in riparian zones. Riparian resource managers are commonly engaged in efforts to control problematic non-native species and restore native habitats. In western North America, small Eurasian trees or shrubs in the genus Tamarix occupy hundreds of thousands of hectares of riparian lands, and are the targets of substantial and costly control efforts and associated restoration activities. Still, significant information gaps exist regarding approaches used in control and restoration efforts and their effects on riparian ecosystems. In this special section of papers, eight articles address various aspects of control and restoration associated with Tamarix spp. These include articles focused on planning restoration and revegetation; a synthetic analysis of past restoration efforts; and several specific research endeavors examining plant responses, water use, and various wildlife responses (including birds, butterflies, and lizards). These articles represent important additions to the Tamarix spp. literature and contain many lessons and insights that should be transferable to other analogous situations in river systems globally.

Restoration Ecology↗
USGS2015

A further note on the scientific name of Bullocks’ Oriole

Chesser (2013) intended to introduce a justified emendation to Icterus bullockii under Article 32.5.1 of the Code (ICZN 1999), because the name honors both William Bullock, Sr., and William Bullock, Jr. However, the correction bullockorum is "incorrect" and therefore is an unjustified emendation (Article 33.2.3). Under the assumption that the name Bullock was latinized (cf. Article 31.1.1) to Bullockius (bullocki– + the nominative case ending –us) and therefore that the name bullockii comprises the stem bullocki– + the genitive case ending –i, the justified correction bullockiorum is required.

Zootaxa↗
USGS2021

The 2018 update of the US National Seismic Hazard Model: Ground motion models in the western US

The U.S. Geological Survey (USGS) National Seismic Hazard Model (NSHM) is the scientific foundation of seismic design regulations in the United States and is regularly updated to consider the best available science and data. The 2018 update of the conterminous U.S. NSHM includes significant changes to the underlying ground motion models (GMMs), most of which are necessary to enable the new multi-period response spectra (MPRS) requirements of seismic design regulations that use hazard results for 22 spectral periods and eight site classes. This article focuses on the GMMs used in the western United States (WUS) and is a companion to a recent article on the GMMs used in the central and eastern United States (CEUS). In the WUS, for crustal and subduction earthquakes, two models used in previous versions of the NSHM are excluded to provide consistency over all considered periods and site classes. To more accurately estimate ground motions at long periods in the vicinity of Los Angeles, San Francisco, Salt Lake City, and Seattle, the 2018 NSHM incorporates deep sedimentary basin depth from local seismic velocity models. The subduction GMMs considered lack basin depth terms and are modified to include an additional scale factor to account for this. This article documents the WUS GMMs used in the 2018 NSHM update and provides detail on the changes to GMM medians, aleatory variability, epistemic uncertainty, and site-effect models. It compares each of these components with those considered in prior NSHMs and discusses their total effect on hazard.

Arizona, California, Idaho, Montana, New Mexico, N↗
USGS2024

Existing evidence on the effects of climate variability and climate change on ungulates in North America: A systematic map

Background Climate is an important driver of ungulate life-histories, population dynamics, and migratory behaviors. Climate conditions can directly impact ungulates via changes in the costs of thermoregulation and locomotion, or indirectly, via changes in habitat and forage availability, predation, and species interactions. Many studies have documented the effects of climate variability and climate change on North America’s ungulates, recording impacts to population demographics, physiology, foraging behavior, migratory patterns, and more. However, ungulate responses are not uniform and vary by species and geography. Here, we present a systematic map describing the abundance and distribution of evidence on the effects of climate variability and climate change on native ungulates in North America. Methods We searched for all evidence documenting or projecting how climate variability and climate change affect the 15 ungulate species native to the U.S., Canada, Mexico, and Greenland. We searched Web of Science, Scopus, and the websites of 62 wildlife management agencies to identify relevant academic and grey literature. We screened English-language documents for inclusion at both the title and abstract and full-text levels. Data from all articles that passed full-text review were extracted and coded in a database. We identified knowledge clusters and gaps related to the species, locations, climate variables, and outcome variables measured in the literature. Review findings We identified a total of 674 relevant articles published from 1947 until September 2020. Caribou ( Rangifer tarandus ), elk ( Cervus canadensis ), and white-tailed deer ( Odocoileus virginianus ) were the most frequently studied species. Geographically, more research has been conducted in the western U.S. and western Canada, though a notable concentration of research is also located in the Great Lakes region. Nearly 75% more articles examined the effects of precipitation on ungulates compared to temperature, with variables related to snow being the most commonly measured climate variables. Most studies examined the effects of climate on ungulate population demographics, habitat and forage, and physiology and condition, with far fewer examining the effects on disturbances, migratory behavior, and seasonal range and corridor habitat. Conclusions The effects of climate change, and its interactions with stressors such as land-use change, predation, and disease, is of increasing concern to wildlife managers. With its broad scope, this systematic map can help ungulate managers identify relevant climate impacts and prepare for future changes to the populations they manage. Decisions regarding population control measures, supplemental feeding, translocation, and the application of habitat treatments are just some of the management decisions that can be informed by an improved understanding of climate impacts. This systematic map also identified several gaps in the literature that would benefit from additional research, including climate effects on ungulate migratory patterns, on species that are relatively understudied yet known to be sensitive to changes in climate, such as pronghorn ( Antilocapra americana ) and mountain goats ( Oreamnos americanus ), and on ungulates in the eastern U.S. and Mexico.

Environmental Evidence↗
USGS2018

Advances in drainage: Selected works from the Tenth International Drainage Symposium

This article introduces a special collection of fourteen articles accepted from among the 140 technical presentations, posters, and meeting papers presented at the 10th International ASABE Drainage Symposium. The symposium continued in the tradition of previous symposia that began in 1965 as a forum for presenting and assessing the progress of drainage research and implementation throughout the world. The articles in this collection address a wide range of topics grouped into five broad categories: (1) crop response, (2) design and management, (3) hydrology and scale, (4) modeling, and (5) water quality. The collection provides valuable information for scientists, engineers, planners, and others working on crop production, water quality, and water quantity issues affected by agricultural drainage. The collection also provides perspectives on the challenges of increasing agricultural production in a changing climate, with ever-greater attention to water quality and quantity concerns that will require integrated technical, economic, and social solutions.

Transactions of the ASABE↗
USGS2021

Ten simple rules for productive lab meetings

The aim of this article is to delineate 10 simple rules on how to achieve productive lab meetings. We use the term “meeting” interchangeably to represent both the single meeting event and the overarching concept of the recurring meeting. In this article we speak from our experience, as a lab group at the University of Massachusetts that meets regularly ( Fig 1 ). Although the rules are mostly tailored toward academic or research institution settings, insights can be gained for other contexts. We believe these rules are applicable across a diverse set of labs and lab structures. For example, while many members of our current lab have remained constant for many years, the lab composition has changed as various undergraduate students, graduate students, postdoctoral fellow, visiting professors, and other faculty have joined and/or moved on. Throughout these experiences, lab rules, presented in modified form here, proved flexible and adaptable enough to be useful in helping guide productive lab meetings. Note that this article is written for principal investigator/s (PI), students, postdocs, and other lab members; it takes the whole lab group to succeed. The key to planning productive lab meetings boils down to discussing and determining as a team the answers to why, who, what, where, when, and how: Why are lab meetings important for the functioning of the lab? Who will participate? What will be the focus of lab meetings? When and where should the lab meetings occur? How should each meeting be structured and carried out so that the goals and objectives of the lab and its participants are met?

PLOS Computational Biology↗