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At least 883 records · Page 49Linked to original sources

Victims and vectors: highly pathogenic avian influenza H5N1 and the ecology of wild birds

The emergence of highly pathogenic avian influenza (HPAI) viruses has raised concerns about the role of wild birds in the spread and persistence of the disease. In 2005, an outbreak of the highly pathogenic subtype H5N1 killed more than 6,000 wild waterbirds at Qinghai Lake, China. Outbreaks have continued to periodically occur in wild birds at Qinghai Lake and elsewhere in Central China and Mongolia. This region has few poultry but is a major migration and breeding area for waterbirds in the Central Asian Flyway, although relatively little is known about migratory movements of different species and connectivity of their wetland habitats. The scientific debate has focused on the role of waterbirds in the epidemiology, maintenance and spread of HPAI H5N1: to what extent are they victims affected by the disease, or vectors that have a role in disease transmission? In this review, we summarise the current knowledge of wild bird involvement in the ecology of HPAI H5N1. Specifically, we present details on: (1) origin of HPAI H5N1; (2) waterbirds as LPAI reservoirs and evolution into HPAI; (3) the role of waterbirds in virus spread and persistence; (4) key biogeographic regions of outbreak; and (5) applying an ecological research perspective to studying AIVs in wild waterbirds and their ecosystems.

Avian Biology Research↗

Biological soil crusts are more prevalent in warmer and drier environments within the Great Basin ecoregion: Implications for managing annual grass invasion

Biological soil crusts (biocrusts) can thrive under environmental conditions that are stressful for vascular plants such as high temperatures and/or extremely low moisture availability. In these settings, and in the absence of disturbance, cover of biocrusts commonly exceeds cover of vascular plants. Arid landscapes are also typically slow to recover from disturbance and prone to altered vegetation and invasion by exotic species. In the sagebrush ecosystems, cover of annual, exotic, invasive grasses are lower where cover of biocrusts and vascular plants are greater, suggesting that biocrusts play a role in helping arid sites avoid conversion to dominance by invasive grasses. The conceptual framework for assessing ecological resistance and resilience (R&R) is used across the region to estimate the risk of invasion by annual grasses and the likelihood of recovery of native plants following disturbance. However, this framework does not currently account for biocrusts. We used data collected by the Bureau of Land Management Assessment, Inventory, and Monitoring program to relate biocrusts, specifically the presence of lichens and mosses, to the R&R framework. Lichens frequently occur on warm, dry sites, classified as lower R&R. Mosses frequently occur on sites classified as moderate or moderately low R&R. Without management practices that favor biocrusts in low-moderate R&R, these areas may be more vulnerable to transitioning from being dominated by shrubs to annual grasses. Under climate change scenarios, the area occupied by lower R&R sites is likely to increase, suggesting that the role of biocrusts in maintaining site resistance to invasion may also increase.

Arizona, California, Idaho, Nevada, Utah↗

Regional lists of plant species that occur in wetlands: data base user's guide

The Data Base List of Plant Species that Occur in Wetlands (LIST) currently contains records for 6,728 plant species. Each record provides information on nomenclature, plant characteristics and lifeforms, distribution, and frequency of occurrence in wetlands. The List of Plant Species that Occur in Wetlands, developed to supplement the U.S. Fish and Wildlife Service's Classification of Wetlands and Deepwater Habitats of the United States (Cowardin et al. 1979), underwent an intensive review by field botanists across the country. This review was coordinated by national and regional interagency wetland plant list review panels composed of representatives from the U. S. Fish and Wildlife Service, U. S. Army Corps of Engineers, Soil Conservation Service, and the Environmental Protection Agency. Initial and updated versions of the Data Base List of Plant Species that Occur in Wetlands are available in hardcopy (Reed 1986, 1988). Regional lists are available as U.S. Fish and Wildlife Service Biological Report Series 88(26.126.13). State lists are available as National Ecology Research Center Report Series 88(18.01-18.50). The computerized data base tracks and documents indicator assignments made by regional interagency review panels and facilitates generation of reports. This user's guide describes the format and contents of the LIST Data Base. The Data Base is available on 5-1/4" floppy disks in ASCII format for use with a data base management system on an IBM PC/XT/AT compatible computer. The LIST Data Base was developed using the QUICKTEXT Data Base Management System (Osborn and Strong 1984). Use of QUICKTEXT with the LIST Data Base is strongly recommended. Instructions for loading LIST into QUICKTEXT are included in this user's guide. Other data base management systems capable of handling variable length fields can be used by individuals familiar with these software packages. LIST distribution disks are available for 13 regions (Table 1). QUICKTEXT (course QT100--Data Base Management Techniques) and regional subsets of the LIST Data Base (distributed as self-tutorial courses, Table 1) are available through the Office of Conference Services, Colorado State University.

Report↗

Understanding predator-prey-competitor dynamics between Lower Missouri River Macrhybopsis and Scaphirhynchus using a population—bioenergetics model ensemble

The pallid sturgeon Scaphirhynchus albus is a long-lived, endangered fish in the Missouri River. Individuals become piscivorous as adults, so recruitment from stocking or reproduction could reduce populations of prey, including Macrhybopsis chubs. We constructed an individual- and age-based, multi-species, predator-prey-competitor model (IAMP) to represent the benthic community (sturgeons, chubs, and chironomids) of the Lower Missouri River (LMR) to explore scenarios of potential predator-prey-competitor dynamics. Our simulations suggest that chubs alone are unlikely able to support a level of LMR pallid sturgeon similar to historical or current populations. These simulations also suggest that adult pallid sturgeon may need to shift to non-chub prey fish to achieve the greater sizes observed in the Upper Missouri River. When annual hydrologic regimes were included, we found a negative relationship between chub relative abundance and previous year 30-day minimum flows. Inclusion of temporal environmental variability made it clear that large chub populations may be necessary to support LMR pallid sturgeon. When full stochasticity was included in the IAMP, chub population sizes needed to increase further to ensure continued reproduction and recruitment of both chubs and pallid sturgeon. These results support the hypothesis that the pallid sturgeon population in the Lower Missouri River may be food-limited. However, the full extent of this limitation and the management changes needed to address this will require more research on the biology and population dynamics of this fish community, on pallid sturgeon interactions with prey species, and on how sympatric species may be affected during the pallid sturgeon recovery process.

Colorado, Kansas, Minnesota, Missouri, Montana, Ne↗

Assessing macroinvertebrate biodiversity in freshwater ecosystems: Advances and challenges in dna-based approaches

Assessing the biodiversity of macroinvertebrate fauna in freshwater ecosystems is an essential component of both basic ecological inquiry and applied ecological assessments. Aspects of taxonomic diversity and composition in freshwater communities are widely used to quantify water quality and measure the efficacy of remediation and restoration efforts. The accuracy and precision of biodiversity assessments based on standard morphological identifications are often limited by taxonomic resolution and sample size. Morphologically based identifications are laborious and costly, significantly constraining the sample sizes that can be processed. We suggest that the development of an assay platform based on DNA signatures will increase the precision and ease of quantifying biodiversity in freshwater ecosystems. Advances in this area will be particularly relevant for benthic and planktonic invertebrates, which are often monitored by regulatory agencies. Adopting a genetic assessment platform will alleviate some of the current limitations to biodiversity assessment strategies. We discuss the benefits and challenges associated with DNA-based assessments and the methods that are currently available. As recent advances in microarray and next-generation sequencing technologies will facilitate a transition to DNA-based assessment approaches, future research efforts should focus on methods for data collection, assay platform development, establishing linkages between DNA signatures and well-resolved taxonomies, and bioinformatics. ?? 2010 by The University of Chicago Press.

The Quarterly Review of Biology↗

Considering multiecosystem trade-offs is critical when leveraging systematic conservation planning for restoration

Conservationists are increasingly leveraging systematic conservation planning (SCP) to inform restoration actions that enhance biodiversity. However, restoration frequently drives ecological transformations at local scales, potentially resulting in trade-offs among wildlife species and communities. The Conservation Interactions Principle (CIP), coined more than 15 years ago, cautions SCP practitioners regarding the importance of jointly and fully evaluating conservation outcomes across the landscape over long timeframes. However, SCP efforts that guide landscape restoration have inadequately addressed the CIP by failing to tabulate the full value of the current ecological state. The increased application of SCP to inform restoration, reliance on increasingly small areas to sustain at-risk species and ecological communities, ineffective considerations for the changing climate, and increasing numbers of at-risk species, are collectively intensifying the need to consider unintended consequences when prioritizing sites for restoration. Improper incorporation of the CIP in SCP may result in inefficient use of conservation resources through opportunity costs and/or conservation actions that counteract one another. We suggest SCP practitioners can avoid these consequences through a more detailed accounting of the current ecological benefits to better address the CIP when conducting restoration planning. Specifically, forming interdisciplinary teams with expertise in the current and desired ecosystem states at candidate conservation sites; improving data availability; modeling and computational advancements; and applying structured decision-making approaches can all improve the integration of the CIP in SCP efforts. Improved trade-off assessment, spanning multiple ecosystems or states, can facilitate efficient, proactive, and coordinated SCP applications across space and time. In doing so, SCP can effectively guide the siting of restoration actions capable of promoting the full suite of biodiversity in a region.

Global Change Biology↗

Refugial isolation and divergence in the Narrowheaded Gartersnake species complex (Thamnophis rufipunctatus) as revealed by multilocus DNA sequence data

Glacial–interglacial cycles of the Pleistocene are hypothesized as one of the foremost contributors to biological diversification. This is especially true for cold‐adapted montane species, where range shifts have had a pronounced effect on population‐level divergence. Gartersnakes of the Thamnophis rufipunctatus species complex are restricted to cold headwater streams in the highlands of the Sierra Madre Occidental and southwestern USA. We used coalescent and multilocus phylogenetic approaches to test whether genetic diversification of this montane‐restricted species complex is consistent with two prevailing models of range fluctuation for species affected by Pleistocene climate changes. Our concatenated nuDNA and multilocus species analyses recovered evidence for the persistence of multiple lineages that are restricted geographically, despite a mtDNA signature consistent with either more recent connectivity (and introgression) or recent expansion (and incomplete lineage sorting). Divergence times estimated using a relaxed molecular clock and fossil calibrations fall within the Late Pleistocene, and zero gene flow scenarios among current geographically isolated lineages could not be rejected. These results suggest that increased climate shifts in the Late Pleistocene have driven diversification and current range retraction patterns and that the differences between markers reflect the stochasticity of gene lineages (i.e. ancestral polymorphism) rather than gene flow and introgression. These results have important implications for the conservation of T. rufipunctatus (sensu novo), which is restricted to two drainage systems in the southwestern US and has undergone a recent and dramatic decline.

Molecular Ecology↗

Suwannee river basin and estuary integrated science workshop: September 22-24, 2004 Cedar Key, Florida

In response to the growing number of environmental concerns in the mostly pristine Suwannee River Basin and the Suwannee River Estuary system, the States of Florida and Georgia, the Federal government, and other local organizations have identified the Suwannee River as an ecosystem in need of protection because of its unique biota and important water resources. Organizations with vested interests in the region formed a coalition, the Suwannee Basin Interagency Alliance (SBIA), whose goals are to promote coordination in the identification, management, and scientific knowledge of the natural resources in the basin and estuary. To date, an integrated assessment of the physical, biological, and water resources has not been completed. A holistic, multi-disciplinary approach is being pursued to address the research needs in the basin and estuary and to provide supportive data for meeting management objectives of the entire ecosystem. The USGS is well situated to focus on the larger concerns of the basin and estuary by addressing specific research questions linking water supply and quality to ecosystem function and health across county and state boundaries. A strategic plan is being prepared in cooperation with Federal, State, and local agencies to identify and implement studies to address the most compelling research issues and management questions, and to conduct fundamental environmental monitoring studies. The USGS, Suwannee River Water Management District and the Florida Marine Research Institute are co-sponsoring this scientific workshop on the Suwannee River Basin and Estuary to: Discuss current and past research findings, Identify information gaps and research priorities, and Develop an action plan for coordinated and relevant research activities in the future. This workshop builds on the highly successful basin-wide conference sponsored by the Suwannee Basin Interagency Alliance that was held three years ago in Live Oak, Florida. This years workshop will focus on identifying information needs and priorities and developing partnerships. The USGS is seeking to define the role of the USGS Florida Integrated Science Center (FISC) in conducting integrated research in the Suwannee River Basin, and to establish a cooperative program with other agencies. Participants interested in river, floodplain, springs, estuary, or basin-wide issues are encouraged to attend. Topics for this years workshop include: Water quality and geochemistry: nutrient enrichment, reduction of nutrient loading to ground water, contaminants, and land use, Hydrogeology: interactions among ground water, surface water and ecosystem, modeling, and baseline mapping, Ecosystem dynamics: structure, process, species, and habitats (estuarine, riverine, floodplain, and wetland), and Information management: data sharing, database development, geographic information system (GIS), and basin-wide models.

Open-File Report↗

An empirically based simulation model to inform flow management for endangered species conservation

Increasing water demand, water development, and ongoing climate change have driven extensive changes to the hydrology, geomorphology and biology of arid-land rivers globally, driving an increasing need to understand how annual hydrologic conditions affect the distribution and abundance of imperiled desert fish populations. We analyzed the relationship between annual hydrologic conditions and the endangered Rio Grande silvery minnow ( Hybognathus amarus ) in the Middle Rio Grande, New Mexico, USA, using hurdle models to predict both presence and density as a function of integrated annual hydrologic metrics. Both presence and density were positively related to spring high flow magnitude and duration and negatively related to summer drying, as indicated by an integrated flow metric. Simulations suggest hydrologic conditions near the wettest observed in the data set would be required to meet recovery goals in a single year in all reaches. We demonstrate how the models developed herein can be used to examine alternative water management strategies, including strategies that may currently be socially and logistically infeasible to implement, to identify strategies minimizing trade-offs between conservation and other management goals.

New Mexico↗

Validation of stable isotope ratio analysis to document the biodegradation and natural attenuation of RDX, ESTCP Project ER-201208

Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a common soil contaminant at current and former military facilities, including many training and testing ranges. Because RDX is readily transported through soils to the subsurface, this nitramine explosive now also impacts groundwater and drinking water at numerous locations across the country. A significant issue with RDX contamination on ranges and at other military installations is that it often occurs over expansive areas, where in situ or ex situ treatment technologies are difficult to implement. One potential alternative for military ranges and other facilities is monitored natural attenuation (MNA), in which contaminant degradation by natural processes, including biodegradation, are evaluated. However, one limitation of this approach for RDX is the inability to accurately evaluate whether the nitramine is biodegrading under field conditions, as rates may be relatively slow. One potential technique to overcome this limitation is the use of compound-specific stable isotope analysis (CSIA), where biological contaminant destruction can be documented as changes in the ratio of stable isotopes of specific elements in a molecule; for RDX, ratios of 15 N/ 14 N and 13 C/ 12 C are relevant. The objective of this project is to validate a CSIA method to confirm and constrain rates of aerobic and anaerobic biodegradation of RDX at field sites. This technique can be utilized by DoD to provide critical data to support MNA as a remedy for treating this energetic in groundwater, and confirm the effectiveness of in situ enhanced bioremediation remedies. The stable isotopic composition of NO 3 - and NO 2 - was also measured when these anions co-occurred with RDX to evaluate whether these potential degradation products from RDX could be used to further demonstrate MNA in the field.

Report↗

Potomac tributary report: A summary of trends in tidal water quality and associated factors

The Potomac Tributary Report summarizes change over time in a suite of monitored tidal water quality parameters and associated potential drivers of those trends for the time period 1985 – 2018, and provides a brief description of the current state of knowledge explaining these observed changes. Water quality parameters described include surface total nitrogen (TN), surface total phosphorus (TP), spring and summer surface chlorophyll a, summer bottom dissolved oxygen (DO) concentrations, and Secchi disk depth (a measure of water clarity). Results for annual surface water temperature, bottom TP, bottom TN, surface ortho-phosphate (PO4), surface dissolved inorganic nitrogen (DIN), surface total suspended solids (TSS), and summer surface DO concentrations are provided in an Appendix. Drivers discussed include physiographic watershed characteristics, changes in N, P, and sediment loads from the watershed to tidal waters, expected effects of changing land use, and implementation of nutrient management and natural resource conservation practices. Factors internal to estuarine waters that also play a role as drivers are described including biogeochemical processes, physical forces such as wind-driven mixing of the water column, and biological factors such as phytoplankton biomass and the presence of submersed aquatic vegetation. Total nutrient concentrations have been decreasing at most stations in the Potomac River over the long-term, with improvements persisting in the last 10 years as well. These trends follow from the decreasing discharge from TN and TP sources in the watershed. The TP source reductions are not as apparent in the direct loads to the river, which may be part of the reason that tidal nutrient concentrations are not decreasing at as many stations in the short-term as the long-term. While degrading chlorophyll a and Secchi depth trends at several Potomac monitoring stations are concerning, recent improvements in summer oxygen concentrations are promising. The findings that chlorophyll a concentrations in the lower Potomac have either leveled out or improved may suggest a smaller amount of phytoplankton biomass available to fuel summer oxygen depletion. The responses of chlorophyll a, Secchi depth, and bottom DO are mixed in the Potomac tidal waters, but there are multiple possible reasons for this lag in response. Continuing to track water quality response and investigating these possibilities are important steps to understanding water quality patterns and changes in the Potomac River.

Pennsylvania, Virginia, West Viginia↗

Conservation status of the American horseshoe crab, (Limulus polyphemus): A regional assessment

Horseshoe crabs have persisted for more than 200 million years, and fossil forms date to 450 million years ago. The American horseshoe crab ( Limulus polyphemus ), one of four extant horseshoe crab species, is found along the Atlantic coastline of North America ranging from Alabama to Maine, USA with another distinct population on the coasts of Campeche, Yucatán and Quintana Roo in the Yucatán Peninsula, México. Although the American horseshoe crab tolerates broad environmental conditions, exploitation and habitat loss threaten the species. We assessed the conservation status of the American horseshoe crab by comprehensively reviewing available scientific information on its range, life history, genetic structure, population trends and analyses, major threats, and conservation. We structured the status assessment by six genetically-informed regions and accounted for sub-regional differences in environmental conditions, threats, and management. The transnational regions are Gulf of Maine (USA), Mid-Atlantic (USA), Southeast (USA), Florida Atlantic (USA), Northeast Gulf of México (USA), and Yucatán Peninsula (México). Our conclusion is that the American horseshoe crab species is vulnerable to local extirpation and that the degree and extent of risk vary among and within the regions. The risk is elevated in the Gulf of Maine region due to limited and fragmented habitat. The populations of horseshoe crabs in the Mid-Atlantic region are stable in the Delaware Bay area, and regulatory controls are in place, but the risk is elevated in the New England area as evidenced by continuing declines understood to be caused by over-harvest. The populations of horseshoe crabs in the Southeast region are stable or increasing. The populations of horseshoe crabs in the Florida Atlantic region show mixed trends among areas, and continuing population reductions at the embayment level have poorly understood causes. Within the Northeast Gulf of Mexico, causes of population trends are poorly understood and currently there is no active management of horseshoe crabs. Horseshoe crabs within México have conservation protection based on limited and fragmented habitat and geographic isolation from other regions, but elevated risk applies to the horseshoe crabs in the Yucatán Peninsula region until sufficient data can confirm population stability. Future species status throughout its range will depend on the effectiveness of conservation to mitigate habitat loss and manage for sustainable harvest among and within regions.

Reviews in Fish Biology and Fisheries↗

Blue carbon in a changing climate and a changing context

Blue carbon, a convenient term to encompass the climate mitigation value of coastal carbon dynamics, has received global policy attention and growing datasets to support management actions. Carbon stock assessments in mangroves, seagrass, and tidal marshes document significant carbon storage in soils. Models illustrate significant downward fluxes of carbon dioxide and limited methane emissions, making tidal wetland preservation and restoration notably potent for carbon dioxide removal (CDR). Natural variation in different carbon stocks and fluxes has led to prioritization efforts to characterize coastal lands across physical and biological gradients. However, a larger concern beyond upscaling carbon dynamics is the resilience of these stocks and fluxes with global changes. Data-informed models have greatly improved our assessments of the vulnerability of soil and biomass stocks, greenhouse gas (GHG) balance, and spatial extents. Accelerated sea-level rise is increasingly concerning, but its impacts vary by resilience context, as very few coastal lands are without direct human impact. As the landscape context has changed, blue carbon fluxes have also shifted in terms of importance and distribution. New incentives for tidal ecosystem management are expanding boundaries to include algal carbon and tidal transport of alkalinity, which bring additional co-benefits to coastal waters. Using examples from the conterminous USA on blue carbon stocks, radiative balance, and extent, this chapter explores timelines of physical and biogeochemical stressors and their application to past, current, and future climate mitigation functions of coastal ecosystems.

Book chapter↗

Applied Geochemistry Special Issue on Environmental geochemistry of modern mining

Environmental geochemistry is an integral part of the mine-life cycle, particularly for modern mining. The critical importance of environmental geochemistry begins with pre-mining baseline characterization and the assessment of environmental risks related to mining, continues through active mining especially in water and waste management practices, and culminates in mine closure. The enhanced significance of environmental geochemistry to modern mining has arisen from an increased knowledge of the impacts that historical and active mining can have on the environment, and from new regulations meant to guard against these impacts. New regulations are commonly motivated by advances in the scientific understanding of the environmental impacts of past mining. The impacts can be physical, chemical, and biological in nature. The physical challenges typically fall within the purview of engineers, whereas the chemical and biological challenges typically require a multidisciplinary array of expertise including geologists, geochemists, hydrologists, microbiologists, and biologists. The modern mine-permitting process throughout most of the world now requires that potential risks be assessed prior to the start of mining. The strategies for this risk assessment include a thorough characterization of pre-mining baseline conditions and the identification of risks specifically related to the manner in which the ore will be mined and processed, how water and waste products will be managed, and what the final configuration of the post-mining landscape will be. In the Fall 2010, the Society of Economic Geologists held a short course in conjunction with the annual meeting of the Geological Society of America in Denver, Colorado (USA) to examine the environmental geochemistry of modern mining. The intent was to focus on issues that are pertinent to current and future mines, as opposed to abandoned mines, which have been the focus of numerous previous short courses. The geochemical challenges of current and future mines share similarities with abandoned mines, but differences also exist. Mining and ore processing techniques have changed; the environmental footprint of waste materials has changed; environmental protection has become a more integral part of the mine planning process; and most historical mining was done with limited regard for the environment. The 17 papers in this special issue evolved from the Society of Economic Geologists’ short course. The relevant geochemical processes encompass the source, transport, and fate of contaminants related to the life cycle of a mine. Contaminants include metals and other inorganic species derived from geologic sources such as ore and solid mine waste, and substances brought to the site for ore processing, such as cyanide to leach gold. Factors, such as mine-waste mineralogy, hydrologic setting, mine-drainage chemistry, and microbial activity, that affect the hydrochemical risks from mining are reviewed by Nordstrom et al. In another paper, Nordstrom discusses baseline characterization at mine sites in a regulatory framework, and emphasizes the influence of mineral deposits in producing naturally elevated concentrations of many trace elements in surface water and groundwater. Surface water quality in mineralized watersheds is influenced by a number of processes that act on daily (diel) cycles and can produce dramatic variations in trace element concentrations as described by Gammons et al. Pre-mining baseline characterization studies should strive to capture the magnitude of these diel variations. Desbarats et al., using a case study of mine drainage from a gold mine, illustrate how elements that commonly occur as negatively charged species (anions) in solution, such as arsenic as arsenate, behave in an opposite fashion than most metals, which occur as positively charged species (cations). Significant improvement in the understanding of factors that influence the toxicity of metals to aquatic organisms in surface water has highlighted the importance of aqueous chemistry, particularly dissolved organic carbon, as described by Smith et al. Stream sediment contamination is another important pathway for affecting aquatic organisms, as reviewed by Besser et al. Understanding and predicting environmental consequences from mining begins with knowing the mineralogy and mineral reactivity of the ore, the wastes, and of secondary minerals formed later. Jamieson et al. review the importance of mineralogical studies in mine planning and remediation. A number of types of site-specific studies are needed to identify environmental risks related to individual mines. Lapakko reviews the general framework of mine waste characterization studies that are integral to the mine planning process. Hageman et al. present a comparative study of several static tests commonly used to characterize mine waste. The mining and ore processing practices employed at a specific mine site will vary on the basis of the commodities being targeted, the geology of the deposit, the geometry of the deposit, and the mining and ore processing methods used. Thus, these factors, in addition to the waste management practices used, can result in a variety of end-member mine waste features, each of which has its own set of challenges. Open pit mines and underground mines require waste rock to be removed to access ore. Waste rock presents unique problems because the rock is commonly mineralized at sub-economic grades and has not been processed to remove potentially problematic minerals, such as pyrite. Amos et al. examine the salient aspects of the geochemistry of waste rock. Mill tailings – the waste material after ore minerals have been removed – are a volumetrically important solid waste at many mine sites. Their fine grain size and the options for their management make their behavior in the environment distinct from that of waste rock. Lindsay et al. describe some of these differences through three case-study examples. Subaqueous disposal of tailings is another option described by Moncur et al. Cyanide leaching for gold extraction is a common method throughout the world. Johnson describes environmental aspects of cyanidation. Uranium mining presents unique environmental challenges, particularly since in-situ recovery has seen widespread use. Campbell et al. review the environmental geochemistry of uranium mining and current research on bioremediation. Ore concentrates from many types of metal mining undergo a pyrometallurgical technique known as smelting to extract the metal. Slag is the result of smelting, and it may be an environmental liability or a valuable byproduct, as described by Piatak et al. Finally, the open pits that result from surface mining commonly reach below the water table. At the end of mining, these pits may fill to form lakes that become part of the legacy of the mine. Castendyk et al., in two papers, review theoretical aspects of the environmental limnology of pit lakes. They also describe approaches that have been used to model pit lake water balance, wall-rock contributions to pit lake chemistry, pit lake water quality, and limnological processes, such as vertical mixing, through the use of three case studies.

Applied Geochemistry↗

Forecasting sea otter recolonization: Insights from isotopic analysis of modern and zooarchaeological populations

Retrospective datasets offer essential context for conservation by revealing species’ ecological roles before industrial-era human impacts. We analysed isotopic compositions of pre-industrial and modern sea otters ( Enhydra lutris ) to reconstruct pre-extirpation ecology and offer insights for management. Our study focuses on southeast Alaska (SEAK), where sea otters are recolonizing, and northern Oregon, where translocations are being considered. We measured bulk bone collagen δ 13 C and δ 15 N values and essential amino acid δ 13 C values of extirpated sea otters from archaeological contexts, and bulk isotopic values from vibrissae of modern SEAK sea otters. We compare these results with published isotopic data of potential prey and additional archaeological datasets. In SEAK, our data show pre-industrial sea otter populations consumed infaunal bivalves and used soft-sediment (33%) and kelp forest habitats (67%), with sub-regional variation. We anticipate current populations will expand into this historical niche, and conflict with regional traditional/subsistence bivalve fisheries will persist. In northern Oregon, isotopic data from extirpated sea otters indicate past consumption of low trophic level invertebrates and a stronger reliance on kelp forests (88%) rather than soft-sediment habitats, highlighting the importance of kelp forests for future translocations. Our work exemplifies the value of historical ecology in informing conservation strategies for recovering species.

Alaska, Oregon↗

Estimating sightability of greater sage-grouse at leks using an aerial infrared system and N-mixture models

Counts of grouse present at leks (breeding grounds) during spring are widely used to monitor population numbers and assess trends. However, only a proportion of birds available to count are detected resulting in a biased population index. We designed a study using an aerial integrated infrared imaging system (AIRIS) and experimental pseudo-leks to quantify sightability (proportion of birds detected) of conventional ground-based visual (GBV) surveys for greater sage-grouse Centrocercus urophasianus . Specifically, we calibrated AIRIS at pseudo-leks composed of known numbers of captively-raised birds, primarily ring-necked pheasant Phasianus colchicus . We then carried out AIRIS and GBV surveys, simultaneously, on nearby sage-grouse leks, allowing us to model AIRIS and GBV sightability. AIRIS detected ∼93% of birds on pseudo-leks while GBV detected ∼86% of sage-grouse on leks. Thus, the ground count observation error was –14% from the ‘true' number of male sage-grouse attending the leks. We also found sagebrush cover decreased sightability for GBV counts but did not influence sightability by AIRIS. Because standard GBV protocols typically make repeated counts of sage-grouse in a single morning, we also modeled repeated GBV counts using N -mixture models and found an 88% sightability, which was nearly the same as GBV sightability from the AIRIS analysis. This suggests that the use of repeated morning counts can potentially account for imperfect detection in the standard GBV surveys currently implemented. We also provide generalized correction values that could be employed by resource managers using either GBV or AIRIS to better estimate ‘true’ numbers of sage-grouse attending leks within similar environments to this study. The findings and interpretation presented can help guide effective monitoring protocols that account for observation error and improve accuracy of data used for population trend and abundance estimation.

California, Idaho, Nevada↗

Ground-water contamination at Wurtsmith Air Force Base, Michigan

A sand and gravel aquifer of glacial origin underlies Wurtsmith Air Force Base in northeastern lower Michigan. The aquifer overlies a thick clay layer at an average depth of 65 feet. The water table is about 10 feet below land surface in the western part of the Base and about 25 feet below land surface in the eastern part. A ground-water divide cuts diagonally across the Base from northwest to southeast. South of the divide, ground water flows to the Au Sable River; north of the divide, it flows to Van Etten Creek and Van Etten Lake. Mathematical models were used to aid in calculating rates of groundwater flow. Rates range from about 0.8 feet per day in the eastern part of the Base to about 0.3 feet per day in the western part. Models also were used as an aid in making decisions regarding purging of contaminated water from the aquifer. In 1977, trichloroethylene was detected in the Air Force Base water-supply system. It had leaked from a buried storage tank near Building 43 in the southeastern part of the Base and moved northeastward under the influence of the natural ground-water gradient and the pumping of Base water-supply wells. In the most highly contaminated part of the plume, concentrations are greater than 1,000 micrograms per liter. Current purge pumping is removing some of the trichloroethylene, and seems to have arrested its eastward movement. Pumping of additional purge wells could increase the rate of removal. Trichloroethylene has also been detected in ground water in the vicinity of the Base alert apron, where a plume from an unknown source extends northeastward off Base. A smaller, less well-defined area of contamination also occurs just north of the larger plume. Trichloroethylene, identified near the waste-treatment plant, seepage lagoons, and the northern landfill area, is related to activities and operations in these areas. Dichloroethylene and trichloroethylene occur in significant quantities westward of Building 43, upgradient from the major spill site. Benzene, indicative of ground-water contamination by a fuel substance, occurs in an area northeast of the bulk-fuel storage area. Analysis of a variety of chemical, physical, and biologic characteristics of water on the Base indicate that there is a measurable affect on ground-water quality from landfills, the seepage lagoon, and the waste-treatment plant.

Michigan↗

Initial Everglades Depth Estimation Network (EDEN) digital elevation model research and development

The Everglades Depth Estimation Network (EDEN) offers a consistent and documented dataset that can be used to guide large-scale field operations, to integrate hydrologic and ecological responses, and to support biological and ecological assessments that measure ecosystem responses to the Comprehensive Everglades Restoration Plan (Telis, 2006). To produce historic and near-real time maps of water depths, the EDEN requires a system-wide digital elevation model (DEM) of the ground surface. Accurate Everglades wetland ground surface elevation data were non-existent before the U.S. Geological Survey (USGS) undertook the collection of highly accurate surface elevations at the regional scale. These form the foundation for EDEN DEM development. This development process is iterative as additional high accuracy elevation data (HAED) are collected, water surfacing algorithms improve, and additional ground-based ancillary data become available. Models are tested using withheld HAED and independently measured water depth data, and by using DEM data in EDEN adaptive management applications. Here the collection of HAED is briefly described before the approach to DEM development and the current EDEN DEM are detailed. Finally future research directions for continued model development, testing, and refinement are provided.

Florida↗