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At least 865 records · Page 48Linked to original sources

Chinook salmon Oncorhynchus tshawytscha (Walbaum, 1792) life history influences how diagnostic cranial structures relate to fish length

Diagnostic bones can aid in identification and size determination of fishes from ingested prey, archaeological remains or damaged specimens. We extracted diagnostic structures, including cleithra, dentaries, opercles and otoliths, from juvenile spring Chinook salmon ( Oncorhynchus tshawytscha ) from three distinct groups: hatchery, naturally produced and surrogate, representing shared genetics. Although our observations highlight that growth and life history are important considerations in structuring allometry, we note that a wide variety of diagnostic bones and measurement axes may be suitable for determining body lengths where remains may be damaged or incomplete.

Journal of Fish Biology↗

Trophic structure of mesopelagic fishes in the Gulf of Mexico revealed by gut content and stable isotope analyses

Mesopelagic fishes represent an important component of the marine food web due to their global distributions, high abundances and ability to transport organic material throughout a large part of the water column. This study combined stable isotope (SIAs) and gut content analyses (GCAs) to characterize the trophic structure of mesopelagic fishes in the North-Central Gulf of Mexico. Additionally, this study examined whether mesopelagic fishes utilized chemosynthetic energy from cold seeps. Specimens were collected (9–25 August 2007) over three deep (>1,000 m) cold seeps at discrete depths (surface to 1,503 m) over the diurnal cycle. GCA classified 31 species (five families) of mesopelagic fishes into five feeding guilds: piscivores, large crustacean consumers, copepod consumers, generalists and mixed zooplanktivores. However, these guilds were less clearly defined based on stable isotope mixing model (MixSIAR) results, suggesting diets may be more mixed over longer time periods (weeks–months) and across co-occurring species. Copepods were likely important for the majority of mesopelagic fishes, consistent with GCA (this study) and previous literature. MixSIAR results also identified non-crustacean prey items, including salps and pteropods, as potentially important prey items for mesopelagic fishes, including those fishes not analysed in GCA ( Sternoptyx spp. and Melamphaidae). Salps and other soft-bodied species are often missed in GCAs. Mesopelagic fishes had δ 13 C results consistent with particulate organic matter serving as the baseline organic carbon source, fueling up to three trophic levels. Fishes that undergo diel vertical migration were depleted in 15 N relative to weak migrators, consistent with depth-specific isotope trends in sources and consumers, and assimilation of 15 N-depleted organic matter in surface waters. Linear correlations between fish size and δ 15 N values suggested ontogenetic changes in fish diets for several species. While there was no direct measure of mesopelagic fishes assimilating chemosynthetic material, detection of infrequent consumption of this food resource may be hindered by the assimilation of isotopically enriched photosynthetic organic matter. By utilizing multiple dietary metrics ( e.g . GCA, δ 13 C, δ 15 N, MixSIAR), this study better defined the trophic structure of mesopelagic fishes and allowed for insights on feeding, ultimately providing useful baseline information from which to track mesopelagic trophodynamics over time and space.

Marine Ecology↗

Sedimentological and petrographic analysis of drill core FC77-1 from the flank of the central uplift, Flynn Creek impact structure, Tennessee

Drill core FC 77‐1 on the flank of the central uplift, Flynn Creek impact structure, Tennessee, contains 175 m of impact breccia lying upon uplifted Lower Paleozoic carbonate target stratigraphy. Sedimentological analysis of this 175‐m interval carbonate breccia shows that there are three distinct sedimentological units. In stratigraphic order, unit 1 (175–109 m) is an overall coarsening‐upward section, whereas the overlying unit 2 (109–32 m) is overall fining‐upward. Unit 3 (32–0 m) is a coarsening‐upward sequence that is truncated at the top by postimpact erosion. Units 1 and 3 are interpreted as debris or rock avalanches into finer sedimentary deposits within intracrater marine waters, thus producing progressively coarser, coarsening‐upward sequences. Unit 2 is interpreted to have formed by debris or rock avalanches into standing marine waters, thus forming sequential fining‐upward deposits. Line‐logging of clasts ranging from 5 mm to 1.6 m, and thin‐section analysis of selected drill core samples (including clasts < 5 mm), both show that the Flynn Creek impact breccia consists almost entirely of dolostone clasts (90%), with minor components of cryptocrystalline melt clasts, chert and shale fragments, and clastic grains. Cryptocrystalline melt clasts, which appear isotropic in thin section, are in fact made of exceedingly fine quartz crystals that exhibit micro‐Fourier transform infrared (FTIR ) and micro‐Raman spectra consistent with crystalline quartz. These cryptocrystalline melt clasts are the first melt clasts of any kind to be reported from Flynn Creek impact structure.

Tennessee↗

Ceres internal structure from geophysical constraints

Thermal evolution modeling has yielded a variety of interior structures for Ceres, ranging from a modestly differentiated interior to more advanced evolution with a dry silicate core, a hydrated silicate mantle, and a volatile‐rich crust. Here we compute the mass and hydrostatic flattening from more than one hundred billion three‐layer density models for Ceres and describe the characteristics of the population of density structures that are consistent with the Dawn observations. We show that the mass and hydrostatic flattening constraints from Ceres indicate the presence of a high‐density core with greater than a 1σ probability, but provide little constraint on the density, allowing for core compositions that range from hydrous and/or anhydrous silicates to a mixture of metal and silicates. The crustal densities are consistent with surface observations of salts, water ice, carbonates, and ammoniated clays, which indicate hydrothermal alteration, partial fractionation, and the possible settling of heavy sulfide and metallic particles, which provide a potential process for increasing mass with depth.

Meteoritics and Planetary Science↗

Conservation genomics of an endangered montane amphibian reveals low population structure, low genomic diversity and selection pressure from disease

Wildlife diseases are a major global threat to biodiversity. Boreal toads ( Anaxyrus [Bufo] boreas ) are a state-endangered species in the southern Rocky Mountains of Colorado and New Mexico, and a species of concern in Wyoming, largely due to lethal skin infections caused by the amphibian chytrid fungus Batrachochytrium dendrobatidis ( Bd ). We performed conservation and landscape genomic analyses using single nucleotide polymorphisms from double-digest, restriction site-associated DNA sequencing in combination with the development of the first boreal toad (and first North American toad) reference genome to investigate population structure, genomic diversity, landscape connectivity and adaptive divergence. Genomic diversity ( π = 0.00034–0.00040) and effective population sizes ( N e = 8.9–38.4) were low, likely due to post-Pleistocene founder effects and Bd -related population crashes over the last three decades. Population structure was also low, likely due to formerly high connectivity among a higher density of geographically proximate populations. Boreal toad gene flow was facilitated by low precipitation, cold minimum temperatures, less tree canopy, low heat load and less urbanization. We found >8X more putatively adaptive loci related to Bd intensity than to all other environmental factors combined, and evidence for genes under selection related to immune response, heart development and regulation and skin function. These data suggest boreal toads in habitats with Bd have experienced stronger selection pressure from disease than from other, broad-scale environmental variations. These findings can be used by managers to conserve and recover the species through actions including reintroduction and supplementation of populations that have declined due to Bd .

Colorado↗

Assessing population genomic structure and polyploidy: A crucial step for native plant restoration

Establishing an effective restoration program requires baseline genetic information to make sound decisions for seed increase and transfer. For many plants this information is lacking, especially among native forbs that are critical for pollinator health. Erigeron speciosus is a widespread, perennial forb occupying montane environments in the western United States and Canada. This species is important in fostering pollinator diversity. Our study examines the population genetic patterns across the species range using reduced-representation sequencing and surveys for genome duplication using flow cytometry and cytology. These genomic tools provide critical information for seed increase and seed transfer, necessary for restoration programs. Population genetic differentiation ( F ST ) average was 0.13 and ranged from 0.05 to 0.24 among 23 collection sites. Model-based Bayesian clustering supported a model with collection sites grouped into two populations, occupying distinct geographic regions of this species range. A genetic distance-based neighbor-joining tree also supported this division. Flow cytometry of 53 samples from 17 populations had 2C values that ranged from 1.7 to 3.6 pg with a mean 2C value of 2.3 pg. Putative triploids were found in two individuals from one collection site. The spatial distribution of genetic structure supports regionally based taxonomic descriptions of two varieties: speciosus in the North and macranthus in the South. This assessment of genetic structure and genome duplication describes an effective approach in developing baseline genetic information for restoration species, especially those species that may harbor complex taxonomy and polyploidy.

Colorado, Idaho, Montana, Oregon, South Dakota, Ut↗

Deep drilling into the Chesapeake Bay impact structure

Samples from a 1.76-kilometer-deep corehole drilled near the center of the late Eocene Chesapeake Bay impact structure (Virginia, USA) reveal its geologic, hydrologic, and biologic history. We conducted stratigraphic and petrologic analyses of the cores to elucidate the timing and results of impact-melt creation and distribution, transient-cavity collapse, and ocean-water resurge. Comparison of post-impact sedimentary sequences inside and outside the structure indicates that compaction of the crater fill influenced long-term sedimentation patterns in the mid-Atlantic region. Salty connate water of the target remains in the crater fill today, where it poses a potential threat to the regional groundwater resource. Observed depth variations in microbial abundance indicate a complex history of impact-related thermal sterilization and habitat modification, and subsequent post-impact repopulation.

Science↗

Nimbus IV view of the major structural features of Alaska

Notwithstanding the relatively low degree of ground resolution, many of the major structural features of Alaska can be identified on the Nimbus IV IDCS image, exposed at an altitude of 600 nautical miles (1100 km). In addition, linears of regional extent that may be structurally controlled can be seen, many of which have not yet been recognized in surface mapping. The synoptic view provided by the image brings into focus an orthogonal set of fractures trending north-northeast and east-southeast and not heretofore apparent in regional maps of Alaska. This orthogonal fracture set may reflect a conjugate set of fractures within the crust, which has exerted significant control over the geologic history of the state. Increased resolution in other images from space platforms, such as the resolution of 200 to 650 feet (60 to 200 m) planned for the satellite television cameras of the ERTS program, will permit the discernment of finer detail and a greater accuracy in identifying and locating geologic features.

Alaska↗

Earthquake-induced structures in sediments of Van Norman Lake, San Fernando, California

The 9 February 1971 earthquake in the San Fernando Valley damaged the Lower Van Norman Dam severely enough to warrant draining the reservoir. In March 1972 the sediment deposited on the reservoir floor was examined to determine whether the 1971 earthquake had induced sediment deformation and, if so, what types. A zone of deformational structures characterized by small-scale loads and slightly recumbent folds associated with the 1971 earthquake was discovered, in addition to two older zones of load structures. Each of the zones has been tentatively correlated with an historic earthquake.

California↗

Structure of the atmosphere of Venus up to 110 kilometers: Preliminary results from the four Pioneer Venus entry probes

The four Pioneer Venus entry probes transmitted data of good quality on the structure of the atmosphere below the clouds. Contrast of the structure below an altitude of 50 kilometers at four widely separated locations was found to be no more than a few degrees Kelvin, with slightly warmer temperatures at 30° south latitude than at 5° or 60° north. The atmosphere was stably stratified above 15 or 20 kilometers, indicating that the near-adiabatic state is maintained by the general circulation. The profiles move from near-adiabatic toward radiative equilibrium at altitudes above 40 kilometers. There appears to be a region of vertical convection above the dense cloud deck, which lies at 47.5 to 49 kilometers and at temperature levels near 360 K. The atmosphere is nearly isothermal around 100 kilometers (175 to 180 K) and appears to exhibit a sizable temperature wave between 60 and 70 kilometers. This is where the 4-day wind is believed to occur. The temperature wave may be related to some of the wavelike phenomena seen in Mariner 10 ultraviolet photographs.

Science↗

40Ar-39Ar dating of the Manson impact structure: A Cretaceous-Tertiary boundary crater candidate

The mineralogy of shocked mineral and lithic grains in the Cretaceous-Tertiary (K-T) boundary claystone worldwide is most consistent with a bolide impact on a continent. Both the concentrations and sizes of these shocked grains are greatest in the western interior of North America. These data suggest that the Manson impact structure in north-central Iowa is a viable candidate for the K-T boundary impact event. Argon-40–argon-39 age spectrum dating of shocked microcline from the crystalline central uplift of the Manson impact structure indicates that there was severe argon-40 loss at 65.7 ± 1.0 million years ago, an age that is indistinguishable from that of the K-T boundary, within the limits of analytical precision.

Science↗

Impact origin of the Chesapeake Bay structure and the source of the North American tektites

Seismic profiles, drill core samples, and gravity data suggest that a complex impact crater ~35.5 million years old and 90 kilometers in diameter is buried beneath the lower Chesapeake Bay. The breccia that fills the structure contains evidence of shock metamorphism, including impact melt breccias and multiple sets of planar deformation features (shock lamellae) in quartz and feldspar. The age of the crater and the composition of some breccia clasts are consistent with the Chesapeake Bay impact structure being the source of the North American tektites.

Maryland, Virginia↗

Population genetic structure of clinical and environmental isolates of Blastomyces dermatitidis based on 27 polymorphic microsatellite markers

Blastomyces dermatitidis , a thermally dimorphic fungus, is the etiologic agent of North American blastomycosis. Clinical presentation is varied, ranging from silent infections to fulminant respiratory disease and dissemination to skin and other sites. Exploration of the population genetic structure of B. dermatitidis would improve our knowledge regarding variation in virulence phenotypes, geographic distribution, and difference in host specificity. The objective of this study was to develop and test a panel of microsatellite markers to delineate the population genetic structure within a group of clinical and environmental isolates of B. dermatitidis . We developed 27 microsatellite markers and genotyped B. dermatitidis isolates from various hosts and environmental sources ( n =112). Assembly of a neighbor-joining tree of allele-sharing distance revealed two genetically distinct groups, separated by a deep node. Bayesian admixture analysis showed that two populations were statistically supported. Principal coordinate analysis also reinforced support for two genetic groups, with the primary axis explaining 61.41% of the genetic variability. Group 1 isolates average 1.8 alleles/locus, whereas group 2 isolates are highly polymorphic, averaging 8.2 alleles/locus. In this data set, alleles at three loci are unshared between the two groups and appear diagnostic. The mating type of individual isolates was determined by PCR. Both mating type-specific genes, the HMG and &alpha;-box domains, were represented in each of the genetic groups, with slightly more isolates having the HMG allele. One interpretation of this study is that the species currently designated B. dermatitidis includes a cryptic subspecies or perhaps a separate species.

Applied and Environmental Microbiology↗

Common hydraulic fracturing fluid additives alter the structure and function of anaerobic microbial communities

The development of unconventional oil and gas (UOG) resources results in the production of large volumes of wastewater containing a complex mixture of hydraulic fracturing chemical additives and components from the formation. The release of these wastewaters into the environment poses potential risks that are poorly understood. Microbial communities in stream sediments form the base of the food chain and may serve as sentinels for changes in stream health. Iron-reducing organisms have been shown to play a role in the biodegradation of a wide range of organic compounds, and so to evaluate their response to UOG wastewater, we enriched anaerobic microbial communities from sediments collected upstream (background) and downstream (impacted) of an UOG wastewater injection disposal facility in the presence of hydraulic fracturing fluid (HFF) additives: guar gum, ethylene glycol, and two biocides, 2,2-dibromo-3-nitrilopropionamide (DBNPA) and bronopol (C 3 H 6 BrNO 4 ). Iron reduction was significantly inhibited early in the incubations with the addition of biocides, whereas amendment with guar gum and ethylene glycol stimulated iron reduction relative to levels in the unamended controls. Changes in the microbial community structure were observed across all treatments, indicating the potential for even small amounts of UOG wastewater components to influence natural microbial processes. The microbial community structure differed between enrichments with background and impacted sediments, suggesting that impacted sediments may have been preconditioned by exposure to wastewater. These experiments demonstrated the potential for biocides to significantly decrease iron reduction rates immediately following a spill and demonstrated how microbial communities previously exposed to UOG wastewater may be more resilient to additional spills.

Applied and Environmental Microbiology↗

Stratigraphy, lithologies, and sedimentary structures of Owens Lake core OL-92

Owens Lake, a now-dry lake in southeastern California immediately east of the southern Sierra Nevada, was the site of a coring project designed to obtain a long paleoclimatic record. During the ensuing study, lacustrine deposits were recovered by the 323 m long core designated “OL-92.” The presence of the Bishop ash (ca. 760 ka) and the Matuyama-Brunhes paleomagnetic reversal (ca. 780 ka) near the base of core OL-92 shows that this core represents about 800 k.y. of deposition in Owens Lake. The sediments are dominantly lacustrine clay, silt, and fine sand, although some intervals contain as much as 40 wt % CaCO3. The lowest ~57 m of recovered sediments is mostly silt or clay, but several sand beds are present; the overlying ~60 m of sediment is similar, but its sand content is more dispersed. Together, these two units are composed of ~70 wt % silt and clay and ~30 wt % sand, suggesting deposition in lakes that fluctuated between moderately deep and shallow. Overlying them is ~201 m of sediments that were mostly deposited in deep water; they consist predominantly of silt and clay but include two thin, coarse-sand beds. An oolite bed forms the upper ~4 m of natural deposits, and an anthropogenic salt bed, >2 m thick, forms much of the present surface. In addition to the Bishop ash, several much thinner tephra layers are also present. About 70% of the clastic-sediment units are massive, some clearly because of bioturbation; other units display a thin bedding defined by changes in color or grain size. Rhythmic bedding, observed in numerous segments <1 m thick, seems to represent cyclical events ~100 yr long. Thin color bands caused by the chemical alteration of sediments on each side of hairline fractures create irregular subvertical veins. Clastic dikes, as much as ~2 cm wide and ~75 cm long, characterize some zones. Bioturbation structures, sand pods, ice-rafted(?) granules, small faults, minor discontinuities, and possible turbidity-current structures are also present. Lithologic variations, in combination with other evidence, indicate that from ca. 810–645 ka, Owens was most commonly a moderately deep fresh-water lake; from ca. 645–450 ka, it was more commonly a shallow—but still fresh-water—lake; from ca. 450–5 ka, it was almost continuously a deep, mostly fresh-water lake; and after ca. 5 ka, it was a shallow, moderately saline lake. Other variations in the sediments and their contents, however, indicate additional cycles of average lake-overflow volumes that are not reflected by sediment-size changes.

California↗

Stratigraphy and structure of west-central Vermont

The lithologic units recognizable in the fossiliferous succession along southern Lake Champlain are structurally continuous with and traceable eastward into the “marble belt” of west-central Vermont immediately west of the Green Mountain Front. They are also traceable northward through west-central Vermont into a succession in northwestern Vermont bounded on the east and west by major thrusts, where they pass laterally northeastward into fossiliferous shales, the faunal zones of which are correlated with those along southern Lake Champlain and in the Hudson and Mohawk valleys. The Cambrian strata are traced into west-central from northwestern Vermont whereas the Ordovician correlation is with rocks in the Mohawk-Hudson-Champlain region. Certain of the Upper Cambrian strata can be correlated with established formations of this age in both of the outlying areas. The structural pattern reflects movements dependent upon the original distribution of sedimentary facies. Interbedded Carnbro-Ordovician limestones and dolomites grade westward into foreland sandstones and eastward into geosynclinal shales. Cambrian and early Ordovician sandstone tongues extend far to the east. Later Ordovician strata of the shale facies overlie the calcareous and sandy succession and are locally unconformable on it. In the Taconic Range allochthonous Cambrian strata of shale facies are superposed upon the autochthonous Ordovician beds. The rocks of the klippe were derived from a zone at least 50 miles east of the present westernmost exposures, arriving there by movements confined largely to the shale facies. Flexural folding and thrusting, effects of alternating competency and incompetency of the foreland sequence, affected the latter succession and possibly the Taconic Allochthone. Breaking of competent strata in the flexures initiated the thrusts; thrusting continued by the stripping of competent from incompetent beds. This was accompanied by counterclockwise rotation of the thrust slices around pivotal zones bordering on a foreland massif to the southwest. Thus rock cropping out in the north-south thrust slices originally extended northeast-southwest. The thrusts are concentric to the Adirondack crystallines and are cut by the Adirondack normal faults; probably they were warped during normal faulting and uplift of the Adirondacks.

Vermont↗

Older Precambrian structure in Arizona

The older Precambrian rocks of Arizona include the Vishnu, Yavapai, and Pinal schists, all overlain unconformably by nonmetamorphosed younger Precambrian rocks. The older Precambrian schists, unnamed gneisses, and associated granitic masses crop out in many of the mountain ranges southwest of the Colorado plateau. The stratigraphy and structure of the schists can be unraveled to some extent by detailed mapping, and work now in progress by the U. S. Geological Survey in the Bagdad, Prescott-Jerome, and Little Dragoon areas, is revealing folded structures trending generally northwest to northeast. Earlier work by Wilson in the Mazatzal Mountains revealed southeastward-dipping, low-angle thrust faults of older Precambrian age. In the Bagdad and Prescott-Jerome areas, a variety of igneous rocks, including rhyolite, alaskite porphyry, diorite, and gabbro, were intruded into the schists prior to the widespread invasion of granite. Only one period of orogeny followed by the intrusion of granitic rocks can be recognized in each area studied to date. The degree of metamorphism is not uniform and some of the pre-intrusive rocks are nonfoliated, whereas others are highly schistose. Some of the intrusive rocks, including granite, show the effect of dynamic metamorphism. The grade of metamorphism is low to intermediate, except near the large masses of granite where coarse-grained sillimanite-bearing schists are found.

Arizona↗

Structure, metamorphism, and plutonism in the south-central Klamath Mountains, California

In the south-central Klamath Mountains 50 miles of the the north-trending central metamorphic belt and adjacent parts of the eastern Paleozoic and western Paleozoic and Triassic belts have been mapped and studied in detail. Within the central metamorphic belt a sequence of three lithologically distinctive metamorphic units has been recognized (from bottom to top): (1) siliceous metasedimentary rocks and greenstones of the Stuart Fork Formation; (2) the Salmon Hornblende Schist; and (3) siliceous, calcareous, and amphibolitic rocks, predominantly metasedimentary, of the Grouse Ridge Formation. The age of these metamorphic rocks is uncertain; they are known only to predate intrusion of Late Jurassic (Nevadan) granitic rocks. Ultramafic rocks, mainly alpine-type peridotites, were emplaced before the granitic rocks and occur primarily in a single large sheetlike body which separates the central metamorphic belt from the eastern Paleozoic belt. Granitic plutons, including quartz diorites, trondhjemites, granodiorites, diorites, and gabbros, in decreasing order of abundance, range in size from less than 1 to about 80 square miles in area. Two orogenic phases in the central metamorphic belt have been distinguished by structural and textural features. A late deformation uniformly affected the metamorphic terrane and the ultramafic rocks but predated granitic rocks. It was accompanied by some metamorphism in the lower to middle greenchist facies and produced upright folds that trend south and plunge gently. An earlier phase affected the various rock units differentially; it produced widespread recumbent folding and upper greenschist- to amphibolite-facies metamorphism in Salmon and Grouse Ridge rocks, but involved the underlying Stuart Fork Formation less severely, producing at least local recumbent folding and lower greenschist-facies metamorphism. The preferred interpretation of this upward increase in structural complexity and metamorphic grade is that the Salmon-Grouse Ridge sequence is a thrust sheet which overrode the Stuart Fork rocks concurrently with emplacement of the ultramafic rocks during the culmination of early recumbent folding and metamorphism. Thrusting was then followed by upright folding during the waning stages of regional metamorphism. The first deformational phase, and possibly the second, occurred during late Paleozoic time as indicated by recent isotopic ages of Salmon Hornblende Schist.

California↗