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Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California: 2010

Trace-metal concentrations in sediment and in the clam Macoma petalum (formerly reported as Macoma balthica ), clam reproductive activity, and benthic macroinvertebrate community structure were investigated in a mudflat 1 kilometer south of the discharge of the Palo Alto Regional Water Quality Control Plant (PARWQCP) in South San Francisco Bay, Calif. This report includes the data collected for the period January 2010 to December 2010 and extends a critical long-term biogeochemical record that dates back to 1974. These data serve as the basis for the City of Palo Alto’s Near-Field Receiving Water Monitoring Program initiated in 1994. In 2010, metal concentrations in both sediments and clam tissue were among the lowest concentrations on record and consistent with results observed since 1991. Following significant reductions in the late 1980s, silver (Ag) and copper (Cu) concentrations appear to have stabilized. Annual mean concentrations have fluctuated modestly (2–4 fold) in a nondirectional manner. Data for other metals, including chromium, mercury, nickel, selenium, vanadium, and zinc, have been collected since 1994. Over this period, concentrations of these elements, which likely reflect regional inputs and systemwide processes, have remained relatively constant, aside from typical seasonal variation that is common to all elements. Within years, the winter months (January–March) generally exhibit maximum concentrations, with a decline to annual minima in spring through fall. Concentrations of chromium (Cr) and vanadium (V) in sediments have shown an upward trend since 2005. Chromium concentrations are approaching the record maximum levels observed in 2003, and concentrations of V in sediments in 2010 were the highest annual average concentrations on record. Mercury (Hg) concentrations in sediments and M. petalum in 2010 were comparable to concentrations observed in 2009 and were generally consistent with data from previous years. Selenium (Se) concentrations in sediment varied among years and showed no sustained temporal trend. During 2009–2010, sedimentary Se concentrations declined from the record high observed in 2008 to concentrations that were among the lowest on record. Selenium in M. petalum was slightly higher in 2010 than in 2009. Overall, Cu and Ag concentrations in sediments and soft tissues of the clam, M. petalum , remained representative of the concentrations observed since 1991 following significant reductions in the discharge of these elements from the PARWQCP. This indicates that, as with other elements of regulatory interest, regional-scale factors now largely affect sedimentary and bioavailable concentrations of Ag and Cu. Analyses of the benthic community structure of a mudflat in South San Francisco Bay over a 37-year period show that changes in the community have occurred concurrent with reduced concentrations of metals in the sediment and in the tissues of the biosentinel clam, M. petalum , from the same area. Analysis of the M. petalum community shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissues of this organism. Reproductive activity is presently stable (2010), with almost all animals initiating reproduction in the fall and spawning the following spring of most years. The community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that indicates a more stable community that is subjected to fewer stressors. In addition, two of the opportunistic species ( Ampelisca abdita and Streblospio benedicti ) that brood their young and live on the surface of the sediment in tubes have shown a continual decline in dominance coincident with the decline in metals; both species had short-lived rebounds in abundance in 2008, 2009, and 2010. Heteromastus filiformis (a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying its eggs on or in the sediment) showed a concurrent increase in dominance and, in last several years prior to 2008, showed a stable population. An unidentified disturbance occurred on the mudflat in early 2008 that resulted in the loss of the benthic animals, except for those deep-dwelling animals like Macoma petalum . Animals immediately returned to the mudflat in 2008, which was the first indication that the disturbance was not due to a persistent toxin or to anoxia. The use of functional ecology was highlighted in the 2010 benthic community data, which show that the animals that have now returned to the mudflat are those that can respond successfully to a physical, nontoxic disturbance. Today, community data show a mix of animals that consume the sediment, filter feed, have pelagic larvae that must survive landing on the sediment, and brood their young. USGS scientists continue to observe the community’s response to the defaunation event because it allows them to examine the response of the community to a natural disturbance (possible causes include sediment accretion or freshwater inundation) and compare this recovery to the long-term recovery observed in the 1970s when the decline in sediment pollutants was the dominating factor.

California↗

Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California; 2009

Results reported herein include trace element concentrations in sediment and in the clam Macoma petalum (formerly reported as Macoma balthica (Cohen and Carlton, 1995)), clam reproductive activity, and benthic macroinvertebrate community structure for a mudflat one kilometer south of the discharge of the Palo Alto Regional Water Quality Control Plant (PARWQCP) in South San Francisco Bay. This report includes data collected for the period January 2009 to December 2009 and extends a critical long-term biogeochemical record dating back to 1974. These data serve as the basis for the City of Palo Alto’s Near-Field Receiving Water Monitoring Program, initiated in 1994. In 2009, metal concentrations in both sediments and clam tissue were among the lowest concentrations on record and consistent with results observed since 1991. Following significant reductions in the late 1980s, silver (Ag) and copper (Cu) concentrations appeared to have stabilized. Annual mean concentrations have fluctuated modestly (2–4 fold) in a nondirectional manner. Data for other metals, including chromium, mercury, nickel, selenium, vanadium, and zinc, have been collected since 1994. Over this period, concentrations of these elements, which more likely reflect regional inputs and systemwide processes, have remained relatively constant, aside from typical seasonal variation that is common to all elements. Within years, the winter months (January–March) generally exhibit maximum concentrations, with a decline to annual minima in spring through fall. Mercury (Hg) in sediments and M. petalum were comparable to concentrations observed in 2008 and were generally consistent with data from previous years. Selenium (Se) concentrations in sediment varied among years and showed no sustained temporal trend. In 2009, sedimentary Se concentrations declined from the record high concentrations observed in 2008 to concentrations that were among the lowest on record. Selenium in M. petalum was unchanged from 2008. Overall, Cu and Ag concentrations in sediments and soft tissues of the clam, M. petalum , remained representative of the concentrations observed since 1991 following significant reductions in the discharge of these elements from the PARWQCP. This suggests that, as with other elements of regulatory interest, regional-scale factors now largely influence sedimentary and bioavailable concentrations of Ag and Cu. Analyses of the benthic community structure of a mudflat in South San Francisco Bay over a 36-year period show that changes in the community have occurred concurrent with reduced concentrations of metals in the sediment and in the tissues of the biosentinel clam, M. petalum , from the same area. Analysis of the reproductive activity of M. petalum shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissues of this organism. Reproductive activity is presently stable, with almost all animals initiating reproduction in the fall and spawning the following spring of most years. The community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that suggests a more stable community that is subjected to fewer stressors. In addition, two of the opportunistic species ( Ampelisca abdita and Streblospio benedicti ) that brood their young and live on the surface of the sediment in tubes have shown a continual decline in dominance coincident with the decline in metals; both species had short-lived rebounds in abundance in 2008 and 2009. Heteromastus filiformis (a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying its eggs on or in the sediment) showed a concurrent increase in dominance, with the last several years prior to 2008 showing a stable population. An unidentified disturbance occurred on the mudflat in early 2008 that resulted in the loss of the benthic animals, except for those deep-dwelling animals like Macoma petalum . Animals immediately returned to the mudflat in 2008, which was the first indication that the disturbance was not due to a persistent toxin or to anoxia. The use of functional ecology was highlighted in the 2009 benthic community data, which show that the animals that have now returned to the mudflat are those that can respond successfully to a physical, nontoxic disturbance. Today we see plenty of animals that consume the sediment, have pelagic larvae that must survive landing on the sediment, and in some cases have eggs that must survive being laid in the sediment. We continue to observe the community’s response to the defaunation event, because it allows us to examine the response of the community to a natural disturbance (possible causes include sediment accretion or freshwater inundation) and compare this recovery to the longer-term recovery we observed in the 1970s, when the decline in sediment pollutants was the dominating factor.

California↗

Vegetation changes over 12 years in ungrazed and grazed Conservation Reserve Program Grasslands in the central and southern plains

The Conservation Reserve Program (CRP) established under the 1985 Food Security Act has the fundamental objectives of jointly providing economic support to segments of the agricultural community and conservation of natural resources (Osborn, 1997; Heard and others, 2000). Although soil loss on highly erodable lands was the principal natural resource conservation issue addressed in the 1985 CRP, improving water quality and wildlife habitat both became important considerations as the program evolved (Farmer and others, 1988). For example, Best and others (1997) found that production of young birds on CRP fields in the Midwest was ≥15 times the production on row-crop fields because of improved habitat. The increasing importance of wildlife habitat is reflected in continuing refinement of the Environmental Benefits Index (EBI) used by the U.S. Department of Agriculture (USDA) to quantify the potential benefits of enrolling lands in CRP (Osborn, 1997; Ribaudo and others, 2001). The refinements reflect input furnished by federal, state, and non-government organizations seeking greater wildlife habitat quality on CRP lands (Roseberry and David, 1994; Hughes and others, 1995; Millenbah and others, 1996; Patterson and Best, 1996; Rodgers, 1999; Allen and others, 2001). Refinement in the EBI has changed the types of grasses planted on newly enrolled land. In early CRP signups (1 through 11), 71% of new grassland acres were planted to introduced grasses and legumes [Conservation Practice (CP) 1] while 29% of the acres were planted to native grasses (CP2) (Osborn and others, 1992). By the 27th signup in July 2004, over 34.8 million acres (14 million ha) were enrolled in the CRP. More than 73% of these lands were planted to various mixtures of introduced (CP1) or native (CP2) grasses for a minimal contract period of 10 years (USDA, 2004). Continuation of grass plantings under the 2002 Farm Bill may result in CRP lands furnishing grass dominated cover for 20 or more consecutive years. The species of grass established in seeded grasslands can have a major influence on the potential quality of wildlife habitat where vegetation is maintained over a multi-year period. Different species of grass may have comparable abilities to alleviate soil erosion but furnish dissimilar qualities of wildlife habitat (fig. 1). For example, smooth brome, an introduced cool-season grass (grass species and scientific names are presented in table 1), is highly valued for its erosion control and forage attributes (Casler and Carlson, 1995). Switchgrass, a native warm-season grass, also is valued for its soil and water conservation qualities (Moser and Vogel, 1995) but provides greater benefits for some species of wildlife (Clubine, 1995). The quality of nesting and winter cover for ring-necked pheasants (Phasianus colchicus) furnished by smooth brome on northeastern Colorado CRP lands is inferior to that provided by the taller, more robust switchgrass (Allen, 1994). Characteristics of the agricultural landscape surrounding individual CRP fields also play a role in the wildlife habitat potential of CRP plantings (Weber and others, 2002; Nusser and others, 2004). of native and seeded grasslands change in response to the presence (and absence) of physical disturbances such as fire, grazing, tillage, and haying (Hobbs and Huenneke, 1992; Millenbah and others, 1996; Allen and others, 2001; Renfrew and Ribic, 2001; Swengel and Swengel, 2001). The perpetuation of diversity in species composition and vegetation structure following disturbance sustains desirable habitat for a variety of grassland-dependent wildlife (Hall and Willig, 1994; Barnes and others, 1995; King and Savidge, 1995; Granfors and others, 1996; Herkert and others, 1996; Kurzejeski, 1996; Patterson and Best, 1996; Klute and others, 1997). Undisturbed grasslands have lower grass and forb species diversity, greater amounts of dead plant material, decreased as well as seasonally delayed productivity, and diminished structural diversity of vegetation (Peet and others, 1975; Rice and Parenti, 1978; Butler and Briske, 1988; Campa and Winterstein, 1992). Recommendations for the timing of disturbance to increase grass and forb species diversity range from 3 to 8 years following establishment of seeded grasslands in the northern Great Plains and Midwest (Duebbert and others, 1981; Higgens, 1987; Millenbah and others, 1996). The management interval, however, is affected by climatic conditions, soils, grass species, and management history of the individual stand. We quantified changes in vegetation structure and species composition across the typical 10-year contract period in undisturbed southern and central Great Plains CRP fields (fig. 2) planted to introduced and native grasses. In addition, we compared changes in vegetation in fields grazed during the emergency release of 1996 by comparing conditions prior to grazing and two and four years post grazing relative to changes in similar fields that were not grazed. Documentation of long-term changes in vegetation structure and composition for fields planted to common grass seed mixtures across a wide range of environmental conditions provides information to improve long-term wildlife habitat potential, guide program administration, and define management practices that yield economic benefits to operators while still meeting wildlife and conservation objectives. Emergency grazing provisions of the CRP are controversial. Although grazing can alter vegetative characteristics and reduce habitat quality in the short-term (Temple and others, 1999), periodic disturbance may be necessary to maintain habitat quality, and more information is needed assessing long-term effects of emergency grazing on vegetative structure and species composition.

Conference Paper↗

Sequence stratigraphy, seismic stratigraphy, and seismic structures of the lower intermediate confining unit and most of the Floridan aquifer system, Broward County, Florida

Deep well injection and disposal of treated wastewater into the highly transmissive saline Boulder Zone in the lower part of the Floridan aquifer system began in 1971. The zone of injection is a highly transmissive hydrogeologic unit, the Boulder Zone, in the lower part of the Floridan aquifer system. Since the 1990s, however, treated wastewater injection into the Boulder Zone in southeastern Florida has been detected at three treated wastewater injection utilities in the brackish upper part of the Floridan aquifer system designated for potential use as drinking water. At a time when usage of the Boulder Zone for treated wastewater disposal is increasing and the utilization of the upper part of the Floridan aquifer system for drinking water is intensifying, there is an urgency to understand the nature of cross-formational fluid flow and identify possible fluid pathways from the lower to upper zones of the Floridan aquifer system. To better understand the hydrogeologic controls on groundwater movement through the Floridan aquifer system in southeastern Florida, the U.S. Geological Survey and the Broward County Environmental Planning and Community Resilience Division conducted a 3.5-year cooperative study from July 2012 to December 2015. The study characterizes the sequence stratigraphy, seismic stratigraphy, and seismic structures of the lower part of the intermediate confining unit aquifer and most of the Floridan aquifer system. Data obtained to meet the study objective include 80 miles of high-resolution, two-dimensional (2D), seismic-reflection profiles acquired from canals in eastern Broward County. These profiles have been used to characterize the sequence stratigraphy, seismic stratigraphy, and seismic structures in a 425-square-mile study area. Horizon mapping of the seismic-reflection profiles and additional data collection from well logs and cores or cuttings from 44 wells were focused on construction of three-dimensional (3D) visualizations of eight sequence stratigraphic cycles that compose the Eocene to Miocene Oldsmar, Avon Park, and Arcadia Formations. The mapping of these seismic-reflection and well data has produced a refined Cenozoic sequence stratigraphic, seismic stratigraphic, and hydrogeologic framework of southeastern Florida. The upward transition from the Oldsmar Formation to the Avon Park Formation and the Arcadia Formation embodies the evolution from (1) a tropical to subtropical, shallow-marine, carbonate platform, represented by the Oldsmar and Avon Park Formations, to (2) a broad, temperate, mixed carbonate-siliciclastic shallow marine shelf, represented by the lower part of the Arcadia Formation, and to (3) a temperate, distally steepened carbonate ramp represented by the upper part of the Arcadia Formation. In the study area, the depositional sequences and seismic sequences have a direct correlation with hydrogeologic units. The approximate upper boundary of four principal permeable units of the Floridan aquifer system (Upper Floridan aquifer, Avon Park permeable zone, uppermost major permeable zone of the Lower Floridan aquifer, and Boulder Zone) have sequence stratigraphic and seismic-reflection signatures that were identified on cross sections, mapped, or both, and therefore the sequence stratigraphy and seismic stratigraphy were used to guide the development of a refined spatial representation of these hydrogeologic units. In all cases, the permeability of the four permeable units is related to stratiform megaporosity generated by ancient dissolution of carbonate rock associated with subaerial exposure and unconformities at the upper surfaces of carbonate depositional cycles of several hierarchical scales ranging from high-frequency cycles to depositional sequences. Additionally, interparticle porosity also contributes substantially to the stratiform permeability in much of the Upper Floridan aquifer. Information from seismic stratigraphy allowed 3D geomodeling of hydrogeologic units—an approach never before applied to this area. Notably, the 3D geomodeling provided 3D visualizations and geocellular models of the depositional sequences, hydrostratigraphy, and structural features. The geocellular data could be used to update the hydrogeologic structure inherent to groundwater flow simulations that are designed to address the sustainability of the water resources of the Floridan aquifer system. Two kinds of pathways that could enable upward cross-formational flow of injected treated wastewater from the Boulder Zone have been identified in the 80 miles of high-resolution seismic data collected for this study: a near-vertical reverse fault and karst collapse structures. The single reverse fault, inferred to be of tectonic origin, is in extreme northeastern Broward County and has an offset of about 19 feet at the level of the Arcadia Formation. Most of the 17 karst collapse structures identified manifest as columniform, vertically stacked sagging seismic reflections that span early Eocene to Miocene age rocks equivalent to much of the Floridan aquifer system and the lower part of the overlying intermediate confining unit. In some cases, the seismic-sag structures extend upward into strata of Pliocene age. The seismic-sag structures are interpreted to have a semicircular shape in plan view on the basis of comparison to (1) other seismic-sag structures in southeastern Florida mapped with two 2D seismic cross lines or 3D data, (2) comparison to these structures located in other carbonate provinces, and (3) plausible extensional ring faults detected with multi-attribute analysis. The seismic-sag structures in the study area have heights as great as 2,500 vertical feet, though importantly, one spans about 7,800 feet. Both multi-attribute analysis and visual detection of offset of seismic reflections within the seismic-sag structures indicate faults and fractures are associated with many of the structures. Multi-attribute analysis highlighting chimney fluid pathways also indicates that the seismic-sag structures have a high probability for potential vertical cross-formational fluid flow along the faulted and fractured structures. A collapse of the seismic-sag structures within a deep burial setting evokes an origin related to hypogenic karst processes by ascending flow of subsurface fluids. In addition, paleo-epigenic karst related to major regional subaerial unconformities within the Florida Platform generated collapse structures (paleo-sinkholes) that are much smaller in scale than the cross-formational seismic-sag structures.

Florida↗

Hydrologic conditions near Glendo, Platte County, Wyoming

The Glendo area of Platte and Carbon Counties, Wyo., about 250 square miles in extent, is in the Great Plains physiographic province. It is bordered on the west by the Laramie Range and on the east by the Hartville uplift. The North Platte River and Horseshoe and Middle Bear Creeks are the principal streams that drain the area. Gentle to steep hills, which lie between 4,450 and 6,360 feet above sea level, characterize the topography. Approximately 7,600 acres of land is cultivated in the Horseshoe Creek valley and 1,000 or more acres in the Cassa Flats of the North Platte River and Middle Bear Creek valleys. The average annual precipitation of 13.15 inches and the streamflow diverted for irrigation from Horseshoe Creek and the North Platte River are usually inadequate to sustain crops during the entire growing season. Sedimentary rocks, which underlie about 99 percent of the Glendo area, range in age from Cambrian(?) to Recent and in thickness from about 3,000 to 4,700 feet. Beds of Paleozoic and Mesozoic age dip steeply away from the Laramie Range and the Hartville uplift to form a large syncline, which is interrupted by the Elkhorn anticline in the central part of the area. Beds of Tertiary and Quaternary age that were deposited over the older structural features and later were partly removed by erosion have dips of less than 6 ? . The 'Converse sand' of local usage at the top of the Hartville Formation of Mississippian(7), Pennsylvanian, and Permian age, the White River Formation of Oligocene age, and the flood-plain deposits of Recent .age are the most important aquifers in the Glendo area. The Hartville Formation consists predominantly of hard limestone and dolomite and of lesser amounts of sandstone and shale ; its thickness ranges from 850 to 1,050 feet throughout most of the area. The 'Converse sand' is an artesian aquifer consisting of fine- to medium-grained porous sandstone having an average thickness of about 80 feet. Recharge to the Hartville Formation is mainly from seepage of surface water from Glendo Reservoir and Spring Creek; ground water is discharged from the formation to the overlying White River Formation and the alluvium in the North Platte River valley near Cassa and to four wells in the Horseshoe Creek valley. Flowing wells yielding from a few gallons per minute to 175 gpm (gallons per minute) or more from the 'Converse sand' can probably be located in an area from ? mile to 1? miles wide and about 4? miles long in the lower Horseshoe Creek valley. The depth to the 'Converse sand' in this area depends upon the topographic relief and distance from the outcrop and ranges from 250 to about 1,000 feet. The discharge induced by pumping a well in the aquifer in the 'Converse sand' would probably amount to about 2 gpm per foot of drawdown. Values of 2,000, 2,100, and 10,300 gpd (gallons per day) per ft for the coefficient of transmissibility of the 'Converse sand' were obtained from aquifer tests at three wells. The chemical analyses of samples from the Hartville Formation ('Converse. sand' included) indicate that the water in the formation is of fairly good quality and adequate for domestic, stock, and irrigation uses, although the fluoride content is low and the water is hard. The White River Formation is composed of as much as 575 feet of fractured siltstone and claystone, and the flood-plain deposits include up to 65 feet of silt, sand, and gravel. Precipitation is the main type of recharge to the rocks of Tertiary age. Recharge to the alluvium in the valleys of Horseshoe Creek and the North Platte River occurs mainly by seepage of ground water from. underlying beds, by infiltration of irrigation water, and by infiltration of streamflow as bank storage. Ground water is discharged naturally from the area by seepage to streams, by underflow, and by evapotranspiration and artificially by wells. In 1961, the total discharge from 38 wells in the White River and Arikaree Formations and 2

Water Supply Paper↗

Terrestrial forest management plan for Palmyra Atoll

This 'Terrestrial Forest Management Plan for Palmyra Atoll' was developed by the U.S. Geological Survey (USGS) for The Nature Conservancy (TNC) Palmyra Program to refine and expand goals and objectives developed through the Conservation Action Plan process. It is one in a series of adaptive management plans designed to achieve TNC's mission toward the protection and enhancement of native wildlife and habitat. The 'Terrestrial Forest Management Plan for Palmyra Atoll' focuses on ecosystem integrity and specifically identifies and addresses issues related to assessing the status and distribution of resources, as well as the pressures acting upon them, most specifically nonnative and potentially invasive species. The plan, which presents strategies for increasing ecosystem integrity, provides a framework to implement and track the progress of conservation and restoration goals related to terrestrial resources on Palmyra Atoll. The report in its present form is intended to be an overview of what is known about historical and current forest resources; it is not an exhaustive review of all available literature relevant to forest management but an attempt to assemble as much information specific to Palmyra Atoll as possible. Palmyra Atoll is one of the Northern Line Islands in the Pacific Ocean southwest of the Hawai`ian Islands. It consists of many heavily vegetated islets arranged in a horseshoe pattern around four lagoons and surrounded by a coral reef. The terrestrial ecosystem consists of three primary native vegetation types: Pisonia grandis forest, coastal strand forest, and grassland. Among these vegetation types, the health and extent of Pisonia grandis forest is of particular concern. Overall, the three vegetation types support 25 native plant species (two of which may be extirpated), 14 species of sea birds, six shore birds, at least one native reptile, at least seven native insects, and six native land crabs. Green and hawksbill turtles forage at Palmyra Atoll, and though rarely documented, beach nesting could be affected by terrestrial management actions. There are various nonnative or invasive species throughout the terrestrial ecosystem. The most notable examples of terrestrial invasive species include coconut palms (Cocos nucifera) and black rats (Rattus rattus). Although it is unclear whether they are nonnative, coconut palms are currently the most dominant plant across Palmyra Atoll. They compete with native plant species for space and resources and are potentially detrimental to sea birds dependent on native vegetation for roosting and nesting habitat. This competition in turn impacts nutrient resource availability, thereby reshaping energy flow in the ecosystem. Black rats are known to prey on ground-nesting sea birds and are likely responsible for the lack of burrowing sea bird reproduction at Palmyra Atoll. In addition, they may be facilitating the invasion of other nonnative species and negatively impacting other native fauna. Although the extent and impacts of these and other nonnative and (or) invasive species are not fully understood, the extent and impacts are clearly a threat to the native species and one of the most urgent threats to the overall ecosystem integrity of Palmyra Atoll. This 'Terrestrial Forest Management Plan for Palmyra Atoll' addresses issues related to invasive species and other problems. Priority goals are established as are associated objectives and strategies. The overarching goal is to perpetuate and where possible restore terrestrial ecosystem integrity through the following techniques: 1. Habitat management: Maintain and enhance habitat to the extent possible to sustain thriving Pisonia grandis forest, coastal strand forest, endemic grassland, self-sustaining populations of sea birds, shore birds, coconut crabs, native lizards, and native insects. 2. Monitoring and assessment: Acquire information on distribution and abundance as needed for conservation of each resour

Open-File Report↗

Hydrology and geomorphology of the Taiya River near the West Creek Tributary, southeast Alaska

The Taiya River flows through the Chilkoot Trail Unit of Klondike Gold Rush National Historical Park in southeast Alaska, which was founded to preserve cultural and historical resources and further understanding of natural processes active in the surrounding coastal-to-subarctic basin. Riverine processes exert an important influence on ecologically important boreal toad ( Anaxryus boreas boreas ), salmon [chum salmon ( Oncorhynchus keta ), pink salmon ( O. gorbushca ), and coho salmon ( O. kisutch )], and eulachon ( Thaleichthys pacificus ) habitats, erosion of the historic ghost town of Dyea and other cultural and historical artifacts, and recreational opportunities in the lower 7.5 kilometers (km) of the Taiya River valley bottom. Recurrent consideration of hydroelectric development in West Creek upstream of the park since the 1980s has included proposals for damming and diverting West Creek, which could alter the delivery of water and sediment to this section of the Taiya River. To improve understanding of the hydrologic dependence of park resources for the purposes of guiding effective monitoring and conservation, this study, conducted by the U.S. Geological Survey in cooperation with the National Park Service, used a review of hydrologic data, collection of discrete suspended sediment data, geomorphic mapping, and analysis of historical aerial and ground photographs in a reconnaissance of formative geomorphic processes and hydrologic conditions in the lower 7.5 km of the Taiya River valley bottom. Streamflow and suspended sediment data collected at the U.S. Geological Survey streamgages on the Taiya River and West Creek, combined with historical data, document conditions consistent with streams draining strongly glacierized basins in Alaska. Suspended sediment concentrations from samples collected concurrently over six varying flow levels during 2017–18 ranged from 6 to 284 milligrams per liter (mg/L) for the Taiya River and 13 to 162 mg/L for West Creek, which are similar to or slightly higher than historical values. For the common period of record (1970–77), correlation of daily mean discharge between the two streams was strongest (Pearson’s r = 0.97) during the prolonged May–October high-flow season and weakest ( r = 0.90) during the November–April low-flow season, when West Creek daily mean discharge was proportionally higher. For the Taiya River, streamflow data compared between the available periods of record (1970–77 and 2004–17) showed no decadal-scale patterns in mean annual discharge but did show a shift toward an earlier spring snowmelt pulse. Notable flooding in the Taiya River Basin includes glacial lake outburst floods from the Nourse River valley prior to and during the 1897–98 Gold Rush, a 2002 glacial lake outburst flood from the West Creek valley, and a 1967 rainfall-generated flood. Geomorphic mapping identified four categories of surfaces in the valley bottom—active main stem, abandoned main stem, alluvial fans, and emergent tidal surfaces. Using the maps, main-stem surfaces were subdivided into age categories to identify channel migration patterns from prior to 1940s to 2018. The valley bottom is dominated by active or abandoned channels of the Taiya River except at the extensive low-angle West Creek fan. The active main stem presently supports a mostly single-thread channel with bars and a few sloughs, but the channel actively moved and sometimes was braided within multiple, wider unvegetated corridors in 1894 and earlier. An inventory of 29 off-main-stem channels identified for the study indicates that abandoned main stem channels provide local topographic lows that can intercept groundwater or sustain tributary flow, facilitating the formation of most nonestuarine wetlands in the valley and sustaining important boreal toad breeding habitat. Within the active main stem corridor, the channel has episodically built and reworked meanders and bars, eroding more than one-half of the historic Dyea townsite, in response to glacially controlled delivery of water and sediment, flooding, inputs from West Creek, local features including large woody debris and beaver dams, and rapid uplift from isostatic rebound. West Creek has constructed a large, persistent fan, provoked kilometer-scale Taiya River channel change near the confluence, constructively added to high-season streamflow that affects Taiya River channel migration capacity, disproportionately contributed early-season streamflow, and possibly contributed to groundwater levels in the valley bottom. The progressive narrowing and stability of the main stem corridor, possibly a result of reduction in the magnitude or frequency of glacial lake outburst floods or glacial sediment delivery to streams, indicates less active future reworking of abandoned main-stem surfaces or regeneration of wetland features. The fluvial history of the Taiya River valley bottom collectively indicates continued channel change within a limited corridor, relative stability in wetland locations but uncertainty in stability of groundwater supply to them, and channel incision and extension in response to uplift.

Alaska↗

Relation between ground water and surface water in Brandywine Creek basin, Pennsylvania

The relation between ground water and surface water was studied in Brandywine Creek basin, an area of 287 square miles in the Piedmont physiographic province in southeastern Pennsylvania. Most of the basin is underlain by crystalline rocks that yield only small to moderate supplies of water to wells, but the creek has an unusually well-sustained base flow. Streamflow records for the Chadds Ford, Pa., gaging station were analyzed; base flow recession curves and hydrographs of base flow were defined for the calendar years 1928-31 and 1952-53. Water budgets calculated for these two periods indicate that about two-thirds of the runoff of Brandywine Creek is base flow--a significantly higher proportion of base flow than in streams draining most other types of consolidated rocks in the region and almost as high as in streams in sandy parts of the Coastal Plain province in New Jersey and Delaware. Ground-water levels in 16 observation wells were compared with the base flow of the creek for 1952-53. The wells are assumed to provide a reasonably good sample of average fluctuations of the water table and its depth below the land surface. Three of the wells having the most suitable records were selected as index wells to use in a more detailed analysis. A direct, linear relation between the monthly average ground-water stage in the index wells and the base flow of the creek in winter months was found. The average ground-water discharge in the basin for 1952-53 was 489 cfs (316 mgd), of which slightly less than one-fourth was estimated to be loss by evapotranspiration. However, the estimated evapotranspiration from ground water, and consequently the estimated total ground-water discharge, may be somewhat high. The average gravity yield (short-term coefficient of storage) of the zone of water-table fluctuation was calculated by two methods. The first method, based on the ratio of change in ground-water storage as calculated from a witner base-flow recession curve is seasonal change in ground-water stage in the observation wells, gave values of about 7 percent using 16 wells) and 7 1/2 percent (using 3 index wells). The second method, in which the change in ground water storage is based on a hypothetical base-flow recession curve (derived from the observed linear relation between ground-water stage in the index wells and base flow), gave a value of about 10 1/2 percent. The most probable value of gravity yield is between 7 1/2 and 10 percent, but this estimate may require modification when more information on the average magnitude of water-table fluctuation and the sources of base flow of the creek become available. Rough estimates were made of the average coefficient of transmissibility of the rocks in the basin by use of the estimated total ground-water discharge for the period 1952-53, approximate values of length of discharge areas, and average water-table gradients adjacent to the discharge areas. The estimated average coefficient of transmissibility for 1952-53 is roughly 1,000 gpd per foot. The transmissibility is variable, decreasing with decreasing ground-water stage. The seeming inconsistency between the small to moderate ground-water yield to wells and the high yield to streams is explained in terms of the deep permeable soils, the relatively high gravity yield of the zone of water-table fluctuation, the steep water-table gradients toward the streams, the relatively low transmissibility of the rocks, and the rapid decreases in gravity yield below the lower limit of water-table fluctuation. It is concluded that no simple relation exists between the amount of natural ground-water discharge in an area and all the proportion of this discharge that can be diverted to wells.

Professional Paper↗

Simulation of hydrodynamics, water quality, and lake sturgeon habitat volumes in Lake St. Croix, Wisconsin and Minnesota, 2013

Lake St. Croix is a naturally impounded, riverine lake that makes up the last 40 kilometers of the St. Croix River. Substantial land-use changes during the past 150 years, including increased agriculture and urban development, have reduced Lake St. Croix water-quality and increased nutrient loads delivered to Lake St. Croix. A recent (2012–13) total maximum daily load phosphorus-reduction plan set the goal to reduce total phosphorus loads to Lake St. Croix by 20 percent by 2020 and reduce Lake St. Croix algal bloom frequencies. The U.S. Geological Survey, in cooperation with the National Park Service, developed a two-dimensional, carbon-based, laterally averaged, hydrodynamic and water-quality model, CE–QUAL–W2, that addresses the interaction between nutrient cycling, primary production, and trophic dynamics to predict responses in the distribution of water temperature, oxygen, and chlorophyll a. Distribution is evaluated in the context of habitat for lake sturgeon, including a combination of temperature and dissolved oxygen conditions termed oxy-thermal habitat. The Lake St. Croix CE–QUAL–W2 model successfully reproduced temperature and dissolved oxygen in the lake longitudinally (from upstream to downstream), vertically, and temporally over the seasons. The simulated water temperature profiles closely matched the measured water temperature profiles throughout the year, including the prediction of thermocline transition depths (often within 1 meter), the absolute temperature of the thermocline transitions (often within 1.0 degree Celsius), and profiles without a strong thermocline transition. Simulated dissolved oxygen profiles matched the trajectories of the measured dissolved oxygen concentrations at multiple depths over time, and the simulated concentrations matched the depth and slope of the measured concentrations. Additionally, trends in the measured water-quality data were captured by the model simulation, gaining some potential insights into the underlying mechanisms of critical Lake St. Croix metabolic processes. The CE–QUAL–W2 model tracked nitrate plus nitrite, total nitrogen, and total phosphorus throughout the year. Inflow nutrient contributions (loads), largely dominated by upstream St. Croix River loads, were the most important controls on Lake St. Croix water quality. Close to 60 percent of total phosphorus to the lake was from phosphorus derived from organic matter, and about 89 percent of phosphorus to Lake St. Croix was delivered by St. Croix River inflows. The Lake St. Croix CE–QUAL–W2 model offered potential mechanisms for the effect of external and internal loadings on the biotic response regarding the modeled algal community types of diatoms, green algae, and blue-green algae. The model also suggested the seasonal dominance of blue-green algae in all four pools of the lake. A sensitivity analysis was completed to test the total maximum daily load phosphorus-reduction scenario responses of total phosphorus and chlorophyll a. The modeling indicates that phosphorus reductions would result in similar Lake St. Croix reduced concentrations, although chlorophyll a concentrations did not decrease in the same proportional amounts as the total phosphorus concentrations had decreased. The smaller than expected reduction in algal growth rates highlighted that although inflow phosphorus loads are important, other constituents also can affect the algal response of the lake, such as changes in light penetration and the breakdown of organic matter releasing nutrients. The available habitat suitable for lake sturgeon was evaluated using the modeling results to determine the total volume of good-growth habitat, optimal growth habitat, and lethal temperature habitat. Overall, with the calibrated model, the fish habitat volume in general contained a large proportion of good-growth habitat and a sustained period of optimal growth habitat in the summer. Only brief periods of lethal oxy-thermal habitat were present in Lake St. Croix during the model simulation.

Minnesota, Wisconsin↗

Environmental Setting and Effects on Water Quality in the Great and Little Miami River Basins, Ohio and Indiana

The Great and Little Miami River Basins drain approximately 7,354 square miles in southwestern Ohio and southeastern Indiana and are included in the more than 50 major river basins and aquifer systems selected for water-quality assessment as part of the U.S. Geological Survey's National Water-Quality Assessment Program. Principal streams include the Great and Little Miami Rivers in Ohio and the Whitewater River in Indiana. The Great and Little Miami River Basins are almost entirely within the Till Plains section of the Central Lowland physiographic province and have a humid continental climate, characterized by well-defined summer and winter seasons. With the exception of a few areas near the Ohio River, Pleistocene glacial deposits, which are predominantly till, overlie lower Paleozoic limestone, dolomite, and shale bedrock. The principal aquifer is a complex buried-valley system of sand and gravel aquifers capable of supporting sustained well yields exceeding 1,000 gallons per minute. Designated by the U.S. Environmental Protection Agency as a sole-source aquifer, the Buried-Valley Aquifer System is the principal source of drinking water for 1.6 million people in the basins and is the dominant source of water for southwestern Ohio. Water use in the Great and Little Miami River Basins averaged 745 million gallons per day in 1995. Of this amount, 48 percent was supplied by surface water (including the Ohio River) and 52 percent was supplied by ground water. Land-use and waste-management practices influence the quality of water found in streams and aquifers in the Great and Little Miami River Basins. Land use is approximately 79 percent agriculture, 13 percent urban (residential, industrial, and commercial), and 7 percent forest. An estimated 2.8 million people live in the Great and Little Miami River Basins; major urban areas include Cincinnati and Dayton, Ohio. Fertilizers and pesticides associated with agricultural activity, discharges from municipal and industrial wastewater-treatment and thermoelectric plants, urban runoff, and disposal of solid and hazardous wastes contribute contaminants to surface water and ground water throughout the study area. Surface water and ground water in the Great and Little Miami River Basins are classified as very hard, calcium-magnesiumbicarbonate waters. The major-ion composition and hardness of surface water and ground water reflect extensive contact with the carbonate-rich soils, glacial sediments, and limestone or dolomite bedrock. Dieldrin, endrin, endosulfan II, and lindane are the most commonly reported organochlorine pesticides in streams draining the Great and Little Miami River Basins. Peak concentrations of the herbicides atrazine and metolachlor in streams commonly are associated with post-application runoff events. Nitrate concentrations in surface water average 3 to 4 mg/L (milligrams per liter) in the larger streams and also show strong seasonal variations related to application periods and runoff events. Ambient iron concentrations in ground water pumped from aquifers in the Great and Little Miami River Basins often exceed the U.S. Environmental Protection Agency Secondary Maximum Contaminant Level (300 micrograms per liter). Chloride concentrations are below aesthetic drinking-water guidelines (250 mg/L), except in ground water pumped from low-yielding Ordovician shale; chloride concentrations in sodium-chloriderich ground water pumped from the shale bedrock can exceed 1,000 mg/L. Some of the highest average nitrate concentrations in ground water in Ohio and Indiana are found in wells completed in the buried-valley aquifer; these concentrations typically are found in those parts of the sand and gravel aquifer that are not overlain by clay-rich till. Atrazine was the most commonly detected herbicide in private wells. Concentrations of volatile organic compounds in ground water generally were below Federal drinking-water standards, except near areas of known or suspected contamination. Evaluation of fish and macroinvertebrate community performance in streams and rivers draining the Great and Little Miami River Basins indicates that most streams meet basic aquatic-life-use criteria set by the Ohio Environmental Protection Agency for warmwater habitat. Stream reaches whose biological community performance meet aquatic-lifeuse criteria defined for exceptional warmwater habitat are found in Twin Creek, the Upper Great Miami River, the Little Miami River, and the Whitewater River Basins. Other streams have exhibited significant improvements in biological community performance (and water quality)'that are attributed primarily to reduced pollutant loadings from wastewater-treatment plants upgraded since 1972. Four hydrogeomorphic regions were delineated in the Great and Little Miami River Basins based on distinct and relatively homogeneous natural characteristics. Primary features used to delineate the hydrogeomorphic regions include bedrock geology, surficial geology, physiography, hydrology, soil types, and vegetation. These four regions Till Plains, Drift Plains/Unglaciated, Interlobate, and Fluvial are used in the Great and Little Miami River Basins study to assess the influence of natural features of the environmental setting on surface- and ground-water quality.

Indiana, Ohio↗

Simulation of Ground-Water Flow and Effects of Ground-Water Irrigation on Base Flow in the Elkhorn and Loup River Basins, Nebraska

Irrigated agriculture is vital to the livelihood of communities in the Elkhorn and Loup River Basins in Nebraska, and ground water is used to irrigate most of the cropland. Concerns about the sustainability of ground-water and surface-water resources have prompted State and regional agencies to evaluate the cumulative effects of ground-water irrigation in this area. To facilitate understanding of the effects of ground-water irrigation, a numerical computer model was developed to simulate ground-water flow and assess the effects of ground-water irrigation (including ground-water withdrawals, hereinafter referred to as pumpage, and enhanced recharge) on stream base flow. The study area covers approximately 30,800 square miles, and includes the Elkhorn River Basin upstream from Norfolk, Nebraska, and the Loup River Basin upstream from Columbus, Nebraska. The water-table aquifer consists of Quaternary-age sands and gravels and Tertiary-age silts, sands, and gravels. The simulation was constructed using one layer with 2-mile by 2-mile cell size. Simulations were constructed to represent the ground-water system before 1940 and from 1940 through 2005, and to simulate hypothetical conditions from 2006 through 2045 or 2055. The first simulation represents steady-state conditions of the system before anthropogenic effects, and then simulates the effects of early surface-water development activities and recharge of water leaking from canals during 1895 to 1940. The first simulation ends at 1940 because before that time, very little pumpage for irrigation occurred, but after that time it became increasingly commonplace. The pre-1940 simulation was calibrated against measured water levels and estimated long-term base flow, and the 1940 through 2005 simulation was calibrated against measured water-level changes and estimated long-term base flow. The calibrated 1940 through 2005 simulation was used as the basis for analyzing hypothetical scenarios to evaluate the effects of ground-water irrigation on stream base flow for 1940 through 2005 and for 2006 through 2045. Simulated base flows were compared for scenarios that alternately did or did not include a representation of the effects of ground-water irrigation. The difference between simulated base flows for the two scenarios represents the predicted effects of ground-water irrigation on base flow. Comparison of base flows between simulations with ground-water irrigation and no ground-water irrigation indicated that ground-water irrigation has cumulatively reduced streamflows from 1940 through 2005 by 888,000 acre-feet in the Elkhorn River Basin and by 2,273,000 acre-feet in the Loup River Basin. Generally, predicted cumulative effects of ground-water irrigation on base flow were 5 to 10 times larger from 2006 through 2045 than from 1940 through 2005, and were 7,678,000 acre-feet for the Elkhorn River Basin and 14,784,000 acre-feet for the Loup River Basin. The calibrated simulation also was used to estimate base-flow depletion as a percentage of pumping volumes for a 50-year future time period, because base-flow depletion percentages are used to guide the placement of management boundaries in Nebraska. Mapped results of the base-flow depletion analysis conducted for most of the interior of the study area indicated that pumpage of one additional theoretical well simulated for a future 50-year period generally would result in more than 80 percent depletion when it was located close to the stream, except in areas where depletion was partly offset by reduced ground-water discharge to evapotranspiration in wetland areas. In many areas, depletion for the 50-year future period composed greater than 10 percent of the pumped water volume for theoretical wells placed less than 7 or 8 miles from the stream, though considerable variations existed because of the heterogeneity of the natural system represented in the simulation. For a few streams, predicted future simulated base flows dec

Scientific Investigations Report↗

Hydrogeology and hydrology of the Punta Cabullones wetland area, Ponce, southern Puerto Rico, 2007-08

The U.S. Geological Survey, in cooperation with the Municipio Autónomo de Ponce and the Puerto Rico Department of Natural and Environmental Resources, conducted a study of the hydrogeology and hydrology of the Punta Cabullones area in Ponce, southern Puerto Rico. (Punta Cabullones is also referred to as Punta Cabullón.) The Punta Cabullones area is about 9 square miles and is an ecological system made up of a wetland, tidal flats, saltflats, mangrove forests, and a small fringing reef located a short distance offshore. The swales or depressions between successive beach ridges became development avenues for saline to hypersaline wetlands. The Punta Cabullones area was designated by the U.S. Fish and Wildlife Service as a coastal barrier in the 1980s because of its capacity to act as a buffer zone to ameliorate the impacts of natural phenomenon such as storm surges. Since 2003, Punta Cabullones has been set aside for preservation as part of the mitigation effort mandated by Federal and State laws to compensate for the potential environmental effects that might be caused by the construction of the Las Américas Transshipment Port. Total rainfall measured during 2008 within the Punta Cabullones area was 36 inches, which is slightly greater than the long-term annual average of 32 inches for the coastal plain near Ponce. Two evapotranspiration estimates, 29 and 37 inches, were obtained for the subarea of the Punta Cabullones area that is underlain by fan-delta and alluvial deposits by using two variants of the Penman semi-empirical equation. The long-term water stage and chemical character of the wetland in Punta Cabullones are highly dependent on the seasonal and annual variations of both rainfall and sea-wave activity. Also, unseasonal short-term above-normal rainfall and sea-wave events resulting from passing storms may induce substantial changes in the water stage and the chemical character of the wetland. In general, tidal fluctuations exert a minor role in modifying the water quality and stage of the wetland in Punta Cabullones. The role of the tidal fluctuations becomes important during those times when the outlets/inlets to the sea are not blocked by a sand bar and is allowed to freely flow into the wetland interior. The salinity of the wetland varies from brackish to hypersaline. The hypersaline conditions, including the occurrence of saltflats, within the Punta Cabullones wetland area result from a high evapotranspiration rate. The hypersaline conditions are further enhanced by a sand bar that blocks the inlet/outlet of the wetland’s easternmost channel, particularly during the dry season. Groundwater in Punta Cabullones mostly is present within beds of silisiclastic sand and gravel. During the study period, the depth to groundwater did not exceed 4 feet below land surface. The movement and direction of the groundwater flow in Punta Cabullones are driven by density variations that in turn result from the wide range of salinities in the groundwater. The salinity of the groundwater decreases within the first 60 to 100 feet of depth and decreases outward from a mound of hypersaline groundwater centered on piezometer nest PN2. The main groundwater types within the Punta Cabullones area vary from calcium-bicarbonate type in the northernmost part of the study area to a predominantly sodium-potassium-chloride groundwater type southward. According to stable-isotope data, groundwater within the study area is both modern meteoric water and seawater highly affected by evaporation. The chemical and stable-isotopic character of local groundwater is highly influenced by evapotranspiration because of its shallow depth. Equivalent freshwater heads indicate groundwater moves away from a mound centered on piezometer nest PN2, in a pattern similar to the spatial distribution of groundwater salinity. Vertical groundwater flow occurs in Punta Cabullones due to local differences in density. In the wetland subarea of Punta Cabullones, groundwater and surface water are hydraulically coupled. Locally, surface-hypersaline water sinks into the aquifer, providing recharge and serving as a mechanism to redistribute salt throughout the study area. The evapotranspiration in the wetland subarea is estimated at about 11 million gallons per day (Mgal/d) that is equivalent to about 12,586 acre-feet per year. The balance of evapotranspiration, in excess of the about 0.5 Mgal/d of groundwater flow within the wetland, is supplied by saline to hypersaline surface water that may include seawater and meteoric water highly affected by evaporation with dissolved salts. In one of the extreme scenarios in which no groundwater is intercepted by pumpage at the Restaurada well field, the amount of saline to hypersaline water in the wetland consumed by evapotranspiration is about 10.5 Mgal/d. In the opposite extreme in which the entire regional groundwater flow is intercepted by pumpage in the Restaurada well field, the entire evapotranpiration requirement is met by saline to hypersaline water. Hydrologic, isotopic, and chemical data indicate that all of, or a large portion of, the historical groundwater flow to Punta Cabullones is being captured by the Puerto Rico Aqueducts and Sewer Authority pumpage at the Restaurada well field at a rate of about 2 Mgal/d. As a consequence, seawater intrusion into the aquifer at the Punta Cabullones area seems to be occurring, while the current pumpage at the Restaurada well field is sustained by storage depletion of the aquifer.

Puerto Rico↗