SEARCH · Geology Reports

Results for “Marine Science”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 865 records · Page 48Linked to original sources

USGS2009

Mesohaline submerged aquatic vegetation survey along the U.S. gulf of Mexico coast, 2001 and 2002: A salinity gradient approach

Distribution of marine submerged aquatic vegetation (SAV; i.e., seagrass) in the northern Gulf of Mexico coast has been documented, but there are nonmarine submersed or SAV species occurring in estuarine salinities that have not been extensively reported. We sampled 276 SAV beds along the gulf coast in Florida, Alabama, Mississippi, Louisiana, and Texas in 2001 and 2002 in oligohaline to polyhaline (0 to 36 parts per thousand) waters to determine estuarine SAV species distribution and identify mesohaline SAV communities. A total of 20 SAV and algal species was identified and habitat characteristics such as salinity, water depth, pH, conductivity, turbidity, dissolved oxygen, and sediment composition were collected. Fourteen SAV species occurred two or more times in our samples. The most frequently occurring species was Ruppia maritima L. (n = 148), occurring in over half of SAV beds sampled. Eleocharis sp. (n = 47), characterized with an emergent rather than submerged growth form, was a common genus in the SAV beds sampled. A common marine species was Halodule wrightii Asch. (n = 36). Nonindigenous species Myriophyllum spicatum L. (n = 31) and Hydrilla verticillata (L. f.) Royle (n = 6) were present only in oligohaline water. Analyzing species occurrence and environmental characteristics using canonical correspondence and two-way indicator species analysis, we identify five species assemblages distinguished primarily by salinity and depth. Our survey increases awareness of nonmarine SAV as a natural resource in the gulf, and provides baseline data for future research.

Alabama, Florida, Louisiana, Mississippi, Texas↗

USGS1991

Pliocene-Pleistocene coastal events and history along the western margin of Australia

Coastal deposits along the western coastal margin of Australia, a region of relative tectonic stability, record Plio-Pleistocene events and processes affecting the inner shelf and adjacent hinterland. Tectonic deformation of these deposits is more apparent in the Carnarvon Basin, and rather less so in the Perth Basin. The most complete record comes from the Perth Basin, where units of Pliocene and Pleistocene ages are well represented. In the Perth Basin, the predominantly siliciclastic Yoganup Formation, Ascot Formation and Bassendean Sand represent a complex of shoreline, inner shelf and regressive-dune facies equivalents, the deposition of which began at an undetermined stage of the Pliocene, through to the Early Pleistocene. The deposition of this sequence closed with a major regression and significant faunal extinction. Bioclastic carbonates characterize the Middle and Late Pleistocene of the Perth and Carnarvon basins. Fossil assemblages include a distinct subtropical element, unknown from the Ascot Formation and suggesting a strengthening of the Leeuwin Current. The estuarine arcoid bivalve Anadara trapezia characterizes assemblages of Oxygen Isotope Stages 5 and 7 in the Perth and Carnarvon basins, where it is now extinct. Deposits of Substage 5e (Perth Basin) also record a southerly expansion of warm-water corals and other fauna consistent with shelf temperatures warmer than present. New uranium-series ages on corals from marine sequences of the Tantabiddi Member, of the Bundera Calcarenite of the western Cape Range are consistent with the ‘double peak’ hypothesis for levels of Substage 5e but the evidence remains less than conclusive. Initial uranium-series dates from the Bibra and Dampier formations of Shark Bay indicate that both derive from the Late Pleistocene. These numerical ages contradict previous interpretations of relative ages obtained from field studies. The age relationship of the units requires further investigation.

Quaternary Science Reviews↗

USGS2005

Interpretation of the Last Chance thrust, Death Valley region, California, as an Early Permian décollement in a previously undeformed shale basin

The Last Chance thrust, discontinuously exposed over an area of at least 2500 km 2 near the south end of the Cordilleran foreland thrust belt in the Death Valley region of east-central California, is controversial because of its poorly constrained age and its uncertain original geometry and extent. We interpret this thrust to be Early Permian in age, to extend throughout a sedimentary basin in which deep-water Mississippian shale overlain by Pennsylvanian and earliest Permian limestone turbidites accumulated, to represent about 30 km of eastward displacement, and to be related to convergence on a northeast-trending segment of the Early Permian continental margin. Last Chance deformation occurred between the times of the Antler and Sonoma orogenies of Late Devonian–Early Mississippian and Late Permian ages, respectively, and followed Early to Middle Pennsylvanian truncation of the continental margin by transform faulting. In the western part of the Mississippian shale basin in east-central California, the originally recognized exposures of the Last Chance thrust show Neoproterozoic and early Paleozoic strata above lower-plate Mississippian shale. Farther east, faults subparallel to bedding above, below, and within the Mississippian shale are interpreted to mark the thrust zone and to represent a regional décollement. At the eastern margin of the basin, upper-plate thrust slices of deep-water, late Paleozoic strata are interpreted to have piled up against the margin of the Mississippian carbonate shelf to form a large antiformal stack above the Lee Flat thrust, which we regard as the easternmost exposure of the Last Chance thrust. Thrust loading depressed the western part of the shelf, creating a new sedimentary basin in which about 3.5 km of younger Early Permian deep-water strata were deposited against the antiformal stack. Later, probably in the Late Permian, other thrusts, including the Inyo Crest thrust, which was subsequently overlapped by Early to Middle(?) Triassic marine strata, cut across the Last Chance thrust. We interpret the Last Chance thrust as similar in many ways to Appalachian-type décollements in which the zone of thrusting is localized along a shale interval. The Last Chance thrust, however, has been dismembered during later geologic events so that its original geometry has been obscured. Our model may have unrecognized analogs in other structurally complex shale basins in which the initial deformation was along a major shale unit.

Earth-Science Reviews↗

USGS2020

Late Quaternary evolution and stratigraphic framework influence on coastal systems along the north-central Gulf of Mexico, USA

Coastal systems in the Gulf of Mexico are threatened by reduced sediment supply, storm impacts and relative sea-level rise (RSLR). The geologic record provides insight into geomorphic evolution thresholds to these forcing mechanisms to help predict future barrier evolution in response to climate change. This study synthesizes ∼2100 km of geophysical data, 700 + sediment cores, and 62 radiocarbon dates to regionally map two lowstand sequence boundaries, multiple ravinement surfaces and fourteen depositional facies demonstrating stratigraphic and antecedent topographic influences on coastal evolution. The Mississippi-Alabama (MSAL) barriers are anchored by a marine isotope stage (MIS) 5e section of Dauphin Island coupled with an MIS 2 surface gradient change. Sand for the modern MSAL barriers were largely sourced through Holocene transgressive ravinement of relict valley fill deposits, providing up to 300 × 106 m3 of sand. Mud-filled MIS 2 tributaries correspond to areas of repeated storm breaching or tidal inlets. A Holocene geomorphic evolutionary model was created for Petit Bois and Dauphin Islands, highlighting RSLR rates, changes in sediment supply and the antecedent geologic framework. As the MIS 2 surface was flooded, tidal/wave scour supplied sand to migrating marine shoals. These transgressing shoals converted drowned paleovalleys to estuaries ∼9ka BP. Islands formed in their modern positions ∼6ka BP, when sediment supply was high and RSLR rates were 2 mm/yr. Between ∼4ka-1750 CE, islands prograded from reduced RSLR rates of 1-0.4 mm/yr and sufficient sand supply from alongshore/inner shelf sources. Currently, the islands experience 3.74 mm/yr of RSLR and reduced sediment supply, resulting in barrier degradation.

Alabama, Mississippi↗

USGS1995

Coastal ecosystem decision‐support GIS: Functions and methodology

To solve coastal resource and environmental issues and handle complex spatial data and information effectively and efficiently, a coastal ecosystem decision‐support geographic information system (GIS) is being developed at the Southern Science Center of the U.S. National Biological Service. With three subsystems, natural resource management, environmental impact assessment, and data and information handling, respectively, the multifunctional system is designed to provide decision makers with tools to integrate and organize various environmental data and information for analytical modeling, spatial query, and graphic visualization. The multiple integration approach was employed in this system's development based on a commercial GIS, which includes subsystems integration, environmental data integration, decision‐support functions integration, and analytical model integration.

Marine Geodesy↗

USGS2009

GIS applications for military operations in coastal zones

In order to successfully support current and future US military operations in coastal zones, geospatial information must be rapidly integrated and analyzed to meet ongoing force structure evolution and new mission directives. Coastal zones in a military-operational environment are complex regions that include sea, land and air features that demand high-volume databases of extreme detail within relatively narrow geographic corridors. Static products in the form of analog maps at varying scales traditionally have been used by military commanders and their operational planners. The rapidly changing battlefield of 21st Century warfare, however, demands dynamic mapping solutions. Commercial geographic information system (GIS) software for military-specific applications is now being developed and employed with digital databases to provide customized digital maps of variable scale, content and symbolization tailored to unique demands of military units. Research conducted by the Center for Remote Sensing and Mapping Science at the University of Georgia demonstrated the utility of GIS-based analysis and digital map creation when developing large-scale (1:10,000) products from littoral warfare databases. The methodology employed-selection of data sources (including high resolution commercial images and Lidar), establishment of analysis/modeling parameters, conduct of vehicle mobility analysis, development of models and generation of products (such as a continuous sea-land DEM and geo-visualization of changing shorelines with tidal levels)-is discussed. Based on observations and identified needs from the National Geospatial-Intelligence Agency, formerly the National Imagery and Mapping Agency, and the Department of Defense, prototype GIS models for military operations in sea, land and air environments were created from multiple data sets of a study area at US Marine Corps Base Camp Lejeune, North Carolina. Results of these models, along with methodologies for developing large-scale littoral warfare databases, aid the National Geospatial-Intelligence Agency in meeting littoral warfare analysis, modeling and map generation requirements for US military organizations. ?? 2008 International Society for Photogrammetry and Remote Sensing, Inc. (ISPRS).

ISPRS Journal of Photogrammetry and Remote Sensing↗

USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

Atlantic Coast↗

USGS1991

Stratigraphy and paleoceanography of Pliocene deposits of Karaginsky Island, eastern Kamchatka, U.S.S.R.

The lithology and paleontology of Pliocene deposits from Karaginsky Island, off eastern Kamchatka Peninsula, U.S.S.R., are described in order to provide a paleoceanographic reconstruction of this region of the eastern North Pacific Ocean. The stratigraphic sequence is divided into three suites — the Limimtevayamian, the Ust-Limimtevayamian, and the Tusatuvayamian, which correspond to three standard Pacific diatom zones — the Thalassiosira oestrupii, Neodenticula koizumi-N. kamtschatica , and N. koizumi . The entire sequence is further subdivided into six members and 18 distinct beds on the basis of molluscan assemblages and three members and seven beds on the basis of benthic foraminiferal assemblages. Marine ostracodes are described from the Limimtevayamian suite. The marine invertebrate assemblages from Karaginsky Island provide evidence that: (1) ocean water temperatures were warmer than today about 4 Ma and again about 3.5-3.0 Ma; (2) several Arctic-Atlantic species of molluscs and ostracodes migrated to the eastern North Pacific between 4.2−3.0 Ma, presumably through the proto-Bering Strait; (3) many species found in the Karaginsky Island Pliocene represent Pacific taxa which migrated through the Arctic into the North Atlantic during the late Pliocene.

eastern Kamchatka, Karaginsky Island↗

USGS2018

High-energy, high-fat lifestyle challenges an Arctic apex predator, the polar bear

Regional declines in polar bear ( Ursus maritimus ) populations have been attributed to changing sea ice conditions, but with limited information on the causative mechanisms. By simultaneously measuring field metabolic rates, daily activity patterns, body condition, and foraging success of polar bears moving on the spring sea ice, we found that high metabolic rates (1.6 times greater than previously assumed) coupled with low intake of fat-rich marine mammal prey resulted in an energy deficit for more than half of the bears examined. Activity and movement on the sea ice strongly influenced metabolic demands. Consequently, increases in mobility resulting from ongoing and forecasted declines in and fragmentation of sea ice are likely to increase energy demands and may be an important factor explaining observed declines in body condition and survival.

Science↗

USGS1999

Fishes in mangrove prop-root habitats of northeastern Florida Bay: Distinct assemblages across an estuarine gradient

Seasonal changes in freshwater inflow and other environmental conditions may induce changes in density and species composition of mangrove fishes along estuarine gradients. Fishes within mangrove habitats in a subtropical estuary were sampled monthly from May 1989 to May 1990, using block nets with rotenone and visual censuses. At 18 stations, temperature ranged from 22 to 34°C, depth from 10 to 104cm and underwater visibility from 1 to 13m. Salinity ranged from 0 to 60 upstream, and 35 to 54 mid- and downstream. A total of 573191 individuals (76 species) was observed or collected, with an average density of 6·5 fish m −2 . Engraulidae, Atherinidae, Poeciliidae and Cyprinodontidae numerically dominated the assemblage. Distinct assemblages occurred up-, mid- and downstream and maintained coherent groups in these gradient positions over the seasons. Residents totalled 94·5% of the individuals, estuarine transients comprised 5·1% and occasional marine visitors were less than 0·4%. Densities of resident fishes peaked in winter as temperatures and water levels fell, uncorrelated with changes in salinity. These observations suggest that mangrove habitats may sustain diverse and abundant fish communities dominated by euryhaline residents. Although estuarine transients were consistently rare in upstream sub-basins, downstream were found numerous sub-adults of species occurring as adults on nearby reefs (Lutjanidae, Haemulidae). Thus, reef-associated estuarine transients may be abundant in mangrove habitats having near-marine salinities. Contrary to expectations, mangrove habitats in northeastern Florida bay did not function as a nursery as defined under the nursery-ground paradigm: young-of-the-year juveniles of estuarine transient species did not seek low salinity sub-basins. However, northeastern Florida Bay may not be representative of most mangrove estuaries as the area: (1) is without lunar tides and related circulation; (2) has low and variable amounts of submersed vegetation; and (3) experiences severe hypersaline conditions.

Estuarine, Coastal and Shelf Science↗

USGS2009

Prey choice and habitat use drive sea otter pathogen exposure in a resource-limited coastal system

The processes promoting disease in wild animal populations are highly complex, yet identifying these processes is critically important for conservation when disease is limiting a population. By combining field studies with epidemiologic tools, we evaluated the relationship between key factors impeding southern sea otter ( Enhydra lutris nereis ) population growth: disease and resource limitation. This threatened population has struggled to recover despite protection, so we followed radio-tagged sea otters and evaluated infection with 2 disease-causing protozoal pathogens, Toxoplasma gondii and Sarcocystis neurona , to reveal risks that increased the likelihood of pathogen exposure. We identified patterns of pathogen infection that are linked to individual animal behavior, prey choice, and habitat use. We detected a high-risk spatial cluster of S. neurona infections in otters with home ranges in southern Monterey Bay and a coastal segment near San Simeon and Cambria where otters had high levels of infection with T. gondii . We found that otters feeding on abalone, which is the preferred prey in a resource-abundant marine ecosystem, had a very low risk of infection with either pathogen, whereas otters consuming small marine snails were more likely to be infected with T. gondii . Individual dietary specialization in sea otters is an adaptive mechanism for coping with limited food resources along central coastal California. High levels of infection with protozoal pathogens may be an adverse consequence of dietary specialization in this threatened species, with both depleted resources and disease working synergistically to limit recovery.

California↗

USGS2021

Using bottom trawls to monitor subsurface water clarity in marine ecosystems

Biophysical processes that affect subsurface water clarity play a key role in ecosystem function. However, subsurface water clarity is poorly monitored in marine ecosystems because doing so requires in-situ sampling that is logistically difficult to conduct and sustain. Novel solutions are thus needed to improve monitoring of subsurface water clarity. To that end, we developed a sampling method and data processing algorithm that enable the use of bottom trawl fishing gear as a platform for conducting subsurface water clarity monitoring using trawl-mounted irradiance sensors without disruption to fishing operations. The algorithm applies quality control checks to irradiance measurements and calculates the downwelling diffuse attenuation coefficient, K d , and optical depth, ζ – apparent optical properties (AOPs) that characterize the rate of decrease in downwelling irradiance and relative irradiance transmission to depth, respectively. We applied our algorithm to irradiance measurements, obtained using bottom-trawl-mounted archival tags equipped with a photodiode collected during NOAA’s Alaska Fisheries Science Center annual summer bottom trawl surveys of the eastern Bering Sea continental shelf from 2004 to 2018. We validated our AOPs by quantitatively comparing surface-weighted K d from tags to the multi-sensor K d (490) product from the Ocean Colour Climate Change Initiative project (OC-CCI) and qualitatively evaluating whether tag K d was consistent with patterns of subsurface chlorophyll-a concentrations predicted by a coupled regional physical-biological model (Bering10K-BESTNPZ). We additionally examined patterns and trends in water clarity in the eastern Bering Sea. Key findings are: 1) water clarity decreased significantly from 2004 to 2018; 2) a recurrent, pycnocline-associated, maximum in K d occurred over much of the northwestern shelf, putatively due to a subsurface chlorophyll maximum; and 3) a turbid bottom layer (nepheloid layer) was present over a large portion of the eastern Bering Sea shelf. Our study demonstrates that bottom trawls can provide a useful platform for monitoring water clarity, especially when trawling is conducted as part of a systematic stock assessment survey.

Alaska↗

USGS2002

Place vs. time and vegetational persistence: A comparison of four tropical mires from the Illinois Basin during the height of the Pennsylvanian Ice Age

Coal balls were collected from four coal beds in the southeastern part of the Illinois Basin. Collections were made from the Springfield, Herrin, and Baker coals in western Kentucky, and from the Danville Coal in southwestern Indiana. These four coal beds are among the principal mineable coals of the Illinois Basin and belong to the Carbondale and Shelburn Formations of late Middle Pennsylvanian age. Vegetational composition was analyzed quantitatively. Coal-ball samples from the Springfield, Herrin, and Baker are dominated by the lycopsid tree Lepidophloios, with lesser numbers of Psaronius tree ferns, medullosan pteridosperms, and the lycopsid trees Synchysidendron and Diaphorodendron. This vegetation is similar to that found in the Springfield and Herrin coals elsewhere in the Illinois Basin, as reported in previous studies. The Danville coal sample, which is considerably smaller than the others, is dominated by Psaronius with the lycopsids Sigillaria and Synchysidendron as subdominants. Coal balls from the Springfield coal were collected in zones directly from the coal bed and their zone-by-zone composition indicates three to four distinct plant assemblages. The other coals were analyzed as whole-seam random samples, averaging the landscape composition of the parent mire environments. This analysis indicates that these coals, separated from each other by marine and terrestrial-clastic deposits, have essentially the same floristic composition and, thus, appear to represent a common species pool that persisted throughout the late Middle Pennsylvanian, despite changes in baselevel and climate attendant the glacial interglacial cyclicity of the Pennsylvanian ice age. Patterns of species abundance and diversity are much the same for the Springfield, Herrin, and Baker, although each coal, both in the local area sampled, and regionally, has its own paleobotanical peculiarities. Despite minor differences, these coals indicate a high degree of recurrence of assemblage and landscape organization. The Danville departs dramatically from the dominance-diversity composition of the older coals, presaging patterns of tree-fern and Sigillaria dominance of Late Pennsylvanian coals of the eastern United States, but, nonetheless, built on a species pool shared with the older coals. ?? 2002 Elsevier Science B.V. All rights reserved.

International Journal of Coal Geology↗

USGS2016

Trophic magnification of organic chemicals: A global synthesis

Production of organic chemicals (OCs) is increasing exponentially, and some OCs biomagnify through food webs to potentially toxic levels. Biomagnification under field conditions is best described by trophic magnification factors (TMFs; per trophic level change in log-concentration of a chemical) which have been measured for more than two decades. Syntheses of TMF behavior relative to chemical traits and ecosystem properties are lacking. We analyzed >1500 TMFs to identify OCs predisposed to biomagnify and to assess ecosystem vulnerability. The highest TMFs were for OCs that are slowly metabolized by animals (metabolic rate k M < 0.01 day –1 ) and are moderately hydrophobic (log K OW 6–8). TMFs were more variable in marine than freshwaters, unrelated to latitude, and highest in food webs containing endotherms. We modeled the probability that any OC would biomagnify as a combined function of K OW and k M . Probability is greatest (&sim;100%) for slowly metabolized compounds, regardless of K OW , and lowest for chemicals with rapid transformation rates ( k M > 0.2 day –1 ). This probabilistic model provides a new global tool for screening existing and new OCs for their biomagnification potential.

Environmental Science & Technology↗

USGS2003

Sea otter studies in Glacier Bay National Park and Preserve: annual report 2002

Since 1995, the number of sea otters in Glacier Bay proper has increased from around 5 to more than 1200. Sea otter distribution is mostly limited to the Lower Bay, south of Sandy Cove, and is not continuous within that area. Concentrations occur in the vicinity of Sita Reef and Boulder Island and between Pt. Carolus and Rush Pt. on the west side of the Bay, although there have been occasional sightings north of Sandy Cove (Figure 1). Large portions of the Bay remain unoccupied by sea otters, but recolonization is occurring rapidly. Most prey recovered by sea otters in Glacier Bay are ecologically, commercially, or socially important species. In 2002 sea otter diet consisted of 35% clam, 26% mussel, 3% crab, 3.0% snail, 2% starfish, 11% urchins, 2% other, and 20% unidentified. Dominant clam species include the butter clam, Saxidomus gigantea , the Greenland cockle, Serripes groenlandicus , and the littleneck clam, Protothaca staminea . Urchins are primarily green urchins, Strongylocentrotus droebachiensis , and the mussel is Modiolus modiolus . Crabs observed in 2002 include the Dungeness, Cancer magister , the kelp crab Pugettia gracilis , and the helmet crab, Telmessus cherigonus . Although we characterize diet at broad geographic scales, we have previously found diet to vary between sites separated by as little as several hundred meters. Dietary variation among and within sites can reflect differences in prey availability as well as individual specialization. We estimated species composition, density, biomass, and sizes of subtidal clams, urchins, and mussels at 13 sites in Glacier Bay and 5 sites in nearby Port Althorp, where sea otters have been present for at least 20 years. All sites were selected based on the presence of abundant clam siphons and the absence of sea otters (Glacier Bay) or abundant shell litter and the presence of sea otters (Port Althorp). Glacier Bay sites were selected to achieve a broad geographic sample of dense subtidal clam beds within Glacier Bay prior to occupation and foraging by sea otters. Port Althorp sites were chosen to achieve a representative sample of subtidal clam beds already under prolonged foraging pressure by sea otters. There was no direct evidence of otter foraging at any of our Glacier Bay sampling sites. In Glacier Bay, we sampled 15,338 bivalves (average of 1,180/site) representing 14 species of clam, 2 species of mussel, and a single scallop and we sampled 6,917 urchins (average of 513/site). In Port Althorp, we sampled 1,034 bivalves (average of 207/site) representing 14 species of clam. We found only 5 urchins, all S. droebachiensis . Mean densities and biomass of all subtidal clams were significantly greater in Glacier Bay (59.2 and 99/0.25m 2 compared to Port Althorp (10.3 and 5.8/0.25m 2 (p<0.002 for both). Our contrasts of subtidal clam populations between Glacier Bay and Port Althorp suggest that clam densities will likely decline by about a factor of six and that clam biomass estimates will decline by more than a factor of ten. Numerically dominant species of clams, P. staminea , S. gigantea , Macoma sp. and Mya sp. were all significantly greater in density and biomass in Glacier Bay, while C. nutalli density was low but significantly higher in Port Althorp. Subtidal clam species diversity was significantly greater in Port Althorp compared to Glacier Bay, although this may simply reflect habitat differences. Sea urchin densities were high in Glacier Bay, while in Port Althorp urchins were virtually absent. Sea otters are now well established in limited areas of the lower portions of Glacier Bay. It is likely that distribution and numbers of sea otters will continue to increase in Glacier Bay in the near future. Glacier Bay supports large and diverse populations of clams that are largely unexploited by sea otters at present. It is predictable that the density and sizes of clam populations will decline in response to otter predation. This will result in fewer opportunities for human harvest, but will also trigger ecosystem level changes, as prey for other predators, such as octopus, sea stars, fishes, birds and mammals are modified. Sea otters will also modify benthic habitats through excavation of sediments required to extract burrowing infauna such as clams. Effects of sediment disturbance by foraging sea otters are not understood. Glacier Bay also supports large populations of other preferred sea otter prey, such as king ( Paralithodes sp. ), tanner ( Chionoecetes sp. ) and dungeness ( Cancer magister ) crabs and green sea urchins ( S. droebachiensis ). As the colonization of Park waters by sea otters continues, it is also likely that dramatic changes will occur in the species composition, abundance, and size class distribution of many components of the nearshore marine ecosystem. Many of the changes will occur as a direct result of predation by sea otters. Others will result from indirect or cascading effects of sea otter foraging, such as increased kelp production and modified prey availability for other nearshore predators. Without recognizing and quantifying the extent of change initiated by the colonization of Glacier Bay by sea otters, management of nearshore resources will be severely constrained for many decades.

Alaska↗

USGS1994

Magnetostratigraphy of the Willwood Formation, Bighorn Basin, Wyoming: New constraints on the location of Paleocene/Eocene boundary

The lower Eocene Willwood Formation in the Bighorn Basin of Wyoming preserves a rich and diverse mammalian and floral record. The paleomagnetic behavior of the sequence of floodplain paleosols of varying degrees of maturation ranges from excellent to poor. We present a magnetostratigraphic section for a composite section near Worland, Wyoming, by using a set of strict criteria for interpreting the step-wise alternating field and thermal demagnetization data of 266 samples from 90 sites throughout the composite section. Correlation to the geomagnetic reversal time scale was achieved by combining magnetostratigraphic and biostratigraphic data from this section, from a section in the Clark's Fork Basin in northern Wyoming, and from DSDP Site 550, with the isotopic data determined on a tuff near the top of our section. Our correlation suggests that the Bighorn Basin composite section in the Worland area spans from within Chron C24r to near the top of Chron C24n, or from approximately 55 to 52 Ma. This correlation places the Paleocene/Eocene boundary within the vicinity of the base of the section. Cryptochron C24r.6 of Cande and Kent is tentatively identified some 100 m above the base of the section. The temporal framework provided here enables correlation of the mammalian biostratigraphy of the Bighorn Basin to other continental sequences as well as to marine records. It also provides independent chronological information for the calculation of sediment accumulation rates to constrain soil maturation rates. We exclude an age as young as 53 Ma for the Paleocene/Eocene boundary and support older ages, as recommended in recent time scales. The location of a tuff dated at 52.8 ± 0.3 Ma at the older boundary C24n.1 is consistent with the age of 52.5 Ma estimated by Cande and Kent and inconsistent with that of 53.7 Ma, from Harland et al.

Wyoming↗

USGS2009

A marine biogeochemical perspective on black shale deposition

Deposition of marine black shales has commonly been interpreted as having involved a high level of marine phytoplankton production that promoted high settling rates of organic matter through the water column and high burial fluxes on the seafloor or anoxic (sulfidic) water-column conditions that led to high levels of preservation of deposited organic matter, or a combination of the two processes. Here we review the hydrography and the budgets of trace metals and phytoplankton nutrients in two modern marine basins that have permanently anoxic bottom waters. This information is then used to hindcast the hydrography and biogeochemical conditions of deposition of a black shale of Late Jurassic age (the Kimmeridge Clay Formation, Yorkshire, England) from its trace metal and organic carbon content. Comparison of the modern and Jurassic sediment compositions reveals that the rate of photic zone primary productivity in the Kimmeridge Sea, based on the accumulation rate of the marine fraction of Ni, was as high as 840 g organic carbon m − 2 yr −1 . This high level was possibly tied to the maximum rise of sea level during the Late Jurassic that flooded this and other continents sufficiently to allow major open-ocean boundary currents to penetrate into epeiric seas. Sites of intense upwelling of nutrient-enriched seawater would have been transferred from the continental margins, their present location, onto the continents. This global flooding event was likely responsible for deposition of organic matter-enriched sediments in other marine basins of this age, several of which today host major petroleum source rocks. Bottom-water redox conditions in the Kimmeridge Sea, deduced from the V:Mo ratio in the marine fraction of the Kimmeridge Clay Formation, varied from oxic to anoxic, but were predominantly suboxic, or denitrifying. A high settling flux of organic matter, a result of the high primary productivity, supported a high rate of bacterial respiration that led to the depletion of O 2 in the bottom water. A high rate of burial of labile organic matter, albeit a low percentage of primary productivity, in turn promoted anoxic conditions in the sediment pore waters that enhanced retention of trace metals deposited from the water column.

Earth-Science Reviews↗

USGS2001

Ecosystem impacts of three sequential hurricanes (Dennis, Floyd, and Irene) on the United States' largest lagoonal estuary, Pamlico Sound, NC

Three sequential hurricanes, Dennis, Floyd, and Irene, affected coastal North Carolina in September and October 1999. These hurricanes inundated the region with up to 1 m of rainfall, causing 50- to 500-year flooding in the watershed of the Pamlico Sound, the largest lagoonal estuary in the United States and a key West Atlantic fisheries nursery. We investigated the ecosystem-level impacts on and responses of the Sound to the floodwater discharge. Floodwaters displaced three-fourths of the volume of the Sound, depressed salinity by a similar amount, and delivered at least half of the typical annual nitrogen load to this nitrogen-sensitive ecosystem. Organic carbon concentrations in floodwaters entering Pamlico Sound via a major tributary (the Neuse River Estuary) were at least 2-fold higher than concentrations under prefloodwater conditions. A cascading set of physical, chemical, and ecological impacts followed, including strong vertical stratification, bottom water hypoxia, a sustained increase in algal biomass, displacement of many marine organisms, and a rise in fish disease. Because of the Sound's long residence time (???1 year), we hypothesize that the effects of the short-term nutrient enrichment could prove to be multiannual. A predicted increase in the frequency of hurricane activity over the next few decades may cause longer-term biogeochemical and trophic changes in this and other estuarine and coastal habitats.

Proceedings of the National Academy of Sciences of↗