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At least 865 records · Page 48Linked to original sources

USGS1994

Evaluation of methods for delineating areas that contribute water to wells completed in valley-fill aquifers in Pennsylvania

Valley-fill aquifers in Pennsylvania are the source of drinking water for many wells in the glaciated parts of the State and along major river valleys. These aquifers area subject to contamination because of their shallow water-table depth and highly transmissive sediments. The possibility for contamination of water-supply wells in valley-fill aquifers can be minimized by excluding activities that could contaminate areas that contribute water to supply wells. An area that contributes water to a well is identified in this report as either an area of diversion, time-of-travel area, or contributing area. The area of diversion is a projection to land surface of the valley-fill aquifer volume through which water is diverted to a well and the time-of travel area is that fraction of the area of diversion through which water moves to the well in a specified time. The contributing area, the largest of three areas, includes the area of diversion but also incorporates bedrock uplands and other area that contribute water. Methods for delineating areas of diversion and contributing areas in valley-fill aquifers, described and compared in order of increasing complexity, include fixed radius, uniform flow, analytical, semianalytical, and numerical modeling. Delineated areas are considered approximations because the hydraulic properties and boundary conditions of the real ground-water system are simplified even in the most complex numerical methods. Successful application of any of these methods depends on the investigator's understanding of the hydrologic system in and near the well field, and the limitations of the method. The hydrologic system includes not only the valley-fill aquifer but also the regional surface-water and ground-water flow systems within which the valley is situated. As shown by numerical flow simulations of a well field in the valley-fill aquifer along Marsh Creek Valley near Asaph, Pa., water from upland bedrock sources can provide nearly all the water contributed to the well.

Open-File Report↗

USGS2006

An assessment of flow data from Klamath River sites between Link River Dam and Keno Dam, south-central Oregon

Records of diversion and return flows for water years 1961?2004 along a reach of the Klamath River between Link River and Keno Dams in south-central Oregon were evaluated to determine the cause of a water-balance inconsistency in the hydrologic data. The data indicated that the reach was losing flow in the 1960s and 1970s and gaining flow in the 1980s and 1990s. The absolute mean annual net water-balance difference in flows between the first and second half of the 44-year period (1961-2004) was approximately 103,000 acre-feet per year (acre-ft/yr). The quality of the diversion and return-flow records used in the water balance was evaluated using U.S. Geological Survey (USGS) criteria for accuracy. With the exception of the USGS Klamath River at Keno record, which was rated as 'good' or 'excellent,' the eight other flow records, all from non-USGS flow-measurement sites, were rated as 'poor' by USGS standards due to insufficient data-collection documentation and a lack of direct discharge measurements to verify the rating curves. The record for the Link River site, the most upstream in the study area, included both river and westside power canal flows. Because of rating curve biases, the river flows might have been overestimated by 25,000 acre-ft/yr on average from water years 1961 to 1982 and underestimated by 7,000 acre-ft/yr on average from water years 1983 to 2004. For water years 1984-2004, westside power canal flows might have been underestimated by 11,000 acre-ft/yr. Some diversion and return flows (for mostly agricultural, industrial, and urban use) along the Klamath River study reach, not measured continuously and not included in the water-balance equation, also were evaluated. However, the sum of these diversion and return flows was insufficient to explain the water-balance inconsistency. The possibility that ground-water levels in lands adjacent to the river rose during water years 1961-2004 and caused an increase in ground-water discharge to the river also was evaluated. However, water-level data from local wells did not have a rising trend during the period. The most likely cause of the water-balance inconsistency was flow measurement error in the eight non-USGS flow records. Part of the water-balance inconsistency can be explained by a 43,000 acre-foot error in the river and canal flow portions of the Link River flow record. A remaining 60,000 acre-foot error might have been distributed among the seven other flow records, or much of the remaining 60,000 acre-foot error might have been in the Link River flow record because flows in that record had a greater magnitude than flows in the seven other records. As an additional analysis of the water-balance issue, flow records used in the water balance were evaluated for trends and compared to known changes in water management in the Bureau of Reclamation Klamath Project and Lower Klamath and Tule Lake National Wildlife Refuges over the 44-year period. Many of the water-management changes were implemented in the early 1980s. For three diversion flow records, 1983-2004 mean annual flows were 16,000, 8,000, and 21,000 acre-ft/yr greater than their 1961-82 mean annual flows. Return flows to the Klamath River at two flow-measurement sites decreased by 31,000 and 27,000 acre-ft/yr for 1983-2004 compared with the 1961-82 period.

Scientific Investigations Report↗

USGS2007

Geochemical effects of induced stream-water and artificial recharge on the Equus Beds Aquifer, South-Central Kansas, 1995-2004

Artificial recharge of the Equus Beds aquifer is part of a strategy implemented by the city of Wichita, Kansas, to preserve future water supply and address declining water levels in the aquifer of as much as 30 feet caused by withdrawals for water supply and irrigation since the 1940s. Water-level declines represent a diminished water supply and also may accelerate migration of saltwater from the Burrton oil field to the northwest and the Arkansas River to the southwest into the freshwater of the Equus Beds aquifer. Artificial recharge, as a part of the Equus Beds Ground-Water Recharge Project, involves capturing flows larger than base flow from the Little Arkansas River and recharging the water to the Equus Beds aquifer by means of infiltration or injection. The geochemical effects on the Equus Beds aquifer of induced stream-water and artificial recharge at the Halstead and Sedgwick sites were determined through collection and analysis of hydrologic and water-quality data and the application of statistical, mixing, flow and solute-transport, and geochemical model simulations. Chloride and atrazine concentrations in the Little Arkansas River and arsenic concentrations in ground water at the Halstead recharge site frequently exceeded regulatory criteria. During 30 percent of the time from 1999 through 2004, continuous estimated chloride concentrations in the Little Arkansas River at Highway 50 near Halstead exceeded the Secondary Drinking-Water Regulation of 250 milligrams per liter established by the U.S. Environmental Protection Agency. Chloride concentrations in shallow monitoring wells located adjacent to the stream exceeded the drinking-water criterion five times from 1995 through 2004. Atrazine concentrations in water sampled from the Little Arkansas River had large variability and were at or near the drinking-water Maximum Contaminant Level of 3.0 micrograms per liter as an annual average established by the U.S. Environmental Protection Agency. Atrazine concentrations were much smaller than the drinking-water criterion and were detected at much smaller concentrations in shallow monitoring wells and diversion well water located adjacent to the stream probably because of sorption on aquifer sediment. Before and after artificial recharge, large, naturally occurring arsenic concentrations in the recharge water for the Halstead diversion well and recharge site exceeded the Maximum Contaminant Level of 10 micrograms per liter established by the U.S. Environmental Protection Agency for drinking water. Arsenic and iron concentrations decreased when water was recharged through recharge basins or a trench; however, chemical precipitation and potential biofouling eventually may decrease the artificial recharge efficiency through basins and trenches. At the Sedgwick site, chloride concentrations infrequently exceeded regulatory criteria. Large concentrations of atrazine were treated to decrease concentrations to less than regulatory criteria. Recharge of treated stream water through recharge basins avoids potentially large concentrations of arsenic and iron that exist at the Halstead diversion site. Results from a simple mixing model using chloride as a tracer indicated that the water chemistry in shallow monitoring well located adjacent to the Little Arkansas River was 80 percent of stream water, demonstrating effective recharge of the alluvial aquifer by the stream. Results also indicated that about 25 percent of the water chemistry of the diversion well water was from the shallow part of the aquifer. Additionally, diverting water through a diversion well located adjacent to the stream removed about 75 percent of the atrazine, probably through sorption to aquifer sediment, and decreased the need for additional water treatment to remove atrazine.

Kansas↗

USGS2009

Water Budgets of the Walker River Basin and Walker Lake, California and Nevada

The Walker River is the main source of inflow to Walker Lake, a closed-basin lake in west-central Nevada. The only outflow from Walker Lake is evaporation from the lake surface. Between 1882 and 2008, upstream agricultural diversions resulted in a lake-level decline of more than 150 feet and storage loss of 7,400,000 acre-feet. Evaporative concentration increased dissolved solids from 2,500 to 17,000 milligrams per liter. The increase in salinity threatens the survival of the Lahontan cutthroat trout, a native species listed as threatened under the Endangered Species Act. This report describes streamflow in the Walker River basin and an updated water budget of Walker Lake with emphasis on the lower Walker River basin downstream from Wabuska, Nevada. Water budgets are based on average annual flows for a 30-year period (1971-2000). Total surface-water inflow to the upper Walker River basin upstream from Wabuska was estimated to be 387,000 acre-feet per year (acre-ft/yr). About 223,000 acre-ft/yr (58 percent) is from the West Fork of the Walker River; 145,000 acre-ft/yr (37 percent) is from the East Fork of the Walker River; 17,000 acre-ft/yr (4 percent) is from the Sweetwater Range; and 2,000 acre-ft/yr (less than 1 percent) is from the Bodie Mountains, Pine Grove Hills, and western Wassuk Range. Outflow from the upper Walker River basin is 138,000 acre-ft/yr at Wabuska. About 249,000 acre-ft/yr (64 percent) of inflow is diverted for irrigation, transpired by riparian vegetation, evaporates from lakes and reservoirs, and recharges alluvial aquifers. Stream losses in Antelope, Smith, and Bridgeport Valleys are due to evaporation from reservoirs and agricultural diversions with negligible stream infiltration or riparian evapotranspiration. Diversion rates in Antelope and Smith Valleys were estimated to be 3.0 feet per year (ft/yr) in each valley. Irrigated fields receive an additional 0.8 ft of precipitation, groundwater pumpage, or both for a total applied-water rate of 3.8 ft/yr. The average corrected total evapotranspiration rate for alfalfa is 3.2 ft/yr so about 0.6 ft/yr (15 percent) flushes salts from the soil. The diversion rate in Bridgeport Valley was estimated to be 1.1 ft/yr and precipitation is 1.3 ft/yr. The total applied-water rate of 2.4 ft/yr is used to irrigate pasture grass. The total applied water rate in the East Fork of the Walker River and Mason Valley was estimated to be 4.8 ft/yr in each valley. The higher rate likely is due to appreciable infiltration, riparian evapotranspiration, or both. Assuming a diversion rate of 3.0 ft/yr, stream loss due to infiltration and riparian evapotranspiration is about 3,000 acre-ft/yr along the East Fork of the Walker River and 14,000 acre-ft/yr in Mason Valley. In the lower Walker River basin, overall and groundwater budgets were calculated for Wabuska to Schurz, Nev., and Schurz to Walker Lake. An overall water budget was calculated for the combined reaches. Imbalances in the water budgets range from 1 to 7 percent, which are insignificant statistically, so the water budgets balance. Total inflow to the Wabuska-Walker Lake reach from the river and others sources is 140,000 acre-ft/yr. Stream and subsurface discharge into the northern end of Walker Lake totals 110,000 acre-ft/yr. About 30,000 acre-ft/yr is lost on the Walker River Indian Reservation from agricultural evapotranspiration, evapotranspiration by native and invasive vegetation, domestic pumpage, and subsurface outflow from the basin through Double Spring and the Wabuska lineament. Alfalfa fields in the upper Walker River basin are lush and have an average corrected total evapotranspiration rate of 3.2 ft/yr. Alfalfa fields on the Walker River Indian Reservation are not as lush and have a total corrected evapotranspiration rate of 1.6-2.1 ft/yr, which partly could be due to alkaline soils that were submerged by Pleistocene Lake Lahontan. The total applied-water rate is 7.0 ft/yr, almost twice the

Scientific Investigations Report↗

USGS2016

Quantifying seepage using heat as a tracer in selected irrigation canals, Walker River Basin, Nevada, 2012 and 2013

The Walker River is an important source of water for western Nevada. The river provides water for agriculture and recharge to local aquifers used by several communities. Farmers began diverting water from the Walker River in the 1860s to support growing agricultural development. Over time, the reduced inflows into Walker Lake from upstream reservoirs and diversions have resulted in 170 feet of lake level decline and increased dissolved-solids concentrations to levels that threaten aquatic ecosystems, including survival of Lahonton cutthroat trout, a native species listed in the Endangered Species Act. Investigations of the water-budget components in the Walker River Basin have revealed uncertainty in the recharge to aquifers from irrigation canals. To address this need, the U.S. Geological Survey conducted an extensive field study from March 2012 through October 2013 to quantify seepage losses in selected canals in the Smith Valley, Mason Valley, and Walker Lake Valley irrigation areas. The seepage rates estimated for the 2012 and 2013 irrigation seasons in the Smith Valley transect sites (Saroni and Plymouth canals) ranged between 0.01 to 2.5 feet per day (ft/d) (0.01 to 0.68 cubic feet per second per mile [ ft 3 /s-mi ]). From 2012 to 2013, the average number of days the canals had flowing water decreased from 190 to 125 due to drier climate and lack of water available for diversion from the Walker River. The nearly 50-percent reductions in volumetric loss rates between 2012 and 2013 were associated with less than average diversions into canals from the Walker River and reductions in infiltration rates following routine canal maintenance. Models developed for the Saroni canal in 2012 were recalibrated in 2013 to evaluate changes in seepage as a result of siltation. Just prior to the 2012 irrigation season, nearly the entire length of the canal was cleared of vegetation and debris to improve flow conveyance. In 2013, following the first year of maintenance, a 90-percent reduction in seepage was observed at one of the transect sites. The removal of sediment-clogged layers during canal maintenance may have more profound effects on seepage rates beyond what was observed at the transect sites. The seepage rates for the Saroni canal in 2012 ranged from 0.02 to 1.6 ft/d (0.03 to 0.4 ft 3 /s-mi ). The total seepage loss in the Saroni canal for the 2012 and 2013 irrigation seasons was estimated to be 1,100 and 590 acre-feet (acre-ft), respectively. Seepage rates on the Plymouth canal in Smith Valley in 2012 were among the lowest, ranging from 0.01 to 0.2 ft/d (0.01 to 0.1 ft 3 /s-mi ). In 2013, the seepage rate on the Plymouth canal was similar to 2012; however, the volumetric loss was reduced by 50 percent due to the 50-percent reduction in number of canal flow days. Lower rates of seepage on the Plymouth canal for the 2012 and 2013 irrigation seasons were estimated to be 210 and 130 acre-ft, respectively. The seepage rates estimated for the 2012 and 2013 irrigation seasons in the Mason Valley transect sites (Fox, Mickey, and Campbell ditches) ranged from 0.1 to 3.3 ft/d (0.2 to 1.3 ft 3 /s-mi ). The influence of water-table declines on seepage was observed at the Mickey and Campbell ditches. In 2012, the estimated seepage on the Mickey ditch was 1.6 ft/d during a period when the water-table altitude was at or above the canal altitude. Following extensive declines in the water table, the hydraulic gradient increased between the canal and the shallow aquifer, thereby increasing the seepage rates to 3.2 ft/d in 2013. During the period of hydraulic disconnection, seepage rates increased to 9.5 ft/d during intermittent periods of canal flow. For the Mickey ditch, the seepage loss in 2013 was 1.5 times the rate estimated in 2012 despite the canal having 45 days less flow. Similarly, the Campbell ditch seepage loss increased slightly from 660 to 700 acre-ft, a factor of 1.1, with 49 days less flow. The seepage loss for the Fox ditch did not exhibit significant year to year variability. The annual seepage loss estimated for 2012 and 2013 in the Fox ditch was 2,100 and 2,200 acre-ft, respectively. The seepage rates estimated for the 2013 irrigation season in the Walker Lake Valley transect sites (Schurz Lateral Canals 1A and 2A, and Canal 2) ranged from 0.7 to 0.9 ft/d (0.4 to 1.3 ft 3 /s-mi ). In Walker Lake Valley, diversions into Lateral Canals 1A and 2A during the 2013 irrigation season were highly intermittent, a characteristic common of lateral diversions. The annual estimated seepage loss in Walker Lake Valley ranged between 50 and 725 acre-ft among the transect sites.

California, Nevada↗

USGS2017

Performance measures for a Mississippi River reintroduction into the forested wetlands of Maurepas Swamp

The use of freshwater diversions (river reintroductions) from the Mississippi River as a restoration tool to rehabilitate Louisiana coastal wetlands has been promoted widely since the first such diversion at Caernarvon became operational in the early 1990s. To date, aside from the Bonnet Carré Spillway (which is designed and operated for flood control), there are only four operational Mississippi River freshwater diversions (two gated structures and two siphons) in coastal Louisiana, and they all target salinity intrusion, shellfish management, and (or) the enhancement of the integrity of marsh habitat. River reintroductions carry small sediment loads for various design reasons, but they can be effective in delivering freshwater to combat saltwater intrusion and increase the delivery of nutrients and suspended fine-grained sediments to receiving wetlands. River reintroductions may be an ideal restoration tool for targeting coastal swamp forest habitat; much of the area of swamp forest habitat in coastal Louisiana is undergoing saltwater intrusion, high rates of submergence, and lack of riverine flow leading to reduced concentrations of important nutrients and suspended sediments, which sustain growth and regeneration, help to aerate swamp soils, and remove toxic compounds from the rhizosphere. The State of Louisiana Coastal Protection and Restoration Authority (CPRA) has made it a priority to establish a small freshwater river diversion into a coastal swamp forest located between Baton Rouge and New Orleans, Louisiana, to reintroduce Mississippi River water to Maurepas Swamp. While a full understanding of how a coastal swamp forest will respond to new freshwater loading through a Mississippi River reintroduction is unknown, this report provides guidance based on the available literature for establishing performance measures that can be used for evaluating the effectiveness of a Mississippi River reintroduction into the forested wetlands of Maurepas Swamp (project PO-29 of the Coastal Wetlands Planning, Protection and Restoration Act) and aid in adaptive management of the project. PO-29 is a small river reintroduction in scope, and through its operation, it will provide information about the feasibility and reasonable expectations for future river reintroduction projects targeting coastal swamp forests in Louisiana. Located near Garyville, Louisiana, the Mississippi River reintroduction into Maurepas Swamp project is being designed to deliver a maximum flow of 57 cubic meters per second (m 3 /s) (or about 2,000 cubic feet per second [ft 3 /s]) directly from the river, but with a maximum flow through the outflow channel of 42 m 3 /s (or 1,500 ft 3 /s) available for at least half of the year. The river reintroduction will divert Mississippi River water through channelized flow and surface water to impact approximately 16,583 hectares (ha) of wetland habitat, much of which is swamp forest and swamp forest transitioning into marsh habitat. The Mississippi River reintroduction into Maurepas Swamp and associated outfall management features collectively should facilitate connectivity of water between the Mississippi River and the entire project area. At any given location, hydrologic connectivity should occur at intervals between twice yearly and once per decade, and hydrologic management must allow the potential for water drawdowns to foster tree regeneration every 3–13 years. The river reintroduction is also anticipated to maintain salinity in swamp forests dominated by Taxodium distichum (baldcypress) to less than 1.3 practical salinity units (psu) and maintain salinity in mixed baldcypress and Nyssa aquatica (water tupelo) swamp forests to less than 0.8 psu. The river reintroduction should promote soil surface elevation gains of 8–9 millimeters per year (mm/yr) (range, 4.9–12.1 mm/yr) to offset relative sea-level rise and keep total river water nitrate (NO 3 - ) loading into Maurepas Swamp to about 11.25 grams (g) of nitrogen (N) per square meter per year (m -2 yr -1 ) (range, 7.1–15.4 g N m -2 yr -1 ) to promote near complete uptake of NO 3 - by the vegetation in the receiving wetlands and reduce impacts to water quality in adjacent and connected water ways (for example, Blind River) and Lake Maurepas. With these performance measures maintained over time, we further expect swamp forest stands to realize improvements in stand density index of as much as 30–45 percent of maximum values for the stand type while maintaining an overstory leaf area index of 2.0–2.9 square meters per square meter or higher as swamp forests recover from decades of low flow, saltwater intrusion, reduced nutrients, and surface elevation deficits associated with isolation from the Mississippi River. Associated with these performance measures are two major uncertainties: (1) an assumption that we can rely on existing data, literature, and modeling from coastal swamp forests to establish these performance measures and (2) an unknown time frame for evaluating these performance measures. Some performance measures can be assessed quickly, such as those associated with hydrology and nutrient uptake. Some performance measures, such as changes in soil surface elevation and forest structural integrity, could take longer to assess. Once performance measures are assessed across different time scales, however, adjustments to operations of the Mississippi River reintroduction into Maurepas Swamp can be swift. The proposed performance measures are ideal targets, mostly without specific consideration of practical, operational constraints. The measures are intended to be the basis by which adaptive management of the diversion structures can be evaluated. The measures are defined without regard to current conditions so that project success can be evaluated on net outcomes rather than specific change from existing conditions. We expect that the Mississippi River reintroduction into Maurepas Swamp will slow degradation and extend the life of the swamp for decades to centuries.

Louisiana↗

USGS2019

Geology and paleontology of the late Miocene Wilson Grove Formation at Bloomfield Quarry, Sonoma County, California

An extensive fauna of at least 77 taxa is reported from the basal Wilson Grove Formation in a small quarry just north of the town of Bloomfield, Sonoma County, California. The fauna represents intertidal to shallow subtidal water depths and water temperatures interpreted from the fauna, consistent with the latitude of the fossil locality (37° north) during the late Miocene. The fauna from Bloomfield Quarry is unusually large and diverse from such a small area. It consists of thousands of specimens of 4 brachiopod, 42 mollusk (28 bivalves and 14 gastropods), 6 arthropod (1 crab, 1 shrimp, and 4 barnacles), and 25 vertebrate (3 sharks, 1 ray, 8 bony fishes, 9 marine mammals, and 4 birds) taxa. Unusual in the fauna is the abundant and diverse brachiopod fauna, the diverse barnacle fauna, which was described previously, and the extensive and diverse vertebrate fauna. Most significant among the vertebrates is the walrus fauna, which is the most diverse assemblage of walrus yet reported worldwide from a single locality. A single strontium (Sr) isotope age determination of about 8 million years (megaannum, Ma) from a pectinid mollusk is consistent with a new age determination of the overlying, informally named Roblar tuff as described by Sarna-Wojcicki in 1992 (6.203±0.011 Ma) and previously reported age determinations (recalculated here) from basalt (9.27±0.06 Ma) underlying these deposits. The Roblar tuff at Bloomfield Quarry can be correlated with other sites, including the Delgada Fan offshore northern California and the Coalinga anticline in California’s Central Valley. These age determinations conform with the “Jacalitos” California provincial molluscan stage age, the Hemphillian North American Land Mammal age determined from the fossils, and is part of the International Tortonian Stage of the Miocene.

California↗

USGS2023

Influence of increased freshwater inflow on nitrogen and phosphorus budgets in a dynamic subtropical estuary, Barataria Basin, Louisiana

Coastal Louisiana is currently experiencing high rates of wetland loss and large-scale ecosystem restoration is being implemented. One of the largest and most novel restoration projects is a controlled sediment diversion, proposed to rebuild and sustain wetlands by diverting sediment- and nutrient-rich water from the Mississippi River. However, the impact of this proposed sediment diversion on the nutrient budget of the receiving basin is largely unknown. A water quality model was developed to investigate the impact of the planned Mid-Barataria Sediment Diversion on the nutrient budget of the Barataria Basin (herein referred to as ‘the Basin’). The model results indicate that the planned diversion will increase TN and TP pools by about 38% and 17%, respectively, even with TN and TP loadings that increase by >300%. Water quality model results suggest that the increase of nutrients in the basin will be mitigated by increased advection transport (i.e., decreased residence time from ~170 days to ~40 days, leading to greater flushing) and increased removal via assimilation, denitrification, and settling within the Basin. Advection transport resulted in higher TN removal in the Basin than other processes, such as uptake or denitrification. Approximately 25% of the additional TN loading and 30% of the additional TP loading were processed within the Basin through the assimilation of phytoplankton and wetland vegetation, denitrification, and burial in the sediment/soils. These nutrient budgets help to better understand how the planned large-scale sediment diversion project may change the future ecological conditions within the estuaries of coastal Louisiana and near-shore northern Gulf of Mexico.

Louisiana↗

USGS2008

Prey of nesting ospreys on the Willamette and Columbia Rivers, Oregon and Washington

To more effectively use ospreys as a biomonitoring tool and to better assess contaminant pathways, the diet of nesting ospreys ( Pandion haliaetus ) was studied along the lower Columbia and upper mainstem Willamette rivers by evaluating prey remains collected from wire baskets constructed under artificial feeding perches installed near nest sites and from the ground beneath natural feeding perches and nests. Prey remains from 1997–2004 on the Columbia River and 1993 (previously published) and 2001 on the Willamette River were evaluated and compared. Largescale suckers ( Catostomus macrocheilus ) were the predominate fish species identified in collections from the Columbia River (61.5% [84.3% biomass]) and Willamette River (76.0% [92.7% biomass]). Prey fish diversity, when based only on ground collections, was higher in the Columbia (2.45) than the Willamette river (1.92) ( P = 0.038). Prey fish diversity in collections from the Willamette River did not differ between this study (2001) and previous study (1993) ( P = 0.62). Fish bones recovered in wire baskets are likely more representative of osprey diet compared to bones recovered from the ground, because prey diversity was higher among basket samples compared to ground collections (wire basket diversity = 5.25 vs. ground collection diversity = 2.45, P = 0.011). Soft-boned salmonids ( Oncorhynchus spp. ), American shad ( Alosa sapidissima ), and mountain whitefish ( Prosopium williamsoni ) were probably underrepresented in collections obtained from the ground. Study results suggest that baskets provide a better method for assessing osprey diet than other indirect methods. These findings augment available osprey food-habits information and provide additional biological and ecological information to better assess potential impacts of various environmental contaminants on nesting ospreys.

Oregon, Washington↗

USGS2013

Seasonal comparison of aquatic macroinvertebrate assemblages in a flooded coastal freshwater marsh

Marsh flooding and drying may be important factors affecting aquatic macroinvertebrate density and distribution in coastal freshwater marshes. Limited availability of water as a result of drying in emergent marsh may decrease density, taxonomic diversity, and taxa richness. The principal objectives of this study are to characterize the seasonal aquatic macroinvertebrate assemblage in a freshwater emergent marsh and compare aquatic macroinvertebrate species composition, density, and taxonomic diversity to that of freshwater marsh ponds. We hypothesize that 1) freshwater emergent marsh has lower seasonal density and taxonomic diversity compared to that of freshwater marsh ponds; and 2) freshwater emergent marsh has lower taxa richness than freshwater marsh ponds. Seasonal aquatic macroinvertebrate density in freshwater emergent marsh ranged from 0 organisms/m 2 (summer 2009) to 91.1 ± 20.53 organisms/m 2 (mean ± SE; spring 2009). Density in spring was higher than in all other seasons. Taxonomic diversity did not differ and there were no unique species in the freshwater emergent marsh. Our data only partially support our first hypothesis as aquatic macroinvertebrate density and taxonomic diversity between freshwater emergent marsh and ponds did not differ in spring, fall, and winter but ponds supported higher macroinvertebrate densities than freshwater emergent marsh during summer. However, our data did not support our second hypothesis as taxa richness between freshwater emergent marsh and ponds did not statistically differ.

Louisiana↗

USGS2019

Plant and insect herbivore community variation across the Paleocene–Eocene boundary in the Hanna Basin, southeastern Wyoming

Ecosystem function and stability are highly affected by internal and external stressors. Utilizing paleobotanical data gives insight into the evolutionary processes an ecosystem undergoes across long periods of time, allowing for a more complete understanding of how plant and insect herbivore communities are affected by ecosystem imbalance. To study how plant and insect herbivore communities change during times of disturbance, we quantified community turnover across the Paleocene–Eocene boundary in the Hanna Basin, southeastern Wyoming. This particular location is unlike other nearby Laramide basins because it has an abundance of late Paleocene and Eocene coal and carbonaceous shales and paucity of well-developed paleosols, suggesting perpetually high water availability. We sampled approximately 800 semi-intact dicot leaves from five stratigraphic levels, one of which occurs late in the Paleocene–Eocene thermal maximum (PETM). Field collections were supplemented with specimens at the Denver Museum of Nature & Science. Fossil leaves were classified into morphospecies and herbivore damage was documented for each leaf. We tested for changes in plant and insect herbivore damage diversity using rarefaction and community composition using non-metric multidimensional scaling ordinations. We also documented changes in depositional environment at each stratigraphic level to better contextualize the environment of the basin. Plant diversity was highest during the mid-late Paleocene and decreased into the Eocene, whereas damage diversity was highest at the sites with low plant diversity. Plant communities significantly changed during the late PETM and do not return to pre-PETM composition. Insect herbivore communities also changed during the PETM, but, unlike plant communities, rebound to their pre-PETM structure. These results suggest that insect herbivore communities responded more strongly to plant community composition than to the diversity of species present.

Wyoming↗

USGS1998

Effects of landscape composition and wetland fragmentation on frog and toad abundance and species richness in Iowa and Wisconsin, USA [abstract]

We examined the relationships between anuran diversity and landscape features in the Upper Midwestern United States. Anuran relative abundance and species richness were measured using data collected by Wisconsin and Iowa state calling surveys conducted from 1990-1995. Landscape features surrounding survey points were determined using National Wetland Inventory and Wisconsin Wetland Inventory maps. We tested several hypotheses suggested by the literature. We hypothesized that the relative abundance and species richness of anurans that breed in ephemeral wetlands is positively correlated with the surrounding area of temporary wetlands and emergent wetlands. We hypothesized that the relative abundance and species richness of anurans is positively correlated with patch diversity and wetland edges, in the absence of local fragmentation effects. We hypothesized that the relative abundance and species richness of anurans is positively associated with forests but negatively associated with agriculture and urban areas. Our results show that the interspersion of different wetland types and the concomitant increase in wetland edge habitats were generally positive for frogs and toads and anuran abundance and diversity were generally higher in association with forests, especially forested wetlands. The presence of agriculture did not always depress frog and toad populations or diversity; some species were associated with agricultural landscapes. The two states differed in how anurans were associated with landscape features like lakes and permanent wetlands. We found that frog and toad relative abundance and diversity were lower when urban areas were present. Managers can use models like ours, generated from landscape analyses, along with range maps and population trend analyses to get a comprehensive picture of the health of individual species and groups of species. Our models could be applied to the landscape as a whole, and used to predict species relative abundance and richness at new locations. Our work provides a framework for future experimental and intensive research on specific factors affecting the health of amphibians in the Upper Midwest.

Book chapter↗

USGS1976

Indexes associated with information theory in water quality

In many biological studies of water quality, a diversity index is calculated in 'bits per individual' by using Shannon's Approximation to Brillouin's Formula. Difficulties associated with such use of Shannon's Formula and its associated parameters are discussed. Recent research has indicated that diversity indexes can be improved if (a) biological sample collection and analysis are standardized prior to use for among various aquatic systems diversity indexes and their associated parameters, (b) the diversity index is measured in 'sits per individual' rather than the presently used unit of 'bits per individual,' and (c) the equation e=(H - H(min)/(H(max) - H(min)) is used to evaluate the uniformity of distribution of individuals among species in a sample where e equals relative evenness. Relative evenness, a ratio, is an expression in which Brillouin's and Shannon's Equations are not arbitrarily mixed. Values of diversity indexes using Brillouin and Shannon Formulas, both in bits and sits per individual, and relative evenness are given for 16 hypothetical samples.

Journal of the Water Pollution Control Federation↗

USGS2015

Evidence of low genetic variation and rare alleles in a bottlenecked endangered island endemic, the Lasan Teal (Anas laysanensis)

Genetic diversity is assumed to reflect the evolutionary potential and adaptability of populations, and thus quantifying the genetic diversity of endangered species is useful for recovery programs. In particular, if conservation strategies include reintroductions, periodic genetic assessments are useful to evaluate whether management efforts have resulted in the maximization or loss of genetic variation within populations over generations. In this study, we collected blood, feather, and tissue samples during 1999–2009 and quantified genetic diversity for a critically endangered waterfowl species endemic to the Hawaiian archipelago, the Laysan teal or duck (Anas laysanensis; n = 239 individual birds sampled). The last extant population of this species at Laysan Island was sourced in 2004–2005 for a ‘wild to wild’ translocation of 42 individuals for an experimental reintroduction to Midway Atoll. To inform future management strategies, we compared genetic diversity sampled from the source population (n = 133 Laysan birds) including 23 of Midway’s founders and offspring of the translocated population 2–5 years post release (n = 96 Midway birds). We attempted to identify polymorphic markers by screening nuclear microsatellite (N = 83) and intronic loci (N = 19), as well as the mitochondrial control region (mtDNA) for a subset of samples. Among 83 microsatellite loci screened, six were variable. We found low nuclear variation consistent with the species’ historical population bottlenecks and sequence variation was observed at a single intron locus. We detected no variation within the mtDNA. We found limited but similar estimates of allelic richness (2.58 alleles per locus) and heterozygosity within islands. Two rare alleles found in the Laysan Island source population were not present in the Midway translocated group, and a rare allele was discovered in an individual on Midway in 2008. We found similar genetic diversity and low, but statistically significant, levels of differentiation (0.6%) between island populations suggesting that genetic drift (as a result of translocation-induced population bottlenecking) has had a limited effect within five years post-release. Our results have utility for informing translocation and genetic management decisions.

Hawaii↗

USGS2012

A fine-scale assessment of using barriers to conserve native stream salmonids: a case study in Akokala Creek, Glacier National Park, USA

Biologists are often faced with the difficult decision in managing native salmonids of where and when to install barriers as a conservation action to prevent upstream invasion of nonnative fishes. However, fine-scale approaches to assess long-term persistence of populations within streams and watersheds chosen for isolation management are often lacking. We employed a spatially-explicit approach to evaluate stream habitat conditions, relative abundance, and genetic diversity of native westslope cutthroat trout (Oncorhynchus clarkii lewisi) within the Akokala Creek watershed in Glacier National Park- a population threatened by introgressive hybridization with nonnative rainbow trout (O. mykiss) from nearby sources. The systematic survey of 24 stream reaches showed broad overlap in fish population and suitable habitat characteristics among reaches and no natural barriers to fish migration were found. Analysis of population structure using 16 microsatellite loci showed modest amounts of genetic diversity among reaches, and that fish from Long Bow Creek were the only moderately distinct genetic group. We then used this information to assess the potential impacts of three barrier placement scenarios on long-term population persistence and genetic diversity. The two barrier placement scenarios in headwater areas generally failed to meet general persistence criteria for minimum population size (2,500 individuals, Ne = 500), maintenance of long-term genetic diversity (He), and no population subdivision. Conversely, placing a barrier near the stream mouth and selectively passing non-hybridized, migratory spawners entering Akokala Creek met all persistence criteria and may offer the best option to conserve native trout populations and life history diversity. Systematic, fine-scale stream habitat, fish distribution, and genetic assessments in streams chosen for barrier installation are needed in conjunction with broader scale assessments to understand the potential impacts of using barriers for conservation of native salmonid populations threatened by nonnative fish invasions.

Open Fish Science Journal↗

USGS2005

Forestry practices and aquatic biodiversity: Fish

In the Pacific Northwest, fish communities are found in a diverse array of aquatic habitats ranging from the large coastal rivers of the temperate rainforests, to the fragmented and sometimes ephemeral streams of the xeric interior basins, and high-elevation streams and lakes in the mountainous areas (Rieman et al. 2003). Only high-elevation lakes and streams isolated above barriers to fish passage remained historically devoid of fish because they were never invaded following Pleistocene glaciation (Smith 1981). Despite this widespread distribution and once great population abundances, taxonomic diversity of fishes in these forested systems is naturally lower than in aquatic habitats in the eastern U.S. (Reeves, Bisson, and Dambacher 1998). Interactions among factors that influence species richness in aquatic systems (e.g., basin size, long-term stability of habitat, and barriers to colonization; Smith 1981) continue to influence the occurrence and persistence of fishes in these systems today. Consequently, the larger low-elevation rivers and estuaries support the greatest variety of fish species. In the high-elevation tributary streams, fish communities are less complex because these aquatic systems were less climatically and geologically stable, and fish populations were smaller and more prone to local extirpation. Furthermore, barriers to fish passage inhibited dispersal and colonization (Smith 1981). Streams in forested landscapes generally support salmon and trout, Oncorhynchus spp., whitefish Prosopium spp., sculpins Cottus spp., suckers Catostomus spp., and minnows (Cyprinidae), but in some of the colder streams, chars (e.g., Salvelinus confluentus and Salvelinus malma ) and lampreys (Petromyzontidae)may also occur (Rieman et al. 2003). Although biodiversity defined in terms of fish species richness is low in the Pacific Northwest, intraspecific variability is high, and polytypic fish species are common in the diverse aquatic habitats of the region. For example, the salmonids in the coastal rivers and streams, and the larger interconnected streams, rivers, and lakes of the interior exhibit a variety of ecotypes and migratory life histories (Healey 1986; Trotter 1989; Larson and McIntire 1993; Northcote 1997). This life-history variation appears to be associated with adaptation to spatial and temporal variation in environment (e.g., Schaffer and Elson 1975; Carl and Healey 1984; Beacham and Murray 1987), and there is some evidence of the genetic heritability of life-history traits (Carl and Healey 1984; Gharrett and Smoker 1993; Hankin, Nicholas, and Downey 1993). Persistence of any level of biological organization (e.g., life-history type, population, metapopulation, subspecies, species, community) is related to the interaction of environmental and biological components, and intraspecific diversity is a means of spreading risk ( sensu den Boer 1968) of extirpation in dynamic environments (Gresswell 1999). Unfortunately, despite the broad distribution and extensive intraspecific diversity, persistence of native fishes is uncertain in the Pacific Northwest. Many populations of anadromous salmonids, once synonymous with vigorous biological communities throughout the region, are threatened with extinction (Nehlsen, Williams, and Lichatowich 1991; Frissell 1993; Thurow, Lee, and Rieman 1997). Furthermore, over half of the native taxa in the Columbia River Basin are either listed under the Endangered Species Act, are being considered for listing, or are deemed sensitive by the management agencies (Lee et al. 1997; Thurow, Lee, and Rieman 1997). Potamodromous species like bull trout Salvelinus confluentus are estimated to occur as strong populations in less than 5% of their potential range (Rieman, Lee, and Thurow 1997). Although not currently listed under the endangered species list, the coastal cutthroat trout Oncorhynchus clarki is managed as a sensitive species in Oregon and California (Hall, Bisson, and Gresswell 1997). Native non-game fishes have rarely been monitored, but populations of species such as large-scale suckers ( Catostomus macrocheilus ), squawfish ( Ptychocheilus umpquae ), and Pacific lamprey ( Lampetra tridentata ) also are declining in some drainages (Oregon Department of Fish and Wildlife, unpublished data).

Pacific Northwest↗

USGS2024

The National Ocean Biodiversity Strategy

President Biden has been clear that the ocean is central to life on Earth. As he has proclaimed, “the ocean powers millions of jobs; feeds and sustains us; and is a rejuvenating source of inspiration, exploration, and recreation.” The Biden-Harris Administration has worked hard to fulfill the President’s goal to protect and conserve at least 30% of U.S. waters by 2030. The ocean faces increased threats from warming, overfishing, increased acidity, and loss of biodiversity. It is now more important than ever to sustain the many benefits that the ocean, coasts, and Great Lakes provide, including food, a favorable climate, recreation, physical and mental health, and for many, a sense of cultural identity. Ocean life represents an irreplaceable heritage, the foundation of a habitable planet, and a vast trove of resources. Keeping our ocean healthy requires reliable information on the changing status of these living organisms, the drivers of biodiversity change, and options for effectively addressing those drivers. Over 2 million species are estimated to live in the ocean, yet only about 240,000 species have been described by scientists. Most of the ocean’s benefits result from those diverse species interacting with one another and the environment they create. To protect and conserve the ocean, we as a nation need to make better use of existing knowledge and prioritize acquiring new biodiversity knowledge to enable better policy and management decisions. The ability to monitor ocean species and habitats has expanded dramatically over the past decade, with innovations in technology, genomics, taxonomy, big data management and sharing, artificial intelligence, and machine learning. Yet large fractions of the U.S. ocean remain almost unknown. The National Ocean Biodiversity Strategy (strategy) reflects the urgent need to leverage these advances. The goals of this strategy must be guided by the nation’s diverse voices and ways of knowing, in order to maximize effective and equitable stewardship of the ocean’s diverse life and its benefits to people. The strategy is intended as a guiding document for government to advance three overarching goals: ● Goal 1: Drive delivery of ocean biodiversity knowledge at the national scale. Objectives include developing an Implementation Plan for achieving the strategy’s three goals; establishing a coordination mechanism to manage the implementation; and documenting gaps in biodiversity knowledge and the benefits of ocean biodiversity to people and economies. ● Goal 2: Strengthen tools and institutions to deliver ocean biodiversity knowledge. Objectives include establishing a robust information pipeline to support indicators and dynamic maps of ocean biodiversity, from the coasts to the deep sea. This pipeline should include expanded observing systems and comprehensive data management; science and technology solutions to accelerate the availability of biodiversity information; and plans to leverage previous investments to rebuild and expand the nation’s human capital and infrastructure to sustain foundational taxonomy and biodiversity science. ● Goal 3: Protect, conserve, restore, and sustainably use ocean biodiversity. Objectives include expanding the collection, delivery, and use of biodiversity knowledge to inform actions that advance ocean protection, conservation, restoration, and sustainable development. Government should lead in establishing and incentivizing diverse partnerships across scales and sectors to implement those actions and should educate and involve the public to discover and value the nation’s diverse ocean life. Achieving these goals will require commitments across society: new federal and private investments, coordination across sectors to address climate and equity challenges, and engagement of Indigenous Knowledge holders and frontline communities as full partners throughout planning and implementation. The Subcommittee on Ocean Science and Technology (SOST) IWG-Biodiversity will begin developing an Implementation Plan to describe and direct specific actions to implement the strategy. Successful implementation of the strategy will harmonize and expand collection and delivery of timely knowledge on ocean life to all of society. The strategy will also enable evidence-based management and protection of the ocean. Advancing the strategy will build human and institutional capital and partnerships that support both existing mandates and new needs to rebuild and sustain biodiversity, achieve healthy ocean ecosystems, and manage living resources. Implementing the strategy will deliver knowledge for monitoring, modeling, forecasting, and assessments that support food security, public health, and cultural values, and that more effectively protect, conserve, and restore nature.

Report↗

USGS2015

Drifting to oblivion? Rapid genetic differentiation in an endangered lizard following habitat fragmentation and drought

Aim The frequency and severity of habitat alterations and disturbance are predicted to increase in upcoming decades, and understanding how disturbance affects population integrity is paramount for adaptive management. Although rarely is population genetic sampling conducted at multiple time points, pre- and post-disturbance comparisons may provide one of the clearest methods to measure these impacts. We examined how genetic properties of the federally threatened Coachella Valley fringe-toed lizard ( Uma inornata ) responded to severe drought and habitat fragmentation across its range. Location Coachella Valley, California, USA. Methods We used 11 microsatellites to examine population genetic structure and diversity in 1996 and 2008, before and after a historic drought. We used Bayesian assignment methods and F-statistics to estimate genetic structure. We compared allelic richness across years to measure loss of genetic diversity and employed approximate Bayesian computing methods and heterozygote excess tests to explore the recent demographic history of populations. Finally, we compared effective population size across years and to abundance estimates to determine whether diversity remained low despite post-drought recovery. Results Genetic structure increased between sampling periods, likely as a result of population declines during the historic drought of the late 1990s–early 2000s, and habitat loss and fragmentation that precluded post-drought genetic rescue. Simulations supported recent demographic declines in 3 of 4 main preserves, and in one preserve, we detected significant loss of allelic richness. Effective population sizes were generally low across the range, with estimates ≤100 in most sites. Main conclusions Fragmentation and drought appear to have acted synergistically to induce genetic change over a short time frame. Progressive deterioration of connectivity, low N e and measurable loss of genetic diversity suggest that conservation efforts have not maintained the genetic integrity of this species. Genetic sampling over time can help evaluate population trends to guide management.

Diversity and Distributions↗