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At least 847 records · Page 47Linked to original sources
USGS2024

Detection of prions from spiked and free-ranging carnivore feces

Chronic wasting disease (CWD) is a highly contagious, fatal neurodegenerative disease caused by infectious prions (PrP CWD ) affecting wild and captive cervids. Although experimental feeding studies have demonstrated prions in feces of crows ( Corvus brachyrhynchos ), coyotes ( Canis latrans ), and cougars ( Puma concolor ), the role of scavengers and predators in CWD epidemiology remains poorly understood. Here we applied the real-time quaking-induced conversion (RT-QuIC) assay to detect PrP CWD in feces from cervid consumers, to advance surveillance approaches, which could be used to improve disease research and adaptive management of CWD. We assessed recovery and detection of PrP CWD by experimental spiking of PrP CWD into carnivore feces from 9 species sourced from CWD-free populations or captive facilities. We then applied this technique to detect PrP CWD from feces of predators and scavengers in free-ranging populations. Our results demonstrate that spiked PrP CWD is detectable from feces of free-ranging mammalian and avian carnivores using RT-QuIC. Results show that PrP CWD acquired in natural settings is detectable in feces from free-ranging carnivores, and that PrP CWD rates of detection in carnivore feces reflect relative prevalence estimates observed in the corresponding cervid populations. This study adapts an important diagnostic tool for CWD, allowing investigation of the epidemiology of CWD at the community-level.

Scientific Reports↗
USGS2025

Warming Alaskan rivers affect first-year growth in critical northern food fishes

Arctic and subarctic rivers are warming rapidly, with unknown consequences for migratory fishes and the human communities dependent on them. To date, few studies have provided a comprehensive assessment of possible climate change impacts on the hydrology and temperature of Arctic rivers at the regional scale, and even fewer have connected those changes to multiple fish species with input and guidance from Indigenous communities. We used climate, hydrologic, and fish-growth simulations of historical (1990–2021) and future (2034–2065) young-of-year (YOY) growth potential of Chinook salmon ( Oncorhynchus tshawytscha ) and Dolly Varden ( Salvelinus malma ) for seven river basins in the Arctic-Yukon-Kuskokwim (AYK) region of Alaska, USA and Yukon Territory, Canada. Historically, summer water temperatures of all river basins remained below thresholds regarded as deleterious for Chinook salmon (14.6 °C) and Dolly Varden (16 °C), even in the warmest years. However, by the mid-century, Chinook salmon growth was limited, with declines in the warmest years in most river basins. Conversely, Dolly Varden are expected to benefit, with a near-doubling in growth projections in all river basins. This suggests that there may be an increase in suitable habitat for Dolly Varden by mid-century. The results highlight species-specific consequences of climate change and can guide future research on refugia for these species of cultural and subsistence importance to Indigenous communities in the AYK region and throughout the Arctic.

Alaska↗
USGS2025

Greenhouse gas emissions from ditches in oil palm plantations on tropical peatlands in Malaysia

Tropical peatlands, which store 20% of global peat carbon, are increasingly threatened by conversion to alternative land-uses such as oil palm plantations, pulp wood plantations, crop growth or other economic activities. This transformation involves peatland drainage, which lowers water tables, exposes peat to oxygen, and alters greenhouse gas (GHG) emissions: increasing carbon dioxide (CO 2 ) and nitrous oxide (N 2 O) fluxes while reducing methane (CH 4 ) emissions from soils. However, drainage ditches created in the process may become significant sources of CH 4 due to anoxic conditions. This study quantified GHG fluxes from drainage ditches in Sarawak, Malaysia, through spatial sampling conducted during the daytime in the transitional period between the drier and wetter seasons using portable trace gas analyzers. Median fluxes were 0.19 g CH 4 m −2 d −1 , 17.1 g CO 2 m −2 d −1 , and − 0.12 mg N 2 O m −2 d −1 . Physical water parameters such as pH, oxygen concentration, temperature, and oxidation–reduction potential were found to be significant drivers of GHG fluxes. The median emissions from ditches in one hectare of land were 5.84 kg CO 2 ha −1 d −1 , 2.78 kg CH 4 as CO 2 eq ha −1 d −1 , and − 0.001 kg N 2 O as CO 2 eq ha −1 d −1 . These findings underscore the role of drainage ditches as CH 4 sources in tropical peatland agriculture, highlighting the need for further research into GHG management in these modified landscapes.

Scientific Reports↗
USGS2025

Interspecific interactions moderate direct effects of vegetation change resulting from prescribed fires

Savannas depend on frequent, low-intensity fires that shape animal and plant communities. These fires alter animal populations, movement, and habitat use. Here, we report on how fires in a longleaf pine (Pinus palustris) savanna affected small mammal microhabitat use via changes in competition and predation. We monitored small mammal populations and vegetation subjected to biennial prescribed fires and compared microhabitat use of three small mammal populations [hispid cotton rats (Sigmodon hispidus), cotton mice (Peromyscus gossypinus) and oldfield mice (Peromyscus polionotus)] in the presence and absence of mesocarnivores while accounting for changes in density and movement of each small mammal species. Densities of cotton rats varied greatly across years but were similar between predator exclosures and controls. However, frequency of use was greater in exclosures than in controls irrespective of vegetation characteristics, suggesting predation risk altered cotton rat microhabitat use. Conversely, higher relative abundance of cotton rats was associated with lower cotton mouse and oldfield mouse use, suggesting spatial separation in niche and indicating that cotton mice expand their realized niche following predation-induced declines of cotton rats associated with prescribed burn events. Our results contribute to a better understanding of pyrodiversity and how interspecific interactions can moderate effects of vegetation changes following prescribed fires.

Georgia↗
USGS2026

Drift and dispersion of silver carp (Hypophthalmichthys molitrix) eggs and larvae for hypothetical spawning scenarios in the Upper Mississippi River

Invasive carp pose ecological and economic risks to North American freshwater systems. This study uses the Fluvial Egg Drift Simulator to model the drift of invasive silver carp ( Hypophthalmichthys molitrix) eggs and larvae after hypothetical spawning in Pools 1–10 of the Upper Mississippi River. Although adult invasive carps have been detected in this region, no reproduction has been confirmed as of this publication. A total of 450 spawning scenarios were simulated, representing 5 water temperatures, 9 flows, and 10 spawning locations in the tailwaters of lock and dam structures. The study examined egg and larval positions at two key developmental stages: hatching and gas bladder inflation, when larvae seek nursery habitat. Under a wide variety of flow conditions and water temperatures, eggs spawned upstream from Lake Pepin (Pool 4) are likely to settle in the lake before hatching, possibly increasing mortality rates. Eggs that survive passage through Lake Pepin reach gas bladder inflation within the study area, except in scenarios with lower temperatures and higher flows. Conversely, larvae spawned downstream from Lake Pepin generally drift out of the study area before reaching gas bladder inflation, except in cases of higher temperatures and lower flows. These findings inform ichthyoplankton sampling strategies and management actions aimed at reducing invasive carp populations in areas likely to support recruitment.

Iowa, Minnesota, Wisconsin↗
USGS2015

Water from air: An overlooked source of moisture in arid and semiarid regions

Water drives the functioning of Earth’s arid and semiarid lands. Drylands can obtain water from sources other than precipitation, yet little is known about how non-rainfall water inputs influence dryland communities and their activity. In particular, water vapor adsorption – movement of atmospheric water vapor into soil when soil air is drier than the overlying air – likely occurs often in drylands, yet its effects on ecosystem processes are not known. By adding 18 O-enriched water vapor to the atmosphere of a closed system, we documented the conversion of water vapor to soil liquid water across a temperature range typical of arid ecosystems. This phenomenon rapidly increased soil moisture and stimulated microbial carbon (C) cycling, and the flux of water vapor to soil had a stronger impact than temperature on microbial activity. In a semiarid grassland, we also observed that non-rainfall water inputs stimulated microbial activity and C cycling. Together these data suggest that, during rain-free periods, atmospheric moisture in drylands may significantly contribute to variation in soil water content, thereby influencing ecosystem processes. The simple physical process of adsorption of water vapor to soil particles, forming liquid water, represents an overlooked but potentially important contributor to C cycling in drylands.

Scientific Reports↗
USGS2008

Development of a standard reference material for Cr(vi) in contaminated soil

Over the last several decades, considerable contamination by hexavalent chromium has resulted from the land disposal of Chromite Ore Processing Residue (COPR). COPR contains a number of hexavalent chromium-bearing compounds that were produced in high temperature industrial processes. Concern over the carcinogenic potential of this chromium species, and its environmental mobility, has resulted in efforts to remediate these waste sites. To provide support to analytical measurements of hexavalent chromium, a candidate National Institute of Standards and Technology (NIST) Standard Reference Material?? (SRM 2701), having a hexavalent chromium content of approximately 500 mg kg -1, has been developed using material collected from a waste site in Hudson County, New Jersey, USA. The collection, processing, preparation and preliminary physico-chemical characterization of the material are discussed. A two-phase multi-laboratory testing study was carried out to provide data on material homogeneity and to assess the stability of the material over the duration of the study. The study was designed to incorporate several United States Environmental Protection Agency (USEPA) determinative methods for hexavalent chromium, including Method 6800 which is based on speciated isotope dilution mass spectrometry (SIDMS), an approach which can account for chromium species inter-conversion during the extraction and measurement sequence. This journal is ?? The Royal Society of Chemistry 2008.

Journal of Analytical Atomic Spectrometry↗
USGS2024

Hair mercury isotopes, a noninvasive biomarker for dietary methylmercury exposure and biological uptake

Background . Fish and rice are the main dietary sources of methylmercury (MeHg); however, rice does not contain the same beneficial nutrients as fish, and these differences can impact the observed health effects of MeHg. Hence, it is important to validate a biomarker, which can distinguish among dietary MeHg sources. Methods . Mercury (Hg) stable isotopes were analyzed in hair samples from peripartum mothers in China ( n = 265). Associations between mass dependent fractionation (MDF) ( δ 202 Hg) and mass independent fractionation (MIF) ( Δ 199 Hg) (dependent variables) and dietary MeHg intake (independent variable) were investigated using multivariable regression models. Results . In adjusted models, hair Δ 199 Hg was positively correlated with serum omega-3 fatty acids (a biomarker for fish consumption) and negatively correlated with maternal rice MeHg intake, indicating MIF recorded in hair can be used to distinguish MeHg intake predominantly from fish versus rice. Conversely, in adjusted models, hair δ 202 Hg was not correlated with measures of dietary measures of MeHg intake. Instead, hair δ 202 Hg was strongly, negatively correlated with hair Hg, which explained 27–29% of the variability in hair δ 202 Hg. Conclusions . Our results indicated that hair Δ 199 Hg can be used to distinguish MeHg intake from fish versus rice. Results also suggested that lighter isotopes were preferentially accumulated in hair, potentially reflecting Hg binding to thiols ( i.e. , cysteine); however, more research is needed to elucidate this hypothesis. Broader impacts include 1) validation of a non-invasive biomarker to distinguish MeHg intake from rice versus fish, and 2) the potential to use Hg isotopes to investigate Hg binding in tissues.

Environmental Science: Processes & Impacts↗
USGS2001

Carbon dynamics within agricultural and native sites in the loess region of Western lowa

In order to quantify the historical changes in carbon storage that result from agricultural conversion, this study compared the carbon dynamics of two sites in the loess region of Iowa: a native prairie and a cropland. Field data were obtained to determine present-day carbon storage and its variability within a landscape (a stable ridgetop vs. eroding upper-midslope vs. depositional lower slope). Models were used to recreate the historical carbon budget of these sites and determine the cropland's potential to be a net CO2 source or sink, relative to the atmosphere. Regardless of slope position, the cropland site contains approximately half the amount of carbon as prairie. Variability in soil carbon storage within a site as a consequence of slope position is as large or larger (variations of 200-300%) than temporal variation (???200% at all slope positions). The most extreme difference in soil carbon storage between the cropland and prairie sites is found in the soil at the upper-midslope, which is the area of greatest erosion. The models estimate that 93-172% of the carbon in the original topsoil has been lost from the cropland's eroding midslope. Much of this carbon is derived from deeper soil horizons. Either a small sink or strong source of carbon to the atmosphere is created, depending on the fate of the eroded sediment and its associated carbon.

Global Change Biology↗
USGS2003

Temporal variation of energy reserves in mayfly nymphs ( Hexagenia spp.) from Lake St. Clair and western Erie

1. We analysed changes in energy reserves (lipid and glycogen) and length–weight relationships of burrowing mayflies ( Hexagenia spp.) in 1997–99 to compare an established population in Lake St Clair with a recovering population in western Lake Erie of the Laurentian Great Lakes. In addition, we measured changes in water temperature and potential food in both water columns and sediments. 2. Although overall mean values of lipid and glycogen levels of Hexagenia nymphs from Lake St Clair and western Lake Erie were not significantly different, there were differences in seasonal patterns between the two lakes. In Lake St Clair, levels were highest in early spring, declined throughout the year, and reached their lowest levels in fall during all 3 years of study. In contrast, levels in western Lake Erie were lower in spring, increased to a maximum in summer, then declined in fall. Seasonal patterns in length–weight relationships were similar to those for lipid and glycogen. 3. Total lipid as a percentage of dry weight did not increase with developmental stage of nymphs until just prior to metamorphosis and emergence from water. However, the major reserve lipid, triacylglycerols, increased systematically with development stage. In the final stage of development, triacylglycerols declined, probably as a result of energy consumption and its conversion to other biochemical components for metamorphosis and reproduction. 4. Indicators of potential food (algal fluorescence in the water column and chlorophyll a and chlorophyll a /phaeophytin ratio in sediments) suggest that Hexagenia in Lake St Clair have a food source that is benthic based, especially in early spring, whereas in western Lake Erie nymphs have a food source that is water column based and settles to the lake bottom during late spring and summer.

Freshwater Biology↗
USGS2002

Native American impacts on fire regimes of the California coastal ranges

Aim Native American burning impacts on California shrubland dominated landscapes are evaluated relative to the natural lightning fire potential for affecting landscape patterns. Location Focus was on the coastal ranges of central and southern California. Methods Potential patterns of Indian burning were evaluated based upon historical documents, ethnographic accounts, archaeological records and consideration of contemporary land management tactics. Patterns of vegetation distribution in this region were evaluated relative to environmental factors and the resilience of the dominant shrub vegetation to different fire frequencies. Results Lightning fire frequency in this region is one of the lowest in North America and the density of pre-Columbian populations was one of the highest. Shrublands dominate the landscape throughout most of the region. These woody communities have weak resilience to high fire frequency and are readily displaced by annual grasses and forbs under high fire frequency. Intact shrublands provided limited resources for native Americans and thus there was ample motivation for using fire to degrade this vegetation to an open mosaic of shrubland/grassland, not unlike the agropastoral modification of ecologically related shrublands by Holocene peoples in the Mediterranean Basin. Alien-dominated grasslands currently cover approximately one-quarter of the landscape and less than 1% of these grasslands have a significant native grass presence. Ecological studies in the Californian coastal ranges have failed to uncover any clear soil or climate factors explaining grassland and shrubland distribution patterns. Main conclusions Coastal ranges of California were regions of high Indian density and low frequency of lightning fires. The natural vegetation dominants on this landscape are shrubland vegetation that often form dense impenetrable stands with limited resources for Native Americans. Natural fire frequencies are not high enough to maintain these landscapes in habitable mixtures of shrublands and grasslands but such landscape mosaics are readily produced with additional human subsidy of ignitions. It is hypothesized that a substantial fraction of the landscape was type converted from shrubland to grassland and much of the landscape that underwent such type conversion has either been maintained by Euro-American land management practices or resisted recolonization of native shrublands. It appears that these patterns are disturbance dependent and result from anthropogenic alteration of landscapes initiated by Native Americans and sustained and expanded upon by Euro-American settlers.

Journal of Biogeography↗
USGS2001

On the decline of the Rusty Blackbird and the use of ornithological literature to document long-term population trends

Unlike most North American blackbirds, Rusty Blackbirds ( Euphagus carolensis ) have shown steep population declines. Declines of approximately 90% are indicated for three recent decades from the Breeding Bird Survey, Christmas Bird Counts, and Quebec Checklist Program. Analyses of abundance classifications in bird distribution books and annotated checklists reveal an overlooked but long-term decline dating back to at least the early part of this century. Rusty Blackbirds were described as very common to abundant in 56% of the pre-1920 published accounts, 19% of the 1921–1950 accounts, and only 7% of the post-1950 accounts. Rusty Blackbirds were described as uncommon in none of the pre-1950 accounts, 18% of the 1951–1980 accounts, and 43% of the post-1980 accounts. A similar pattern was found for analyses based on local checklists. Destruction of wooded wetlands on wintering grounds, acid precipitation, and the conversion of boreal forest wetlands could have contributed to these declines. Systematic analysis of regional guides and checklists provides a valuable tool for examining large-scale and long-term population changes in birds.

Conservation Biology↗
USGS2000

Radar structure of earthquake-induced, coastal landslides in Anchorage, Alaska

Ground-penetrating radar (GPR) was used to investigate the internal structure of two large landslides in Anchorage, Alaska that resulted from the great 1964 earthquake. The Government Hill and Turnagain Heights landslides occurred in similar stratigraphic and geographic settings, yet the style of ground deformation is different at each site. GPR data are compared with previous investigations and are shown, under certain conditions, to have utility in the identification of ancient landslides. Reflection surveys accurately reproduced the subsurface geometry of horst and graben structures and imaged finer scale features such as ground cracks and fissures. Where more complete disintegration of the bluff occurred, GPR reflections from within the slide mass are generally chaotic and include no recognizable evidence of the original stratigraphy. Common midpoint surveys estimated GPR velocity in the sediment and allowed the conversion of travel times to depths.

Alaska↗
USGS2003

Restoring forbs for sage grouse habitat: Fire, microsites, and establishment methods

The decline and range reduction of sage grouse populations are primarily due to permanent loss and degradation of sagebrush–grassland habitat. Several studies have shown that sage grouse productivity may be limited by the availability of certain preferred highly nutritious forb species that have also declined within sagebrush ecosystems of the Intermountain West, U.S.A. The purpose of this study was to determine the suitability of three species of forbs for revegetation projects where improving sage grouse habitat is a goal. Species suitability was determined by evaluating the emergence, survival, and reproduction of Crepis modocensis , C. occidentalis , and Astragalus purshii in response to method of establishment (seeding or transplanting), site preparation treatment (burned or unburned), and microsite (mound or interspace) in an Artemisia tridentata ssp. wyomingensis vegetation association in south central Oregon. For seeded plants A. purshii had the lowest emergence (8%) of all three species. Both seeded Crepis species had similar overall emergence (38%). Significantly more Crepis seedlings emerged from shrub mounds in unburned areas (50%) than in any other fire-by-microsite treatment (33 to 36%). Approximately 10% more Crepis seedlings survived in mounds compared with interspaces. Nearly twice as many emerging Crepis seedlings survived in the burned areas as opposed to unburned areas ( p < 0.01). This resulted in more plant establishment in burned mounds despite higher emergence in unburned mounds. Astragalus purshii seedlings also survived better in burned areas ( p = 0.06) but had no differential response to microsite. Fire enhanced survival of both Crepis and A. purshii transplants ( p = 0.08 and p = 0.001). We believe additional research is needed to improve A. purshii emergence before it will become an effective plant for restoring sage grouse habitat. Conversely, we conclude that these Crepis species provide a viable revegetation option for improving sage grouse habitat in south central Oregon.

Oregon↗
USGS2003

Interactions between dissolved organic matter and mercury in the Florida Everglades

Experiments were conducted using organic matter isolated from various surface waters in the Florida Everglades to study the interactions between dissolved organic matter (DOM) and Hg (II). Conditional distribution coefficients ( ), obtained using an equilibriurn dialysis ligand exchange method, were strongly affected by the Hg/DOM concentration ratio. Very strong interactions ( = 10 L kg -1 ), indicative of Hg-thiol bonds, were observed at Hg/DOM ratios below approximately 1 g Hg per mg DOM. Above approximately 10 g Hg per mg DOM much lower values ( L kg -1 ) were obtained. DOM-Hg interactions were also studied by HgS (log K ) dissolution and precipitation experiments. In the dissolution experiments, a significant amount of Hg was released from cinnabar in the presence of DOM, suggesting strong interactions. Conversely, precipitation of HgS was strongly inhibited in the presence of low concentrations ( 3 mg C/L) of DOM. In both the dissolution and precipitation experiments, organic matter rich in aromatic moities was more reactive with HgS than less aromatic fractions and sulfur-containing model compounds. These results suggest that DOM can influence the geochemistry of inorganic complexes of Hg in the Everglades, especially HgS, by strong Hg-DOM binding and colloidal stabilization.

Florida↗
USGS1994

Piezometer performance at Wildlife liquefaction site, California

In response to an urgent need for field data from instrumented liquefaction sites, the U.S. Geological Survey in 1982 selected and instrumented a site in southern California called the Wildlife site. Two accelerometers (one at ground surface and one at a depth of 7.5 m) and six electrical pore‐pressure transducers (five in a liquefiable silty sand layer) were placed at the site. The November 1987 Superstition Hills earthquake triggered sand boils and the desired instrumental response by generating excess pore‐water pressure that approximately equaled the initial effective overburden pressure. These records are the first from a field site to trace ground motions and pore pressures through the entire liquefaction process. Because pore pressure continued to rise after most of the seismic energy had propagated through the site, questions about the fidelity of the pore‐pressure records have been raised. Because of the importance of the Wildlife records, we reexamine pertinent aspects of the instruments and their placement, review their 1987 response, evaluate and respond to criticisms by Hushmand et al. (1992a, 1992b), and examine analyses of the records by other investigators that are pertinent to an evaluation of the fidelity of the piezometer records. This review concludes that no data or analyses have been developed that convincingly demonstrate that the pore‐pressure piezometers responded incorrectly. Conversely, an analysis by Zeghal and Elgamal (1994) provides strong evidence that the piezometers responded with a high degree of fidelity.

California↗
USGS2021

Incorporating water quality analysis into navigation assessments as demonstrated in the Mississippi River Basin

A description of historical and ambient water quality conditions is often required as part of navigational studies. This paper describes a series of tools developed by the USGS that can aid navigation managers in developing water quality assessments. The tools use R, a statistical software program, and provide methods to retrieve historical streamflow and water quality data, summarize observations, model concentrations and fluxes, and estimate seasonal, annual, and decadal trends. The utility of these tools is demonstrated by providing an analysis of the seasonal variability and long-term trends of nitrate plus nitrite, orthophosphate, and suspended sediment concentrations and fluxes at nine sites in the Mississippi River Basin. Trends in annual mean concentration and flux showed fairly stable nitrate plus nitrite at most of the nine sites, with increases in the Upper Mississippi and Missouri Rivers and decreases on the Illinois River over a 40-year period beginning in 1980. Orthophosphate concentration or flux increased at almost all sites over a similar time period. Conversely, a concurrent steady decline in suspended sediment concentrations and fluxes was noted at sites throughout the basin.

Mississippi River Basin↗
USGS2021

Shift of potential natural vegetation against global climate change under historical, current and future scenarios

Potential natural vegetation (PNV), the final successional stage of vegetation, plays a key role in ecological restoration, the design of nature reserves, and development of agriculture and livestock production. Meteorological data from historical and current periods including the last inter-glacial (LIG), last glacial maximum (LGM), mid Holocene (MH) periods and the present day (PD), plus derived data from 2050 and 2070, in conjunction with the Comprehensive and Sequential Classification System (CSCS) model, were used to classify global PNV. The 42 classes of global PNV were regrouped into 10 groups to facilitate analysis of spatial changes. Finally, spatio-temporal patterns and successional processes of global PNV as well as the response to climate changes were analysed. Our study made the following five conclusions. (1) Only one missing class (IA1 frigid-extrarid frigid desert, alpine desert) arose in periods of LIG, MH, 2050, and 2070 for global PNV. (2) The frigid-arid groups were mainly distributed in higher latitudes and elevations, but temperate-humid groups and tropical-perhumid groups occurred in middle and low latitudes, respectively. Temperate zonal forest steppe, warm desert, savanna and tropical zonal forest steppe increased, while six other groups decreased. (3) The conversion from temperate zonal forest steppe to tundra and alpine steppe from LIG to LGM occupied the largest area, indicating a drastic shift in climate and the associated response of terrestrial vegetation sensitive to climate change. (4) The CSCS could be used to simulate the long-term succession of global PNV. (5) As a consequence of global warming, forests shifted to the northern hemisphere and Tibet, areas with much higher latitude and elevation. The PNV groups with greater shift distance revealed the more serious effects of global climate change on vegetation.

Rangeland Journal↗