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USGS2020

Assessing native fish restoration potential in Catoctin Mountain Park

Biological conservation is a fundamental purpose of the National Park system, and Catoctin Mountain Park (CATO) supports high-quality habitat for native fishes in the headwaters of the Chesapeake Bay watershed in eastern North America. However, native Blue Ridge sculpin ( Cottus caeruleomentum ) have been extirpated in Big Hunting Creek above Cunningham Falls in CATO. Prior research indicates that infection by the fungal-like protist Dermocystidium is a likely cause for the extirpation, but elevated stream temperatures also have been observed in the study area, and it remains unknown whether thermal stress may exacerbate infections or otherwise limit habitat suitability for fishes in CATO. The purpose of this study was to quantify spatial variation in summer stream temperatures and to evaluate the effects of temperature on sculpin growth rates and susceptibility to Dermocystidium infection. We used observational and experimental methods to address these objectives. First, we deployed stream temperature gages at 10 sites throughout the study area to assess hourly and daily temperatures during the summer of 2019. Second, we conducted an in situ fish enclosure experiment at five of the temperature sites to assess fish growth and susceptibility to Dermocystidium infection over a 45-day exposure period. For this experiment we collected sculpin from a stream in CATO that supports a robust population of Blue Ridge sculpin (Owens Creek) and held them in quarantine for 50 days in the Experimental Stream Laboratory at the U.S. Geological Survey (USGS) Leetown Science Center. Pre-exposure histopathology confirmed the absence of Dermocystidium infection prior to the introduction of fish into experimental enclosures. We found that stream temperatures were warmer where sculpin have been extirpated than elsewhere in CATO where sculpin persist. However, the fish enclosure experiment revealed a positive effect of temperature on fish growth, suggesting that increased food availability and foraging rates compensated for increased metabolic demands in the warmest sites. Moreover, fish held in enclosures did not develop Dermocystidium infection. Our results therefore suggest that current environmental conditions in upper Big Hunting Creek may be suitable for Blue Ridge sculpin reintroduction, and this could ultimately lead to sportfishing opportunities by increasing the forage base for native brook trout ( Salvelinus fontinalis ).

Maryland↗

USGS2001

Influence of reactive sulfide (AVS) and supplementary food on Ag, Cd and Zn bioaccumulation in the marine polychaete Neanthes arenaceodentata

A laboratory bioassay determined the relative contribution of various pathways of Ag, Cd and Zn bioaccumulation in the marine polychaete Neanthes arenaceodentata exposed to moderately contaminated sediments. Juvenile worms were exposed for 25 d to experimental sediments containing 5 different reactive sulfide (acid volatile sulfides, AVS) concentrations (1 to 30 ??mol g-1), but with constant Ag, Cd, and Zn concentrations of 0.1, 0.1 and 7 ??mol g-1, respectively. The sediments were supplemented with contaminated food (TetraMin??) containing 3 levels of Ag-Cd-Zn (uncontaminated, 1?? or 5??1 metal concentrations in the contaminated sediment). The results suggest that bioaccumulation of Ag, Cd and Zn in the worms occurred predominantly from ingestion of contaminated sediments and contaminated supplementary food. AVS or dissolved metals (in porewater and overlying water) had a minor effect on bioaccumulation of the 3 metals in most of the treatments. The contribution to uptake from the dissolved source was most important in the most oxic sediments, with maximum contributions of 8% for Ag, 30% for Cd and 20% for Zn bioaccumulation. Sediment bioassays where uncontaminated supplemental food is added could seriously underestimate metal exposures in an equilibrated system; N. arenaceodentata feeding on uncontaminated food would be exposed to 40-60% less metal than if the food source was equilibrated (as occurs in nature). Overall, the results show that pathways of metal exposure are dynamically linked in contaminated sediments and shift as external geochemical characteristics and internal biological attributes vary.

Marine Ecology Progress Series↗

USGS2002

32 - Rock failure and earthquakes

This chapter summarizes experimental observations and related theoretical developments of faulted and intact rock properties related to earthquake nucleation, failure and dynamic slip. We will be concerned primarily with earthquakes occurring in the brittle crust. Intermediate and deep-focus earthquakes have unique mechanical considerations that are discussed in Section 7 . We focus on repeatable laboratory observations and their direct implications for fault strength and stability. Important results that may be new, incomplete or controversial have also been included. To distinguish the well-established findings from others, the latter appear in “new and provisional results” sections.

International Geophysics↗

USGS2005

Direct measurement of methane hydrate composition along the hydrate equilibrium boundary

The composition of methane hydrate, namely n w for CH 4 · n w H 2 O, was directly measured along the hydrate equilibrium boundary under conditions of excess methane gas. Pressure and temperature conditions ranged from 1.9 to 9.7 MPa and 263 to 285 K. Within experimental error, there is no change in hydrate composition with increasing pressure along the equilibrium boundary, but n w may show a slight systematic decrease away from this boundary. A hydrate stoichiometry of n w = 5.81−6.10 H 2 O describes the entire range of measured values, with an average composition of CH 4 ·5.99(±0.07)H 2 O along the equilibrium boundary. These results, consistent with previously measured values, are discussed with respect to the widely ranging values obtained by thermodynamic analysis. The relatively constant composition of methane hydrate over the geologically relevant pressure and temperature range investigated suggests that in situ methane hydrate compositions may be estimated with some confidence.

Journal of Physical Chemistry B↗

USGS1982

Furunculosis in brook trout: Infection by contact exposure

In juvenile brook trout (Salvelinus fontinalis) challenged by applying about 10 9 virulent Aeromonas salmonicida cells to an abraded area along the lateral line, or held in aquarium water containing about 10 5 cells per milliliter, mortalities were 50 and 60%, respectively, within 7 days after exposure. Neither feeding the bacterium to the fish nor applying it directly to the gills caused systemic bacterial infection. Two consistent experimental challenges were developed for inducing furunculosis in juvenile brook trout: (1) 15‐min contact (bath) exposures of trout to about 10 6 A. salmonicida cells per milliliter of spring water, and (2) 60‐s dip exposures of the fish to 10 9 A. salmonicida cells per milliliter. These challenge procedures produced 70‐100% and 74‐88% mortality, respectively, within 14 days after exposure. Results obtained with a strain of brook trout from Owhi Lake, Washington, by the dip exposure method were affected by neither the age of the fish (up to 1 year) nor the source of the population. The challenge was also effective for Atlantic salmon (Salmo salar) but not for rainbow trout (S. gairdneri).

Progressive Fish-Culturist↗

USGS1987

Community models for wildlife impact assessment: a review of concepts and approaches

The first two sections of this paper are concerned with defining and bounding communities, and describing those attributes of the community that are quantifiable and suitable for wildlife impact assessment purposes. Prior to the development or use of a community model, it is important to have a clear understanding of the concept of a community and a knowledge of the types of community attributes that can serve as outputs for the development of models. Clearly defined, unambiguous model outputs are essential for three reasons: (1) to ensure that the measured community attributes relate to the wildlife resource objectives of the study; (2) to allow testing of the outputs in experimental studies, to determine accuracy, and to allow for improvements based on such testing; and (3) to enable others to clearly understand the community attribute that has been measured. The third section of this paper described input variables that may be used to predict various community attributes. These input variables do not include direct measures of wildlife populations. Most impact assessments involve projects that result in drastic changes in habitat, such as changes in land use, vegetation, or available area. Therefore, the model input variables described in this section deal primarily with habitat related features. Several existing community models are described in the fourth section of this paper. A general description of each model is provided, including the nature of the input variables and the model output. The logic and assumptions of each model are discussed, along with data requirements needed to use the model. The fifth section provides guidance on the selection and development of community models. Identification of the community attribute that is of concern will determine the type of model most suitable for a particular application. This section provides guidelines on selected an existing model, as well as a discussion of the major steps to be followed in modifying an existing model or developing a new model. Considerations associated with the use of community models with the Habitat Evaluation Procedures are also discussed. The final section of the paper summarizes major findings of interest to field biologists and provides recommendations concerning the implementation of selected concepts in wildlife community analyses.

Report↗

USGS2001

Chemical weathering of the Panola Granite: Solute and regolith elemental fluxes and the weathering rate of biotite

Present-day elemental and mineral weathering rates based on solute fluxes are compared quantitatively to past long-term rates determined from solid-state elemental fractionation in a saprolitic granite regolith at Panola, Georgia, USA. Saturated fluid flow across a low-permeability kaolin duripan controls the rate of steady-state unsaturated flow in the underlying saprolite. Water and Cl mass balances and experimental conductivities produce a minimum fluid flux density of 8x10 -2 m yr -1 and a fluid residence time of 12 years. Solute Si flux, based on pore water concentrations and infiltration rates, is 27 mmoles yr -1 , compared to a long-term flux rate of 17 mmoles yr -1 , based on regolith Si loss and reported 36 Cl dating of the regolith surface. Similarities in short- and long-term fluxes imply that parameters influencing silicate weathering, including precipitation, temperature, and vegetative cover, while not necessarily constant, have not significantly impacted Si leaching rates during the last several hundred thousand years. Linear decreases in solid-state Mg with decreasing regolith depth permit the calculation of the long-term biotite weathering rate under isovolumetric steady-state weathering conditions. A rate constant of 3x10 -17 moles m -2 s -1 is up to 5 orders of magnitude slower than that reported for experimental dissolution of biotite, implying very different reaction kinetics during natural weathering. Short-term biotite weathering fails to produce expected increases in solute Mg and K concentrations with increasing depth and fluid residence times in the regolith. This discrepancy indicates that ion exchange disequilibrium and open-system biologic uptake in an aggrading forest ecosystem are of sufficient magnitudes to overwhelm solute fluxes resulting from biotite weathering.

Georgia↗

USGS2007

Effects of intermittent flow and irradiance level on back reef Porites corals at elevated seawater temperatures

Corals inhabiting shallow back reef habitats are often simultaneously exposed to elevated seawater temperatures and high irradiance levels, conditions known to cause coral bleaching. Water flow in many tropical back reef systems is tidally influenced, resulting in semi-diurnal or diurnal flow patterns. Controlled experiments were conducted to test effects of semi-diurnally intermittent water flow on photoinhibition and bleaching of the corals Porites lobata and P. cylindrica kept at elevated seawater temperatures and different irradiance levels. All coral colonies were collected from a shallow back reef pool on Ofu Island, American Samoa. In the high irradiance experiments, photoinhibition and bleaching were less for both species in the intermittent high-low flow treatment than in the constant low flow treatment. In the low irradiance experiments, there were no differences in photoinhibition or bleaching for either species between the flow treatments, despite continuously elevated seawater temperatures. These results suggest that intermittent flow associated with semi-diurnal tides, and low irradiances caused by turbidity or shading, may reduce photoinhibition and bleaching of back reef corals during warming events. ?? 2006 Elsevier B.V. All rights reserved.

Journal of Experimental Marine Biology and Ecology↗

USGS2002

United States streamflow probabilities and uncertainties based on anticipated El Niño, water year 2003

During the course of spring and summer 2002, tropical sea-surface temperatures in the eastern Pacific Ocean have warmed and the wind and pressure fields have shifted, so that by August, there was considerable confidence that water year (October–September) 2003 will be characterized by a weak to mild El Niño climate (http://iri.columbia.edu/climate/ENSO/currentinfo/archive/200208/QuickLook.html). At the same time, the Pacific Decadal Oscillation pattern of sea-surface temperatures in the North Pacific (Mantua et al., 1997) has shifted towards a more neutral state than in the past several years and will not be considered in detail here. Previous studies of the connections between El Niños and streamflow in the United States by the authors (e.g., Redmond and Koch, 1991; Cayan and Webb, 1992; Cayan et al., 1999; Dettinger et al., 2001) indicate that El Niño conditions influence historical streamflow distributions to varying extents. These conclusions, along with those of other researchers, suggest that foreknowledge of El Niño conditions can inform seasonal outlooks for streamflows throughout the Americas and elsewhere. For example, Dettinger et al. (2001), as distilled here into Fig. 1, showed that historical annual streamflow totals have correlated negatively with the Southern Oscillation Index (SOI, which is negatively associated with El Niños) in the U.S. Southwest as well as in the subtropics of South America, and correlate positively in the U.S. Northwest, in much of tropical South America, and, perhaps, in southernmost South America. These interhemispheric bands of El Niño influence are a matter of considerable concern for water- and land-managers throughout the Americas, and expand upon results from previous studies in the western United States (e.g., Redmond and Koch, 1991; Cayan and Webb, 1992), including a recent analysis by Pizarro and Lall (2002), where water availability and hydrologic extremes are particularly pressing issues.

Experimental Long-Lead Forecast Bulletin↗

USGS2020

Removal of chronic Mycoplasma ovipneumoniae carrier ewes eliminates pneumonia in a bighorn sheep population

Chronic pathogen carriage is one mechanism that allows diseases to persist in populations. We hypothesized that persistent or recurrent pneumonia in bighorn sheep ( Ovis canadensis ) populations may be caused by chronic carriers of Mycoplasma ovipneumoniae ( Mo ). Our experimental approach allowed us to address a conservation need while investigating the role of chronic carriage in disease persistence. We tested our hypothesis in two bighorn sheep populations in South Dakota, USA. We identified and removed Mo chronic carriers from the Custer State Park (treatment) population. Simultaneously, we identified carriers but did not remove them from the Rapid City population (control). We predicted removal would result in decreased pneumonia, mortality, and Mo prevalence. Both population ranges had similar habitat and predator communities but were sufficiently isolated to preclude intermixing. We classified chronic carriers as adults that consistently tested positive for Mo carriage over a 20‐month sampling period ( n = 2 in the treatment population; n = 2 in control population). We failed to detect Mo or pneumonia in the treatment population after chronic carrier removal, while both remained in the control. Mortality hazard for lambs was reduced by 72% in the treatment population relative to the control (CI = 36%, 91%). There was also a 41% reduction in adult mortality hazard attributable to the treatment, although this was not statistically significant (CI = 82% reduction, 34% increase). Synthesis and Applications : These results support the hypothesis that Mo is a primary causative agent of persistent or recurrent respiratory disease in bighorn sheep populations and can be maintained by a few chronic carriers. Our findings provide direction for future research and management actions aimed at controlling pneumonia in wild sheep and may apply to other diseases.

South Dakota↗

USGS1988

The solubility of noble gases in crude oil at 25-100°C

The solubility of the noble gases He, Ne, Ar, Kr and Xe was measured in two typical crude oils at temperatures of 25–100°C. The oil samples were obtained from the Elk Hills oil field located in southern San Joaquin Valley, California. The experimental procedure consisted of placing a known amount of gas with a known volume of crude oil in a stainless steel hydrothermal pressure vessel. The vessel was housed inside an oven and the entire unit rotates providing continuous mixing. The amount of gas dissolved in oil at a measured temperature and partial pressure of gas was used to calculate the solubility constants for these gases. Results show that the solubility of He and Ne in both oils is approximately the same; solubility then increases with atomic mass, with the solubility of Xe at 25°C being two orders of magnitude higher than that of He. The gas solubilities are somewhat higher in the lower density (higher API gravity) oil. The solubility of Ar is approximately constant in the range of temperatures of this study. The solubilities of He and Ne increase, but those of Kr and Xe decrease with increasing temperatures. Solubilities of noble gases in crude oil are significantly higher than their solubilities in water. For example, the solubilities of He and Xe at 25°C in the light oil of this study are, respectively, 3 and 24 times higher than their solubilities in pure water, and they are 15 and 300 times higher than in a brine with a salinity of 350,000 mg/l dissolved solids. These large and variable differences in the solubilities of noble gases in oil and water indicate that, in sedimentary basins with oil, these gases must be partitioned between oil, water and natural gas before they are used to deduce the origin and residence time of these fluids.

Applied Geochemistry↗

USGS2013

Plasticity of parental care under the risk of predation: how much should parents reduce care?

Predation can be an important agent of natural selection shaping parental care behaviours, and can also favour behavioural plasticity. Parent birds often decrease the rate that they visit the nest to provision offspring when perceived risk is high. Yet, the plasticity of such responses may differ among species as a function of either their relative risk of predation, or the mean rate of provisioning. Here, we report parental provisioning responses to experimental increases in the perceived risk of predation. We tested responses of 10 species of bird in north temperate Arizona and subtropical Argentina that differed in their ambient risk of predation. All species decreased provisioning rates in response to the nest predator but not to a control. However, provisioning rates decreased more in species that had greater ambient risk of predation on natural nests. These results support theoretical predictions that the extent of plasticity of a trait that is sensitive to nest predation risk should vary among species in accordance with predation risk.

Biology Letters↗

USGS2020

Altered climate leads to positive density‐dependent feedbacks in a tropical wet forest

Climate change is predicted to result in warmer and drier Neotropical forests relative to current conditions. Negative density‐dependent feedbacks, mediated by natural enemies, are key to maintaining the high diversity of tree species found in the tropics, yet we have little understanding of how projected changes in climate are likely to affect these critical controls. Over 3 years, we evaluated the effects of a natural drought and in situ experimental warming on density‐dependent feedbacks on seedling demography in a wet tropical forest in Puerto Rico. In the +4°C warming treatment, we found that seedling survival increased with increasing density of the same species (conspecific). These positive density‐dependent feedbacks were not associated with a decrease in aboveground natural enemy pressure. If positive density‐dependent feedbacks are not transient, the diversity of tropical wet forests, which may rely on negative density dependence to drive diversity, could decline in a future warmer, drier world.

Puerto Rico↗

USGS2016

Antemortem detection of chronic wasting disease prions in nasal brush collections and rectal biopsies from white-tailed deer by real time quaking-induced conversion

Chronic wasting disease (CWD), a transmissible spongiform encephalopathy of cervids, was first documented nearly 50 years ago in Colorado and Wyoming and has since spread to cervids in 23 states, two Canadian provinces, and the Republic of Korea. The expansion of this disease makes the development of sensitive diagnostic assays and antemortem sampling techniques crucial for the mitigation of its spread; this is especially true in cases of relocation/reintroduction of farmed or free-ranging deer and elk or surveillance studies of private or protected herds, where depopulation is contraindicated. This study sought to evaluate the sensitivity of the real-time quaking-induced conversion (RT-QuIC) assay by using recto-anal mucosa-associated lymphoid tissue (RAMALT) biopsy specimens and nasal brush samples collected antemortem from farmed white-tailed deer ( n = 409). Antemortem findings were then compared to results from ante- and postmortem samples (RAMALT, brainstem, and medial retropharyngeal lymph nodes) evaluated by using the current gold standard in vitro assay, immunohistochemistry (IHC) analysis. We hypothesized that the sensitivity of RT-QuIC would be comparable to IHC analysis in antemortem tissues and would correlate with both the genotype and the stage of clinical disease. Our results showed that RAMALT testing by RT-QuIC assay had the highest sensitivity (69.8%) compared to that of postmortem testing, with a specificity of >93.9%. These data suggest that RT-QuIC, like IHC analysis, is an effective assay for detection of PrP CWD in rectal biopsy specimens and other antemortem samples and, with further research to identify more sensitive tissues, bodily fluids, or experimental conditions, has potential for large-scale and rapid automated testing for CWD diagnosis.

Journal of Clinical Microbiology↗

USGS2020

Validation of laboratory tests for infectious diseases in wild mammals: Review and recommendations

Evaluation of the diagnostic sensitivity (DSe) and specificity (DSp) of tests for infectious diseases in wild animals is challenging, and some of the limitations may affect compliance with the OIE-recommended test validation pathway. We conducted a methodologic review of test validation studies for OIE-listed diseases in wild mammals published between 2008 and 2017 and focused on study design, statistical analysis, and reporting of results. Most published papers addressed Mycobacterium bovis infection in one or more wildlife species. Our review revealed limitations or missing information about sampled animals, identification criteria for positive and negative samples (case definition), representativeness of source and target populations, and species in the study, as well as information identifying animals sampled for calculations of DSe and DSp as naturally infected captive, free-ranging, or experimentally challenged animals. The deficiencies may have reflected omissions in reporting rather than design flaws, although lack of random sampling might have induced bias in estimates of DSe and DSp. We used case studies of validation of tests for hemorrhagic diseases in deer and white-nose syndrome in hibernating bats to demonstrate approaches for validation when new pathogen serotypes or genotypes are detected and diagnostic algorithms are changed, and how purposes of tests evolve together with the evolution of the pathogen after identification. We describe potential benefits of experimental challenge studies for obtaining DSe and DSp estimates, methods to maintain sample integrity, and Bayesian latent class models for statistical analysis. We make recommendations for improvements in future studies of detection test accuracy in wild mammals.

Journal of Veterinary Diagnostic Investigation↗

USGS1980

The effect of dissolution of volcanic glass on the water chemistry in a tuffaceous aquifer, Rainier Mesa, Nevada

Geochemistry of ground water associated with the Tertiary tuffs within Rainier Mesa, southern Nevada, was investigated to determine the relative importance of glass dissolution in controlling water chemistry. Water samples were obtained both from interstitial pores in core sections and from free-flowing fractures. Cation com- positions showed that calcium and magnesium decreased as a function of depth in the mesa, as sodium increased. The maximum effect occurs within alteration zones containing clinoptilolite and montmorillonite, suggesting these minerals effectively remove bivalent cations from the system. Comparisons are made between compositions of ground waters found within Rainier Mesa that apparently have not reacted with secondary minerals and compositions of waters produced by experimental dissolution of vitric and crystalline tufts which comprise the principal aquifers in the area. The two tuff phases have the same bulk chemistry but produce aqueous solutions of different chemistry. Rapid parabolic dissolution of sodium and silica from, and the retention of, potassium within the vitric phase verify previous predictions concerning water compositions associated with vitric volcanic rocks. Parabolic dissolution of the crystalline phase results in solutions high in calcium and magnesium and low in silica. Extrapolation of the parabolic dissolution mechanism for the vitric tuff to long times successfully reproduces, at com- parable pH, cation ratios existing in Rainier Mesa ground water. Comparison of mass- transfer rates of the vitric and crystalline tuffs indicates that the apparent higher glass-surface to aqueous-volume ratio associated with the vitric rocks may account for dominance of the glass reaction.

Water Supply Paper↗

USGS2007

Activity, aggression, and habitat use of ruffe ( Gymnocephalus cernuus ) and round goby ( Apollonia melanostoma ) under laboratory conditions

Potential negative ecological interactions between ruffe Gymnocephalus cernuus and round goby Apollonia melanostoma (formerly Neogobius melanostomus ) might affect the colonization dynamics of these invasive species where they are sympatric in the Great Lakes. In order to determine the potential for ecological interactions between these species, we examined the activity, aggression, and habitat use of round gobies and ruffe in single species and mixed species laboratory experiments. Trials included conditions in which food was concentrated (in light or darkness) or scattered. Results showed that ruffe were more active than gobies, particularly when food was scattered. Activity of both species was significantly lower during darkness. Round gobies were significantly more aggressive than ruffe, and total aggression was lower in mixed species trials. Habitat use by ruffe and round gobies overlapped considerably, but we observed significant differences between species in their use of specific habitats that depended on experimental conditions. Overall, ruffe used open habitats more often than did round gobies, primarily when food was scattered. Round gobies used rocks significantly more frequently than did ruffe, but their use of rock habitat decreased during dark conditions. Ruffe were found more often in plant habitats and less often near the wall of the pool in trials during daylight with concentrated food. Activity and habitat use of ruffe and round goby did not significantly differ between single and mixed species trials. Overall, we found little evidence for negative ecological interactions between ruffe and round goby in these laboratory experiments.

Journal of Great Lakes Research↗

USGS2018

Effects of experimental removal of Barred Owls on population demography of Northern Spotted Owls in Washington and Oregon—2017 progress report

Populations of Northern Spotted Owls ( Strix occidentalis caurina ; hereinafter referred to as Spotted Owl) are declining throughout this subspecies’ geographic range. Evidence indicates that competition with invading populations of Barred Owls ( S. varia ) has contributed significantly to those declines. A pilot study in California showed that localized removal of Barred Owls coupled with conservation of suitable forest conditions can slow or even reverse population declines of Spotted Owls. It remains unknown, however, whether similar results can be obtained in areas with different forest conditions, greater densities of Barred Owls, and fewer remaining Spotted Owls. During 2015–17, we initiated a before-after-control-impact (BACI) experiment at three study areas in Oregon and Washington to determine if removal of Barred Owls can improve population trends of Spotted Owls. Each study area had at least 20 years of pre-treatment demographic data on Spotted Owls, and represented different forest conditions occupied by the two owl species in the Pacific Northwest. This report describes research accomplishments and preliminary results from the first 2.5 years (March 2015–August 2017) of the planned 5-year experiment.

Oregon, Washington↗