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At least 847 records · Page 47Linked to original sources
USGS2015

Testing the thermal-niche oxygen-squeeze hypothesis for estuarine striped bass

In many stratified coastal ecosystems, conceptual and bioenergetics models predict seasonal reduction in quality and quantity of fish habitat due to high temperatures and hypoxia. We tested these predictions using acoustic telemetry of 2 to 4 kg striped bass (Morone saxatilis Walbaum) and high-resolution spatial water quality sampling in the Patuxent River, a sub-estuary of the Chesapeake Bay, during 2008 and 2009. Striped bass avoided hypoxic (dissolved oxygen ≤2 mg·l−1) subpycnocline waters, but frequently occupied habitats with high temperatures (>25 °C) in the summer months, as cooler habitats were typically not available. Using traditional concepts of the seasonal thermal-niche oxygen-squeeze, most of the Patuxent estuary would beconsidered unsuitable habitat for adult striped bass during summer. Application of a bioenergetics model revealed that habitats selected by striped bass during summer would support positive growth rates assuming fish could feed at one-half ofmaximum consumption. Occupancy of the estuary during summer by striped bass in this study was likely facilitated by sufficient prey and innate tolerance of high temperatures by sub-adult fish of the size range that we tagged. Our results help extend the thermalniche oxygen-squeeze hypothesis to native populations of striped bass in semi-enclosed coastal systems. Tolerance of for supraoptimal temperatures in our study supports recent suggestions by others that the thermal-niche concept for striped bass should be revised to include warmer temperatures.

Environmental Biology of Fishes↗
USGS2017

Energetic requirements of green sturgeon (Acipenser medirostris) feeding on burrowing shrimp (Neotrypaea californiensis) in estuaries: importance of temperature, reproductive investment, and residence time

Habitat use can be complex, as tradeoffs among physiology, resource abundance, and predator avoidance affect the suitability of different environments for different species. Green sturgeon ( Acipenser medirostris ), an imperiled species along the west coast of North America, undertake extensive coastal migrations and occupy estuaries during the summer and early fall. Warm water and abundant prey in estuaries may afford a growth opportunity. We applied a bioenergetics model to investigate how variation in estuarine temperature, spawning frequency, and duration of estuarine residence affect consumption and growth potential for individual green sturgeon. We assumed that green sturgeon achieve observed annual growth by feeding solely in conditions represented by Willapa Bay, Washington, an estuary annually frequented by green sturgeon and containing extensive tidal flats that harbor a major prey source (burrowing shrimp, Neotrypaea californiensis ). Modeled consumption rates increased little with reproductive investment (<0.4%), but responded strongly (10–50%) to water temperature and duration of residence, as higher temperatures and longer residence required greater consumption to achieve equivalent growth. Accordingly, although green sturgeon occupy Willapa Bay from May through September, acoustically-tagged individuals are observed over much shorter durations (34 d + 41 d SD, N = 89). Simulations of <34 d estuarine residence required unrealistically high consumption rates to achieve observed growth, whereas longer durations required sustained feeding, and therefore higher total intake, to compensate for prolonged exposure to warm temperatures. Model results provide a range of per capita consumption rates by green sturgeon feeding in estuaries to inform management decisions regarding resource and habitat protection for this protected species.

Environmental Biology of Fishes↗
USGS2018

Partial migration of the nurse shark, Ginglymostoma cirratum (Bonnaterre), from the Dry Tortugas Islands

Nurse sharks have not previously been known to migrate. Nurse sharks of the Dry Tortugas (DRTO) mating population have a highly predictable periodic residency cycle, returning to the Dry Tortugas Courtship and Mating Ground (DTCMG) annually (males) or bi- to triennially (females) during the June/July mating season. For 23 years we have followed the movements of 76 recaptured adults of a total of 115 tagged adults. Telemetry detections of 40 females tagged with acoustic transmitters show that most tagged and presumably post-partum females are continuously present in the DRTO in the fall, winter and early spring following the June mating season but these females depart in late March to early May. Detections reveal these females avoid the DTCMG completely during the next mating season, returning from late summer to fall. Telemetry records of nine of 17 adult males that co-habited with these females in the DTCMG depart DRTO waters every July. Both sexes may overwinter in the DRTO. Between 2011 and 2016 three males and five females with transmitters were detected to move up the west coast of Florida outside of the mating season as far north as the waters off Tampa Bay (335 km). Six others were only detected in the lower Florida Keys (292 km). Nine sharks returned to DRTO; one returned six times. Some overwintered and some resumed courtship in June, demonstrating both resident and migratory contingents within their population, partial migration and an ability to navigate with high spatial and temporal precision.

Florida↗
USGS2020

Outmigration survival of wild Chinook salmon smolts through the Sacramento River during historic drought and high water conditions

Populations of wild spring-run Chinook salmon in California’s Central Valley, once numbering in the millions, have dramatically declined to record low numbers. Dam construction, habitat degradation, and altered flow regimes have all contributed to depress populations, which currently persist in only a few tributaries to the Sacramento River. Mill Creek (Tehama County) continues to support these threatened fish, and contains some of the most pristine spawning and rearing habitat available in the Central Valley. Despite this pristine habitat, the number of Chinook salmon returning to spawn has declined to record low numbers, likely due to poor outmigration survival rates. From 2013-2017, 334 smolts were captured and acoustic tagged while out-migrating from Mill Creek, allowing for movement and survival rates to be tracked over 250 kilometers through the Sacramento River. During this study California experienced both a historic drought and record rainfall, resulting in dramatic fluctuations in year-to-year river flow and water temperature. Cumulative survival of tagged smolts from Mill Creek through the Sacramento River was 9.5% (±1.6) during the study, with relatively low survival during historic drought conditions in 2015 (4.9% ± 1.6) followed by increased survival during high flows in 2017 (42.3% ± 9.1). Survival in Mill Creek and the Sacramento River was modeled over a range of flow values, which indicated that higher flows in each region result in increased survival rates. Survival estimates gathered in this study can help focus management and restoration actions over a relatively long migration corridor to specific regions of low survival, and provide guidance for management actions in the Sacramento River aimed at restoring populations of threatened Central Valley spring-run Chinook salmon.

California↗
USGS2022

Quantifying the effects of tides, river flow, and barriers on movements of Chinook Salmon smolts at junctions in the Sacramento–San Joaquin River Delta using multistate models

Successful migration of Chinook Salmon ( Oncorhynchus tshawytscha ) smolts seaward in the Sacramento – San Joaquin River Delta (hereafter, Delta) requires navigating a network of numerous branching channels. Within the Delta, several key junctions route smolts either towards more direct paths to the ocean or towards the interior Delta, an area associated with decreased survival. Movements within these junctions that determine route choice can be influenced by numerous behavioral and environmental factors, including the complex interplay between tidal and riverine hydraulics. Here, we apply continuous time multistate Markov models to examine the influence of tidal and riverine hydraulics, behavioral factors, and management actions on smolt movements. These models incorporate more information from acoustic telemetry data compared with previous approaches to modeling smolt movements in the Delta. By decomposing modeled flows into tidal and net flow signals we elucidate how each component influences movements into and out of distributary channels. Increasing net flows generally increased movement rates, while flood tides decreased seaward movement rates. Similarly, ebb tides increased downstream movements as fish go with the flow. We found less support for diel movement behaviors compared to flow metrics. Additionally, we quantify the effects of a large management action, the placement of a physical barrier, which was effective at decreasing entrainment into the interior Delta. Together, these results help inform management of Chinook Salmon and increase our understanding of the major factors driving smolt movements within these key junctions.

California↗
USGS2016

Numerical modeling of simultaneous tracer release and piscicide treatment for invasive species control in the Chicago Sanitary and Ship Canal, Chicago, Illinois

In December 2009, during a piscicide treatment targeting the invasive Asian carp in the Chicago Sanitary and Ship Canal, Rhodamine WT dye was released to track and document the transport and dispersion of the piscicide. In this study, two modeling approaches are presented to reproduce the advection and dispersion of the dye tracer (and piscicide), a one-dimensional analytical solution and a three-dimensional numerical model. The two approaches were compared with field measurements of concentration and their applicability is discussed. Acoustic Doppler current profiler measurements were used to estimate the longitudinal dispersion coefficients at ten cross sections, which were taken as reference for calibrating the longitudinal dispersion coefficient in the one-dimensional analytical solution. While the analytical solution is fast, relatively simple, and can fairly accurately predict the core of the observed concentration time series at points downstream, it does not capture the tail of the breakthrough curves. These tails are well reproduced by the three-dimensional model, because it accounts for the effects of dead zones and a power plant which withdraws nearly 80 % of the water from the canal for cooling purposes before returning it back to the canal.

Illinois↗
USGS2026

Invasion potential of nonnative fishes through a large western dam into an iconic and vulnerable ecosystem

Native fishes face imperilment due to habitat loss and fragmentation, megadrought, invasive species, and synergies amongst threats. These threats coalesce at Glen Canyon Dam (GCD), which impounds the Colorado River to create Lake Powell, a reservoir inhabited by a suite of nonnative fishes. Water level in Lake Powell has declined precipitously due to water overallocation and megadrought, increasing the risk of nonnative fish entrainment through the dam, as the penstocks draw water from the epilimnion. Our goal was to characterize the distribution and abundance of nonnative fishes in the vicinity of GCD and identify environmental conditions that may increase entrainment. We used active and passive sampling, hydroacoustics, and acoustic telemetry to assess the distribution and abundance of fishes. When the reservoir was stratified fish remained in the epilimnion, were present near the GCD penstocks, and thus at high risk of entrainment. When the reservoir was mixed, fish generally occupied shallower, warmer areas further from GCD, but this varied among species. The distribution of nonnative fish and accompanying risk of entrainment varied by season and epilimnion depth. Retaining more water in Lake Powell to draw water from below the thermocline would reduce the risk of nonnative fish entrainment into Grand Canyon.

Arizona, Utah↗
USGS2021

Extent, configuration and diversity of burned and forested areas predict bat richness in a fire-maintained forest

Context Fire transforms, fragments and sometimes maintains forests, creating mosaics of burned and unburned patches. Highly mobile animals respond to resources in the landscape at a variety of spatial scales, yet we know little about their landscape-scale relationships with fire. Objectives We aimed to identify drivers of bat richness in a landscape mosaic of forested and burned areas while identifying spatial scales at which bat richness was most strongly related to extent, configuration, and diversity measures of landscape-level habitat. Methods We used multi-species hierarchical occupancy modelling to relate bat richness to landscape variables at 10 spatial scales, based on acoustic data collected in the Sierra Nevada, United States. We also assessed redundancy among landscape variable type (extent, configuration, and diversity) and between focal patch types (forested and burned). Results Bat richness was positively associated with heterogenous landscapes, shown by positive associations with pyrodiversity, extent and mean area of burned patches, burned and forested edge density and patch density and relationships were generally consistent across scales. Extent of forest cover and burned areas were highly correlated, but configuration and diversity of these patch types diverged. Conclusions Bat communities of our study area appear to be largely resilient to wildfire and adapted to more heterogenous forests and shorter-interval fire regimes that likely predominated before the fire suppression era.

California↗
USGS2018

Accurate ocean bottom seismometer positioning method inspired by multilateration technique

The positioning of ocean bottom seismometers (OBS) is a key step in the processing flow of OBS data, especially in the case of self popup types of OBS instruments. The use of first arrivals from airgun shots, rather than relying on the acoustic transponders mounted in the OBS, is becoming a trend and generally leads to more accurate positioning due to the statistics from a large number of shots. In this paper, a linearization of the OBS positioning problem via the multilateration technique is discussed. The discussed linear solution solves jointly for the average water layer velocity and the OBS position using only shot locations and first arrival times as input data.

Mathematical Geosciences↗
USGS2017

A suite of standard post-tagging evaluation metrics can help assess tag retention for field-based fish telemetry research

Telemetry can inform many scientific and research questions if a context exists for integrating individual studies into the larger body of literature. Creating cumulative distributions of post-tagging evaluation metrics would allow individual researchers to relate their telemetry data to other studies. Widespread reporting of standard metrics is a precursor to the calculation of benchmarks for these distributions (e.g., mean, SD, 95% CI). Here we illustrate five types of standard post-tagging evaluation metrics using acoustically tagged Blue Catfish ( Ictalurus furcatus ) released into a Kansas reservoir. These metrics included: (1) percent of tagged fish detected overall, (2) percent of tagged fish detected daily using abacus plot data, (3) average number of (and percent of available) receiver sites visited, (4) date of last movement between receiver sites (and percent of tagged fish moving during that time period), and (5) number (and percent) of fish that egressed through exit gates. These metrics were calculated for one to three time periods: early (<10 d), during (weekly), and at the end of the study (5 months). Over three-quarters of our tagged fish were detected early (85%) and at the end (85%) of the study. Using abacus plot data, all tagged fish (100%) were detected at least one day and 96% were detected for > 5 days early in the study. On average, tagged Blue Catfish visited 9 (50%) and 13 (72%) of 18 within-reservoir receivers early and at the end of the study, respectively. At the end of the study, 73% of all tagged fish were detected moving between receivers. Creating statistical benchmarks for individual metrics can provide useful reference points. In addition, combining multiple metrics can inform ecology and research design. Consequently, individual researchers and the field of telemetry research can benefit from widespread, detailed, and standard reporting of post-tagging detection metrics.

Reviews in Fish Biology and Fisheries↗
USGS2010

Measuring sediment accretion in early tidal marsh restoration

Sediment accretion is a critical indicator of initial progress in tidal marsh restoration. However, it is often difficult to measure early deposition rates, because the bottom surface is usually obscured under turbid, tidally-influenced waters. To accurately measure early sediment deposition in marshes, we developed an echosounder system consisting of a specialized acoustic profiler, differential global positioning system unit, and laptop computer mounted on a shallow-draft boat. We conducted a bathymetry at the Tubbs Setback tidal restoration site on San Pablo Bay, California, along north–south transects at 25-m intervals. Horizontal position was recorded within 1 m each second and water depth to 1 cm every 0.05 s. Bottom elevations were adjusted for tidal height with surveyed tide gages. We created detailed bathymetric maps (grid cell size: 12.5 m x 12.5 m) by interpolation with inverse distance weighting. During the third year after restoration, sediment accretion averaged 57.1 ± 1.1 cm and the estimated sediment gain was 132,900 m3. The mean difference between the elevations from the bathymetry system and the 9 sediment pins was 2.0 ± 1.0 cm. The mean difference of the intersection points of east–west and north–south survey transects was 2.1 ± 0.2 cm, which provided a measure of repeatability with changing water levels. Our echosounder system provided accurate and repeatable measurements of sediment accretion of a recently restored tidal wetland, and this system proved to be a viable tool for determining sediment deposition in marshes and assessing early restoration progress.

California↗
USGS2008

Suspended sediment transport in the freshwater reach of the Hudson river estuary in eastern New York

Deposition of Hudson River sediment into New York Harbor interferes with navigation lanes and requires continuous dredging. Sediment dynamics at the Hudson estuary turbidity maximum (ETM) have received considerable study, but delivery of sediment to the ETM through the freshwater reach of the estuary has received relatively little attention and few direct measurements. An acoustic Doppler current profiler was positioned at the approximate limit of continuous freshwater to develop a 4-year time series of water velocity, discharge, suspended sediment concentration, and suspended sediment discharge. This data set was compared with suspended sediment discharge data collected during the same period at two sites just above the Hudson head-of-tide (the Federal Dam at Troy) that together represent the single largest source of sediment entering the estuary. The mean annual suspended sediment-discharge from the freshwater reach of the estuary was 737,000 metric tons. Unexpectedly, the total suspended sediment discharge at the study site in November and December slightly exceeded that observed during March and April, the months during which rain and snowmelt typically result in the largest sediment discharge to the estuary. Suspended sediment discharge at the study site exceeded that from the Federal Dam, even though the intervening reach appears to store significant amounts of sediment, suggesting that 30-40% of sediment discharge observed at the study site is derived from tributaries to the estuary between the Federal Dam and study site. A simple model of sediment entering and passing through the freshwater reach on a timescale of weeks appears reasonable during normal hydrologic conditions in adjoining watersheds; however, this simple model may dramatically overestimate sediment delivery during extreme tributary high flows, especially those at the end of, or after, the "flushing season" (October through April). Previous estimates of annual or seasonal sediment delivery from tributaries and the Federal Dam to the ETM and harbor may be high for those years with extreme tributary high-flow events. ?? 2008 Coastal and Estuarine Research Federation.

Estuaries and Coasts↗
USGS2017

Quantifying site-specific physical heterogeneity within an estuarine seascape

Quantifying physical heterogeneity is essential for meaningful ecological research and effective resource management. Spatial patterns of multiple, co-occurring physical features are rarely quantified across a seascape because of methodological challenges. Here, we identified approaches that measured total site-specific heterogeneity, an often overlooked aspect of estuarine ecosystems. Specifically, we examined 23 metrics that quantified four types of common physical features: (1) river and creek confluences, (2) bathymetric variation including underwater drop-offs, (3) land features such as islands/sandbars, and (4) major underwater channel networks. Our research at 40 sites throughout Plum Island Estuary (PIE) provided solutions to two problems. The first problem was that individual metrics that measured heterogeneity of a single physical feature showed different regional patterns. We solved this first problem by combining multiple metrics for a single feature using a within-physical feature cluster analysis. With this approach, we identified sites with four different types of confluences and three different types of underwater drop-offs. The second problem was that when multiple physical features co-occurred, new patterns of total site-specific heterogeneity were created across the seascape. This pattern of total heterogeneity has potential ecological relevance to structure-oriented predators. To address this second problem, we identified sites with similar types of total physical heterogeneity using an across-physical feature cluster analysis. Then, we calculated an additive heterogeneity index, which integrated all physical features at a site. Finally, we tested if site-specific additive heterogeneity index values differed for across-physical feature clusters. In PIE, the sites with the highest additive heterogeneity index values were clustered together and corresponded to sites where a fish predator, adult striped bass ( Morone saxatilis ), aggregated in a related acoustic tracking study. In summary, we have shown general approaches to quantifying site-specific heterogeneity.

Massachusetts↗
USGS2020

Trapping of suspended sediment by submerged aquatic vegetation in a tidal freshwater region: Field observations and long-term trends

Widespread invasion by non-native, submerged aquatic vegetation (SAV) may modify the sediment budget of an estuary, reducing the availability of inorganic sediment required by marshes to maintain their position in the tidal frame. The instantaneous trapping rate of suspended sediment in SAV patches in an estuary has not previously been quantified via field observations. In this study, flows of water and suspended sediment through patches of invasive SAV were measured at three tidally forced, freshwater sites, all located within the Sacramento-San Joaquin Delta in California. An acoustic Doppler current profiler deployed from a roving vessel provided velocity and backscatter data used to quantify fluxes of both water and suspended sediment. Sediment trapping efficiency, defined as instantaneous net trapped flux divided by incident flux, was positive in 24 of 29 cases, averaging + 5%. Coupled with 3 years of measured sediment flux data at one site, this suggests that trapping averages 3.7 kg m −2 year −1 . This estimate compares favorably with the mean mass accumulation rate of 3.8 kg m −2 year −1 estimated from dated sediment cores collected at the study sites. Long-term measurements made upstream reveal a strong negative trend (− 1.8% year −1 ) in suspended sediment concentration, and intra-annual changes in both suspended sediment concentration and percent fines. The large footprint and high spatial density of invasive SAV coupled with declining sediment supply are diminishing downstream suspended sediment concentrations, potentially reducing the resiliency of marshes in the Delta and lower estuary to future sea-level rise.

California↗
USGS2025

Survival, travel time, and use of migration routes by juvenile steelhead in a modified river estuary

Greater understanding of the survival, travel time, and spatial distribution of juvenile salmonids among migration routes between their natal streams and the ocean is critical to the recovery of these threatened species. In the Sacramento–San Joaquin River Delta (Delta), a highly modified estuary in central California, USA, there is a critical need to evaluate how water management (e.g., water pumping) and environmental factors (e.g., water flow) impact these populations. While management actions can affect some environmental variables in the Delta, only recently have studies begun to uncover associations between these variables and key demographic parameters. In this study, we examine the effects of freshwater flows, water exports, tidal environment, and a temporary barrier on juvenile steelhead ( Oncorhynchus mykiss ) survival, travel times, and migration routing using a multiyear acoustic telemetry dataset and recent advancements in Bayesian multistate mark-recapture modeling. We found that no single covariate explained variation in juvenile steelhead population dynamics across the entire Delta, but that separate regions within the Delta showed association with specific environmental factors.

California↗
USGS2009

High-frequency Rayleigh-wave method

High-frequency (≥2 Hz) Rayleigh-wave data acquired with a multichannel recording system have been utilized to determine shear (S)-wave velocities in near-surface geophysics since the early 1980s. This overview article discusses the main research results of high-frequency surface-wave techniques achieved by research groups at the Kansas Geological Survey and China University of Geosciences in the last 15 years. The multichannel analysis of surface wave (MASW) method is a non-invasive acoustic approach to estimate near-surface S-wave velocity. The differences between MASW results and direct borehole measurements are approximately 15% or less and random. Studies show that simultaneous inversion with higher modes and the fundamental mode can increase model resolution and an investigation depth. The other important seismic property, quality factor ( Q ), can also be estimated with the MASW method by inverting attenuation coefficients of Rayleigh waves. An inverted model (S-wave velocity or Q ) obtained using a damped least-squares method can be assessed by an optimal damping vector in a vicinity of the inverted model determined by an objective function, which is the trace of a weighted sum of model-resolution and model-covariance matrices. Current developments include modeling high-frequency Rayleigh-waves in near-surface media, which builds a foundation for shallow seismic or Rayleigh-wave inversion in the time-offset domain; imaging dispersive energy with high resolution in the frequency-velocity domain and possibly with data in an arbitrary acquisition geometry, which opens a door for 3D surface-wave techniques; and successfully separating surface-wave modes, which provides a valuable tool to perform S-wave velocity profiling with high-horizontal resolution.

Earth Science↗
USGS1972

Structural profile of the northwestern Caribbean

A seismic reflection and gravity profile across the continental margin of the Yucatan Peninsula, Yucatan Basin, Cayman Ridge, and Cayman Trough suggests that sediments in the Yucatan Basin consist of a thick succession of beds dominated by turbidites that overlie a thick but irregular sequence of beds, probably dominated by pelagic deposits. The so-called “Carib beds”, present elsewhere in the Caribbean, are not evident in the part of the basin crossed by this profile. The sedimentary section rests on a acoustic basement that probably represents the top of oceanic layer 2. A gravity model indicates that the crust beneath the Yucatan Basin is thin and therefore probably is oceanic in character. The crust thickens southward under the Cayman Ridge but thins again beneath the Cayman Trough. This local thickening is consistent with the suggestion that the Cayman Ridge is a rifted part of the Nicaraguan Rise.

Earth and Planetary Science Letters↗
USGS1981

Gas hydrates (clathrates) causing pore-water freshening and oxygen isotope fractionation in deep-water sedimentary sections of terrigenous continental margins

The occurrence of gas hydrates in deep-water sections of the continental margins predicted from anomalous acoustic reflectors on seismic profiles has been confirmed by recent deep-sea drilling results. On the Pacific continental slope off Guatemala gas hydrates were brought up for the first time from two holes (497, 498A) drilled during Leg 67 of the DSDP in water depths of 2360 and 5500 m, respectively. The hydrates occur in organic matter-rich Pleistocene to Miocene terrigenous sediments. In the hydrate-bearing zone a marked decrease in interstitial water chlorinities was observed starting at about 10–20 m subbottom depth. Pore waters at the bottom of the holes (near 400 m subbottom) have as little as half the chlorinity of seawater (i.e. 9‰). Similar, but less pronounced, trends were observed during previous legs of the DSDP in other hydrate-prone segments of the continental margins where recharge of fresh water from the continent can be excluded (e.g. Leg 11). The crystallization of hydrates, like ice, excludes salt ions from the crystal structure. During burial the dissolved salts are separated from the solids. Subsidence results in a downward motion of the solids (including hydrates) relative to the pore fluids. Thawing of hydrates during recovery releases fresh water which is remixed with the pore fluid not involved in hydrate formation. The volume of the latter decreases downhole thus causing downward decreasing salinity (chlorinity). Hydrate formation is responsible for oxygen isotope fractionation with 18 O-enrichment in the hydrate explaining increasingly more positive δ 18 O values in the pore fluids recovered (after hydrate dissociation) with depth.

Earth and Planetary Science Letters↗