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Recommendations for a barrier island breach management plan for Fire Island National Seashore, including the Otis Pike High Dune Wilderness Area, Long Island, New York

The U.S Army Corps of Engineers, New York District is developing engineering plans, including economic costs and benefits, for storm damage reduction along an 83 mile stretch of the coastal barrier islands and beaches on the south shore of Long Island, NY from Fire Island Inlet east to the Montauk Point headland. The plan, expected to include various alternatives for storm protection and erosion mitigation, is referred to as the Fire Island to Montauk Point Reformulation Plan (FIMP). These plans are expected to follow the Corps of Engineers’ Environmental Operating Principles striving for long term environmental sustainability and balance between environmental protection and protection of human health and property. Fire Island National Seashore (FIIS), a 19,579 acre unit of the National Park System includes a 32 mile long coastal barrier island located within the FIMP project area. A seven-mile section of the park, Otis Pike Fire Island High Dune Wilderness Area, is also a designated Federal Wilderness Area. The FIIS includes not only the barrier island and sand dunes, but also several islands, sand flats and wetlands landward of the barrier, submerged parts of Great South Bay shoreface, extending approximately 4,000 feet into the bay with the inner shelf region extending approximately 1,000 feet seaward of the Fire Island shoreline. The Fire Island barrier islands, a sand-starved system dominated by highly dynamic processes, are struggling to maintain their integrity in the face of sea-level rise and storms. Adding to the dilemma is that development on the barriers and the mainland has increased greatly during the past 50 years. As such, managers and decision makers in federal agencies, state agencies and local governments are challenged to balance tradeoffs between protection of lives and property, public access and long term conservation of natural habitats and processes and the plants and animals that depend on these habitats. National Park Service (NPS) policy stipulates that natural coastal processes be maintained to the greatest extent possible and not be impeded so as to conserve landforms, habitats and natural ecosystem resources that reply on the landforms and processes for long-term sustainability of the national park. Storms and associated processes such as waves, tides, currents and relative sea-level change are critical elements for the formation and evolution of these barrier islands, sand dunes, back-barrier sand flats and lagoons and vegetated wetlands. Processes such as wave run-up, overwash and barrier beaching, which occur during elevated storm surge are all necessary processes in enabling the efficient transfer of sediments, nutrients and marine water from the Atlantic Ocean across barriers and into Great South Bay. A large body of scientific data and information published over the past 50 years shows that such transfers of sediment and water from the ocean to the bays are essential for the long-term maintenance of the barrier island and back-bay systems and their biologically diverse habitats an d ecosystems. Current relative sea-level rise (~12 in/century) is chronic and pervasive in driving Long Island coastal change and with the likelihood of accelerating sea level rise in the near future, coastal hazards such as erosion, inundation, and storm surge flooding will increase, with corresponding increased risk to life and property on both Fire Island and on the mainland. In addition, the cumulative effects over the past century and more, both direct and indirect, of human impacts on the Long Island coast have altered the barrier beach and dunes and sediment transport processes. These impacts have likely increased the potential for breaching and increased risk to life and property on the coast and the mainland. Examples of direct impacts are: the stone jetties at Moriches, Shinnecock, and Fire Island tidal inlets and groin field structures at Westhampton that alter littoral processes, armoring and erosion-control stabilization of the headlandds such as the Montauk Point headlands, and deepening of navigation channels by dredging through the tidal inlets and in the bays. Indirect impacts that have a bearing on decisions to deal with breaching are: high-risk development of the barrier islands and low-lying areas of the mainland vulnerable to flooding, and the dredging of nearshore sand shoals for beach nourishment. The NPS strives to employ a coastal management framework for decision making that is based on assessment of the physical and ecological properties of the shoreline as well as human welfare and property. In order to protect developed areas of Fire Island and the mainland from loss of life, flooding, and other economic and physical damage, the NPS will likely need to consider allowing artificial closure of some breaches within the FIIS under certain circumstances. The decision by the NPS to allow breaches to evolve naturally and possibly close or to allow artificially closing breaches is based on four criteria: 1. Volumes of sediment transported landward and exchange of water and nutrients; 2. Elevated water levels and flooding risk to mainland life and property; 3. Engineering processes of artificial closure; and 4. Economic costs and benefits of artificial closure. This report for breach management presents protocols which specify when breach closures within the FIIS might be desirable and necessary, as well as provides recommendations for structural breach closure engineering operations which are indented to minimize negative impacts to the natural wilderness values and cultural resources within the FIIS, particularly the Otis Pike Wilderness Area. The goal of the plan is to strike a balance between protecting natural resources and allowing natural processes to operate and avoiding loss of life and excessive property damage.

New York↗

Fish assemblages in the Penobscot River: A decade after dam removal

The Penobscot River Restoration Project in Maine was a large river rehabilitation project that culminated in the removal of the two lowermost dams and improvements to fish passage on several remaining dams. Fish assemblages were surveyed for 3 years prior to rehabilitation, 3 years after rehabilitation, and 8 years after rehabilitation. Approximately 475 km of shoreline were sampled via boat electrofishing, yielding 133,394 individual fish of 41 species. The greatest shifts in assemblage structure occurred immediately after dam removal in formerly impounded sections, with an increased prevalence of riverine and migratory species. Long-term sampling documented changes within tributaries and tidally influenced river segments, where large schools of adult and young-of-the-year alosines increased in abundance. Upstream of the lowermost dam, the river remains dominated by lacustrine species, while adult anadromous fishes continue to be most abundant immediately downstream of the lowermost dam. Our results provide increased evidence that dam removals result in altered fish assemblages, which are now dominated by riverine and anadromous species in previously impounded habitats. Alosines in the Penobscot River have exhibited the greatest long-term response to river restoration efforts.

Maine↗

Archive of digital boomer subbottom data collected during USGS cruise 05FGS01 offshore east-central Florida, July 17-29, 2005

In July of 2005, the U.S. Geological Survey (USGS), in cooperation with the Florida Geological Survey (FGS), conducted a geophysical survey of the Atlantic Ocean offshore of Florida's east coast from Flagler Beach to Daytona Beach. This report serves as an archive of unprocessed digital boomer subbottom data, trackline maps, navigation files, Geographic Information System (GIS) files, Field Activity Collection System (FACS) logs and formal Federal Geographic Data Committee (FGDC) metadata. Filtered and gained (showing a relative increase in signal amplitude) digital images of the seismic profiles are also provided. Refer to the Acronyms page for expansions of acronyms and abbreviations used in this report. The USGS Saint Petersburg Coastal and Marine Science Center (SPCMSC) assigns a unique identifier to each cruise or field activity. For example, 05FGS01 tells us the data were collected in 2005 for cooperative work with the FGS and the data were collected during the first field activity for that project in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity ID. The boomer subbottom processing system consists of an acoustic energy source that is made up of capacitors charged to a high voltage and discharged through a transducer in the water. The transducer is towed on a sled floating on the water surface and when discharged emits a short acoustic pulse, or shot, which propagates through the water column and shallow stratrigraphy below. The acoustic energy is reflected at density boundaries (such as the seafloor or sediment layers beneath the seafloor), detected by the receiver (a hydrophone streamer), and recorded by a PC-based seismic acquisition system. This process is repeated at timed intervals (for example, 0.5 s) and recorded for specific intervals of time (for example, 100 ms). In this way, a two-dimensional (2-D) vertical image of the shallow geologic structure beneath the ship track is produced. Figure 1 displays the acquisition geometry. Refer to table 1 for a summary of acquisition parameters and table 2 for trackline statistics. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG Y format (Barry and others, 1975), except an ASCII format is used for the first 3,200 bytes of the card image header instead of the standard EBCDIC format. For a detailed description about the recorded trace headers, refer to the SEG Y Format page. The SEG Y files may be downloaded and processed with commercial or public domain software such as Seismic Unix (Cohen and Stockwell, 2005). See the How To Download SEG Y Data page for download instructions. The printable profiles provided here are GIF images that were processed and gained using SU software; refer to the Software page for links to example SU processing scripts. The processed SEG Y data were also exported to Chesapeake Technology, Inc. (CTI) SonarWeb software to produce a geospatially interactive version of the profile that allows the user to obtain a geographic location and depth from the profile for a given cursor position; this information is displayed in the status bar of the browser. Please note that clicking on the profile image switches it to "Expanded View" (a compressed image of the entire line) and cursor tracking is not available in this mode.

Florida↗

Integrating high-resolution coastal acidification monitoring data across seven United States estuaries

Beginning in 2015, the United States Environmental Protection Agency’s (EPA’s) National Estuary Program (NEP) started a collaboration with partners in seven estuaries along the East Coast (Barnegat Bay; Casco Bay), West Coast (Santa Monica Bay; San Francisco Bay; Tillamook Bay), and the Gulf of Mexico (GOM) Coast (Tampa Bay; Mission-Aransas Estuary) of the United States to expand the use of autonomous monitoring of partial pressure of carbon dioxide ( p CO 2 ) and pH. Analysis of high-frequency (hourly to sub-hourly) coastal acidification data including p CO 2 , pH, temperature, salinity, and dissolved oxygen (DO) indicate that the sensors effectively captured key parameter measurements under challenging environmental conditions, allowing for an initial characterization of daily to seasonal trends in carbonate chemistry across a range of estuarine settings. Multi-year monitoring showed that across all water bodies temperature and p CO 2 covaried, suggesting that p CO 2 variability was governed, in part, by seasonal temperature changes with average p CO 2 being lower in cooler, winter months and higher in warmer, summer months. Furthermore, the timing of seasonal shifts towards increasing (or decreasing) p CO 2 varied by location and appears to be related to regional climate conditions. Specifically, p CO 2 increases began earlier in the year in warmer water, lower latitude water bodies in the GOM (Tampa Bay; Mission-Aransas Estuary) as compared with cooler water, higher latitude water bodies in the northeast (Barnegat Bay; Casco Bay), and upwelling-influenced West Coast water bodies (Tillamook Bay; Santa Monica Bay; San Francisco Bay). Results suggest that both thermal and non-thermal influences are important drivers of p CO 2 in Tampa Bay and Mission-Aransas Estuary. Conversely, non-thermal processes, most notably the biogeochemical structure of coastal upwelling, appear to be largely responsible for the observed p CO 2 values in West Coast water bodies. The co-occurrence of high salinity, high p CO 2 , low DO, and low temperature water in Santa Monica Bay and San Francisco Bay characterize the coastal upwelling paradigm that is also evident in Tillamook Bay when upwelling dominates freshwater runoff and local processes. These data demonstrate that high-quality carbonate chemistry observations can be recorded from estuarine environments using autonomous sensors originally designed for open-ocean settings.

California, Florida, Maine, New Jersey, Oregon, Te↗

The evolutionary history of steelhead ( Oncorhynchus mykiss ) along the US Pacific Coast: Developing a conservation strategy using genetic diversity

Changes in genetic variation across a species range may indicate patterns of population structure resulting from past ecological and demographic events that are otherwise difficult to infer and thus provide insight into evolutionary development. Genetic data is used, drawn from 11 microsatellite loci amplified from anadromous steelhead ( Oncorhynchus mykiss ) sampled throughout its range in the eastern Pacific Ocean, to explore population structure at the southern edge in California. Steelhead populations in this region represent less than 10% of their reported historic abundance and survive in very small populations found in fragmented habitats. Genetic data derived from three independent molecular systems (allozymes, mtDNA, and microsatellites) have shown that the southernmost populations are characterized by a relatively high genetic diversity. Two hypothetical models supporting genetic population substructure such as observed were considered: (1) range expansion with founder-flush effects and subsequent population decline; (2) a second Pleistocene radiation from the Gulf of California. Using genetic and climatic data, a second Pleistocene refugium contributing to a southern ecotone seems more feasible. These data support strong conservation measures based on genetic diversity be developed to ensure the survival of this uniquely diverse gene pool.

ICES Journal of Marine Science↗

The Galileo Solid-State Imaging experiment

The Solid State Imaging (SSI) experiment on the Galileo Orbiter spacecraft utilizes a high-resolution (1500 mm focal length) television camera with an 800 ?? 800 pixel virtual-phase, charge-coupled detector. It is designed to return images of Jupiter and its satellites that are characterized by a combination of sensitivity levels, spatial resolution, geometric fiedelity, and spectral range unmatched by imaging data obtained previously. The spectral range extends from approximately 375 to 1100 nm and only in the near ultra-violet region (??? 350 nm) is the spectral coverage reduced from previous missions. The camera is approximately 100 times more sensitive than those used in the Voyager mission, and, because of the nature of the satellite encounters, will produce images with approximately 100 times the ground resolution (i.e., ??? 50 m lp-1) on the Galilean satellites. We describe aspects of the detector including its sensitivity to energetic particle radiation and how the requirements for a large full-well capacity and long-term stability in operating voltages led to the choice of the virtual phase chip. The F/8.5 camera system can reach point sources of V(mag) ??? 11 with S/N ??? 10 and extended sources with surface brightness as low as 20 kR in its highest gain state and longest exposure mode. We describe the performance of the system as determined by ground calibration and the improvements that have been made to the telescope (same basic catadioptric design that was used in Mariner 10 and the Voyager high-resolution cameras) to reduce the scattered light reaching the detector. The images are linearly digitized 8-bits deep and, after flat-fielding, are cosmetically clean. Information 'preserving' and 'non-preserving' on-board data compression capabilities are outlined. A special "summation" mode, designed for use deep in the Jovian radiation belts, near Io, is also described. The detector is 'preflashed' before each exposure to ensure the photometric linearity. The dynamic range is spread over 3 gain states and an exposure range from 4.17 ms to 51.2 s. A low-level of radial, third-order, geometric distortion has been measured in the raw images that is entirely due to the optical design. The distortion is of the pincushion type and amounts to about 1.2 pixels in the corners of the images. It is expected to be very stable. We discuss the measurement objectives of the SSI experiment in the Jupiter system and emphasize their relationships to those of other experiments in the Galileo project. We outline objectives for Jupiter atmospheric science, noting the relationship of SSI data to that to be returned by experiments on the atmospheric entry Probe. We also outline SSI objectives for satellite surfaces, ring structure, and 'darkside' (e.g., aurorae, lightning, etc.) experiments. Proposed cruise measurement objectives that relate to encounters at Venus, Moon, Earth, Gaspra, and, possibly, Ida are also briefly outlined. The article concludes with a description of a 'fully distributed' data analysis system (HIIPS) that SSI team members intend to use at their home institutions. We also list the nature of systematic data products that will become available to the scientific community. Finally, we append a short 'historical' note outlining the responsibilities and roles of institutions and individuals that have been involved in the 14 year development of the SSI experiment so far. ?? 1992 Kluwer Academic Publishers.

Space Science Reviews↗

California State Waters Map Series — Offshore of Point Reyes, California

This publication about the Offshore of Point Reyes map area includes ten map sheets that contain explanatory text, in addition to this descriptive pamphlet and a data catalog of geographic information system (GIS) files. Sheets 1, 2, and 3 combine data from four different sonar surveys to generate comprehensive high-resolution bathymetry and acoustic-backscatter coverage of the map area. These data reveal a range of physiographic features (highlighted in the perspective views on sheet 4) such as the flat, sediment-covered seafloor in Drakes Bay, as well as abundant “scour depressions” on the Bodega Head–Tomales Point shelf (see sheet 9) and local, tectonically controlled bedrock uplifts. To validate geological and biological interpretations of the sonar data shown in sheets 1, 2, and 3, the U.S. Geological Survey towed a camera sled over specific offshore locations, collecting both video and photographic imagery; these “ground-truth” surveying data are summarized on sheet 6. Sheet 5 is a “seafloor character” map, which classifies the seafloor on the basis of depth, slope, rugosity (ruggedness), and backscatter intensity and which is further informed by the ground-truth-survey imagery. Sheet 7 is a map of “potential habitats,” which are delineated on the basis of substrate type, geomorphology, seafloor process, or other attributes that may provide a habitat for a specific species or assemblage of organisms. Sheet 8 compiles representative seismic-reflection profiles from the map area, providing information on the subsurface stratigraphy and structure of the map area. Sheet 9 shows the distribution and thickness of young sediment (deposited over the last about 21,000 years, during the most recent sea-level rise) in both the map area and the larger Salt Point to Drakes Bay region, interpreted on the basis of the seismic-reflection data, and it identifies the Offshore of Point Reyes map area as lying within the Bodega Head–Tomales Point shelf, Point Reyes bar, and Bolinas shelf domains. Sheet 10 is a geologic map that merges onshore geologic mapping (compiled from existing maps by the California Geological Survey) and new offshore geologic mapping that is based on integration of high-resolution bathymetry and backscatter imagery (sheets 1, 2, 3), seafloor-sediment and rock samples (Reid and others, 2006), digital camera and video imagery (sheet 6), and high-resolution seismic-reflection profiles (sheet 8), as well as aerial-photographic interpretation of nearshore areas. The information provided by the map sheets, pamphlet, and data catalog have a broad range of applications. High-resolution bathymetry, acoustic backscatter, ground-truth-surveying imagery, and habitat mapping all contribute to habitat characterization and ecosystem-based management by providing essential data for delineation of marine protected areas and ecosystem restoration. Many of the maps provide high-resolution baselines that will be critical for monitoring environmental change associated with climate change, coastal development, or other forcings. High-resolution bathymetry is a critical component for modeling coastal flooding caused by storms and tsunamis, as well as inundation associated with longer term sea-level rise. Seismic-reflection and bathymetric data help characterize earthquake and tsunami sources, critical for natural-hazard assessments of coastal zones. Information on sediment distribution and thickness is essential to the understanding of local and regional sediment transport, as well as the development of regional sediment-management plans. In addition, siting of any new offshore infrastructure (for example, pipelines, cables, or renewable-energy facilities) will depend on high-resolution mapping. Finally, this mapping will both stimulate and enable new scientific research and also raise public awareness of, and education about, coastal environments and issues.

California↗

Biocomplexity in mangrove ecosystems

Mangroves are an ecological assemblage of trees and shrubs adapted to grow in intertidal environments along tropical coasts. Despite repeated demonstration of their economic and societal value, more than 50% of the world's mangroves have been destroyed, 35% in the past two decades to aquaculture and coastal development, altered hydrology, sea-level rise, and nutrient overenrichment. Variations in the structure and function of mangrove ecosystems have generally been described solely on the basis of a hierarchical classification of the physical characteristics of the intertidal environment, including climate, geomorphology, topography, and hydrology. Here, we use the concept of emergent properties at multiple levels within a hierarchical framework to review how the interplay between specialized adaptations and extreme trait plasticity that characterizes mangroves and intertidal environments gives rise to the biocomplexity that distinguishes mangrove ecosystems. The traits that allow mangroves to tolerate variable salinity, flooding, and nutrient availability influence ecosystem processes and ultimately the services they provide. We conclude that an integrated research strategy using emergent properties in empirical and theoretical studies provides a holistic approach for understanding and managing mangrove ecosystems.

Annual Review of Marine Science↗

Sediment waves on the Monterey fan levee: a preliminary physical interpretation.

Sediment waves on the deep ocean floor occur mostly on the lower continental rise on slopes of 1° or less. Previous studies show that their amplitude and wavelength vary greatly, but little is known about their shape in plan. A detailed survey of a 30-km 2 area of abyssal-depth sediment waves associated with the levee of the Monterey fan valley shows a pattern of sinuous crests and troughs with parallel, well-bedded internal structure. Material in the upper 1 m of sediment consists predominantly of bioturbated, muddy coccolith ooze. A single thin, silty horizon can be correlated between adjoining waves. On the basis of measured wave dimensions and an estimate of flow velocity we use a simple two-layer model for water movement to infer approximate flow parameters. The sediment waves are considered to be formed most likely by low-velocity (10 cm/s), low-concentration turbidity flows approximately 100–800 m thick. This interpretation emphasizes the role of low-speed, low-concentration turbidity currents in the downslope movement of fine-grained material. This type of transport—deposition regime explains the formation of sediment waves very well except for certain waves occurring on depositional ridges in the deep ocean.

Marine Geology↗

Natural resource condition assessment: Channel Islands National Park

The Natural Resource Condition Assessment (NRCA) Program aims to provide documentation about the current conditions of important Park natural resources through a spatially explicit, multidisciplinary synthesis of existing scientific data and knowledge. Findings from the NRCA will help Channel Islands National Park (CINP) managers to develop near-term management priorities. The central objectives of this assessment were to evaluate the current conditions and trends of key Park resources, identify important knowledge gaps, and determine key stressors and threats. Because a recent report provided an assessment of marine resources (Engle 2006), which constitute 50% of the park, this NRCA focused on terrestrial resources. For this NRCA, CINP resource managers identified that the greatest Park need was to know whether or not vegetation (primarily woody vegetation) is recovering on the Channel Islands and how this may be influencing recovery of the native terrestrial vertebrates. To address this, the CINP NRCA team evaluated the condition of island vegetation and vertebrate communities using both: 1) already available, summarized information from reports, theses, and journal articles and 2) new analyses of recently available, existing data collected on the islands. Descriptions of specific methods used to analyze available data by the NRCA team are provided within the assessment sections in Chapter 4 of this report. The Team used the Vital Signs indicators as identified by Fancy et al. (2009) for monitoring the condition of Natural Resources in U.S. National Parks. Using this framework, the focal study resource components were the five CINP islands, because these are the bio-geophysical resources of greatest interest to the CINP. Each of the islands has its own unique history of human impacts, ecological conditions, restoration efforts, and natural resource monitoring. The Team evaluated island scrub recovery by assessing changes over time in two metrics: 1) vegetation community structure (species composition, cover, and spatial extent), and 2) vertebrate abundance, relative to the reference condition of each island. The reference conditions for this NRCA were the particular island’s ecological state prior to European settlement or ranching, which represent the ecological state to which the NPS desires the park return. For each metric, the Team determined the Reference Conditions/Values, Current Condition, Trend, and Recovery Potential (based on a review of the literature and from the NRCA team’s analysis of newly available data), Threats and Stressors, Data Gaps, Overall Condition. A qualitative statement of overall current condition was created for each metric, after all data and literature relevant to the measures (i.e., vegetation and vertebrates) of each resource component (i.e., island) were reviewed and evaluated. All information gathered for this NRCA is available and managed by CINP, so that the compilation of resources would be available not only for the assessment team, but will be provided for future Park reference. Chapter 1 of this NRCA provides a descriptive background of NRCAs. Chapter 2 provides Park-wide natural resource background information, while Chapter 3 describes the overall methodological approach used in this assessment. Chapter 4 provides a detailed assessment of each island’s condition, which is then summarized Park-wide and for each island in Chapter 5. Based on both vegetation recovery and vertebrate population abundances, our assessment found Santa Cruz Island (SCI), Santa Rosa Island (SRI), San Miguel Island (SMI), and Anacapa Island (AI) to be, overall, in moderate condition and slowly recovering following the removal of non-native herbivores. The condition of Santa Barbara Island (SBI) is poor and remains in a state that is not likely to improve without assisted recovery by the Park. All islands have exhibited some level of native vegetation recovery, with most of the observed natural recovery occurring on SCI, SRI, SMI, and AI; very little recovery has occurred at present on SBI. Vegetation recovery is uneven across each island and largely limited to mesic areas, such as north-facing slopes. Areas that will likely require some assisted recovery efforts are those that are: at risk of erosion, isolated, lacking native seed banks, and plagued with high competition of non-native grasses and other invasives. Some plant communities, such as exposed upland vegetation on SRI, also have lower natural recovery potential and will likely require assisted recovery. The overall condition of the Park’s terrestrial island vertebrate species generally appears to be good and improving, with high potential for further recovery to reach pre-ranching era reference conditions. This is particularly true for vertebrates on SCI, SRI, and SMI. Although there are limited data for AI, the data that are available suggest that vertebrates on that island are in good condition and improving as well. However, the condition of SBI vertebrates is only moderate, with natural recovery potential being low, with many landbird species’ populations currently declining, extinct, or not improving. An overarching theme across the Park’s terrestrial island vertebrate populations is that many of them are in good condition because the particular animals are habitat generalists, so their population dynamics are not strongly tied to habitat conditions. However, those landbirds associated with riparian vegetation are not showing signs of recovery across the Park islands, and riparian areas appear to be one of the habitats with limited natural recovery potential on the islands. Overwhelmingly, the most critical data gap that emerged from our analysis was the lack of current vegetation maps for most of the islands (AI, SCI, SRI, SMI). The lack of this information made it difficult to assess spatial changes in island vegetation over time, and to relate those changes to observed changes in vertebrate species abundances. Therefore, we were limited in our spatial assessment of vegetation recovery for AI, SCI, SRI, and SMI, and were only able to relate the current vegetation with island landbird analysis for SBI. Another common theme across islands was the lack of information on best techniques for shrub reintroduction and recovery, and the success of invasive species removal and re-vegetation efforts. Abundance, distribution, and habitat affinities of reptiles and amphibians are poorly known for AI, SCI, SRI, and SMI, making it difficult to assess their population condition and trends, and their potential responses to shrub recovery. Mammal and landbird populations are reasonably well-sampled across most of the islands, but data are lacking for most vertebrates from AI, especially West and Middle AI where no vertebrate sampling occurs. The population status, cause of declines, and recovery needs are lacking for several landbird species across multiple islands, including loggerhead shrikes ( Lanius ludovicianus ssp.) on SCI and SRI, and Santa Cruz Island rufous crowned sparrows ( Aimophila ruficeps obscura ) on AI. Additionally, island song sparrows ( Melospiza melodia graminea ) remain extirpated on SBI and data are needed for assessing their recovery potential on the island. The potentially major threats facing the islands’ flora and fauna today are: areas of continued erosion, potential new non-native introductions, and climate change. The Park islands have already experienced warming over the last several decades due to human-induced climate change, and are projected to experience continued warming. These increasing stresses imposed by climate change may slow and inhibit natural recovery potentials for island fauna, and especially flora.

California↗

Shallow subsurface geology of the continental shelf, Gulf of the Farallones, California, and its relationship to surficial seafloor characteristics

The Gulf of the Farallones is located on a continental margin that is tectonically active and has experienced eustatic fluctuations of sea level throughout the Quaternary. Bathymetry of the Gulf suggests that it is different from the average continental shelf off California in that instead of a seafloor that slopes gently seaward from the shoreline to the shelf edge (dominantly west to southwest), much of the Gulf shelf slopes to the northwest, a direction that is subparallel to that of the adjacent mainland shoreline. Isobaths are oblique to shore-normal for much of the Gulf shelf as opposed to the more typical shore-parallel isobaths. This northwest trend is parallel to that of the offshore granitic outcrops, the Farallon Island ridge and Cordell Bank. 3.5 kHz shallow subsurface profiles show a regional unconformity (basal unconformity of this study) that truncates bedrock and typically is overlain by a very thin veneer (1-2 m or less) of acoustically transparent unconsolidated sediment. In places, the basal unconformity appears to be coincident with the seafloor. Where the basal unconformity is within 1-2 m of the seafloor, side-scan sonar reveals that either bedrock pierces the seafloor or numerous linear depressions dissect the shelf seafloor. Side-scan sonar shows that the central part of the study area is characterized by numerous linear depressions that are on the order of 1-3 m deep, several meters to 5 km in length, and from 250 m to 2 km in width. The only Holocene unconsolidated sediment in excess of 1-2 m that has accumulated on the Gulf shelf is located where the bedrock surface is topographically depressed. The topographic lows are situated south of the Point Reyes headland and southwest of the Golden Gate. The sediment deposits that overlie these lows attain thicknesses up to 15-20 m; however, their average thickness is less than 10 m. Structure contours on the basal unconformity surface, essentially the top of the bedrock platform, also show that it is topographically high at its southern end and low at its northern end; the slope of the platform is therefore to the northwest. The seafloor mimics the attitude of the bedrock platform owing to the lack of appreciable sediment cover and hence also slopes northwest. This accounts for the oblique to shore-normal orientation of isobaths in the Gulf and the northwestward slope of the seafloor. The results of this investigation suggest that eustatic sea level fluctuations in conjunction with local tectonics had a profound effect on the deposition, erosion, and preservation of sediment on the Gulf shelf throughout the Quaternary and that the shallow subsurface greatly influences many aspects of the present surficial morphology.

Marine Geology↗

Biological correlates of sea urchin recruitment in kelp forest and urchin barren habitats

Shifts between the alternate stable states of sea urchin barren grounds and kelp forests correspond to sea urchin density. In the Aleutian Archipelago, green sea urchins Strongylocentrotus polyacanthus are the dominant herbivores that graze kelp forests. Sea urchin recruitment is an important driver that influences sea urchin density, particularly in the absence of top-down control from a keystone predator such as the sea otter Enhydra lutris . To understand how the biological community may influence patterns of sea urchin recruitment, we compared sea urchin recruit (size ≤20 mm) densities with biomass of other benthic organisms in both barren ground and kelp forest habitats at 9 islands across the Aleutian Archipelago. Patterns of biological community structure between the 2 habitats did not explain patterns of sea urchin recruits; however, the same 10 specific taxa were found to correlate with sea urchin recruits in each habitat. Taxa that showed strong positive correlations included Codium, Constantinea, Schizymenia, and hydrozoans, while strong negative correlations were observed with Pachyarthron and Pugettia . Weak positive correlations were observed with Alcyonidium and ascidiaceans in both habitats, while weak variable relationships were detected with Polysiphonia and Corallina between habitats. The observed species-specific relationships may be due to small sea urchin displacement by larger conspecifics, larval responses to settlement cues, post-settlement survival via biogenic refugia, or potentially predation. These potential species-specific interactions were apparent, regardless of habitat, and it can be inferred that they would be preserved in the presence or absence of keystone predation.

Alaska↗

Comparison of clast frequency and size in the resurge deposits at the Chesapeake Bay impact structure (Eyreville A and Langley cores): Clues to the resurge process

Collapse and inward slumping of unconsolidated sedimentary strata expanded the Chesapeake Bay impact structure far beyond its central basement crater. During crater collapse, sediment-loaded water surged back to fill the crater. Here, we analyze clast frequency and granulometry of these resurge deposits in one core hole from the outermost part of the collapsed zone (i.e., Langley) as well as a core hole from the moat of the basement crater (i.e., Eyreville A). Comparisons of clast provenance and flow dynamics show that at both locations, there is a clear change in clast frequency and size between a lower unit, which we interpret to be dominated by slumped material, and an upper, water-transported unit, i.e., resurge deposit. The contribution of material to the resurge deposit was primarily controlled by stripping and erosion. This includes entrainment of fallback ejecta and sediments eroded from the surrounding seafloor, found to be dominant at Langley, and slumped material that covered the annular trough and basement crater, found to be dominant at Eyreville. Eyreville shows a higher content of crystalline clasts than Langley. There is equivocal evidence for an anti-resurge from a collapsing central water plume or, alternatively, a second resurge pulse, as well as a transition into oscillating resurge. The resurge material shows more of a debris-flow-like transport compared to resurge deposits at some other marine target craters, where the ratio of sediment to water has been relatively low. This result is likely a consequence of the combination of easily disaggregated host sediments and a relatively shallow target water depth.

Chesapeake Bay↗

Cruise Report; RV Moana Wave cruise M1-01-GM; the bathymetry and acoustic backscatter of the mid shelf to upper slope off Panama City, Florida, northeastern Gulf of Mexico; September 3, through October 12, 2001, Panama City, FL to Panama City, FL

A zone of deep-water reefs is thought to extend from the mid and outer shelf south of Mississippi and Alabama to at least the northwestern Florida shelf off Panama City, Florida (Figure 1, 67kb). The reefs off Mississippi and Alabama are found in water depths of 60 to 120 m (Ludwick and Walton, 1957; Gardner et al., in press) and were the focus of a multibeam echosounder (MBES) mapping survey by the U.S. Geological Survey (USGS) in 2000 (Gardner et al., 2000; in press). If this deep-water-reef trend does exist along the northwestern Florida shelf, then it is critical to determine the accurate geomorphology and type of the reefs that occur because of their importance as benthic habitats for fisheries. Precisely georeferenced high-resolution mapping of bathymetry is a fundamental first step in the study of areas suspected to be critical habitats. Morphology is thought to be critical to defining the distribution of dominant demersal plankton/planktivores communities. Fish faunas of shallow hermatypic reefs have been well studied, but those of deep ahermatypic reefs have been relatively ignored. The ecology of deep-water ahermatypic reefs is fundamentally different from hermatypic reefs because autochthonous intracellular symbiotic zooxanthellae (the carbon source for hermatypic corals) do not form the base of the trophic web in ahermatypic reefs. Instead, exogenous plankton, transported to the reef by currents, serves as the primary carbon source. Thus, one of the principle uses of the morphology data will be to identify whether any reefs found are hermatypic or ahermatypic in origin. Community structure and trophodynamics of demersal fishes of the outer continental of the northeastern Gulf of Mexico presently are the focus of a major USGS reseach project. A goal of the project is to answer questions concerning the relative roles played by morphology and surficial geology in controling biological differentiation. Deep-water reefs are important because they are fish havens, key spawning sites, and are critical early larval and juvenile habitats for economically important sport/food fishes. It is known that deep-water reefs function as a key source for re-population (via seasonal and ontogenetic migration) of heavily impacted inshore reefs. The deep-water reefs south of Mississippi and Alabama support a lush fauna of ahermatypic hard corals, soft corals, black corals, sessile crinoids and sponges, that together form a living habitat for a well-developed fish fauna. The fish fauna comprises typical Caribbean reef fishes and Carolinian shelf fishes, plus epipelagic fishes, and a few deep-sea fishes. The base of the megafaunal invertebrate food web is plankton, borne by essentially continuous semi-laminar currents generated by eddies, spawned off the Loop Current, that periodically travel across the shelf edge. A few, sidescan-sonar surveys have been made of areas locally identified as Destin Pinnacles, Steamboat Lumps Marine Reserve (Koenig et al., 2000; Scanlon, et al., 2000; 2001), Twin Ridges (Briere, et al., 2000; Scanlon, et al., 2000), and Madison-Swanson Marine Reserve (Koenig et al., 2000; Scanlon, et al., 2000; 2001). However, no quantitative and little qualitative information about the geomorphology and surficial geology can be gained from these data. Existing bathymetry along the northwestern Florida shelf suggests the existence of areas of possible isolated deep-water reefs. NOAA bathymetric maps NOS NH16-9 and NG16-12 show geomorphic expressions that hint of the presence of reefs in isolated areas rather than in a continuous zone. There has been no systematic, high-resolution bathymetry collected in this area, prior to this cruise. After the successful mapping of the deep-water reefs on the Mississippi and Alabama shelf (Gardner et al., 2000; in press), a partnership composed of the USGS, Minerals Management Service, and NOAA was formed to continue the deep-reef mapping to the northwest Florida mid shelf and upper slope. This cruise is the first fruit of that partnership.

Florida↗

Users' guide to system dynamics model describing Coho salmon survival in Olema Creek, Point Reyes National Seashore, Marin County, California

The system dynamics model described in this report is the result of a collaboration between U.S. Geological Survey (USGS) scientists and National Park Service (NPS) San Francisco Bay Area Network (SFAN) staff, whose goal was to develop a methodology to integrate inventory and monitoring data to better understand ecosystem dynamics and trends using salmon in Olema Creek, Marin County, California, as an example case. The SFAN began monitoring multiple life stages of coho salmon (Oncorhynchus kisutch) in Olema Creek during 2003 (Carlisle and others, 2013), building on previous monitoring of spawning fish and redds. They initiated water-quality and habitat monitoring, and had access to flow and weather data from other sources. This system dynamics model of the freshwater portion of the coho salmon life cycle in Olema Creek integrated 8 years of existing monitoring data, literature values, and expert opinion to investigate potential factors limiting survival and production, identify data gaps, and improve monitoring and restoration prescriptions. A system dynamics model is particularly effective when (1) data are insufficient in time series length and/or measured parameters for a statistical or mechanistic model, and (2) the model must be easily accessible by users who are not modelers. These characteristics helped us meet the following overarching goals for this model: Summarize and synthesize NPS monitoring data with data and information from other sources to describe factors and processes affecting freshwater survival of coho salmon in Olema Creek. Provide a model that can be easily manipulated to experiment with alternative values of model parameters and novel scenarios of environmental drivers. Although the model describes the ecological dynamics of Olema Creek, these dynamics are structurally similar to numerous other coastal streams along the California coast that also contain anadromous fish populations. The model developed for Olema can be used, at least as a starting point, for other watersheds. This report describes each of the model elements with sufficient detail to guide the primary target audience, the NPS resource specialist, to run the model, interpret the results, change the input data to explore hypotheses, and ultimately modify and improve the model. Running the model and interpreting the results does not require modeling expertise on the part of the user. Additional companion publications will highlight other aspects of the model, such as its development, the rationale behind the methodological approach, scenario testing, and discussions of its use. System dynamics models consist of three basic elements: stocks , flows , and converters . Stocks are measurable quantities that can change over time, such as animal populations. Flows are any processes or conditions that change the quantity in a stock over time (Ford, 1999), are expressed in the model as a rate of change, and are diagrammed as arrows to or from stocks. Converters are processes or conditions that change the rate of flows. A converter is connected to a flow with an arrow indicating that it alters the rate of change. Anything that influences the rate of change (such as different environmental conditions, other external factors, or feedbacks from other stocks or flows) is modeled as a converter. For example, the number of fish in a population is appropriately modeled as a stock. Mortality is modeled as a flow because it is a rate of change over time used to determine the number of fish in the population. The density-dependent effect on mortality is modeled as a converter because it influences the rate of morality. Together, the flow and converter change the number, or stock, of juvenile coho. The instructions embedded in the stocks, flows, converters, and the sequence in which they are linked are processed by the simulation software with each completed sequence composing a model run. At each modeled time step within the model run, the stock counts will go up, down, or stay the same based on the modeled flows and the influence of converters on those flows. The model includes a user-friendly interface to change model parameters, which allows park staff and others to conduct sensitivity analyses, incorporate future knowledge, and implement scenarios for various future conditions. The model structure incorporates place holders for relationships that we hypothesize are significant but data are currently lacking. Future climate scenarios project stream temperatures higher than any that have ever been recorded at Olema Creek. Exploring climate change impacts on coho survival is a high priority for park staff, therefore the model provides the user with the option to experiment with hypothesized effects and to incorporate effects based on future observations.

California↗

Geologic framework and petroleum potential of the Atlantic Coastal Plain and continental shelf, with a section on stratigraphy

The Atlantic Coastal Plain and Continental Shelf of North America is represented by a belt of Mesozoic and Cenozoic rocks, 150 to 300 miles wide and 2,400 miles long, extending from southern Florida to the Grand Banks of Newfoundland. This belt of Mesozoic and Cenozoic rocks encompasses an area of about 400,000 to 450,000 square miles, more than three-fourths of which is covered by the Atlantic Ocean. The volume of Mesozoic and Cenozoic rocks beneath the Atlantic Coastal Plain and Continental Shelf exceeds 450,000 cubic miles, perhaps by a considerable amount. More than one-half of this is seaward far enough to contain marine source rocks in sufficient proportion to attract exploration for oil. A larger fraction, perhaps three-quarters of the volume, may be of interest in exploration for gas. The Coastal Plain consists of land between the crystalline piedmont of the Appalachian System and mean low-tide from southern Florida to the tip of Long Island plus a few small offshore islands and the Cape Cod Peninsula. This is an area of more than 100,000 square miles. The Continental Shelf extends from mean law-tide to the break marking the beginning of the continental rise, which is somewhat less than 600 feet in depth at most places. It is a gently sloping platform, about 350,000 square miles in area, that widens from less than 3 miles off southern Florida to about 285 miles off Newfoundland. The Blake Plateau occupies an area of about 70,000 square miles between the 500 and 5,000-foot bottom contours from the Cape Hatteras vicinity to the northernmost bank of the Bahamas. It has a gentle slope with only minor irregularities and scattered patches of Recent sediments. Both gravity and magnetic anomalies along the Atlantic Coast reflect primarily compositional differences at considerable depths in the earth's crust, but are related to some extent to the structure and composition of the Coastal Plain sedimentary rocks and shallow basement. Four alternating belts of predominantly positive and predominantly negative Bouguer gravity anomalies extend diagonally across the region from southwest to northeast. These correspond roughly with the continental rise and slope, the Continental Shelf and Coastal Plain, the Appalachian Mountain System front, and the Piedmont Plateau-Blue Ridge-Appalachian Basin region.

Atlantic Coastal Plain↗

Aquifers of Arkansas: protection, management, and hydrologic and geochemical characteristics of groundwater resources in Arkansas

Sixteen aquifers in Arkansas that currently serve or have served as sources of water supply are described with respect to existing groundwater protection and management programs, geology, hydrologic characteristics, water use, water levels, deductive analysis, projections of hydrologic conditions, and water quality. State and Federal protection and management programs are described according to regulatory oversight, management strategies, and ambient groundwater-monitoring programs that currently (2013) are in place for assessing and protecting groundwater resources throughout the State. Physical attributes, groundwater geochemistry, and groundwater quality are described for each of the 16 aquifers of the State. Information in regard to the hydrology and geochemistry of each of the aquifers is summarized from about 550 historical and recent publications. Additionally, more than 8,000 sites with groundwater-quality data were obtained from the U.S. Geological Survey National Water Information System and the Arkansas Department of Environmental Quality databases and entered into a spatial database to investigate distribution and trends in chemical constituents for each of the aquifers. The 16 aquifers of the State were divided into two major physiographic regions of the State: the Coastal Plain Province (referred to as Coastal Plain) of eastern and southern Arkansas, which includes 11 of the 16 aquifers, and the Interior Highlands Division (referred to as Interior Highlands) of western Arkansas, which includes the remaining 5 aquifers. The 11 aquifers in the Coastal Plain consist of various geologic units that are Cenozoic in age and consist primarily of Cretaceous, Tertiary, and Quaternary sands, gravels, silts, and clays. Groundwater in the Coastal Plain represents one of the most valuable natural resources in the State, driving the economic engines of agriculture, while also supplying abundant water for commercial, industrial, and public-supply use. In terms of age from youngest to oldest, the aquifers of the Coastal Plain include Quaternary alluvial aquifers, including the Mississippi River Valley alluvial aquifer (the most important aquifer in Arkansas in terms of volume of use and economic benefits), the Jackson Group (a regional confining unit that served for decades as an important source of domestic supply), and the Cockfield, Sparta, Cane River, Carrizo, Wilcox, Nacatoch, Ozan, Tokio, and Trinity aquifers. The Mississippi River Valley alluvial aquifer accounts for approximately 94 percent of all groundwater used in the State, and the aquifer is used primarily for irrigation purposes. The Sparta aquifer is the second most important aquifer in terms of use, and the aquifer was used in the past dominantly as a source of public and industrial supply, although increasing irrigation use is occurring because of critically declining water levels in the Mississippi River Valley alluvial aquifer. Other aquifers of the Coastal Plain generally are used as important local sources of domestic, industrial, and public supply, in addition to other minor uses. Water quality generally is good for all aquifers of the Coastal Plain, except for elevated iron concentrations and localized areas of high salinity. The high salinity results from intrusion from underlying formations, evapotranspiration processes in areas of low recharge, and inadequate flushing in downgradient areas of residual salinity from deposition in marine environments. Trends in the spatial distribution of individual chemical constituents are related to position along the flow path for most aquifers of the Coastal Plain. These trends include elevated iron and nitrate concentrations with lower pH values and dissolved solids in groundwater from the outcrop areas, transitioning to lower iron and nitrate (related to changes in redox) and higher pH and dissolved solids (dominantly from the dissolution of carbonate minerals) in groundwater downgradient from outcrop areas. Groundwater generally trended from a calcium- to a sodium-bicarbonate water type with increasing cation exchange along the flow path. The Interior Highlands of western Arkansas has less reported groundwater use than other areas of the State, reflecting a combination of factors. These factors include prevalent and increasing use of surface water, less intensive agricultural uses, lower population and industry densities, lesser potential yield of the resource, and lack of detailed reporting. The overall low yields of aquifers of the Interior Highlands result in domestic supply as the dominant use, with minor industrial, public, and commercial-supply use. Where greater volumes are required for growth of population and industry, surface water is the greatest supplier of water needs in the Interior Highlands. The various aquifers of the Interior Highlands generally occur in shallow, fractured, well-indurated, structurally modified bedrock of this mountainous region of the State, as compared to the relatively flat-lying, unconsolidated sediments of the Coastal Plain. In terms of age from youngest to oldest, the aquifers of the Interior Highlands include: the Arkansas River Valley alluvial aquifer, the Ouachita Mountains aquifer, the Western Interior Plains confining system, the Springfield Plateau aquifer, and the Ozark aquifer. Spatial trends in groundwater geochemistry in the Interior Highlands differ greatly from trends noted for aquifers of the Coastal Plain. In the Coastal Plain, the prevalence of long regional flow paths results in regionally predictable and mappable geochemical changes along the flow paths. In the Interior Highlands, short, topographically controlled flow paths (from hilltops to valleys) within small watersheds represent the predominant groundwater-flow system. As such, dense data coverage from numerous wells would be required to effectively characterize these groundwater basins and define small-scale geochemical changes along any given flow path for aquifers of the Interior Highlands. Changes in geochemistry generally were related to rock type and residence time along individual flow paths. Dominant changes in geochemistry for the Ouachita Mountains aquifer and the Western Interior Plains confining system are attributed to rock/water interaction and changes in redox zonation along the flow path. In these areas, groundwater evolves along flow paths from a calcium- to a sodium-bicarbonate water type with increasing reducing conditions resulting in denitrification, elevated iron and manganese concentrations, and production of methane in the more geochemically evolved and strongest reducing conditions. In the Ozark and Springfield Plateau aquifers, rapid influx of surface-derived contaminants, especially nitrogen, coupled with few to no attenuation processes was attributed to the karst landscape developed on Mississippian- and Ordovician-age carbonate rocks of the Ozark Plateaus. Increasing nitrate concentrations are related to increasing agricultural land use, and areas of mature karst development result in higher nitrate concentrations than areas with less karst features.

Arkasas↗

Arctic Alaska’s Lower Cretaceous (Hauterivian and Barremian) mudstone succession—Linking lithofacies, texture, and geochemistry to marine processes

We present new images and descriptions of the lithofacies and organic facies of the pebble shale unit and lower part of the Hue Shale (Lower Cretaceous) of Arctic Alaska at a high magnification that illustrates their textural characteristics. Our aims were to describe and determine the distribution of facies in these petroleum source rocks and to identify the processes that formed them. We sampled at high-resolution and applied new petrographic techniques combined with scanning electron microscopy and geochemical analyses to samples collected from three widely spaced sections—located in exposures along the Canning River and continuous core from the Mikkelsen Bay State 1 and Orion 1 wells. Results from these three locations indicate that this succession consists primarily of clay-rich mudstones that are variously silt- or sand-bearing and clay-dominated mudstones that exhibit mainly relict, 2–5 millimeter thick bedding and common but variable microbioturbation, rare macrobioturbation, and common fabrics of pelleted clay and silt. These mudstones contain rare, poorly sorted, silt-rich basal laminae that are often discontinuous and have wavy, sharp bases and crude upward fining. In addition, mud-supported, outsized clasts (dropstones) of fine sand to pebble size are present throughout the succession as isolated clasts or in clusters. We interpret these textures and much of this succession to result from intermittent deposition by suspension settling from melting seasonal sea ice—sometimes sediment-laden—and associated primary productivity. Overall, this mudstone succession fines and deepens upward from the pebble shale unit into the Hue Shale. In the Hue Shale of the Orion well, however, different processes intermittently deposited thin, discrete intervals of coarser sediment that probably represent deposition from density currents. Also in the Hue Shale of the Orion well, several thicker sandstone and silt-dominated mudstone units with discordant, scoured bases and cut and fill structures represent erosion during higher energy events such as major storms. Other lithofacies within the succession are graded tuffs/bentonites and tuffaceous/bentonitic mudstones from episodic volcanic ash falls; these are abundant in the Hue Shale, and very rare in the pebble shale unit of the two wells. Organic-carbon rich strata associated with volcanic ash intervals of the pebble shale unit and Hue Shale in the Mikkelsen 1 well have some of the best petroleum source rock potential determined for this succession. Authigenic pyrite and carbonate-cement-dominated mudstone are also present in both units of all three sections. The carbonate-cemented units indicate breaks in sedimentation and are common in the Hue Shale and in sections of the pebble shale unit interpreted to be more distal, such as along the Canning River. Our results document the variation in facies and textures of the Hauterivian and Barremian Lower Cretaceous mudstone succession of Arctic Alaska. Comparison of these characteristics to the products of modern processes on the North Slope of Alaska, in the Beaufort Sea, and elsewhere suggest that this succession formed primarily from depositional processes related to seasonal sea ice with intermittent fluvial-sourced sediment deposited by density currents and episodic erosion and reworking by storms and other currents.

Alaska↗