SEARCH · Geology Reports

Results for “Marine Ecology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 829 records · Page 46Linked to original sources

USGS2007

Polymorphic microsatellite DNA markers for the Florida manatee (Trichechus manatus latirostris)

Florida manatees (Trichechus manatus latirostris) are marine mammals that inhabit the coastal waters and rivers of the southeastern USA, primarily Florida. Previous studies have shown that Florida manatees have low mitochondrial DNA variability, suggesting that nuclear DNA loci are necessary for discriminatory analyses. Here we report 10 polymorphic microsatellite loci with an average of 4.2 alleles per locus, and average heterozygosity of 50.1%. These loci have been developed for use in population studies, parentage assignment, and individual identification. ?? 2007 Blackwell Publishing Ltd.

Molecular Ecology Notes↗

USGS2021

A socio-ecological imperative for broadening participation in coastal and estuarine research and management

For most of the scientific disciplines associated with coastal and estuarine research, workforce representation does not match the demographics of communities we serve, especially for Black, Hispanic or Latino, and Indigenous peoples. This essay provides an overview of this inequity and identifies how a scientific society can catalyze representational, structural, and interactional diversity to achieve greater inclusion. Needed changes go beyond representational diversity and require an intentional commitment to build capacity through inclusivity and community engagement by supporting anti-racist policies and actions. We want to realize a sense of belonging on the part of scientists in society at large and enable research pursuits through a lens of social justice in service of coastal communities. Minimally, this framework offers an avenue for increased recruitment of individuals from more diverse racial and ethnic identities. More broadly, the mechanisms described here aim to create a culture in scientific societies in which social justice, driven by anti-racist actions, produces systemic change in how members of scientific societies approach, discuss, and address issues of inequity. We have written this essay for members of the coastal and marine science community who are interested in change. We aim to call in new voices, allies, and champions to this work.

Estuaries and Coasts↗

USGS1998

Extremely acid Permian lakes and ground waters in North America

Evaporites hosted by red beds (red shales and sandstones), some 275-265 million years old, extend over a large area of the North American mid- continent. They were deposited in non-marine saline lakes, pans and mud- flats, settings that are typically assumed to have been alkaline. Here we use laser Raman microprobe analyses of fluid inclusions trapped in halites from these Permian deposits to argue for the existence of highly acidic (pH < 1) lakes and ground waters. These extremely acidic systems may have extended over an area of 200,000 km2. Modern analogues of such systems may be natural acid lake and groundwater systems (pH ~2-4) in southern Australia. Both the ancient and modern acid systems are characterized by closed drainage, arid climate, low acid-neutralizing capacity, and the oxidation of minerals such as pyrite to generate acidity. The discovery of widespread ancient acid lake and groundwater systems demands a re-evaluation of reconstructions of surface conditions of the past, and further investigations of the geochemistry and ecology of acid systems in general.

Nature↗

USGS2002

Effects of colony relocation on diet and productivity of Caspian terns

We investigated the efficacy of management to reduce the impact of Caspian tern ( Sterna caspia ) predation on survival of juvenile salmonids (Oncorhynchus spp.) in the Columbia River estuary. Resource managers sought to relocate approximately 9,000 pairs of terns nesting on Rice Island (river km 34) to East Sand Island (river km 8), where terns were expected to prey on fewer juvenile salmonids. Efforts to attract terns to nest on East Sand Island included creation of nesting habitat, use of social attraction techniques, and predator control, with concurrent efforts to discourage terns from nesting on Rice Island. This approach was successful in completely relocating the tern colony from Rice Island to East Sand Island by the third breeding season. Juvenile salmonids decreased and marine forage fishes (i.e., herring, sardine, anchovy, smelt, surfperch, Pacific sand lance) increased in the diet of Caspian terns nesting on East Sand Island, compared with terns nesting on Rice Island. During 1999 and 2000, the diet of terns nesting on Rice Island consisted of 77% and 90% juvenile salmonids, respectively, while during 1999, 2000, and 2001, the diet of terns nesting on East Sand Island consisted of 46%, 47%, and 33% juvenile salmonids, respectively. Nesting success of Caspian terns was consistently and substantially higher on East Sand Island than on Rice Island. These results indicate that relocating the Caspian tern colony was an effective management action for reducing predation on juvenile salmonids without harm to the population of breeding terns, at least in the short term. The success of this management approach largely was a consequence of the nesting and foraging ecology of Caspian terns: the species shifts breeding colony sites frequently in response to changing habitats, and the species is a generalist forager, preying on the most available forage fish near the colony.

Oregon, Washington↗

USGS2021

Red knot stopover population size and migration ecology at Delaware Bay, USA, 2021

Red Knots ( Calidris canutus rufa ) stop at Delaware Bay during northward migration to feed on eggs of horseshoe crabs ( Limulus polyphemus ). The northward migration of C. c. rufa coincides with the spawning of horseshoe crabs whose eggs are the perfect food for a migrating Red Knot (Karpanty et al. 2006, Haramis et al. 2007). Horseshoe crabs are therefore an important food resource for Red Knots as well as other shorebirds at Delaware Bay. Horseshoe crabs have been harvested since at least 1990 for use as bait in American eel ( Anguilla rostrata ) and whelk ( Busycon ) fisheries (Kreamer and Michels 2009). In the late 1990s and early 2000s the number of Red Knots found at Delaware Bay declined dramatically from ~50,000 to ~13,000 (Niles et al. 2008). At the same time the number of horseshoe crabs harvested also declined and avian conservation biologists hypothesized that unregulated harvest of horseshoe crabs from Delaware Bay in the 1990s prevented sufficient refueling during stopover for successful migration to the breeding grounds, nesting, and survival for the remainder of the annual cycle (McGowan et al. 2011). The harvest of horseshoe crabs in the Delaware Bay region has been managed by the Atlantic States Marine Fisheries Commission (ASMFC) since 2012 using an Adaptive Resource Management (ARM) framework (McGowan et al. 2015b). The ARM framework was designed to constrain the harvest so that number of spawning crabs would not limit the number of Red Knots stopping at Delaware Bay during migration. This management framework to achieve multiple objectives requires an estimate each year of both the crab population and the Red Knot stopover population size to inform harvest recommendations (McGowan et al. 2015a). We have estimated the stopover population size using mark-resight data on individually-marked birds and a Jolly-Seber model for open populations since 2011.

Delaware, New Jersey↗

USGS2018

The effects of tropical cyclone-generated deposition on the sustainability of the Pearl River marsh, Louisiana: The importance of the geologic framework

Shoreline retreat is a tremendously important issue along the coast of the northern Gulf of Mexico, especially in Louisiana. Although this marine transgression results from a variety of causes, the crucial factor is the difference between marsh surface elevation and rising sea levels. In most cases, the primary cause of a marsh's inability to keep up with sea level is the lack of input of inorganic material. Although tropical cyclones provide an important source of such sediment, little effort has been made to determine the point of origin of the deposited material. In this study we use sedimentary, geochemical and biogeochemical data to identify the bed of the Pearl River and/or Lake Borgne as the source of a ~5 cm thick clastic layer deposited on the surface of the Pearl River marsh on the Louisiana/Mississippi border. Radiochemical chronologies and sedimentary evidence indicate that this layer was associated with the passage of Hurricane Katrina in 2005. As this material would otherwise have been lost to the system, this deposition indicates a net gain to marsh surface elevation. Accretion rates, determined from 137Cs and 14C profiles and the use of the Katrina layer as a stratigraphic marker, indicate that short-term (~50 years) rates are as much as an order of magnitude higher than the long- term (1000s of years) rates. We suggest that the marsh's geologic setting in an incised river valley with steep vertical constraints and a large fluvial discharge, promotes rapid accretion rates, with rates accelerating as the sea moves inland, due to extended hydroperiods and the input of clastic material from both the marine and terrestrial sides. These rates are especially large when compared to accretion occurring in the more common open marshes fringing the Gulf that lack fluvial input. The difference is particularly large when related to marsh recovery/regrowth following the deposition of thick hurricane-generated clastic layers. Given the number of similar incised river valleys along the Gulf Coast, we believe that understanding the processes controlling marsh accretion in such environments is essential in evaluating marsh sustainability on a regional basis.

Louisiana↗

USGS2020

Machine learning identifies a strong association between warming and reduced primary productivity in an oligotrophic ocean gyre

Phytoplankton play key roles in the oceans by regulating global biogeochemical cycles and production in marine food webs. Global warming is thought to affect phytoplankton production both directly, by impacting their photosynthetic metabolism, and indirectly by modifying the physical environment in which they grow. In this respect, the Bermuda Atlantic Time-series Study (BATS) in the Sargasso Sea (North Atlantic gyre) provides a unique opportunity to explore effects of warming on phytoplankton production across the vast oligotrophic ocean regions because it is one of the few multidecadal records of measured net primary productivity (NPP). We analysed the time series of phytoplankton primary productivity at BATS site using machine learning techniques (ML) to show that increased water temperature over a 27-year period (1990–2016), and the consequent weakening of vertical mixing in the upper ocean, induced a negative feedback on phytoplankton productivity by reducing the availability of essential resources, nitrogen and light. The unbalanced availability of these resources with warming, coupled with ecological changes at the community level, is expected to intensify the oligotrophic state of open-ocean regions that are far from land-based nutrient sources.

Scientific Reports↗

USGS2015

Dreissenid mussel research priorities workshop

Currently, dreissenid mussels have yet to be detected in the northwestern part of the United States and western Canada. Infestation of one of the jurisdictions within the mussel-free Pacific Northwest would likely have significant economic, societal and environmental implications for the entire region. Understanding the biology and environmental tolerances of dreissenid mussels, and effectiveness of various management strategies, is key to prevention. On November 4-5, 2015, the Aquatic Bioinvasion Research and Policy Institute and the Center for Lakes and Reservoirs at Portland State University, the US Geological Survey, and the Pacific States Marine Fisheries Commission, convened a Dreissenid Mussel Research Priorities Workshop funded by the Great Northern Landscape Conservation Cooperative. The purpose of the workshop was to review dreissenid research priorities in the 2010 Quagga-Zebra Mussel Action Plan for Western U.S. Waters, reassess those priorities, incorporate new information and emerging trends, and develop priorities to strategically focus research efforts on zebra and quagga mussels in the Pacific Northwest and ensure that future research is focused on the highest priorities. It is important to note that there is some repetition among dreissenid research priority categories (e.g., prevention, detection, control, monitoring, and biology). Workshop participants with research experience in dreissenid mussel biology and management were identified by a literature review. State and federal agency managers were also invited to the workshop to ensure relevancy and practicality of the workshop outcomes. A total of 28 experts (see sidebar) in mussel biology, ecology, and management attended the workshop.

Conference Paper↗

USGS2002

Archive of chirp subbottom data collected during USGS cruise ORGN00005, northeastern Gulf of Mexico, 15 February-2 March 2000

In 1999, the Gulf of Mexico Fishery Management Council recommended that NOAA 's National Marine Fisheries Service establish two approximately 11-square-mile areas on the shelf edge in the northeastern Gulf of Mexico as no-fishing areas. One of the areas, the Madison-Swanson Marine Protected Area ( MPA ) lies about 100 km south of Panama City, Florida. The second area, Steamboat Lumps MPA lies about 150 km SSE of Madison-Swanson. The high-resolution seismic-reflection data contained herein were collected as part of a larger study of the effectiveness of no-fishing reserves in protecting grouper spawning aggregations. These subbottom profiles will be used in conjunction with other data to map the seafloor geology and the character and extent of benthic habitats within and surrounding the two MPAs. They show the shape and acoustic impedence of the seafloor and the thicknesses and orientations of shallow subsurface horizons. These data may be helpful in the following applications: choosing biological monitoring sites management decisions in the MPA s choosing sites for future MPA s studies of paleo-sealevel studies of the inter-relationships between seafloor geology and benthic ecology studies of sedimentary geology and geologic framework of the northeastern Gulf of Mexico

Open-File Report↗

USGS2008

Variability of community interaction networks in marine reserves and adjacent exploited areas

Regional and small-scale local oceanographic conditions can lead to high variability in community structure even among similar habitats. Communities with identical species composition can depict distinct networks due to different levels of disturbance as well as physical and biological processes. In this study we reconstruct community networks in four different areas off the Oregon Coast by matching simulated communities with observed dynamics. We compared reserves with harvested areas. Simulations suggested that different community networks, but with the same species composition, can represent each study site. Differences were found in predator-prey interactions as well as non-predatory interactions between community members. In addition, each site can be represented as a set of models, creating alternative stages among sites. The set of alternative models that characterize each study area depicts a sequence of functional responses where each specific model or interaction structure creates different species composition patterns. Different management practices, either in the past or of the present, may lead to alternative communities. Our findings suggest that management strategies should be analyzed at a community level that considers the possible consequences of shifting from one community scenario to another. This analysis provides a novel conceptual framework to assess the consequences of different management options for ecological communities. ?? 2008 Elsevier B.V. All rights reserved.

Fisheries Research↗

USGS2012

Adaptive strategies and life history characteristics in a warming climate: salmon in the Arctic?

In the warming Arctic, aquatic habitats are in flux and salmon are exploring their options. Adult Pacific salmon, including sockeye (Oncorhynchus nerka), coho (O. kisutch), Chinook (O. tshawytscha), pink (O. gorbuscha) and chum (O. keta) have been captured throughout the Arctic. Pink and chum salmon are the most common species found in the Arctic today. These species are less dependent on freshwater habitats as juveniles and grow quickly in marine habitats. Putative spawning populations are rare in the North American Arctic and limited to pink salmon in drainages north of Point Hope, Alaska, chum salmon spawning rivers draining to the northwestern Beaufort Sea, and small populations of chum and pink salmon in Canada’s Mackenzie River. Pacific salmon have colonized several large river basins draining to the Kara, Laptev and East Siberian seas in the Russian Arctic. These populations probably developed from hatchery supplementation efforts in the 1960’s. Hundreds of populations of Arctic Atlantic salmon (Salmo salar) are found in Russia, Norway and Finland. Atlantic salmon have extended their range eastward as far as the Kara Sea in central Russian. A small native population of Atlantic salmon is found in Canada’s Ungava Bay. The northern tip of Quebec seems to be an Atlantic salmon migration barrier for other North American stocks. Compatibility between life history requirements and ecological conditions are prerequisite for salmon colonizing Arctic habitats. Broad-scale predictive models of climate change in the Arctic give little information about feedback processes contributing to local conditions, especially in freshwater systems. This paper reviews the recent history of salmon in the Arctic and explores various patterns of climate change that may influence range expansions and future sustainability of salmon in Arctic habitats. A summary of the research needs that will allow informed expectation of further Arctic colonization by salmon is given.

Environmental Biology of Fishes↗

USGS2022

A biological condition gradient for coral reefs in the US Caribbean Territories: Part I. Coral narrative rules

As coral reef condition and sustainability continue to decline worldwide, losses of critical habitat and their ecosystem services have generated an urgency to understand and communicate reef response to management actions, environmental contamination, and natural disasters. Increasingly, coral reef protection and restoration programs emphasize the need for robust assessment tools for protecting high-quality waters and establishing conservation goals. Of equal importance is the need to communicate assessment results to stakeholders, beneficiaries, and the public so that environmental consequences of decisions are understood. The Biological Condition (BCG) model provides a structure to evaluate the condition of a coral reef in increments of change along a gradient of human disturbance. Communication of incremental change, regardless of direction, is important for decision makers and the public to better understand what is gained or lost depending on what actions are taken. We developed a narrative (qualitative) Biological Condition Gradient (BCG) from the consensus of a diverse expert panel to provide a framework for coral reefs in US Caribbean Territories. The model uses narrative descriptions of biological attributes for benthic organisms to evaluate reefs relative to undisturbed or minimally disturbed conditions. Using expert elicitation, narrative decision rules were proposed and deliberated to discriminate among six levels of change along a gradient of increasing anthropogenic stress. Narrative rules for each of the BCG levels are presented to facilitate the evaluation of benthic communities in coral reefs and provide specific narrative features to detect changes in coral reef condition and biological integrity. The BCG model can be used in the absence of numeric, or quantitative metrics, to evaluate actions that may encroach on coral reef ecosystems, manage endangered species habitat, and develop and implement management plans for marine protected areas, watersheds, and coastal zones. The narrative BCG model is a defensible model and communication tool that translates scientific results so the nontechnical person can understand and support both regulatory and non-regulatory water quality and natural resource programs.

Puerto Rico, U.S. Virgin Islands↗

USGS2020

Movement-assisted localization from acoustic telemetry data

Acoustic telemetry technologies are being increasingly deployed to study a variety of aquatic taxa including fishes, reptiles, and marine mammals. Large cooperative telemetry networks produce vast quantities of data useful in the study of movement, resource selection and species distribution. Efficient use of acoustic telemetry data requires estimation of acoustic source locations from detections at receivers (i.e., “localization”). Multiple processes provide information for localization estimation including detection/non-detection data at receivers, information on signal rate, and an underlying movement model describing how individuals move and utilize space. Frequently, however, localization methods only integrate a subset of these processes and do not utilize the full spatial encounter history information available from receiver arrays.

Movement Ecology↗

USGS2025

Assessing the effect of coral reef restoration location on coastal flood hazard along the San Juan Coastline, Puerto Rico

Coastal resilience has become a pressing global issue due to the growing vulnerability of coastlines to the effects of climate change. Nature-based solutions have emerged as a promising approach to coastal protection to not only enhance coastal resilience, but also restore critical ecosystems. Coral reef restoration has the potential to provide ecosystem services benefits; however, there are still key uncertainties in linking restoration design to reductions in coastal flood hazard under current and future climate conditions. In this study, we applied one-dimensional and two-dimensional numerical coastal engineering models, calibrated and validated using field data, to evaluate the effectiveness of coral restoration scenarios on coastal waves, water levels, and flooding along the coast of San Juan, Puerto Rico, U.S.A. Model results indicate a small reduction in maximum water levels under the proposed restoration scenarios. This underscores the importance of these endeavors, not only for ecological preservation but also for preventing further reef deterioration. Such preservation is essential for mitigating the increased coastal risks anticipated in the future. Results from this study provide information to guide policymakers and coastal managers in making informed decisions on viable restoration project design options. By systematically evaluating how restoration location impacts coastal flood hazards, communities can develop and implement proactive strategies to mitigate flood-related risk. In addition, by restoring coral reefs, communities can contribute to environmental preservation while ensuring sustainable development and protection of coastal environments.

Puerto Rico, San Juan coastline↗

USGS2023

Incremental evolution of modeling a prognosis for polar bears in a rapidly changing Arctic

Updating predictions of the response of high-profile, at-risk species to climate change and anthropogenic stressors is vital for informing effective conservation action. Here, we review two prior generations of Bayesian network probability models predicting changes in global polar bear ( Ursus maritimus ) population status, and provide a contemporary update based on recent research findings and sea-ice projections by newer climate models. We compare predictions of polar bear population response from all 3 models among four circumpolar Arctic ecoregions, using sea ice projections based on three IPCC greenhouse gas emissions scenarios (SSP2.6, 4.5, 8.5). Consistent with the previous two model generations, polar bears will continue to experience increasing probability of declining or greatly declining populations throughout the 21st century, varying by emission scenario. Populations within the Polar Basin Divergent Ice Ecoregion have the highest predicted probability of declines, but predictions were slightly less dire relative to the previous model generation. Most of the influence, denoted by model sensitivity analysis, is from expected degradation and loss of sea ice and reduced access to marine prey. The lack of terrestrial prey adequate to substitute for loss of access to marine prey, as well as human-caused bear morality associated with hunting and defense of life and property encountered when polar bears are increasingly forced ashore also contributed to predicted declines. Although some tidewater glacial fjords and other localized onshore resources may provide local refugia, their benefit is transient. Our findings continue to inform priorities for inventory, monitoring, and research needs, and suggest that similar updates to models of other at-risk species can capitalize on the comparison framework we present here.

Ecological Indicators↗

USGS2002

Polar bear management in Alaska 1997-2000

Since the Twelfth Working Meeting of the IUCN/SSC Polar Bear Specialist Group in 1997, a number of changes in the management of polar bears have occurred in Alaska. On October 16, 2000, the governments of the United States and the Russian Federation signed the “Agreement on the Conservation and Management of the Alaska-Chukotka Polar Bear Population.” This agreement provides substantial benefits for the effective conservation of polar bears shared between the U.S. and Russia. It will require enactment of enabling legislation by the U.S. Congress and other steps by Russia before the agreement has the force of law. A copy of the agreement is included as Appendix 1 to this report. Also, during this period, regulations were developed to implement 1994 amendments to the Marine Mammal Protection Act (MMPA), which allow polar bear trophies taken in approved Canadian populations by U.S. citizens to be imported into the U.S. A summary of the regulatory actions and a table listing populations approved for importation and the number of polar bears imported into the U.S. since 1997 is included in this report. Regarding oil and gas activities in polar bear habitat, three sets of regulations were published authorizing the incidental, non-intentional, taking of small numbers of polar bears concurrent to oil and gas activities. Cooperation continued with the Alaska Nanuuq Commission, representing the polar bear hunting communities in Alaska, as well as with the North Slope Borough and the Inuvialuit Game Council in their agreement for the management of the Southern Beaufort Sea polar bear population. Harvest summaries and technical assistance in designing and assistance in conducting a National Park Service/Alaska Nanuuq Commission study to collect traditional ecological knowledge of polar bear habitat use in Chukotka were provided. In addition, a long-range plan was developed to address and minimize polar bear-human conflicts in North Slope communities. We continued to monitor the harvest of polar bears in Alaska and collect and analyze specimens for presence and level of organochlorine compounds and trace elements. A paper on genetic assessment of hunter reported sex of harvested bears was recently published (Schliebe et al. 1999). Population status and trend assessment efforts continued. An aerial survey of polar bears in the Eastern Chukchi Sea and western portions of the Southern Beaufort Sea was conducted from the U.S. Coast Guard icebreaker “Polar Star” in August 2000. The first year of a multi-year survey of barrier islands and coastlines during the open water and freeze-up phase was conducted in the central Southern Beaufort Sea during fall 2000.

Alaska↗

USGS2004

The microbial arsenic cycle in Mono Lake, California

Significant concentrations of dissolved inorganic arsenic can be found in the waters of a number of lakes located in the western USA and in other water bodies around the world. These lakes are often situated in arid, volcanic terrain. The highest concentrations of arsenic occur in hypersaline, closed basin soda lakes and their remnant brines. Although arsenic is a well-known toxicant to eukaryotes and prokaryotes alike, some prokaryotes have evolved biochemical mechanisms to exploit arsenic oxyanions (i.e., arsenate and arsenite); they can use them either as an electron acceptor for anaerobic respiration (arsenate), or as an electron donor (arsenite) to support chemoautotrophic fixation of CO 2 into cell carbon. Unlike in freshwater or marine ecosystems, these processes may assume quantitative significance with respect to the carbon cycle in arsenic-rich soda lakes. For the past several years our research has focused on the occurrence and biogeochemical manifestations of these processes in Mono Lake, a particularly arsenic-rich environment. Herein we review some of our findings concerning the biogeochemical arsenic cycle in this lake, with the hope that it may broaden the understanding of the influence of microorganisms upon the speciation of arsenic in more common, less “extreme” environments, such as drinking water aquifers.

California↗

USGS2021

Energetic and health effects of protein overconsumption constrain dietary adaptation in an apex predator

Studies of predator feeding ecology commonly focus on energy intake. However, captive predators have been documented to selectively feed to optimize macronutrient intake. As many apex predators experience environmental changes that affect prey availability, limitations on selective feeding can affect energetics and health. We estimated the protein:fat ratio of diets consumed by wild polar bears using a novel isotope-based approach, measured protein:fat ratios selected by zoo polar bears offered dietary choice and examined potential energetic and health consequences of overconsuming protein. Dietary protein levels selected by wild and zoo polar bears were low and similar to selection observed in omnivorous brown bears, which reduced energy intake requirements by 70% compared with lean meat diets. Higher-protein diets fed to zoo polar bears during normal care were concurrent with high rates of mortality from kidney disease and liver cancer. Our results suggest that polar bears have low protein requirements and that limitations on selective consumption of marine mammal blubber consequent to climate change could meaningfully increase their energetic costs. Although bear protein requirements appear lower than those of other carnivores, the energetic and health consequences of protein overconsumption identified in this study have the potential to affect a wide range of taxa.

Scientific Reports↗