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USGS2023

Application of the Stream Salmonid Simulator (S3) model to assess fall Chinook salmon (Oncorhynchus tshawytscha) production in the American River, California

Executive Summary Anadromous fish returning to the lower American River are restricted to 36 kilometers of free-flowing river between Nimbus Dam and American River’s confluence with the Sacramento River, California. Salmon in the American River provide an important freshwater recreational fishery. However, annual salmon production in the American River in recent years has been low relative to the mid-1990s (Surface Water Resources, Inc., 2001). To investigate the low production of fall-run Chinook salmon ( Oncorhynchus tshawytscha ), the Bureau of Reclamation requested that the U.S. Geological Survey apply the Stream Salmonid Simulator (S3) model to the population of fall-run Chinook salmon on the American River. The American River was chosen among seven candidate Sacramento Basin rivers for S3 application. The American River was selected because of its management and public interest, recently low anadromous fish production, and rich time series of key demographic data needed for S3 application. Data that were not available, however, were empirical estimates on juvenile salmon habitat suitability in the American River. Therefore, a large component of applying S3 to the American River was devoted to the estimation of juvenile salmon habitat suitability and capacity. This entailed snorkeling the lower American River for 3 weeks in March 2021 during the early out-migration period for juvenile Chinook salmon. These efforts were fruitful and showed that the typically small fish (<55 millimeters) in the American River preferred much shallower depths than predicted by habitat suitability criteria derived from the literature for this population. Having empirical estimates on juvenile salmon in the American River provided a solid foundation from which to simulate the population using the S3 model. The S3 model is a spatially explicit population model that runs on a daily time step to simulate redd superimposition, egg maturation, fry emergence and the subsequent growth, survival, and emigration of juvenile Chinook salmon from the river. The key features of this model relevant to this report include (1) a temperature-dependent bioenergetics model driving daily growth rates; (2) density-dependent dynamics that are influenced by the effect of flow on suitable habitat area; and (3) within-year habitat, river flow, and water temperature effects specific to spawning, egg incubation, and fry, parr, and smolt life stages. We used estimates of spawning escapement and geo-referenced redd locations to quantify the spatial and temporal distribution of female spawners for brood years 2014–19. These estimates of female spawners initiate the simulation of each year’s juvenile salmon emergence and emigration over a spatial domain extending from Nimbus Dam to the river’s confluence with the Sacramento River. Using weekly estimates of juvenile salmon abundance and size (fork length) that passed the Watt Avenue fish trap (river kilometer 14.7), we calibrated the S3 model by estimating three key demographic parameters for each year, y : (1) S y , the average daily survival probability, (2) M 0y , the intercept for density-dependence in movement, representing the average daily probability of remaining in a habitat at zero abundance, and (3) C y , the average daily proportion of maximum consumption. These parameters were obtained by minimizing the Mallow’s distance (Lupu and others, 2017) between distributions of weekly abundances and sizes of fish at the traps and weekly simulated abundances and sizes (by S3). Investigation of model fit showed excellent agreement between simulated annual abundances and the abundance of fish passing the fish trap. However, when we compared weekly abundances at the fish trap, S3 under-predicted peaks and over-predicted troughs in the time series of weekly abundances at the fish trap. Thus, some unknown within-year effects have yet to be identified and incorporated in the S3 model. Identifying these important effects and incorporating them in the S3 model would help explain the lack of fit between estimated and simulated weekly abundances. We estimated parameters for 6 years that included a wide range of female spawner abundances (3,057–10,753) and water year types (Critical–Wet). We contrast our estimated parameters to the corresponding number of female spawners and the water year type for the Sacramento Valley. By happenstance, years having higher annual spawner abundances concurred with Critical to Dry water year types. Estimates of survival trended lower with higher spawner abundances and Critical to Dry conditions. In contrast, the extremely wet water year of 2017 had the lowest M 0y , suggesting less density-dependence in fish movement, and the lowest C y , suggesting lower average consumption in this year. When this high-flow year was excluded, a trend towards higher probabilities of fish remaining in a habitat at low abundance and lower proportions of maximum consumption was apparent from Critical to Wet conditions, but only 5 years of data were included. Except for 2017, daily proportions of maximum consumption were relatively high ( C y > 0.83), suggesting that fish were feeding at reasonably high proportions relative to the expected maximum consumption as defined by the “Wisconsin” bioenergetics model (Stewart and Ibarra, 1991). Survival estimates from fry emergence to outmigration at the Sacramento River confluence were generally low when integrated over time. The highest daily survival probability was S y = 0.93 in 2019, or 50 percent total mortality after 10 days. In contrast, our lowest daily survival probability was S y = 0.74 in 2015, or 95 percent total mortality after 10 days. Consequently, even our highest estimated daily survival probability might be considered low. This is especially true given that S y was estimated over a relatively short distance (<14.7 kilometers) from emergence to the Watt Avenue fish trap. Several factors, including our assumed and relatively high daily egg survival rate of 0.9975, could influence juvenile survival estimates. For example, an egg survival rate of 0.9975 results in 3-percent total mortality after 10 days. Egg mortality estimates used in S3 calibration were approximated from egg survivorship studies in the Yakima River, Washington (Johnson and others, 2012), and remains one of the greater uncertainties in S3 when estimating survival across life stages. By including bona fide estimates of egg survival in S3 simulations, the validity of the S3’s current daily egg survival rate could be assessed specifically for the American River. Tagging studies also could provide S3 with direct estimates of juvenile survival and movement; survival during egg incubation then could be estimated indirectly via model fitting.

California↗

USGS2016

Assessing the potential for rainbow trout reproduction in tributaries of the Mountain Fork River below Broken Bow Dam, southeastern Oklahoma

Stocked trout (Salmonidae) in reservoir tailwater systems in the Southern United States have been shown to use tributary streams for spawning and rearing. The lower Mountain Fork of the Little River below Broken Bow Dam is one of two year-round tailwater trout fisheries in Oklahoma, and the only one with evidence of reproduction by stocked rainbow trout (Oncorhynchus mykiss). Whether stocked trout use tributaries in this system for spawning is unknown. Furthermore, an inventory of the resident fish communities in these tributaries is lacking. To address these gaps, we surveyed 10 tributaries, from intermittent through third order, for fishes during presumed spawning periods of rainbow trout; we used backpack electrofishing in February and April 2015 and 2016 to determine the composition of the fish assemblages and whether trout were present. Stocked adult trout were found in three tributaries in 2015; wild juvenile rainbow trout were found in Bee Branch in 2015 and in an intermittent tributary of Spillway Creek, just above the “Cold Hole,” in 2016. Fish assemblages were dominated by highland stonerollers (Campostoma spadiceum) in larger, wider systems and by orangebelly darters (Etheostoma radiosum) in smaller, narrower streams. These data fill an information gap in our understanding of small streams in the Ouachita Mountains, and they demonstrate that some streams are suitable for rainbow trout reproduction.

Oklahoma↗

USGS2014

Structure and vulnerability of Pacific Northwest tidal wetlands – A summary of wetland climate change research by the Western Ecology Division, U.S. EPA

Climate change poses a serious threat to the tidal wetlands of the Pacific Northwest (PNW) region of the U.S. In response to this threat, scientists at the Western Ecology Division of the U.S. EPA at and the Western Fisheries Research Center of the U.S. Geological Survey, along with other partners, initiated a series of studies on the structure and vulnerability of tidal wetlands to climate change. One research thrust was to evaluate community structure of PNW marshes, experimentally assess the vulnerability of marsh plants to inundation and salinity stress (as would happen with sea level rise), and evaluate the utility of the National Wetland Inventory (NWI) classification system. Another research thrust was to develop tools that provide insights into possible impacts of climate change. This effort included enhancing the Sea Level Affecting Marshes Model (SLAMM) to predict the effects of sea level rise on submerged aquatic vegetation (Zostera marina) distributions, evaluating changes in river flow into coastal estuaries in response to precipitation changes, and synthesizing Pacific Coast estuary, watershed, and climate data in a downloadable tool. Because the research resulting from these efforts was published in multiple venues, we summarized them in this document. We anticipate that future research efforts by the U.S. EPA will continue with a focus on climate change impacts on a regional scale.

California, Oregon, Washington↗

USGS2011

Sea-Floor geology and character of Eastern Rhode Island Sound West of Gay Head, Massachusetts

Gridded multibeam bathymetry covers approximately 102 square kilometers of sea floor in eastern Rhode Island Sound west of Gay Head, Massachusetts. Although originally collected for charting purposes during National Oceanic and Atmospheric Administration hydrographic survey H11922, these acoustic data and the sea-floor stations subsequently occupied to verify them (1) show the composition and terrain of the seabed, (2) provide information on sediment transport and benthic habitat, and (3) are part of an expanding series of studies that provide a fundamental framework for research and management activities (for example, windfarms and fisheries) along the Massachusetts inner continental shelf. Most of the sea floor in the study area has an undulating to faintly rippled appearance and is composed of bioturbated muddy sand, reflecting processes associated with sediment sorting and reworking. Shallower areas are composed of rippled sand and, where small fields of megaripples are present, indicate sedimentary environments characterized by processes associated with coarse bedload transport. Boulders and gravel were found on the floors of scour depressions and on top of an isolated bathymetric high where erosion has removed the Holocene marine sediments and exposed the underlying relict lag deposits of Pleistocene drift. The numerous scour depressions, which formed during storm-driven events, result in the juxtaposition of sea-floor areas with contrasting sedimentary environments and distinct gravel, sand, and muddy sand textures. This textural heterogeneity in turn creates a complex patchwork of habitats. Our observations of local variations in community structure suggest that this small-scale textural heterogeneity adds dramatically to the sound-wide benthic biological diversity.

Eastern Rhode Island Sound;West Of Gay Head;Massac↗

USGS2017

Octocoral diseases in a changing ocean

Octocorals (Cnidaria, Octocorallia) constitute a geographically widely distributed and common group of marine invertebrates commonly referred to as “soft-corals,” “sea fans,” “horny corals,” “sea feathers,” and “sea plumes.” They are found from shallow coastal habitats to mesophotic and abyssal depths. Octocorals are important members of most Atlantic-Caribbean, Indo-Pacific, and Mediterranean coastal and mesophotic reef communities; however, information about their susceptibility to diseases, predation, and competition, and their relationship with changing environmental conditions is limited. At least 19 diseases have been observed in at least 42 common octocoral species throughout their range. Twelve of these have been reported in the wider Caribbean (CA), one in Brazil (BR), two in the Mediterranean (ME), one in the Eastern Pacific (EP), and three in the western Pacific (WP). Pathogenic and/or environmental causes have been identified for eight diseases, including viruses, terrestrial fungi, protozoans, bacteria and cyanobacteria, filamentous algae, parasitic copepods, and high temperature. Only a few of the suspected pathogens have been tested with Koch’s postulates. At least eight disease outbreaks have led to extensive octocoral mortalities in the CA, ME, BR, and EP with detrimental ecological consequences. The fungal disease Aspergillosis has produced the highest mortalities in the CA and the EP. Other fungi, protozoans, and the bacterium Vibrio coralliilyticus were identified as potential causes of the death of millions of colonies in two Mediterranean disease outbreaks. Bacterial and fungal agents seemed to be responsible for the mass mortalities in Brazil and the WP. Most outbreaks in all regions were linked to high thermal anomalies associated with climate change, which seems to be the major driver. Other biological stressors such as predation and/or competition produce injuries that may contribute to the spread of infections and mortality. Overfishing of common predators could lead to population explosions of octocoral-feeding species that produced mass mortalities in some Caribbean localities. Our lack of knowledge of causes and pathogenesis of octocoral diseases parallels that of hard corals. New diseases are being described almost every year concomitant with increasing seawater temperatures. The ecological and economic consequences could be significant, with drastic changes in the seascape of shallow coral reefs and other coastal marine habitats and reduction of their ecological services. Given our limited knowledge, our best options for recovery of octocorals and coral reefs in general include sound management of coastal fisheries, development and tourism; reduction of land- and sea-based pollution; and abating effects of climate change.

Book chapter↗

USGS2012

The Mekong Fish Network: expanding the capacity of the people and institutions of the Mekong River Basin to share information and conduct standardized fisheries monitoring

The Mekong River is one of the most biologically diverse rivers in the world, and it supports the most productive freshwater fisheries in the world. Millions of people in the Lower Mekong River Basin (LMB) countries of the Union of Myanmar (Burma), Lao People’s Democratic Republic, the Kingdom of Thailand, the Kingdom of Cambodia, and the Socialist Republic of Vietnam rely on the fisheries of the basin to provide a source of protein. The Mekong Fish Network Workshop was convened in Phnom Penh, Cambodia, in February 2012 to discuss the potential for coordinating fisheries monitoring among nations and the utility of establishing standard methods for short- and long-term monitoring and data sharing throughout the LMB. The concept for this network developed out of a frequently cited need for fisheries researchers in the LMB to share their knowledge with other scientists and decisionmakers. A fish monitoring network could be a valuable forum for researchers to exchange ideas, store data, or access general information regarding fisheries studies in the LMB region. At the workshop, representatives from governments, nongovernmental organizations, and universities, as well as participating foreign technical experts, cited a great need for more international cooperation and technical support among them. Given the limited staff and resources of many institutions in the LMB, the success of the proposed network would depend on whether it could offer tools that would provide benefits to network participants. A potential tool discussed at the workshop was a user-friendly, Web-accessible portal and database that could help streamline data entry and storage at the institutional level, as well as facilitate communication and data sharing among institutions. The workshop provided a consensus to establish pilot standardized data collection and database efforts that will be further reviewed by the workshop participants. Overall, workshop participants agreed that this is the type of support that is greatly needed to answer their most pressing questions and to enable local researchers and resource managers to monitor and sustain the valuable and diverse aquatic life of the Mekong River.

Mekong River↗

USGS2007

Bacteriological water quality in and around Lake Pontchartrain following Hurricanes Katrina and Rita

Following the Louisiana landfalls of Katrina on August 29 and Rita on September 24, 2005, the local population and the American public were concerned about the effects the hurricanes might have on water quality in Lake Pontchartrain. The lake is a major recreational resource for the region and an important fishery. Contamination carried by the storm surge—along with runoff and water pumped from flooded areas of New Orleans—was considered a serious threat to the water body. The USGS, in collaboration with the LDEQ, monitored the sanitary quality of water at 22 sites in and around Lake Pontchartrain, La., for 3 consecutive weeks from September 13 to 29, 2005 (fig. 1). A subsequent multipleagency survey of 30 sites within Lake Pontchartrain was undertaken by the U.S. Environmental Protection Agency (EPA), the USGS, and the National Oceanic and Atmospheric Administration during the week of October 11–14, 2005, to evaluate the effects of the hurricanes and overall levels of fecal contamination on the water quality of the lake (see Heitmuller and Perez, this volume). In addition, the EPA monitored fecal-indicator concentrations at a variety of sites in New Orleans, surrounding areas, and the Mississippi River between September 3 and October 22, 2005 (U.S. Environmental Protection Agency, 2006). This article describes fecal-indicator bacteria concentration results collected by USGS in the context of other existing data.

Louisiana↗

USGS2018

Experimental whole-lake dissolved organic carbon increase alters fish diet and density but not growth or productivity

Negative relationships between dissolved organic carbon (DOC) concentration and fish productivity have been reported from correlative studies across lakes, but to date there have not been experimental tests of these relationships. We increased the DOC concentration in a lake by 3.4 mg L-1, using a before-after control-impact (BACI) design, to quantify the effects on the productivity and population structure of Largemouth Bass (Micropterus salmoides). Greater DOC reduced the volume of the epilimnion, the preferred habitat of Largemouth Bass, resulting in increased bass density. The likelihood that adult bass had empty diets decreased despite this increase in bass density; diet composition also changed. There was no apparent change in bass growth or condition. Overall, there was no net change in Largemouth Bass productivity. However, changes in YOY and juvenile recruitment and feeding success suggest the possibility that future effects could occur. Our results are the first to examine the effects of an increase in DOC on fish productivity through a five-year temporal lens, which demonstrates that the relationship between DOC and fish productivity is multi-dimensional and complex.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2011

Home range and space use patterns of flathead catfish during the summer-fall period in two Missouri streams

Flathead catfish Pylodictis olivaris were radio-tracked in the Grand River and Cuivre River, Missouri, from late July until they moved to overwintering habitats in late October. Fish moved within a definable area, and although occasional long-distance movements occurred, the fish typically returned to the previously occupied area. Seasonal home range was calculated with the use of kernel density estimation, which can be interpreted as a probabilistic utilization distribution that documents the internal structure of the estimate by delineating portions of the range that was used a specified percentage of the time. A traditional linear range also was reported. Most flathead catfish (89%) had one 50% kernel-estimated core area, whereas 11% of the fish split their time between two core areas. Core areas were typically in the middle of the 90% kernel-estimated home range (58%), although several had core areas in upstream (26%) and downstream (16%) portions of the home range. Home-range size did not differ based on river, sex, or size and was highly variable among individuals. The median 95% kernel estimate was 1,085 m (range, 70– 69,090 m) for all fish. The median 50% kernel-estimated core area was 135 m (10–2,260 m). The median linear range was 3,510 m (150–50,400 m). Fish pairs with core areas in the same and neighboring pools had static joint space use values of up to 49% (area of intersection index), indicating substantial overlap and use of the same area. However, all fish pairs had low dynamic joint space use values (<0.07; coefficient of association), indicating that fish pairs were temporally segregated, rarely occurring in the same location at the same time.

Missouri↗

USGS2023

Expanding our view of the cold-water coral niche and accounting of the ecosystem services of the reef habitat

Coral reefs are iconic ecosystems that support diverse, productive communities in both shallow and deep waters. However, our incomplete knowledge of cold-water coral (CWC) niche space limits our understanding of their distribution and precludes a complete accounting of the ecosystem services they provide. Here, we present the results of recent surveys of the CWC mound province on the Blake Plateau off the U.S. east coast, an area of intense human activity including fisheries and naval operations, and potentially energy and mineral extraction. At one site, CWC mounds are arranged in lines that total over 150 km in length, making this one of the largest reef complexes discovered in the deep ocean. This site experiences rapid and extreme shifts in temperature between 4.3 and 10.7 °C, and currents approaching 1 m s −1 . Carbon is transported to depth by mesopelagic micronekton and nutrient cycling on the reef results in some of the highest nitrate concentrations recorded in the region. Predictive models reveal expanded areas of highly suitable habitat that currently remain unexplored. Multidisciplinary exploration of this new site has expanded understanding of the cold-water coral niche, improved our accounting of the ecosystem services of the reef habitat, and emphasizes the importance of properly managing these systems.

Scientific Reports↗

USGS2008

Vegetation Types in Coastal Louisiana in 2007

During the summer and fall of 2007, the U.S. Geological Survey, the Louisiana State University Agricultural Center, and the Louisiana Department of Wildlife and Fisheries Fur and Refuge Division jointly completed an aerial survey to collect data on 2007 vegetation types in coastal Louisiana. The current map presents the data collected in this effort. The 2007 aerial survey was conducted by using techniques developed over the last thirty years while conducting similar vegetation surveys. Transects flown were oriented in a north-south direction and spaced 1.87 mi (3 km) apart and covered coastal marshes from the Texas State line to the Mississippi State line and from the northern extent of fresh marshes to the southern end of saline (saltwater) marshes on the beaches of the Gulf of Mexico or of coastal bays. Navigation along these transects and to each sampling site was accomplished by using Global Positioning System (GPS) technology and geographic information system (GIS) software. As the surveyors reached each sampling station, observed areas of marsh were assigned as fresh, intermediate, brackish, or saline (saltwater) types, and dominant plant species were listed and ranked according to abundance. Delineations of marsh boundaries usually followed natural levees, bayous, or other features that impede or restrict water flow.

Louisiana↗

USGS1987

Results of a workshop concerning assessment of the functions of bottomland hardwoods

The U.S. Environmental Protection Agency (EPA) is authorized under Section 404 of the Clean Water Act (33 U.S.C. 1344) to participate in the regulation of the discharge of dredged or fill material into waters of the United States. This regulatory authority is exercised in partnership with the U.S. Army Corps of Engineers, which has responsibility for permit issuance, and in consultation with the U.S. Fish and Wildlife Service and the National Marine Fisheries Service. Through amendments to the original statute, a series of legal actions and court decisions, and the development of operating guidance among the responsible agencies, Section 404 has evolved into the primary mechanism afforded Federal authorities for the protection of wetlands. EPA recognizes the importance of wetlands in achieving the goals of the Clean Water Act, which are to protect and maintain the chemical, physical, and biological integrity of the Nation’s waters. EPA Administrator Lee Thomas has identified wetlands protection as among the highest of Agency priorities. EPA recognizes that bottomland hardwood (BLH) wetlands have vital and unique attributes that, if lost, would severely impact the physical, chemical, and biological integrity of the Nation's waters. As part of a broad program to better protect the Nation's wetlands, EPA has therefore identified bottomland hardwood wetlands as a priority resource requiring special attention on a national basis. Recognizing the importance of implementing an effective, nationally consistent, and scientifically defensible regulatory program, EPA, in October 1984, issued Interim Operating Guidance to its field personnel for implementing the Section 404 regulatory program in bottomland hardwood wetlands. With the goal of improving and finalizing that guidance, EPA is sponsoring a series of workshops designed to answer key questions concerning BLH wetlands, based on the best scientific and technical information currently available. The first two workshops were directed toward summarizing existing scientific and technical knowledge concerning the functions of BLH ecosystems, the characteristics that are important to each function, and the impact of various development activities on those characteristics. The first workshop, which was held in St. Francisville, Louisiana, in December, 1984, examined a wetland zonation concept as a framework for gaining a greater understanding of BLH structure and function. The workshop set out to determine whether characterization of BLH resources as a series of relatively distinct zones, defined by concomitant variation in hydrologic regime, soils, and vegetation, might provide the basis for a useful and scientifically sound regulatory framework. For examp1e, if certain zones are of particular importance to one or more wetland functions that the Clean Water Act was intended to protect, then the zonation concept might be useful from the perspective of how various activities should be regulated. Discussions during the first workshop, however, indicated that the zonation concept provides, at best, only an incomplete picture of the structure and function of BLH ecosystems. In many cases, BLH functions are not limited to or closely correlated with particular zones and, furthermore, many factors other than zone are important determinants of BLH functions. With these responses in mind, the second workshop, held at Lake Lanier, Georgia, in July, 1985, was designed to elicit information on two questions. First, if zones are not an adequate framework for understanding the functions of BLH systems, what characteristics (predictors) can be used to assess the extent to which a particular site performs these functions? And second, what are the impacts of various development activities that often occur in BLH ecosystems on those characteristics and thus on the functions themselves? At the second workshop, individual workgroups dealing with particular subject areas (e.g., hydrology, water quality, fisheries, wildlife, ecosystem processes, and cultural/recreational/economic resources) were able to identify site characteristics that are important determinants of the performance of various functions. For example, the Hydrology Workgroup identified flood storage as one of three major hydrologic functions that BLH ecosystems perform. The workgroup then identified the most important characteristic (e.g., surface area of the site, soil saturation, and others) that determine flood storage and the likely impact of several common activities (e.g., conversion to soybean production and levee construction) on these characteristics. Some of the workgroups also provided estimates of the aggregate impact of activities, acting through all of the characteristics, on certain functions. The workgroups also identified key characteristics that could be used to identify high-value wetlands for various functions. In addition, the workgroups pointed out a number of topics needing further examination and discussion. First, all of the workgroups identified the need to develop the technical basis and information sources to address the problem of cumulative impacts in the regulatory process. Second, most of the workgroups noted the important of contextual variables in assessing the function of a particular site. For example, the location of a BLH site in relationship to other tracts of habitat is an important variable for many wildlife species. Similarly, the extent to which a site retains or transforms contaminants is depended not only on the characteristics of the site, but also on its position in a watershed relative to contaminant inputs. And finally, several of the workgroups pointed out that assessing the impact of an activity on a function is not as simple as "adding up" the impact on individual characteristics, but may depend instead on complex interactions among characteristics. Addressing these questions, as summarized in the objectives and discussions that follow, was the focus of the third workshop, the results of which are described in this report.

Report↗

USGS2024

Determination of antimycin–a in a liquid formulation by high performance liquid chromatography–mass spectrometry

Pesticide formulations containing the active ingredient antimycin–a (ANT–A) have been used by fisheries and aquaculture managers for several decades to remove nuisance fish species. Analytical methods for measuring ANT–A during pesticide treatments have been done using high performance liquid chromatography (HPLC) paired with multiple detection methods (for example, electrochemical, ultraviolet, fluorescence, mass spectrometry). However, instruments and analytical chemistry methods can advance over time because of the need to develop timely, reliable, cost effective, and reproducible methods. Subsequently, ANT–A analytical chemistry methods and sample processing techniques also have improved over the past several decades. In the present study, we describe a liquid chromatography–mass spectrometry method and its verification across three analysts. Each analyst group created a single calibration curve and verified ANT–A in a liquid formulation using the averaged total response of all major ANT–A homologs (A1, A3, A3, A4). The advantage of this technique is that it creates a more resilient ANT–A quantification method amendable to batch-batch differences in major homologs. The method demonstrated how ANT–A can be effectively measured with high accuracy (98–99 percent), precision (2.7–16.2 percent), and specificity within a pesticide liquid formulation using a method applicable for Federal registration requirements.

Open-File Report↗

USGS2012

Effects of urban development on stream ecosystems in nine metropolitan study areas across the United States

Urban development is an important agent of environmental change in the United States. The urban footprint on the American landscape has expanded during a century and a half of almost continuous development. Eighty percent of Americans now live in metropolitan areas, and the advantages and challenges of living in these developed areas—convenience, congestion, employment, pollution—are part of the day-to-day realities of most Americans. Nowhere are the environmental changes associated with urban development more evident than in urban streams. Contaminants, habitat destruction, and increasing streamflow flashiness resulting from urban development have been associated with the disruption of biological communities, particularly the loss of sensitive aquatic species. Every stream is connected downstream to larger water bodies, including rivers, reservoirs, and ultimately coastal waters. Inputs of chemical contaminants or sediments at any point along the stream can cause degradation downstream with adverse effects on biological communities and on economically valuable resources, such as fisheries and tourism. In response to general concerns about the degradation of urban streams, the U.S. Geological Survey (USGS) conducted a national-scale, scientific investigation of the effects of urban development on stream ecosystems. Nine metropolitan study areas of the United States were selected—Portland, Oregon; Salt Lake City, Utah; Birmingham, Alabama; Atlanta, Georgia; Raleigh, North Carolina; Boston, Massachusetts; Denver, Colorado; Dallas, Texas; and Milwaukee, Wisconsin. The studies were conducted in Salt Lake City, Birmingham, and Boston in 1999–2000; in Atlanta, Raleigh, and Denver in 2002–2003; and in Portland, Dallas, and Milwaukee in 2003–2004. The comprehensive investigation of all nine studies focused on three broad questions of interest to decision makers: What are the primary effects of urban development on stream ecosystems? How do the effects of urban development on stream ecosystems vary regionally across the country? Which urban-related stressors are most closely linked to biological community degradation, and how can multiple stressors be managed to protect stream health as a watershed becomes increasingly urbanized?

Alabama;Colorado;Georgia;Massachusetts;North Carol↗

USGS2002

Archive of chirp subbottom data collected during USGS cruise ORGN00005, northeastern Gulf of Mexico, 15 February-2 March 2000

In 1999, the Gulf of Mexico Fishery Management Council recommended that NOAA 's National Marine Fisheries Service establish two approximately 11-square-mile areas on the shelf edge in the northeastern Gulf of Mexico as no-fishing areas. One of the areas, the Madison-Swanson Marine Protected Area ( MPA ) lies about 100 km south of Panama City, Florida. The second area, Steamboat Lumps MPA lies about 150 km SSE of Madison-Swanson. The high-resolution seismic-reflection data contained herein were collected as part of a larger study of the effectiveness of no-fishing reserves in protecting grouper spawning aggregations. These subbottom profiles will be used in conjunction with other data to map the seafloor geology and the character and extent of benthic habitats within and surrounding the two MPAs. They show the shape and acoustic impedence of the seafloor and the thicknesses and orientations of shallow subsurface horizons. These data may be helpful in the following applications: choosing biological monitoring sites management decisions in the MPA s choosing sites for future MPA s studies of paleo-sealevel studies of the inter-relationships between seafloor geology and benthic ecology studies of sedimentary geology and geologic framework of the northeastern Gulf of Mexico

Open-File Report↗

USGS2005

The sterile-male-release technique in Great Lakes sea lamprey management

The parasitic sea lamprey (Petromyzon marinus) has been a serious pest since its introduction into the Great Lakes, where it contributed to severe imbalances in the fish communities by selectively removing large predators (Smith 1968; Christie 1974; Schneider et al.1996). Since the 1950s, restoration and maintenance of predator-prey balance has depended on the Great Lakes Fishery Commission (GLFC) sea lamprey management program. Initially, management relied primarily on stream treatments with a selective lampricide to kill larvae, on barriers to migration, and on trapping to remove potential spawners (Smith and Tibbles 1980). By the late 1970s, however, it was clear that the future of sea lamprey management lay in development of a larger array of control strategies, including more alternatives to lampricide applications (Sawyer 1980). Since then the only new alternative to chemical control to reach operational status is the release of sterilized male sea lampreys. Research on the concept began at the USGS, Hammond Bay Biological Station in Millersburg, MI (HBBS) during the 1970s (Hanson and Manion 1980). Development and evaluation continued through the 1980s, leading to the release of sterilized males in Great Lakes tributaries since 1991 (Twohey et al. 2003a). The objectives of this paper are 1) to review the implementation and evaluations of sterile-male-release technique (SMRT) as it is being applied against sea lampreys in the Great Lakes, 2) to review our current understanding of its efficacy, and 3) to identify additional research areas and topics that would increase either the efficacy of SMRT or expand its geographic potential for application.

Report↗

USGS2024

Comparative toxicity of emulsifiable concentrate and suspension concentrate formulations of 2′,5-dichloro-4′-nitrosalicylanilide ethanolamine salt

The 2-aminoethanol salt of niclosamide (2′,5-dichloro-4′-nitrosalicylanilide) is a pesticide known as Bayluscide that is used in conjunction with TFM (4-nitro-3-[trifluoromethyl]phenol), also known as 3-trifluoromethyl-4-nitrophenol) to treat tributaries to the Great Lakes infested with invasive parasitic Petromyzon marinus (sea lamprey). Adding 0.5 to 2 percent Bayluscide with TFM can substantially reduce the amount of TFM required to achieve effective control. Currently, an emulsifiable concentrate (EC) formulation of Bayluscide is used in combination with TFM during some stream treatments completed by the Great Lakes Fishery Commission’s binational sea lamprey control program. The Bayluscide EC formulation is highly effective; however, it degrades application tubing, adheres to application equipment, and raises concerns for worker safety because of the solvent in the formulation, N-methyl-2-pyrrolidone. We collaborated with a pesticide formulation company to develop a Bayluscide 20-percent suspension concentrate (SC) formulation as a potential replacement for the Bayluscide 20-percent EC formulation. The 20-percent SC formulation was specifically developed using inert ingredients approved for use by the U.S. Environmental Protection Agency and the Health Canada Pest Management Regulatory Agency. Although approved for use, the inclusion of a small quantity of an antimicrobial in the formulation warranted evaluating the toxicological profile to sea lamprey and select nontarget fish species. We evaluated and compared the toxicity of the 20-percent SC formulation to the 20-percent EC formulation using continuous-flow diluter systems and larval sea lamprey and select cold-, cool-, and warm-water fish as test animals. Our results demonstrate comparable toxicological profiles between the two formulations with the 20-percent SC formulation being slightly less toxic to the nontarget species evaluated.

Open-File Report↗

USGS1974

A review of the literature on the use of TFM-Bayluscide in fisheries

Since 1956 the Great Lakes Fishery Commission has been responsible for formulating and implementing a program to eradicate or control the sea lamprey in the Great Lakes. The U.S. Fish and Wildlife Service and the Sea Lamprey Control Centre of the Canadian Department of the Environment act as agents for the Commission in sea lamprey control. In the search for a selective lampricide that would control lampreys without destroying fish and other aquatic organisms, about 6,000 chemicals were tested at the Hammond Bay Biological Station of the U.S. Fish and Wildlife Service, largely during the mid 1950's. One compound, TFM, which is selectively toxic to sea lampreys was developed for field use. In 1963 Bayluscide was discovered to be extremely toxic to sea lampreys. Because Bayluscide is also very toxic to fish, being virtually nonselective between lampreys and rainbow trout, only 3% by weight can be added to TFM without losing the selective toxicity of TFM. Addition of small amounts of Bayluscide to TFM, however, effects substantial savings by greatly reducing the amount of TFM needed for effective treatment of lamprey populations. Since 1963 mixtures of TFM and Bayluscide have been used as a lampricide in tributaries of the Great Lakes by both the U.S. and Canadian governments.

Literature Review↗