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At least 829 records · Page 46Linked to original sources
USGS2025

Survival of captive-raised light-footed Ridgway’s rails is influenced by release date and time in wild

Captive breeding and translocation programs are an increasingly common conservation tool and management strategy used for some of the rarest and most endangered species in the world. These programs come at a high cost, and many translocation programs fail to monitor animals after release. Light-footed Ridgway’s rails ( Rallus obsoletus levipes ) are federally endangered marsh birds endemic to coastal wetlands of southern California and northern Mexico. Juvenile captive-raised light-footed Ridgway’s rails have been released into marshes within their U.S. range for >20 yr, but little effort has been devoted to post-release tracking of their movement and survival. We used satellite GPS transmitters to track survival of 46 juvenile captive-released and 42 juvenile wild-caught light-footed Ridgway’s rails from 2020–2022. Our results suggest that juvenile captive-released rails had lower initial daily survival probability (0.979) compared with that of juvenile wild-caught rails (0.994). Survival probability of captive-released rails increased with time in the wild, matching that of wild birds at about 100 d post-release. Survival of captive-released birds was most influenced by the date birds were released (releases in early summer had the highest survival). Our study emphasizes the importance of post-release monitoring as part of any captive breeding and translocation program and provides important insight into management strategies that may improve captive-released rail survival in the wild.

California↗
USGS2025

A compilation pipeline for wildlife tracking datasets collected from ground-based and satellite-based telemetry transmission devices

Wildlife conservation planning increasingly requires collaboration and integration of research from discrete studies spanning large geographic areas. Tracking datasets are essential for analyzing animal movements and species distributions in relation to environmental conditions and combining them can enable powerful analyses to further aid planning efforts. However, combining datasets necessitates addressing variation in study designs, tracking methodologies, location uncertainty, and data attributes. We outline a compilation pipeline to integrate ground-based and satellite-based telemetry tracking datasets, motivated from our work with greater sage-grouse ( Centrocercus urophasianus ), a highly imperiled species of western North America. Our objective was to create a database with a standardized set of attributes to facilitate filtering locations for spatial analyses. Our pipeline phases are: (1) dataset pre-processing, (2) formatting individual datasets to a common template, (3) dataset binding, (4) error checking, and (5) filtering. Our pipeline includes additional functionality to identify coordinates from recurrently visited locations (e.g., nest sites), which may be of special interest. The final compiled sage-grouse database included nearly 5 million locations collected from 53 datasets and over 19,000 birds tracked from 1980 to 2022, including over 11,000 nest locations. Our error checks flagged 3.9 % of locations as likely errors, predominantly collected from satellite-based telemetry transmissions. We demonstrate the ability of our pipeline to identify nest locations and flag erroneous locations by applying it to simulated tracking datasets. Overall, our workflow offers a transferable approach for researchers aiming to standardize wildlife telemetry datasets and conduct ecological analyses for both individual studies and large-scale collaborations.

California, Colorado, Idaho, Montana, Nevada, Nort↗
USGS2005

A multilocus population genetic survey of greater sage-grouse across their range

The distribution and abundance of the greater sage-grouse ( Centrocercus urophasianus ) have declined dramatically, and as a result the species has become the focus of conservation efforts. We conducted a range-wide genetic survey of the species which included 46 populations and over 1000 individuals using both mitochondrial sequence data and data from seven nuclear microsatellites. Nested clade and structure analyses revealed that, in general, the greater sage-grouse populations follow an isolation-by-distance model of restricted gene flow. This suggests that movements of the greater sage-grouse are typically among neighbouring populations and not across the species, range. This may have important implications if management is considering translocations as they should involve neighbouring rather than distant populations to preserve any effects of local adaptation. We identified two populations in Washington with low levels of genetic variation that reflect severe habitat loss and dramatic population decline. Managers of these populations may consider augmentation from geographically close populations. One population (Lyon/Mono) on the southwestern edge of the species’ range appears to have been isolated from all other greater sage-grouse populations. This population is sufficiently genetically distinct that it warrants protection and management as a separate unit. The genetic data presented here, in conjunction with large-scale demographic and habitat data, will provide an integrated approach to conservation efforts for the greater sage-grouse.

Molecular Ecology↗
USGS2025

Predator-induced injury of a neonatal pronghorn cues abandonment of current reproductive investment

Evolutionary theory predicts that parental care is favored when the fitness benefits outweigh the costs of providing care (Klug et al., 2012 ). In mammals, parental care is generally provided by females, who provide nourishment through lactation, protection from predators, aid in juvenile movement, or otherwise facilitate offspring survival (Balshine, 2012 ; Lent, 1974 ). However, in capital breeding species that rely on stored energy reserves for reproduction, increased investment can reduce the female's body condition and the number of offspring produced in subsequent years (Balme et al., 2017 ; Cook et al., 2013 ; Stephens et al., 2009 ). Unlike income breeders, which produce offspring from concurrent energy uptake, capital breeders deplete energy stores during reproduction, and lactation hinders the recovery of these stores (Clutton-Brock et al., 1983 ; Cook et al., 2013 ; Stephens et al., 2009 ). Consequently, iteroparous mammals face a trade-off between investing in current offspring and investing in maintenance or future offspring (Hamel et al., 2010 ; Stearns, 1989 ; Williams, 1966 ).

Ecology↗
USGS2016

Space use and habitat selection by resident and transient red wolves ( Canis rufus )

Recovery of large carnivores remains a challenge because complex spatial dynamics that facilitate population persistence are poorly understood. In particular, recovery of the critically endangered red wolf ( Canis rufus ) has been challenging because of its vulnerability to extinction via human-caused mortality and hybridization with coyotes ( Canis latrans ). Therefore, understanding red wolf space use and habitat selection is important to assist recovery because key aspects of wolf ecology such as interspecific competition, foraging, and habitat selection are well-known to influence population dynamics and persistence. During 2009–2011, we used global positioning system (GPS) radio-telemetry to quantify space use and 3 rd -order habitat selection for resident and transient red wolves on the Albemarle Peninsula of eastern North Carolina. The Albemarle Peninsula was a predominantly agricultural landscape in which red wolves maintained spatially stable home ranges that varied between 25 km 2 and 190 km 2 . Conversely, transient red wolves did not maintain home ranges and traversed areas between 122 km 2 and 681 km 2 . Space use by transient red wolves was not spatially stable and exhibited shifting patterns until residency was achieved by individual wolves. Habitat selection was similar between resident and transient red wolves in which agricultural habitats were selected over forested habitats. However, transients showed stronger selection for edges and roads than resident red wolves. Behaviors of transient wolves are rarely reported in studies of space use and habitat selection because of technological limitations to observed extensive space use and because they do not contribute reproductively to populations. Transients in our study comprised displaced red wolves and younger dispersers that competed for limited space and mating opportunities. Therefore, our results suggest that transiency is likely an important life-history strategy for red wolves that facilitates metapopulation dynamics through short- and long-distance movements and eventual replacement of breeding residents lost to mortality.

North Carolina↗
USGS2020

Conservation reliance of a threatened snake on rice agriculture

Conservation-reliant species require perpetual management by humans to persist. But do species that persist largely in human-dominated landscapes actually require conditions maintained by humans? Because most extant populations of giant gartersnakes (Thamnophis gigas) inhabit the highly modified rice agricultural regions of the Sacramento Valley, we sought to evaluate whether giant gartersnakes are indeed a conservation-reliant species dependent on maintenance of rice agriculture and its infrastructure for their continued existence. Specifically, we examined the extent to which giant gartersnakes use rice fields themselves, and whether survival of adult giant gartersnakes was influenced by the amount of rice grown near their home ranges and daily movements. We found that although giant gartersnakes only use rice fields minimally and then only between mid-June and early September, their survival was lower when less rice agriculture was available near the areas they inhabited. Survival was particularly low in early spring, when giant gartersnakes emerge from brumation but rice fields are not yet flooded. The incongruity between the phenology of rice growing and giant gartersnake foraging requirements suggests that although giant gartersnakes are reliant on the rice agroecosystem, rice agriculture is likely suboptimal habitat for giant gartersnakes. Giant gartersnakes’ reliance on the rice agroecosystem challenges the notion of preservation-based conservation, but provides opportunities for win-win scenarios benefitting both rice farmers and giant gartersnakes. Our study highlights that in addition to land use, the timing of land management might be crucial for conservation-reliant species.

Global Ecology and Conservation↗
USGS1992

The mating behavior of Iguana iguana

Over a 19 month period I observed the social behaviors of individually recognized green iguanas, Iguana iguana, at three sites in the llanos of Venezuela. The behavior of iguanas outside the mating season differed from that seen during the mating season in three major ways: (1) during normal waking hours outside the breeding season, adult iguanas spent the majority of time immobile, apparently resting; (2) their interactions involved fewer high intensity displays; and (3) their day to day movements were often nomadic. During the mating season, one site was watched continuously during daylight hours (iguanas sleep throughout the night), allowing a complete count of all copulation attempts (N = 250) and territorial interactions. At all sites, dominant males controlled access to small mating territories. Within the territories there did not appear to be any resources needed by females or their offspring. Thus, females could choose mates directly on the basis of male phenotype. Females aggregated in the mating territories of the largest males and mated preferentially with them. Territorial males copulated only once per day, although on several occasions more than one resident female was receptive on the same day. A few small nonterritorial males exhibited pseudofemale behavior (i.e., they abstained from sexual competition), but most nonterritorial males stayed on the periphery of mating territories and attempted to force copulations on unguarded females (peripheral male behavior). Uncooperative females were mounted by as many as three males simultaneously. Females resisted 95% of the 200 observed mating attempts by peripheral males, but only 56% of the attempts by territorial males (N = 43). The selectivity of the females probably increased the genetic representation of the territorial males in the next generation. During the mating season females maintained a dominance hierarchy among themselves. Low ranked females tended to be excluded from preferred mating territories. In this system, both sexes may be subjected to sexual selection. I hypothesize that the ecological factors responsible for the unusual mating system are related to the lack of defendable resources, the iguana's folivory, and the high density of iguanas present in preferred mating areas.

Smithsonian Contributions to Zoology↗
USGS2017

Potential implications of acoustic stimuli as a non-physical barrier to silver carp and bighead carp

The effectiveness of an acoustic barrier to deter the movement of silver carp, Hypophthalmichthys molitrix (Valenciennes ) and bighead carp, H. nobilis (Richardson) was evaluated. A pond (10 m × 5 m × 1.2 m) was divided in half by a concrete-block barrier with a channel (1 m across) allowing fish access to each side. Underwater speakers were placed on each side of the barrier opening, and an outboard motor noise (broadband sound; 0.06–10 kHz) was broadcast to repel carp that approached within 1 m of the channel. Broadband sound was effective at reducing the number of successful crossings in schools of silver carp, bighead carp and a combined school. Repulsion rates were 82.5% (silver carp), 93.7% (bighead carp) and 90.5% (combined). This study demonstrates that broadband sound is effective in deterring carp and could be used as a deterrent in an integrated pest management system.

Fisheries Management and Ecology↗
USGS2022

Pleistocene–Holocene vicariance, not Anthropocene landscape change, explains the genetic structure of American black bear (Ursus americanus) populations in the American Southwest and northern Mexico

The phylogeography of the American black bear ( Ursus americanus ) is characterized by isolation into glacial refugia, followed by population expansion and genetic admixture. Anthropogenic activities, including overharvest, habitat loss, and transportation infrastructure, have also influenced their landscape genetic structure. We describe the genetic structure of the American black bear in the American Southwest and northern Mexico and investigate how prehistoric and contemporary forces shaped genetic structure and influenced gene flow. Using a suite of microsatellites and a sample of 550 bears, we identified 14 subpopulations organized hierarchically following the distribution of ecoregions and mountain ranges containing black bear habitat. The pattern of subdivision we observed is more likely a product of postglacial habitat fragmentation during the Pleistocene and Holocene, rather than a consequence of contemporary anthropogenic barriers to movement during the Anthropocene. We used linear mixed-effects models to quantify the relationship between landscape resistance and genetic distance among individuals, which indicated that both isolation by resistance and geographic distance govern gene flow. Gene flow was highest among subpopulations occupying large tracts of contiguous habitat, was reduced among subpopulations in the Madrean Sky Island Archipelago, where montane habitat exists within a lowland matrix of arid lands, and was essentially nonexistent between two isolated subpopulations. We found significant asymmetric gene flow supporting the hypothesis that bears expanded northward from a Pleistocene refugium located in the American Southwest and northern Mexico and that major highways were not yet affecting gene flow. The potential vulnerability of the species to climate change, transportation infrastructure, and the US–Mexico border wall highlights conservation challenges and opportunities for binational collaboration.

Arizona, New Mexico, Utah, Wyoming↗
USGS2021

Modeling watershed carbon dynamics as affected by land cover change and soil erosion

Process-based ecosystem carbon cycle models typically incorporate vegetation growth, vegetation mortality, and soil respiration as well as the biotic and environmental drivers that influence these variables. However, few spatially explicit process models can efficiently incorporate the influence of land cover change and carbon lateral movement at regional scales or high spatial resolution. This study uses the Land Use and Carbon Scenario Simulator (LUCAS) to demonstrate the development of a fast ecosystem model that not only considers the basic carbon cycle but also incorporates the impact of land cover change, soil erosion, and soil deposition. As input to the LUCAS modeling framework, we used the integrated biosphere simulator (IBIS) to simulate a non-spatial reference carbon cycling scenario without considering land cover change for the Nisqually River watershed in the northwestern United States. We then used the Land Change Monitoring, Assessment, and Projection (LCMAP) remotely sensed 30-m sequential land cover data to generate annual land change history for the Nisqually River area from 1985 to 2017 and used the Unit Stream Powered Erosion and Deposition model (USPED) to estimate annual soil carbon lateral movement. Finally, we combined the annual carbon outputs from IBIS, the land change history from LCMAP, and the soil erosion and deposition from USPED within the LUCAS simulation framework. Results showed that from 1985 to 2017, along with the dynamic land cover changes, total ecosystem biomass carbon increased from 11.4 to 18.6 TgC, mainly due to forest growth. Total ecosystem soil carbon declined from 31.7 to 29.7 TgC, but the overall loss in soil carbon was not uniform across land cover types. Forestland (forest sector) and grassland lost carbon, while wetland, developed land and agricultural land gained carbon. Forest, grassland, and developed land lost 0.0553 TgC during the study period (1.73 Gg of C per year; 1 Gg = 0.001 Tg) from erosion, while wetland gained 0.0071 TgC (0.22 Gg C per year) from deposition. Agricultural land was neutral in terms of soil erosion.

Washington↗
USGS2015

Female sea lamprey shift orientation toward a conspecific chemical cue to escape a sensory trap

The sensory trap model of signal evolution hypothesizes that signalers adapt to exploit a cue used by the receiver in another context. Although exploitation of receiver biases can result in conflict between the sexes, deceptive signaling systems that are mutually beneficial drive the evolution of stable communication systems. However, female responses in the nonsexual and sexual contexts may become uncoupled if costs are associated with exhibiting a similar response to a trait in both contexts. Male sea lamprey ( Petromyzon marinus ) signal with a mating pheromone, 3-keto petromyzonol sulfate (3kPZS), which may be a match to a juvenile cue used by females during migration. Upstream movement of migratory lampreys is partially guided by 3kPZS, but females only move toward 3kPZS with proximal accuracy during spawning. Here, we use in-stream behavioral assays paired with gonad histology to document the transition of female preference for juvenile- and male-released 3kPZS that coincides with the functional shift of 3kPZS as a migratory cue to a mating pheromone. Females became increasingly biased toward the source of synthesized 3kPZS as their maturation progressed into the reproductive phase, at which point, a preference for juvenile odor (also containing 3kPZS naturally) ceased to exist. Uncoupling of female responses during migration and spawning makes the 3kPZS communication system a reliable means of synchronizing mate search. The present study offers a rare example of a transition in female responses to a chemical cue between nonsexual and sexual contexts, provides insights into the origins of stable communication signaling systems.

Behavioral Ecology↗
USGS2019

Migration triggers in a large herbivore: Galapagos giant tortoises navigating resources gradients on volcanoes

To understand how migratory behavior evolved and to predict the future of migratory species in the face of global environmental change it is important to quantify intra- and inter-individual variation in migratory behavior. Intra-individual variation includes behavioral response to changing environmental conditions and hence behavioral plasticity in the context of novel conditions. Inter-individual variation determines the degree of variation on which selection can act and the rate of evolutionary response to changes in average and extreme environmental conditions. Here we focus on variation in the partial migratory behavior of Galapagos giant tortoises ( Chelonoidis spp.), which exhibit high fidelity to migratory routes over many years. We evaluate the extent and mechanisms by which tortoises adjust migration timing in response to varying annual environmental conditions, integrating movement data within a bioenergetic model of tortoise migration to quantify the fitness consequences of migration timing. We find strong inter-individual variation in the timing of migration, which was not affected by environmental conditions prevailing at the time of migration but rather by marginal expectations estimated from multi-annual averaged conditions, leading to an average annual loss in efficiency of ~15% relative to optimal timing based on year-specific conditions. These results point towards a limited ability of tortoises to adjust the timing of their migrations based on prevailing (and, by extension, future) conditions, suggesting that the adaptability of tortoise migratory behavior to changing conditions is predicated more on past “normal” conditions than responsive to current, changing conditions. Our work offers insights into the level of environmental-tuning in migratory behavior and a general framework for future research across taxa.

Galapagos Islands↗
USGS2008

Simulating the impact of cholinesterase-inhibiting pesticides on non-target wildlife in irrigated crops

We present a simulation model for risk assessment of the impact of insecticide inhibitors of cholinesterase (ChE) applied in irrigated agricultural fields on non-target wildlife. The model, which we developed as a compartment model based on difference equations (??t = 1 h), consists of six submodels describing the dynamics of (1) insecticide application, (2) insecticide movement into floodable soil, (3) irrigation and rain, (4) insecticide dissolution in water, (5) foraging and insecticide intake from water, and (6) ChE inhibition and recovery. To demonstrate application of the model, we simulated historical and "worst-case" scenarios of the impact of ChE-inhibiting insecticides on white-winged doves (Zenaida asiatica) inhabiting natural brushland adjacent to cotton and sugarcane fields in the Lower Rio Grande Valley of Texas, USA. Only when a rain event occurred just after insecticide application did predicted levels of ChE inhibition surpass the diagnostic level of 20% exposure. The present model should aid in assessing the effect of ChE-inhibiting insecticides on ChE activity of different species that drink contaminated water from irrigated agricultural fields, and in identifying specific situations in which the juxtaposition of environmental conditions and management schemes could result in a high risk to non-target wildlife. ?? 2007 Elsevier B.V. All rights reserved.

Ecological Modelling↗
USGS1985

Foraging decisions, patch use, and seasonality in egrets (Aves: ciconiiformes)

Feeding Snowy (Egretta thula) and Great (Casmerodius albus) egrets were observed during two breeding seasons in coastal New Jersey and two brief winter periods in northeast Florida. A number of tests based on assumptions of foraging models, predictions from foraging theory, and earlier empirical tests concerning time allocation and movement in foraging patches was made. Few of the expectations based on foraging theory and/or assumptions were supported by the empirical evidence. Snowy Egrets fed with greater intensity and efficiency during the breeding season (when young were being fed) than during winter. They also showed some tendency to leave patches when their capture rate declined, and they spent more time foraging in patches when other birds were present nearby. Great Egrets, in Contrast, showed few of these tendencies, although they did leave patches when their intercapture intervals increased. Satiation differences had some influence on feeding rates in Snowy Egrets, but only at the end of feeding bouts. Some individuals of both species revisited areas in patches that had recently been exploited, and success rates were usually higher after the second visit. Apparently, for predators of active prey, short—term changes in resource availability ( r esource depression ) may be more important than resource depletion, a common assumption in most OFT models.

Florida, New Jersey↗
USGS2021

Fish response to successive clearcuts in a second-growth forest from the central Coast range of Oregon

Research dating back to the 1950 s has documented negative effects from harvesting of primeval forests on stream ecosystems of the Pacific Northwest. By the early 1990 s, state and federal forest practice rules governing timber harvest were modified throughout North America to better protect aquatic habitats and biotic resources, principally salmonids. These rules inspired a generation of studies using a before-after-control-impact (BACI) design to document the capacity of contemporary timber harvest rules to protect salmonids in headwater streams of second-growth forests. One important unanswered question concerns the potential effects of successive clearcuts in second growth forests. Consequently, we used a paired watershed approach to evaluate the effects of two successive clearcut harvests in the Alsea Watershed, site of the seminal Alsea Watershed Study that was conducted from 1958 to 1973, on relative biomass, movement, survival, and distribution of coastal cutthroat trout ( Oncorhynchus clarkii clarkii ) and three physical habitat characteristics (pool area and depth, and water temperature). Although the total clearcut harvest encompassed 87% of the treatment catchment in six years, no negative effects of logging were detected for either age-1 + coastal cutthroat trout or habitat variables. Comparisons between the harvested and reference catchments suggested the survival of coastal cutthroat trout (>94 mm fork length) and total catchment relative biomass of age-1+ (i.e., > 80 mm) exhibited similar patterns, increasing from the pre-logging period (2006–2009) through the Phase I post-logging period (2009–2014), and decreasing to levels observed in the pre-logging period during the Phase II post-logging period (2014–2017). Additionally, there was no evidence for differences in movement of coastal cutthroat trout related to the harvesting treatment. In terms of habitat variables, there was a relative increase in annual total pool area in the harvested catchment during the Phase II post-logging period, but there was no evidence the 7-day moving mean maximum stream temperature changed after the Phase I and Phase II harvests. Moreover, stream water temperatures never exceeded the criterion designed to protect core coldwater habitat for salmonids (16 °C). As such, it is unlikely that cutthroat trout experienced thermal stress following either harvest. More generally, results from this and other recent studies suggest that forest practice rules developed in conjunction with current best management practices for logging in headwater catchments have substantially improved outcomes for stream biota relative to unregulated forest harvest, at least for short periods of time after logging (i.e., ≤ 8 years).

Oregon↗
USGS2020

How and why is the timing and occurrence of seasonal migrants in the Gulf of Maine changing due to climate?

Plants and animals undergo certain recurring life-cycle events, such as migrations between summer and winter habitats or the annual blooming of plants. Known as phenology, the timing of these events is very sensitive to changes in climate (and changes in one species’ phenology can impact entire food webs and ecosystems). Shifts in phenology have been described as a “fingerprint” of the temporal and spatial responses of wildlife to climate change impacts. Thus, phenology provides one of the strongest indicators of the adaptive capacity of organisms (or the ability of organisms to cope with future environmental conditions). In this study, researchers are exploring how the timing and occurrence of a number of highly migratory marine animals is changing due to a series of climatic and ecological shifts. First, using existing long-term historical data series, they will determine the direction and magnitude of how migration, abundance, or other phenological factors have changed for marine mammals, sea turtles, and fishes that migrate into the Gulf of Maine on a seasonal basis. Because marine animals are inherently difficult to detect, the team will apply dynamic occupancy models to evaluate seasonal migration patterns and habitat use across multiple habitats in the Gulf of Maine region. The project team will also synthesize regional information on a key, ecologically-important prey fish, sandlance, whose timing and abundance is a strong predictor of the occurrence and behavior of predator species targeted in this study as well as a range of other regional fish and wildlife of conservation and management concern. Results from this component of the project will identify coastal fish and wildlife species that are relatively more or less able to adapt and thus potentially vulnerable to climate change; determine the likely primary drivers of those changes; and identify data gaps and future monitoring needs. Ultimately, this information will be available and useful for regional coastal management and adaptation decisions that will allow managers to effectively plan for the future. In a second component of the project, researchers will focus specifically on changes in migration patterns of the endangered North Atlantic right whale. While shifts in the distribution and time of recurring life events are adaptive responses that may help species cope with climate impacts, they can also lead to changes in how species interact with humans. The North Atlantic right whale is one of the most endangered whale species on the planet. In the North Atlantic Ocean, ship strikes and entanglements with commercial fishing gear represent fatal threats to right whales. Recent reports suggest that North Atlantic right whale migration patterns have changed. Many researchers posit that shifts in migration are responsible for recent increases in the overlap between right whales and human activities, especially fishing. To help understand how changes in right whale movements and behaviors may overlap with ship traffic, and thus put the animals at risk of encountering vessels, we will combine right whale habitat models with ship traffic maps. The end result will be a set of maps identifying risk levels.

Gulf of Maine↗
USGS2015

Suspended sediment transport trough a large fluvial-tidal channel network

The confluence of the Sacramento and San Joaquin Rivers, CA, forms a large network of interconnected channels, referred to as the Sacramento-San Joaquin Delta (the Delta). The Delta comprises the transition zone from the fluvial influences of the upstream rivers and tidal influences of San Francisco Bay downstream. Formerly an extensive tidal marsh, the hydrodynamics and geomorphology of Delta have been substantially modified by humans to support agriculture, navigation, and water supply. These modifications, including construction of new channels, diking and draining of tidal wetlands, dredging of navigation channels, and the operation of large pumping facilities for distribution of freshwater from the Delta to other parts of the state, have had a dramatic impact on the physical and ecological processes within the Delta. To better understand the current physical processes, and their linkages to ecological processes, the USGS maintains an extensive network of flow, sediment, and water quality gages in the Delta. Flow gaging is accomplished through use of the index-velocity method, and sediment monitoring uses turbidity as a surrogate for suspended-sediment concentration. Herein, we present analyses of the transport and dispersal of suspended sediment through the complex network of channels in the Delta. The primary source of sediment to the Delta is the Sacramento River, which delivers pulses of sediment primarily during winter and spring runoff events. Upon reaching the Delta, the sediment pulses move through the fluvial-tidal transition while also encountering numerous channel junctions as the Sacramento River branches into several distributary channels. The monitoring network allows us to track these pulses through the network and document the dominant transport pathways for suspended sediment. Further, the flow gaging allows for an assessment of the relative effects of advection (the fluvial signal) and dispersion (from the tides) on the sediment pulses as they move through the system. Herein, we present analyses of the “first flush” sediment pulse that occurred on the Sacramento River in December 2012, documenting the transport pathways as well as the effects of advection and dispersion on the sediment as it moved through the fluvial-tidal transition in the Delta. The analyses identified an important transport pathway through the interior of the Delta toward the large pumping facilities in the south Delta, which has important implications for native fish (because their movements are triggered by sediment/turbidity). The results also reveal the dramatic transition from fluvial-dominated transport (advection) to tidal-dominated transport (dispersion) as the sediment pulse approaches the estuary.

California↗
USGS2017

Pneumonia in bighorn sheep: Risk and resilience

Infectious disease was an important driver of historic declines and extirpations of bighorn sheep (Ovis canadensis) in North America and continues to impede population restoration and management. Domestic sheep have long been linked to pneumonia outbreaks in bighorn sheep and this association has now been confirmed in 13 captive commingling experiments. However, ecological and etiological complexities still hinder our understanding and control of the disease. We provide an overview of the current state of knowledge about the biology and management of respiratory disease in bighorn sheep and propose strategies for moving forward. Epizootic pneumonia in bighorn sheep is polymicrobial. Mycoplasma ovipneumoniae, a bacterium host-specific to Caprinae and commonly carried by healthy domestic sheep and goats appears to be a necessary primary agent. All-age epizootics following introduction of M. ovipneumoniae along with other pathogens into bighorn sheep populations are usually severe (median mortality 47%) but fatality rates vary widely, from 15 – 100%. Disease severity may be influenced by the strain of M. ovipneumoniae, by secondary bacterial and viral pathogens, and by factors affecting transmission and host immunity. Once introduced, M. ovipneumoniae can persist in bighorn sheep populations for decades. Carrier dams transmit the pathogen to their susceptible lambs, triggering fatal pneumonia outbreaks in nursery groups, which limits recruitment and slows or prevents population recovery. The result is that demographic costs of pathogen persistence often outweigh the impacts of the initial invasion and die-off. There is currently no effective vaccine or antibiotic for domestic or wild sheep and to date, no management actions have been successful in reducing morbidity, mortality, or disease spread once pathogen invasion has occurred. Molecular-based strain typing suggests that spillover of M. ovipneumoniae into bighorn sheep populations from domestic small ruminants is ongoing, and that consequences of pathogen invasion are amplified by movements of infected bighorn sheep. Therefore, current disease management strategies focus on reducing risk of spillover from reservoir populations of domestic small ruminants and on limiting transmission among bighorn sheep. A broad array of approaches has been tried and more are needed to prevent pathogen introduction, induce disease fadeout in persistently infected populations, and promote population resilience across the diverse landscapes bighorn sheep inhabit. A comprehensive examination of disease dynamics across populations could help elucidate how disease fades out naturally and if population resilience can be increased in the face of infection. Cross-jurisdictional adaptive management experiments and transdisciplinary collaboration, including partnerships with members of the domestic sheep and goat community, are needed to facilitate innovation and speed progress towards sustainable solutions for managing pneumonia to protect and restore bighorn sheep populations.

California, Idaho, Nevada, Oregon, Utah, Washingto↗