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USGS2020

Assessing native fish restoration potential in Catoctin Mountain Park

Biological conservation is a fundamental purpose of the National Park system, and Catoctin Mountain Park (CATO) supports high-quality habitat for native fishes in the headwaters of the Chesapeake Bay watershed in eastern North America. However, native Blue Ridge sculpin ( Cottus caeruleomentum ) have been extirpated in Big Hunting Creek above Cunningham Falls in CATO. Prior research indicates that infection by the fungal-like protist Dermocystidium is a likely cause for the extirpation, but elevated stream temperatures also have been observed in the study area, and it remains unknown whether thermal stress may exacerbate infections or otherwise limit habitat suitability for fishes in CATO. The purpose of this study was to quantify spatial variation in summer stream temperatures and to evaluate the effects of temperature on sculpin growth rates and susceptibility to Dermocystidium infection. We used observational and experimental methods to address these objectives. First, we deployed stream temperature gages at 10 sites throughout the study area to assess hourly and daily temperatures during the summer of 2019. Second, we conducted an in situ fish enclosure experiment at five of the temperature sites to assess fish growth and susceptibility to Dermocystidium infection over a 45-day exposure period. For this experiment we collected sculpin from a stream in CATO that supports a robust population of Blue Ridge sculpin (Owens Creek) and held them in quarantine for 50 days in the Experimental Stream Laboratory at the U.S. Geological Survey (USGS) Leetown Science Center. Pre-exposure histopathology confirmed the absence of Dermocystidium infection prior to the introduction of fish into experimental enclosures. We found that stream temperatures were warmer where sculpin have been extirpated than elsewhere in CATO where sculpin persist. However, the fish enclosure experiment revealed a positive effect of temperature on fish growth, suggesting that increased food availability and foraging rates compensated for increased metabolic demands in the warmest sites. Moreover, fish held in enclosures did not develop Dermocystidium infection. Our results therefore suggest that current environmental conditions in upper Big Hunting Creek may be suitable for Blue Ridge sculpin reintroduction, and this could ultimately lead to sportfishing opportunities by increasing the forage base for native brook trout ( Salvelinus fontinalis ).

Maryland↗

USGS2018

Open hydrology courseware using the United States Geological Survey’s National Water Census Data Portal

The U.S. Geological Survey (USGS) is the primary U.S. Government agency for water data collection and dissemination. In this role, the USGS has recently created and deployed a National Water Census Data Portal (NWC-DP) which provides access to streamflow, evapotransporation, precipitation, aquatic biology and other data at the national level. Recognizing the value of these data sets for hydrologic science education, this paper presents an effort to bridge the gap between pencil–and-paper-based hydrology curriculum and the USGS NWC-DP resource. Specifically, we have developed an R package, National Water Census Education (NWCEd), and five associated laboratory exercises that integrate R- and web-services-based access to the NWC-DP data sets. Using custom functions built into the NWCEd, students are able to access unprecedented amounts of hydrologic data from the NWC-DP, which can be applied to current hydrology curriculum and analyzed using NWCEd and a number of other open-source R tools.

Open Water Journal↗

USGS2015

EverVIEW: a visualization platform for hydrologic and Earth science gridded data

The EverVIEW Data Viewer is a cross-platform desktop application that combines and builds upon multiple open source libraries to help users to explore spatially-explicit gridded data stored in Network Common Data Form (NetCDF). Datasets are displayed across multiple side-by-side geographic or tabular displays, showing colorized overlays on an Earth globe or grid cell values, respectively. Time-series datasets can be animated to see how water surface elevation changes through time or how habitat suitability for a particular species might change over time under a given scenario. Initially targeted toward Florida's Everglades restoration planning, EverVIEW has been flexible enough to address the varied needs of large-scale planning beyond Florida, and is currently being used in biological planning efforts nationally and internationally.

Computers & Geosciences↗

USGS2019

Nearshore survey and cleanup of benthic marine debris using citizen science divers along the Mediterranean coast of Israel

Information on marine debris along the Mediterranean coast of Israel, especially on the seafloor, is limited. Many recreational divers are enthusiasts of marine conservation and can thus contribute to data collection which does not require highly specialized training. The Society for the Protection of Nature in Israel together with The Israeli Diving Federation established the diver volunteer program “Sea Guard” (“Mishmar Hayam” in Hebrew), which supports marine conservation through citizen science. The divers were trained in marine ecology and survey methods to conduct independent surveys and lead underwater cleanups. For the first time, we have described the patterns of benthic debris density and composition in the nearshore environment of the southeastern part of the Mediterranean Sea. We found that benthic marine debris in the nearshore along the Israeli Mediterranean coast is primarily plastic, likely originating from the use of local beaches. Fishing, boating and domestic activities also play an important role as sources for marine debris. The currents' regime prevented the debris from accumulating on the seafloor in the nearshore environment, with the exception of several “debris traps”. Our findings will be useful for the development of programs to improve coastal waste management.

Ocean and Coastal Management↗

USGS2021

Long-term ecosystem and biogeochemical research in Loch Vale watershed, Rocky Mountain National Park, Colorado

Loch Vale watershed was instrumented in 1983 with initial support from the National Acid Precipitation Assessment Program to ask whether ecosystems of Rocky Mountain National Park (RMNP) were affected by acidic atmospheric deposition. Research and monitoring activities were expanded in 1991 by the U.S. Geological Survey Water, Energy, and Biogeochemical Budgets program to understand the processes, and their interactions, controlling water, energy, and biogeochemical fluxes. With help from many collaborators we have characterized trends and patterns in atmospheric deposition, climate, and hydrology, including glaciers and other ice features. Instead of acidic deposition, we documented high atmospheric inputs of reactive nitrogen (Nr), and have studied the ecological consequences in soils, surface water, and vegetation. Using paleolimnology, we documented the onset of human-caused change to lake primary producers ca. 1950 in response to increased Nr deposition and warming. Our results provided the basis for the Colorado Nitrogen Deposition Reduction Plan, a state policy that aims to reduce Nr emissions to protect resources in RMNP by 2032. Carbon cycle research revealed mountain wetlands now release more carbon than they store, and respiration and methane flux occurs even during winter through deep snow packs. Trend analyses found export of Nr to be closely tied to atmospheric inputs, but can lag in response to drought. Current research explores consequences of the combination of warming, changes in precipitation dynamics, and atmospheric deposition of Nr and dust on stream and lake CO 2 dynamics, lake biology and trophic state, and soil carbon composition. Dramatic increases in park visitors have prompted studies on the effects of recreational use on water quality. New tools such as remote sensing and high frequency instream water quality sensors are being applied to lake and stream studies. Monitoring, combined with experiments, models, and spatial comparisons is an essential foundation for science-based resource management.

Colorado↗

USGS2020

Hydrologic conditions in Kansas, water year 2019

The U.S. Geological Survey Kansas Water Science Center, in cooperation with Federal, State, and local agencies, maintains a long-term network of hydrologic monitoring stations in the State of Kansas. These include a network of 217 real-time streamgages and 12 real-time reservoir-level monitoring stations in water year 2019. The data and associated analyses from the streamgages and monitoring stations provide a unique overview of hydrologic conditions and help improve the understanding of Kansas’ water resources. Annual assessments of hydrologic conditions are made by comparing statistical analyses of current and past water year data for the period of record. Long-term monitoring of hydrologic conditions in Kansas provides imperative information for many uses including managing water resources and protecting human life and property and promoting agricultural practices, industrial activities, operation of reservoirs , development of infrastructure, ecological assessments, and recreational purposes.

Kansas↗

USGS2003

Hydric soils in a southeastern Oregon vernal pool

Vernal pools on the High Lava Plain of the northern Great Basin become ponded in most years, but their soils exhibit weak redoximorphic features indicative of hydric conditions. We studied the hydrology, temperature, redox potentials, soil chemistry, and soil morphology of a vernal pool to determine if the soils are hydric, and to evaluate hydric soil field indicators. We collected data for 3 yr from piezometers, Pt electrodes, and thermocouples. Soil and water samples were analyzed for pH, organic C, and extractable Fe and Mn. Soils were ponded from January through April or May, but subsurface saturation was never detected. Soil temperatures 50 cm below the surface rose above 5°C by March. Clayey Bt horizons perched water and limited saturation to the upper 10 cm. Redox potentials at a 5-cm depth were often between 200 and 300 mV, indicating anaerobic conditions, but producing soluble Fe 2+ concentrations <1 mg L −1 Extractable soil Fe contents indicated Fe depletion from pool surface horizons and accumulation at or near the upper Bt1 horizon. Depletions and concentrations did not satisfy the criteria of any current hydric soil indicators. We recommend development of new indicators based on acceptance of fewer, less distinct redox concentrations for recognition of a depleted A horizon, and on presence of a thin zone containing redox concentrations located in the upper part of the near-surface perching horizon.

Soil Science Society of America Journal↗

USGS2016

Electrofishing effort requirements for estimating species richness in the Kootenai River, Idaho

This study was conducted on the Kootenai River, Idaho to provide insight on sampling requirements to optimize future monitoring effort associated with the response of fish assemblages to habitat rehabilitation. Our objective was to define the electrofishing effort (m) needed to have a 95% probability of sampling 50, 75, and 100% of the observed species richness and to evaluate the relative influence of depth, velocity, and instream woody cover on sample size requirements. Sidechannel habitats required more sampling effort to achieve 75 and 100% of the total species richness than main-channel habitats. The sampling effort required to have a 95% probability of sampling 100% of the species richness was 1100 m for main-channel sites and 1400 m for side-channel sites. We hypothesized that the difference in sampling requirements between main- and side-channel habitats was largely due to differences in habitat characteristics and species richness between main- and side-channel habitats. In general, main-channel habitats had lower species richness than side-channel habitats. Habitat characteristics (i.e., depth, current velocity, and woody instream cover) were not related to sample size requirements. Our guidelines will improve sampling efficiency during monitoring effort in the Kootenai River and provide insight on sampling designs for other large western river systems where electrofishing is used to assess fish assemblages.

Idaho↗

USGS2017

Community tools for cartographic and photogrammetric processing of Mars Express HRSC images

The High Resolution Stereo Camera (HRSC) on the Mars Express orbiter (Neukum et al. 2004) is a multi-line pushbroom scanner that can obtain stereo and color coverage of targets in a single overpass, with pixel scales as small as 10 m at periapsis. Since commencing operations in 2004 it has imaged ~ 77 % of Mars at 20 m/pixel or better. The instrument team uses the Video Image Communication And Retrieval (VICAR) software to produce and archive a range of data products from uncalibrated and radiometrically calibrated images to controlled digital topographic models (DTMs) and orthoimages and regional mosaics of DTM and orthophoto data (Gwinner et al. 2009; 2010b; 2016). Alternatives to this highly effective standard processing pipeline are nevertheless of interest to researchers who do not have access to the full VICAR suite and may wish to make topographic products or perform other (e. g., spectrophotometric) analyses prior to the release of the highest level products. We have therefore developed software to ingest HRSC images and model their geometry in the USGS Integrated Software for Imagers and Spectrometers (ISIS3), which can be used for data preparation, geodetic control, and analysis, and the commercial photogrammetric software SOCET SET (® BAE Systems; Miller and Walker 1993; 1995) which can be used for independent production of DTMs and orthoimages. The initial implementation of this capability utilized the then-current ISIS2 system and the generic pushbroom sensor model of SOCET SET, and was described in the DTM comparison of independent photogrammetric processing by different elements of the HRSC team (Heipke et al. 2007). A major drawback of this prototype was that neither software system then allowed for pushbroom images in which the exposure time changes from line to line. Except at periapsis, HRSC makes such timing changes every few hundred lines to accommodate changes of altitude and velocity in its elliptical orbit. As a result, it was necessary to split observations into blocks of constant exposure time, greatly increasing the effort needed to control the images and collect DTMs. Here, we describe a substantially improved HRSC processing capability that incorporates sensor models with varying line timing in the current ISIS3 system (Sides 2017) and SOCET SET. This enormously reduces the work effort for processing most images and eliminates the artifacts that arose from segmenting them. In addition, the software takes advantage of the continuously evolving capabilities of ISIS3 and the improved image matching module NGATE (Next Generation Automatic Terrain Extraction, incorporating area and feature based algorithms, multi-image and multi-direction matching) of SOCET SET, thus greatly reducing the need for manual editing of DTM errors. We have also developed a procedure for geodetically controlling the images to Mars Orbiter Laser Altimeter (MOLA) data by registering a preliminary stereo topographic model to MOLA by using the point cloud alignment ( pc_align ) function of the NASA Ames Stereo Pipeline (ASP; Moratto et al. 2010). This effectively converts inter-image tiepoints into ground control points in the MOLA coordinate system. The result is improved absolute accuracy and a significant reduction in work effort relative to manual measurement of ground control. The ISIS and ASP software used are freely available; SOCET SET, is a commercial product. By the end of 2017 we expect to have ported our SOCET SET HRSC sensor model to the Community Sensor Model (CSM; Community Sensor Model Working Group 2010; Hare and Kirk 2017) standard utilized by the successor photogrammetric system SOCET GXP that is currently offered by BAE. In early 2018, we are also working with BAE to release the CSM source code under a BSD or MIT open source license.

The International Archives of the Photogrammetry, ↗

USGS2016

Clawpack: Building an open source ecosystem for solving hyperbolic PDEs

Clawpack is a software package designed to solve nonlinear hyperbolic partial differential equations using high-resolution finite volume methods based on Riemann solvers and limiters. The package includes a number of variants aimed at different applications and user communities. Clawpack has been actively developed as an open source project for over 20 years. The latest major release, Clawpack 5, introduces a number of new features and changes to the code base and a new development model based on GitHub and Git submodules. This article provides a summary of the most significant changes, the rationale behind some of these changes, and a description of our current development model.

PeerJ Computer Science↗

USGS2005

From climate-change spaghetti to climate-change distributions for 21st Century California

The uncertainties associated with climate-change projections for California are unlikely to disappear any time soon, and yet important long-term decisions will be needed to accommodate those potential changes. Projection uncertainties have typically been addressed by analysis of a few scenarios, chosen based on availability or to capture the extreme cases among available projections. However, by focusing on more common projections rather than the most extreme projections (using a new resampling method), new insights into current projections emerge: (1) uncertainties associated with future greenhouse-gas emissions are comparable with the differences among climate models, so that neither source of uncertainties should be neglected or underrepresented; (2) twenty-first century temperature projections spread more, overall, than do precipitation scenarios; (3) projections of extremely wet futures for California are true outliers among current projections; and (4) current projections that are warmest tend, overall, to yield a moderately drier California, while the cooler projections yield a somewhat wetter future. The resampling approach applied in this paper also provides a natural opportunity to objectively incorporate measures of model skill and the likelihoods of various emission scenarios into future assessments.

San Francisco Estuary and Watershed Science↗

USGS2006

Science to support adaptive habitat management: Overton Bottoms North Unit, Big Muddy National Fish and Wildlife Refuge, Missouri

Extensive efforts are underway along the Lower Missouri River to rehabilitate ecosystem functions in the channel and flood plain. Considerable uncertainty inevitably accompanies ecosystem restoration efforts, indicating the benefits of an adaptive management approach in which management actions are treated as experiments, and results provide information to feed back into the management process. The Overton Bottoms North Unit of the Big Muddy National Fish and Wildlife Refuge is a part of the Missouri River Fish and Wildlife Habitat Mitigation Project. The dominant management action at the Overton Bottoms North Unit has been excavation of a side-channel chute to increase hydrologic connectivity and to enhance shallow, slow current-velocity habitat. The side-channel chute also promises to increase hydrologic gradients, and may serve to alter patterns of wetland inundation and vegetation community growth in undesired ways. The U.S. Geological Survey's Central Region Integrated Studies Program (CRISP) undertook interdisciplinary research at the Overton Bottoms North Unit in 2003 to address key areas of scientific uncertainty that were highly relevant to ongoing adaptive management of the site, and to the design of similar rehabilitation projects on the Lower Missouri River. This volume presents chapters documenting the surficial geologic, topographic, surface-water, and ground-water framework of the Overton Bottoms North Unit. Retrospective analysis of vegetation community trends over the last 10 years is used to evaluate vegetation responses to reconnection of the Overton Bottoms North Unit to the river channel. Quasi-experimental analysis of cottonwood growth rate variation along hydrologic gradients is used to evaluate sensitivity of terrestrial vegetation to development of aquatic habitats. The integrated, landscape-specific understanding derived from these studies illustrates the value of scientific information in design and management of rehabilitation projects.

Missouri↗

USGS2012

The macroecology of sustainability

The discipline of sustainability science has emerged in response to concerns of natural and social scientists, policymakers, and lay people about whether the Earth can continue to support human population growth and economic prosperity. Yet, sustainability science has developed largely independently from and with little reference to key ecological principles that govern life on Earth. A macroecological perspective highlights three principles that should be integral to sustainability science: 1) physical conservation laws govern the flows of energy and materials between human systems and the environment, 2) smaller systems are connected by these flows to larger systems in which they are embedded, and 3) global constraints ultimately limit flows at smaller scales. Over the past few decades, decreasing per capita rates of consumption of petroleum, phosphate, agricultural land, fresh water, fish, and wood indicate that the growing human population has surpassed the capacity of the Earth to supply enough of these essential resources to sustain even the current population and level of socioeconomic development.

PLoS Biology↗

USGS2021

Groundwater dynamics at Kīlauea Volcano and vicinity, Hawaiʻi

Kīlauea Volcano, on the Island of Hawaiʻi, is surrounded and permeated by active groundwater systems that interact dynamically with the volcanic system. A generalized conceptual model of Hawaiian hydrogeology includes high-level dike-impounded groundwater, very permeable perched and basal aquifers, and a transition (mixing) zone between freshwater and saltwater. Most high-level groundwater is associated with the low-permeability intrusive complexes that underlie volcanic rift zones and calderas and also act to compartmentalize the groundwater system. Hydrogeologic studies of Kīlauea in recent decades, accompanied by deep research drilling, have shown that high-level groundwater is more widespread than once understood, that permeability decreases dramatically at depth, particularly in rift zones, and that freshwater can occur at depths of as much as several kilometers below the local water table. Copious groundwater recharge causes near-surface conductive heat flow to be near zero over much of Kīlauea. Approximately 95 percent of groundwater discharge occurs offshore, accompanied by approximately 99 percent of the approximately 6,000 megawatts of heat supplied by magmatic intrusion. Here, we summarize current understanding of the groundwater system of Kīlauea Volcano and describe transient changes during the decade or more preceding the 2018 eruption sequence. The changes in groundwater chemistry and thermal structure beneath Kīlauea summit hold implications for volcanic-volatile transport and the potential for explosive volcanism. Between 2008 and 2018, the magma conduit beneath the lava lake likely created an adjacent zone of very hot rock that significantly delayed liquid groundwater inflow to the draining magma conduit. Sulfate concentrations in groundwater beneath Kīlauea summit, sampled at the National Science Foundation-funded drill hole 1.5 kilometers south-southwest of the lava lake, declined substantially between 2010 and present. This decline likely reflects, at least in part, the decreased effectiveness of volatile condensation and solution into groundwater (scrubbing). The vent opening in 2008 presumably focused volatile flux into the vicinity of the vent, and progressive drying of the surroundings further restricted interaction with the groundwater system. The decrease in sulfate concentrations in the drill hole between 2010 and 2018 likely reflects decreased effectiveness of scrubbing.

Hawaii↗

USGS2025

From fences to roads: Changes in barrier behaviour of Mongolian gazelle across different types of linear infrastructure in Mongolia

Poorly designed linear infrastructure can reduce habitat connectivity and be major barriers for migratory wildlife. An important start at effective mitigation is understanding how individuals respond when barriers are encountered. This can be done via comparison of fine- and broad-scale behavioural responses to various anthropogenic barrier types. We classified fine-scale responses of 62 Mongolian gazelles ( Procapra gutturosa ) across different barrier types, seasons and times of day. We also investigated interactions at a broader scale by measuring the length of linear infrastructure traced, interaction duration and crossing success rate. We learned that gazelle behaviour varied according to barrier permeability, and that fences were major obstacles. Gazelles exhibited similar bouncing behaviour when confronted with paved roads as with fences, suggesting paved roads can act as semi-permeable barriers during high traffic volume. Broad-scale movement patterns revealed gazelles travelled considerable distances along fences—averaging 40.2 km, and up to 211.6 km—before moving away or crossing. Long-distance tracing movements can help identify areas with the strongest barrier effect and guide mitigation measures for current and future linear infrastructure. Designing infrastructure and implementing conservation strategies for ungulates in steppe ecosystems will benefit from taking into account behavioural responses at both fine and broad scales.

Proceedings of the Royal Society B: Biological Sci↗

USGS1974

Development of the Circum-Antarctic Current

Deep-sea drilling in the Southern Ocean south of Australia and New Zealand shows that the Circum-Antarctic Current developed about 30 million years ago in the middle to late Oligocene when final separation occurred between Antarctica and the continental South Tasman Rise. Australia had commenced drifting northward from Antarctica 20 million years before this.

Science↗

USGS2005

Advanced Very High Resolution Radiometer Normalized Difference Vegetation Index Composites

The Advanced Very High Resolution Radiometer (AVHRR) is a broad-band scanner with four to six bands, depending on the model. The AVHRR senses in the visible, near-, middle-, and thermal- infrared portions of the electromagnetic spectrum. This sensor is carried on a series of National Oceanic and Atmospheric Administration (NOAA) Polar Orbiting Environmental Satellites (POES), beginning with the Television InfraRed Observation Satellite (TIROS-N) in 1978. Since 1989, the United States Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS) has been mapping the vegetation condition of the United States and Alaska using satellite information from the AVHRR sensor. The vegetation condition composites, more commonly called greenness maps, are produced every week using the latest information on the growth and condition of the vegetation. One of the most important aspects of USGS greenness mapping is the historical archive of information dating back to 1989. This historical stretch of information has allowed the USGS to determine a 'normal' vegetation condition. As a result, it is possible to compare the current week's vegetation condition with normal vegetation conditions. An above normal condition could indicate wetter or warmer than normal conditions, while a below normal condition could indicate colder or dryer than normal conditions. The interpretation of departure from normal will depend on the season and geography of a region.

Fact Sheet↗

USGS2005

Visitor and community survey results for Kilauea Point National Wildlife Refuge and Lighthouse: Completion report

The U.S. Fish and Wildlife Service (USFWS) and the Central Federal Lands Highway Division of the Federal Highway Administration, U.S. Department of Transportation are currently pursuing the planning and potential design of an alternative transportation system (ATS) for Kilauea Point National Wildlife Refuge (Refuge or Kilauea Point NWR). The USFWS and CFLHD seek an alternative transportation solution that provides the highest quality visitor experience and is sensitive to biological and cultural resources and the needs of the local community. In planning the alternative transportation system, managers need to consider how an ATS would change factors such as visitor access, visitor experience, visitor willingness to pay, and visitor net economic benefits. The Policy Analysis and Science Assistance branch (PASA) at the U.S. Geological Survey Fort Collins Science Center is dedicated to studying relations between humans and the environment. The objective of PASA is to conduct studies to understand how humans are affected by environmental management decisions and how human activities impact use and conservation of natural resources.

Hawaii↗