Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Nature Methods”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 811 records · Page 45Linked to original sources

Historical sediment mercury deposition for select South Dakota, USA, lakes: implications for watershed transport and flooding

Purpose Select South Dakota, USA water bodies, including both natural lakes and man-made impoundments, were sampled and analyzed to assess mercury (Hg) dynamics and historical patterns of total Hg deposition. Materials and methods Sediment cores were collected from seven South Dakota lakes. Mercury concentrations and flux profiles were determined using lead ( 210 Pb) dating and sedimentation rates. Results and discussion Most upper lake sediments contained variable heavy metal concentrations, but became more consistent with depth and age. Five of the seven lakes exhibited Hg accumulation fluxes that peaked between 1920 and 1960, while the remaining two lakes exhibited recent (1995–2009) Hg flux spikes. Historical sediment accumulation rates and Hg flux profiles demonstrate similar peak and stabilized values. Mercury in the sampled South Dakota lakes appears to emanate from watershed transport due to erosion from agricultural land use common to the Northern Great Plains. Conclusions For sampled South Dakota lakes, watershed inputs are more significant sources of Hg than atmospheric deposition.

South Dakota↗

Using radar imagery for crop discrimination: a statistical and conditional probability study

A number of the constraints with which remote sensing must contend in crop studies are outlined. They include sensor, identification accuracy, and congruencing constraints; the nature of the answers demanded of the sensor system; and the complex temporal variances of crops in large areas. Attention is then focused on several methods which may be used in the statistical analysis of multidimensional remote sensing data. Crop discrimination for radar K-band imagery is investigated by three methods. The first one uses a Bayes decision rule, the second a nearest-neighbor spatial conditional probability approach, and the third the standard statistical techniques of cluster analysis and principal axes representation. Results indicate that crop type and percent of cover significantly affect the strength of the radar return signal. Sugar beets, corn, and very bare ground are easily distinguishable, sorghum, alfalfa, and young wheat are harder to distinguish. Distinguishability will be improved if the imagery is examined in time sequence so that changes between times of planning, maturation, and harvest provide additional discriminant tools. A comparison between radar and photography indicates that radar performed surprisingly well in crop discrimination in western Kansas and warrants further study.

Remote Sensing of Environment↗

High-precision measurement of variations in calcium isotope ratios in urine by multiple collector inductively coupled plasma mass spectrometry

We describe a new chemical separation method to isolate Ca from other matrix elements in biological samples, developed with the long-term goal of making high-precision measurement of natural stable Ca isotope variations a clinically applicable tool to assess bone mineral balance. A new two-column procedure utilizing HBr achieves the purity required to accurately and precisely measure two Ca isotope ratios ( 44 Ca/ 42 Ca and 44 Ca/ 43 Ca) on a Neptune multiple collector inductively coupled plasma mass spectrometer (MC-ICPMS) in urine. Purification requirements for Sr, Ti, and K (Ca/Sr > 10000; Ca/Ti > 10000000; and Ca/K > 10) were determined by addition of these elements to Ca standards of known isotopic composition. Accuracy was determined by (1) comparing Ca isotope results for samples and standards to published data obtained using thermal ionization mass spectrometry (TIMS), (2) adding a Ca standard of known isotopic composition to a urine sample purified of Ca, and (3) analyzing mixtures of urine samples and standards in varying proportions. The accuracy and precision of δ 44/42 Ca measurements of purified samples containing 25 μg of Ca can be determined with typical errors less than ±0.2‰ (2σ).

Analytical Chemistry↗

Skinks of Oceania, New Guinea, and Eastern Wallacea: An underexplored biodiversity hotspot

Context: Skinks comprise the dominant component of the terrestrial vertebrate fauna in Oceania, New Guinea, and Eastern Wallacea (ONGEW). However, knowledge of their diversity is incomplete, and their conservation needs are poorly understood. Aims: To explore the diversity and threat status of the skinks of ONGEW and identify knowledge gaps and conservation needs. Methods: We compiled a list of all skink species occurring in the region and their threat categories designated by the International Union for Conservation of Nature. We used available genetic sequences deposited in the National Center for Biotechnology Information’s GenBank to generate a phylogeny of the region’s skinks. We then assessed their diversity within geographical sub-divisions and compared to other reptile taxa in the region. Key results: Approximately 300 species of skinks occur in ONGEW, making it the second largest global hotspot of skink diversity following Australia. Many phylogenetic relationships remain unresolved, and many species and genera are in need of taxonomic revision. One in five species are threatened with extinction, a higher proportion than almost all reptile families in the region. Conclusions: ONGEW contain a large proportion of global skink diversity on <1% of the Earth’s landmass. Many are endemic and face risks such as habitat loss and invasive predators. Yet, little is known about them, and many species require taxonomic revision and threat level re-assessment. Implications: The skinks of ONGEW are a diverse yet underexplored group of terrestrial vertebrates, with many species likely facing extreme risks in the near future. Further research is needed to understand the threats they face and how to protect them.

Pacific Conservation Biology↗

Estimating occupancy and abundance using aerial images with imperfect detection

Species distribution and abundance are critical population characteristics for efficient management, conservation, and ecological insight. Point process models are a powerful tool for modelling distribution and abundance, and can incorporate many data types, including count data, presence-absence data, and presence-only data. Aerial photographic images are a natural tool for collecting data to fit point process models, but aerial images do not always capture all animals that are present at a site. Methods for estimating detection probability for aerial surveys usually include collecting auxiliary data to estimate the proportion of time animals are available to be detected. We developed an approach for fitting point process models using an N -mixture model framework to estimate detection probability for aerial occupancy and abundance surveys. Our method uses multiple aerial images taken of animals at the same spatial location to provide temporal replication of sample sites. The intersection of the images provide multiple counts of individuals at different times. We examined this approach using both simulated and real data of sea otters ( Enhydra lutris kenyoni ) in Glacier Bay National Park, southeastern Alaska. Using our proposed methods, we estimated detection probability of sea otters to be 0.76, the same as visual aerial surveys that have been used in the past. Further, simulations demonstrated that our approach is a promising tool for estimating occupancy, abundance, and detection probability from aerial photographic surveys. Our methods can be readily extended to data collected using unmanned aerial vehicles, as technology and regulations permit. The generality of our methods for other aerial surveys depends on how well surveys can be designed to meet the assumptions of N -mixture models.

Methods in Ecology and Evolution↗

Mark-recapture and mark-resight methods for estimating abundance with remote cameras: a carnivore case study

Abundance estimation of carnivore populations is difficult and has prompted the use of non-invasive detection methods, such as remotely-triggered cameras, to collect data. To analyze photo data, studies focusing on carnivores with unique pelage patterns have utilized a mark-recapture framework and studies of carnivores without unique pelage patterns have used a mark-resight framework. We compared mark-resight and mark-recapture estimation methods to estimate bobcat ( Lynx rufus ) population sizes, which motivated the development of a new "hybrid" mark-resight model as an alternative to traditional methods. We deployed a sampling grid of 30 cameras throughout the urban southern California study area. Additionally, we physically captured and marked a subset of the bobcat population with GPS telemetry collars. Since we could identify individual bobcats with photos of unique pelage patterns and a subset of the population was physically marked, we were able to use traditional mark-recapture and mark-resight methods, as well as the new &ldquo;hybrid&rdquo; mark-resight model we developed to estimate bobcat abundance. We recorded 109 bobcat photos during 4,669 camera nights and physically marked 27 bobcats with GPS telemetry collars. Abundance estimates produced by the traditional mark-recapture, traditional mark-resight, and &ldquo;hybrid&rdquo; mark-resight methods were similar, however precision differed depending on the models used. Traditional mark-recapture and mark-resight estimates were relatively imprecise with percent confidence interval lengths exceeding 100% of point estimates. Hybrid mark-resight models produced better precision with percent confidence intervals not exceeding 57%. The increased precision of the hybrid mark-resight method stems from utilizing the complete encounter histories of physically marked individuals (including those never detected by a camera trap) and the encounter histories of naturally marked individuals detected at camera traps. This new estimator may be particularly useful for estimating abundance of uniquely identifiable species that are difficult to sample using camera traps alone.

California↗

River Channel Topographic Surveys Collected Prior to and Following Elevated Flows in the Central Platte River, Spring 2008

Rainfall in central Nebraska in late May and early June 2008 elevated streamflows in the central Platte River. Topographic surveys collected along geomorphic monitoring transects prior to these flows (May 2007, July 2007, and March 2008) were repeated in mid-June 2008. These surveys provide characterization of river topography that could be used (1) to infer changes in channel morphology that occurred as a result of this flow event, and (2) to aid in the determination of the effect of managed and natural flow events on habitats for endangered and threatened species in the Platte River basin. The primary purposes of this report are to summarize the methods of data collection, processing, and editing and to make the data described in the report publicly available.

Data Series↗

A Study of Natural and Restored Wetland Hydrology

The U.S. Geological Survey and the U.S. Environmental Protection Agency are jointly studying the hydrology of a long-existing natural wetland and a recently restored wetland in the Kankakee River Valley in northwestern Indiana. In characterizing the two wetlands, project investigators are testing innovative methods to identify the analytical tools best suited for evaluating the success of wetland restoration. Investigators also are examining and comparing the relations between hydrology and restored wetland vegetation.

Indiana↗

Estimated depth to water, North Carolina

This web site contains the Federal Geographic Data Committee-compliant metadata (documentation) for digital data produced for the North Carolina, Department of Environment and Natural Resources, Public Water Supply Section, Source Water Assessment Program. The metadata are for 11 individual Geographic Information System data sets. An overlay and indexing method was used with the data to derive a rating for unsaturated zone and watershed characteristics for use by the State of North Carolina in assessing more than 11,000 public water-supply wells and approximately 245 public surface-water intakes for susceptibility to contamination. For ground-water supplies, the digital data sets used in the assessment included unsaturated zone rating, vertical series hydraulic conductance, land-surface slope, and land cover. For assessment of public surface-water intakes, the data sets included watershed characteristics rating, average annual precipitation, land-surface slope, land cover, and ground-water contribution. Documentation for the land-use data set applies to both the unsaturated zone and watershed characteristics ratings. Documentation for the estimated depth-to-water map used in the calculation of the vertical series hydraulic conductance also is included.

North Carolina↗

Ground-water contribution classes to characterize watersheds in North Carolina

This web site contains the Federal Geographic Data Committee-compliant metadata (documentation) for digital data produced for the North Carolina, Department of Environment and Natural Resources, Public Water Supply Section, Source Water Assessment Program. The metadata are for 11 individual Geographic Information System data sets. An overlay and indexing method was used with the data to derive a rating for unsaturated zone and watershed characteristics for use by the State of North Carolina in assessing more than 11,000 public water-supply wells and approximately 245 public surface-water intakes for susceptibility to contamination. For ground-water supplies, the digital data sets used in the assessment included unsaturated zone rating, vertical series hydraulic conductance, land-surface slope, and land cover. For assessment of public surface-water intakes, the data sets included watershed characteristics rating, average annual precipitation, land-surface slope, land cover, and ground-water contribution. Documentation for the land-use data set applies to both the unsaturated zone and watershed characteristics ratings. Documentation for the estimated depth-to-water map used in the calculation of the vertical series hydraulic conductance also is included.

North Carolina↗

Unsaturated zone characteristics rating for North Carolina

This web site contains the Federal Geographic Data Committee-compliant metadata (documentation) for digital data produced for the North Carolina, Department of Environment and Natural Resources, Public Water Supply Section, Source Water Assessment Program. The metadata are for 11 individual Geographic Information System data sets. An overlay and indexing method was used with the data to derive a rating for unsaturated zone and watershed characteristics for use by the State of North Carolina in assessing more than 11,000 public water-supply wells and approximately 245 public surface-water intakes for susceptibility to contamination. For ground-water supplies, the digital data sets used in the assessment included unsaturated zone rating, vertical series hydraulic conductance, land-surface slope, and land cover. For assessment of public surface-water intakes, the data sets included watershed characteristics rating, average annual precipitation, land-surface slope, land cover, and ground-water contribution. Documentation for the land-use data set applies to both the unsaturated zone and watershed characteristics ratings. Documentation for the estimated depth-to-water map used in the calculation of the vertical series hydraulic conductance also is included.

North Carolina↗

Watershed characteristics rating for North Carolina

This web site contains the Federal Geographic Data Committee-compliant metadata (documentation) for digital data produced for the North Carolina, Department of Environment and Natural Resources, Public Water Supply Section, Source Water Assessment Program. The metadata are for 11 individual Geographic Information System data sets. An overlay and indexing method was used with the data to derive a rating for unsaturated zone and watershed characteristics for use by the State of North Carolina in assessing more than 11,000 public water-supply wells and approximately 245 public surface-water intakes for susceptibility to contamination. For ground-water supplies, the digital data sets used in the assessment included unsaturated zone rating, vertical series hydraulic conductance, land-surface slope, and land cover. For assessment of public surface-water intakes, the data sets included watershed characteristics rating, average annual precipitation, land-surface slope, land cover, and ground-water contribution. Documentation for the land-use data set applies to both the unsaturated zone and watershed characteristics ratings. Documentation for the estimated depth-to-water map used in the calculation of the vertical series hydraulic conductance also is included.

North Carolina↗

Land-cover classes to characterize the unsaturated zone in North Carolina

This web site contains the Federal Geographic Data Committee-compliant metadata (documentation) for digital data produced for the North Carolina, Department of Environment and Natural Resources, Public Water Supply Section, Source Water Assessment Program. The metadata are for 11 individual Geographic Information System data sets. An overlay and indexing method was used with the data to derive a rating for unsaturated zone and watershed characteristics for use by the State of North Carolina in assessing more than 11,000 public water-supply wells and approximately 245 public surface-water intakes for susceptibility to contamination. For ground-water supplies, the digital data sets used in the assessment included unsaturated zone rating, vertical series hydraulic conductance, land-surface slope, and land cover. For assessment of public surface-water intakes, the data sets included watershed characteristics rating, average annual precipitation, land-surface slope, land cover, and ground-water contribution. Documentation for the land-use data set applies to both the unsaturated zone and watershed characteristics ratings. Documentation for the estimated depth-to-water map used in the calculation of the vertical series hydraulic conductance also is included.

North Carolina↗

Land-Cover Classes to Characterize watersheds in North Carolina

This web site contains the Federal Geographic Data Committee-compliant metadata (documentation) for digital data produced for the North Carolina, Department of Environment and Natural Resources, Public Water Supply Section, Source Water Assessment Program. The metadata are for 11 individual Geographic Information System data sets. An overlay and indexing method was used with the data to derive a rating for unsaturated zone and watershed characteristics for use by the State of North Carolina in assessing more than 11,000 public water-supply wells and approximately 245 public surface-water intakes for susceptibility to contamination. For ground-water supplies, the digital data sets used in the assessment included unsaturated zone rating, vertical series hydraulic conductance, land-surface slope, and land cover. For assessment of public surface-water intakes, the data sets included watershed characteristics rating, average annual precipitation, land-surface slope, land cover, and ground-water contribution. Documentation for the land-use data set applies to both the unsaturated zone and watershed characteristics ratings. Documentation for the estimated depth-to-water map used in the calculation of the vertical series hydraulic conductance also is included.

North Carolina↗

Land-use classes to characterize watersheds and unsaturated zones in North Carolina

This web site contains the Federal Geographic Data Committee-compliant metadata (documentation) for digital data produced for the North Carolina, Department of Environment and Natural Resources, Public Water Supply Section, Source Water Assessment Program. The metadata are for 11 individual Geographic Information System data sets. An overlay and indexing method was used with the data to derive a rating for unsaturated zone and watershed characteristics for use by the State of North Carolina in assessing more than 11,000 public water-supply wells and approximately 245 public surface-water intakes for susceptibility to contamination. For ground-water supplies, the digital data sets used in the assessment included unsaturated zone rating, vertical series hydraulic conductance, land-surface slope, and land cover. For assessment of public surface-water intakes, the data sets included watershed characteristics rating, average annual precipitation, land-surface slope, land cover, and ground-water contribution. Documentation for the land-use data set applies to both the unsaturated zone and watershed characteristics ratings. Documentation for the estimated depth-to-water map used in the calculation of the vertical series hydraulic conductance also is included.

North Carolina↗

Percent-slope classes to characterize the unsaturated zone in North Carolina

This web site contains the Federal Geographic Data Committee-compliant metadata (documentation) for digital data produced for the North Carolina, Department of Environment and Natural Resources, Public Water Supply Section, Source Water Assessment Program. The metadata are for 11 individual Geographic Information System data sets. An overlay and indexing method was used with the data to derive a rating for unsaturated zone and watershed characteristics for use by the State of North Carolina in assessing more than 11,000 public water-supply wells and approximately 245 public surface-water intakes for susceptibility to contamination. For ground-water supplies, the digital data sets used in the assessment included unsaturated zone rating, vertical series hydraulic conductance, land-surface slope, and land cover. For assessment of public surface-water intakes, the data sets included watershed characteristics rating, average annual precipitation, land-surface slope, land cover, and ground-water contribution. Documentation for the land-use data set applies to both the unsaturated zone and watershed characteristics ratings. Documentation for the estimated depth-to-water map used in the calculation of the vertical series hydraulic conductance also is included.

North Carolina↗

Percent-slope classes to characterize watersheds in North Carolina

This web site contains the Federal Geographic Data Committee-compliant metadata (documentation) for digital data produced for the North Carolina, Department of Environment and Natural Resources, Public Water Supply Section, Source Water Assessment Program. The metadata are for 11 individual Geographic Information System data sets. An overlay and indexing method was used with the data to derive a rating for unsaturated zone and watershed characteristics for use by the State of North Carolina in assessing more than 11,000 public water-supply wells and approximately 245 public surface-water intakes for susceptibility to contamination. For ground-water supplies, the digital data sets used in the assessment included unsaturated zone rating, vertical series hydraulic conductance, land-surface slope, and land cover. For assessment of public surface-water intakes, the data sets included watershed characteristics rating, average annual precipitation, land-surface slope, land cover, and ground-water contribution. Documentation for the land-use data set applies to both the unsaturated zone and watershed characteristics ratings. Documentation for the estimated depth-to-water map used in the calculation of the vertical series hydraulic conductance also is included.

North Carolina↗

A practical, low-noise coil system for magnetotellurics

Magnetotellurics is a geophysical technique which was developed by Cagnaird (1953) and Tikhonov (1950) and later refined by other scientists worldwide. The technique is a method of electromagnetic sounding of the Earth and is based upon the skin depth effect in conductive media. The electric and magnetic fields arising from natural sources are measured at the surface of the earth over broad frequency bands. An excellent review of the technique is provided in the paper by Vozoff (1972). The sources of the natural fields are found in two basic mechanisms. At frequencies above a few hertz, most of the energy arises from lightning in thunderstorm belts around the equatorial regions. This energy is propagated in a wave-guide formed by the earthionospheric cavity. Energy levels are higher at fundamental modes for this cavity, but sufficient energy exists over most of the audio range to be useful for sounding at these frequencies, in which case the technique is generally referred to as audio-magnetotellurics or AMT. At frequencies lower than audio, and in general below 1 Hz, the source of naturally occuring electromagnetic energy is found in ionospheric currents. Current systems flowing in the ionosphere generate EM waves which can be used in sounding of the earth. These fields generate a relatively complete spectrum of electromagnetic energy that extends from around 1 Hz to periods of one day. Figure 1 shows an amplitude spectrum characteristic of both the ionospheric and lightning sources, covering a frequency range from 0.0001 Hz to 1000 Hz. It can be seen that there is a minimum in signal levels that occurs at about 1 Hz, in the gap between the two sources, and that signal level increases with a decrease in frequency.

Open-File Report↗