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At least 811 records · Page 45Linked to original sources

USGS2011

Elwha River dam removal-Rebirth of a river

After years of planning for the largest project of its kind, the Department of the Interior will begin removal of two dams on the Elwha River, Washington, in September 2011. For nearly 100 years, the Elwha and Glines Canyon Dams have disrupted natural processes, trapping sediment in the reservoirs and blocking fish migrations, which changed the ecology of the river downstream of the dams. All five Pacific salmon species and steelhead-historically present in large numbers-are locally extirpated or persist in critically low numbers. Upstream of the dams, more than 145 kilometers of pristine habitat, protected inside Olympic National Park, awaits the return of salmon populations. As the dams are removed during a 2-3 year project, some of the 19 million cubic meters of entrapped sediment will be carried downstream by the river in the largest controlled release of sediment into a river and marine waters in history. Understanding the changes to the river and coastal habitats, the fate of sediments, and the salmon recolonization of the Elwha River wilderness will provide useful information for society as future dam removals are considered.

Fact Sheet↗

USGS2024

Challenges of implementing a multi-agency monitoring and adaptive management strategy for federally threatened Chinook salmon and steelhead trout during and after dam removal in the Elwha River

Adaptive management, a process of planning, implementing, and evaluating management strategies, is often recommended for monitoring ecological systems. However, few examples of successful implementation and retrospective case studies exist. We provide a case study of adaptively managing hatchery-assisted protection and recovery for Chinook salmon ( Oncorhynchus tshawytscha ) and winter steelhead trout ( O. mykiss ) during and after the removal of two large mainstem dams in the Elwha River, WA. We summarize key aspects of the monitoring and adaptive management plan over the last decade and highlight successes, challenges, and complications during the plan’s implementation. The Elwha Monitoring and Adaptive Management Guidelines included a trigger-based system for moving through four phases of recovery that included preservation, recolonization, local adaptation, and viable natural population, each with differing levels of hatchery production as the management actions. The monitoring component of the plan has been very successful, providing critical data to guide management actions that otherwise may not have occurred and, opportunistically, provided data for other native species in the Elwha River. Implementing adaptive management provided mixed results and was at times hindered by divergent management goals among project partners, the inflexibility of the Endangered Species Act regulatory requirements as implemented for this project, and conflicting information among guidance documents. We learned that some metrics and triggers in the plan were ill-defined or too difficult to measure in the field. In some cases, the performance indicators and/or triggers were successfully modified to incorporate what was learned; however, in other cases, we were unable to revise the values due to differing opinions among partners. The ability to reach consensus on revised triggers appeared to be influenced by the recovery trajectory of the species involved. The implemented adaptive management strategy resulted in substantial collaboration and learning, which resulted in revised management strategies, but was imperfect. Sufficient long-term funding is necessary to implement a well-designed monitoring program and could benefit from including a defined leadership position to shepherd and facilitate a multi-stakeholder adaptive management program. Additionally, incorporating adaptive management into legally binding conditions under the Endangered Species Act is feasible, but requires substantial pre-planning in close coordination with regulatory agencies.

Washington↗

USGS2011

Exploring sensitivity of a multistate occupancy model to inform management decisions

1. Dynamic occupancy models are often used to investigate questions regarding the processes that influence patch occupancy and are prominent in the fields of population and community ecology and conservation biology. Recently, multistate occupancy models have been developed to investigate dynamic systems involving more than one occupied state, including reproductive states, relative abundance states and joint habitat‐occupancy states. Here we investigate the sensitivities of the equilibrium‐state distribution of multistate occupancy models to changes in transition rates. 2. We develop equilibrium occupancy expressions and their associated sensitivity metrics for dynamic multistate occupancy models. To illustrate our approach, we use two examples that represent common multistate occupancy systems. The first example involves a three‐state dynamic model involving occupied states with and without successful reproduction (California spotted owl Strix occidentalis occidentalis ), and the second involves a novel way of using a multistate occupancy approach to accommodate second‐order Markov processes (wood frog Lithobates sylvatica breeding and metamorphosis). 3. In many ways, multistate sensitivity metrics behave in similar ways as standard occupancy sensitivities. When equilibrium occupancy rates are low, sensitivity to parameters related to colonisation is high, while sensitivity to persistence parameters is greater when equilibrium occupancy rates are high. Sensitivities can also provide guidance for managers when estimates of transition probabilities are not available. 4. Synthesis and applications. Multistate models provide practitioners a flexible framework to define multiple, distinct occupied states and the ability to choose which state, or combination of states, is most relevant to questions and decisions about their own systems. In addition to standard multistate occupancy models, we provide an example of how a second‐order Markov process can be modified to fit a multistate framework. Assuming the system is near equilibrium, our sensitivity analyses illustrate how to investigate the sensitivity of the system‐specific equilibrium state(s) to changes in transition rates. Because management will typically act on these transition rates, sensitivity analyses can provide valuable information about the potential influence of different actions and when it may be prudent to shift the focus of management among the various transition rates.

Journal of Applied Ecology↗

USGS1992

Water, Energy, and Biogeochemical Budgets (WEBB) program: Data availability and research at the Northern Temperate Lakes site in north-central Wisconsin

More than three thousand kettle lakes, widely dispersed within a mixed temperate forest ecosystem, are predominant features of the Northern Highland area of north-central Wisconsin. A hydrological and biogeochemical investigation of seven of these lakes and their watershed area is currently in progress as part of the Water, Energy, and Biogeochemical Budgets (WEBB) program of the U.S. Geological Survey. The objectives of the overall WEBB program are to: (1) improve understanding of processes controlling water, energy, and biogeochemical fluxes in freshwater systems, the interactions among those processes, and their relations to climatic variables; and (2) improve the capability to predict freshwater, energy, and biogeochemical budgets over a range of spatial and temporal scales. The focus of the WEBB project in Wisconsin is hydrologic research in the Northern Temperate Lakes (NTL) area of the state. Based on the premise that an understanding of hydrologic and biogeochemical cycles in the watershed is predicated on a thorough understanding of the individual components that control the water flow, the project involves a detailed study of the hydrologic budget, including the roles of rainfall, streamflow, ground water, and flow in the unsaturated zone. It also involves investigation of ground-water/ surface-water interactions. The objectives of the Northern Temperate Lakes WEBB project are to: (1) describe processes controlling water and solute fluxes in the NTL watersheds; (2) examine interactions among those processes and their relations to climatic variables; and (3) improve the capability to predict changes in water and solute fluxes for a range of spatial and temporal scales. A variety of procedures will be used to address the objectives of the project including: installation of piezometers, lysimeters, stream-gaging sites, precipitation collectors, climate-monitoring instruments; analysis of transport of nutrients and other solutes through the system; analysis of changes in isotopic composition of water; and temperature profiling. The implementation of these procedures is described in this report. The NTL-WEBB study area includes seven lakes that are also the site of a Long-Term Ecological Research (LTER) project, sponsored by the National Science Foundation. This project incorporates diverse research investigations conducted by faculty and research associates of the University of Wisconsin-Madison. The research orientation of NTL-LTER is principally toward aquatic ecology and geochemistry of the lakes. The WEBB research plan, with its emphasis on hydrologic processes in the lake watersheds, is designed to complement and enhance the LTER work.

Wisconsin↗

USGS2017

States and rates: Complementary approaches to developing flow‐ecology relationships

In recognition of the influence of flow on riverine habitats and organisms, stream ecologists have devoted considerable effort to the development of quantitative predictive relationships describing ecological responses to flow variability, i.e. flow‐ecology relationships. Methods used to generate flow‐ecology relationships can be thought of as a continuum bookended by pure states approaches on one end and by rates approaches on the other. In pure states approaches, the ecological response is a snapshot of a condition or property (i.e. a state) derived from a single measurement in time. In contrast, ecological responses in rates approaches reflect temporal change (i.e. a rate) and are thus reliant on repeated measurements made over time. Here, we elaborate on the fundamental characteristics of different approaches (pure states, rates and an intermediate approach we call repeated states) for generating flow‐ecology relationships, examine how commonly the different approaches are used in the flow‐ecology literature, conduct an independent analysis to illustrate the different outcomes achieved by applying repeated‐states and rates approaches using a dataset for stream fish diversity in relation to flow magnitude, and identify some of the different ways ecologists are applying rates approaches in flow ecology. Our literature review revealed that repeated‐states approaches (53% of reviewed studies) were used far more commonly than either pure states (19%) or rates (12%) approaches to generate flow‐ecology relationships. The remaining hybrid studies (17%) used both state and rate responses, and thus also relied on repeated measurements over time. Despite frequent collection of data suitable for rates approaches, flow‐ecology relationships have generally been developed using states approaches that relate changes in ecological states to different long‐term average flow conditions, rather than to specific flow sequences over much shorter time intervals. Such flow‐ecology relationships cannot generate temporally specific predictions of ecological responses to changing flow conditions (i.e. the expected change in state following a specific flow sequence), nor can they describe demographic processes underlying observed changes. While there are different scenarios in which a pure or repeated‐states approach would be useful, more frequent use of rates approaches would increase our ability to test flow‐ecology hypotheses and our mechanistic understanding of flow‐ecology relationships.

Freshwater Biology↗

USGS2019

Selecting a landscape model for natural resource management applications

Purpose of Review: Climate change and associated ecological impacts have challenged many conventional, observation-based approaches for predicting ecosystem and landscape responses to natural resource management. Complex spatial ecological models provide powerful, flexible tools which managers and others can use to make inferences about management impacts on future, no-analog landscape conditions. However, land managers who wish to use ecosystem and landscape models for natural resource applications are faced with the difficult task of deciding among many models that differ in important ways. Here, we summarize a process to aid managers in the selection of an appropriate model for natural resource management. Recent Findings: To guide management planning, scientifically credible information on how landscapes will respond to management actions under changing climate is required. Landscape models are increasingly used in a management context to evaluate of impacts of changing climate and interacting stressors on ecosystems and to test effects of alternative management options on desired conditions. However, the wide range of available models makes selection of appropriate and viable models a complex process. Summary: We present a series of preliminary steps to define critical scales of time, space, and ecological organization to guide an experimental design for a modeling project and then list a set of criteria for selecting a landscape or ecological model. Material presented includes the preliminary steps (crafting modeling objective, designing modeling project), organizational concerns (resources available, expertise on hand, timelines), and modeling details (complexity, design, documentation) of model selection.

Current Landscape Ecology Reports↗

USGS2002

Rangeland health attributes and indicators for qualitative assessment

Panels of experts from the Society for Range Management and the National Research Council proposed that status of rangeland ecosystems could be ascertained by evaluating an ecological site's potential to conserve soil resources and by a series of indicators for ecosystem processes and site stability. Using these recommendations as a starting point, we developed a rapid, qualitative method for assessing a moment-in-time status of rangelands. Evaluators rate 17 indicators to assess 3 ecosystem attributes (soil and site stability, hydrologic function, and biotic integrity) for a given location. Indicators include rills, water flow patterns, pedestals and terracettes, bare ground, gullies, wind scour and depositional areas, litter movement, soil resistance to erosion, soil surface loss or degradation, plant composition relative to infiltration, soil compaction, plant functional/structural groups, plant mortality, litter amount, annual production, invasive plants, and reproductive capability. In this paper, we detail the development and evolution of the technique and introduce a modified ecological reference worksheet that documents the expected presence and amount of each indicator on the ecological site. In addition, we review the intended applications for this technique and clarify the differences between assessment and monitoring that lead us to recommend this technique be used for moment-in-time assessments and not be used for temporal monitoring of rangeland status. Lastly, we propose a mechanism for adapting and modifying this technique to reflect improvements in understanding of ecosystem processes. We support the need for quantitative measures for monitoring rangeland health and propose some measures that we believe may address some of the 17 indicators.

Journal of Range Management↗

USGS2016

Models for ecological models: Ocean primary productivity

The ocean accounts for more than 70% of planet Earth's surface, and it processes are critically important to marine and terrestrial life. Ocean ecosystems are strongly dependent on the physical state of the ocean (e.g., transports, mixing, upwelling, runoff, and ice dynamics(. As an example, consider the Coastal Gulf of Alaska (CGOA) region.

CHANCE↗

USGS2015

Global change and conservation triage on National Wildlife Refuges

National Wildlife Refuges (NWRs) in the United States play an important role in the adaptation of social-ecological systems to climate change, land-use change, and other global-change processes. Coastal refuges are already experiencing threats from sea-level rise and other change processes that are largely beyond their ability to influence, while at the same time facing tighter budgets and reduced staff. We engaged in workshops with NWR managers along the U.S. Atlantic coast to understand the problems they face from global-change processes and began a multidisciplinary collaboration to use decision science to help address them. We are applying a values-focused approach to base management decisions on the resource objectives of land managers, as well as those of stakeholders who may benefit from the goods and services produced by a refuge. Two insights that emerged from our workshops were a conspicuous mismatch between the scale at which management can influence outcomes and the scale of environmental processes, and the need to consider objectives related to ecosystem goods and services that traditionally have not been explicitly considered by refuges (e.g., protection from storm surge). The broadening of objectives complicates the decision-making process, but also provides opportunities for collaboration with stakeholders who may have agendas different from those of the refuge, as well as an opportunity for addressing problems across scales. From a practical perspective, we recognized the need to (1) efficiently allocate limited staff time and budgets for short-term management of existing programs and resources under the current refuge design and (2) develop long-term priorities for acquiring or protecting new land/habitat to supplement or replace the existing refuge footprint and thus sustain refuge values as the system evolves over time. Structuring the decision-making problem in this manner facilitated a better understanding of the issues of scale and suggested that a long-term solution will require a significant reassessment of objectives to better reflect the comprehensive values of refuges to society. We discuss some future considerations to integrate these two problems into a single framework by developing novel optimization approaches for dynamic problems that account for uncertainty in future conditions.

Ecology and Society↗

USGS2017

Mercury contamination and stable isotopes reveal variability in foraging ecology of generalist California gulls

Environmental contaminants are a concern for animal health, but contaminant exposure can also be used as a tracer of foraging ecology. In particular, mercury (Hg) concentrations are highly variable among aquatic and terrestrial food webs as a result of habitat- and site-specific biogeochemical processes that produce the bioaccumulative form, methylmercury (MeHg). We used stable isotopes and total Hg (THg) concentrations of a generalist consumer, the California gull ( Larus californicus ), to examine foraging ecology and illustrate the utility of using Hg contamination as an ecological tracer under certain conditions. We identified four main foraging clusters of gulls during pre-breeding and breeding, using a traditional approach based on light stable isotopes. The foraging cluster with the highest δ 15 N and δ 34 S values in gulls (cluster 4) had mean blood THg concentrations 614% (pre-breeding) and 250% (breeding) higher than gulls with the lowest isotope values (cluster 1). Using a traditional approach of stable-isotope mixing models, we showed that breeding birds with a higher proportion of garbage in their diet (cluster 2: 63–82% garbage) corresponded to lower THg concentrations and lower δ 15 N and δ 34 S values. In contrast, gull clusters with higher THg concentrations, which were more enriched in 15 N and 34 S isotopes, consumed a higher proportion of more natural, estuarine prey. δ 34 S values, which change markedly across the terrestrial to marine habitat gradient, were positively correlated with blood THg concentrations in gulls. The linkage we observed between stable isotopes and THg concentrations suggests that Hg contamination can be used as an additional tool for understanding animal foraging across coastal habitat gradients.

Ecological Indicators↗

USGS2015

geoknife: Reproducible web-processing of large gridded datasets

Geoprocessing of large gridded data according to overlap with irregular landscape features is common to many large-scale ecological analyses. The geoknife R package was created to facilitate reproducible analyses of gridded datasets found on the U.S. Geological Survey Geo Data Portal web application or elsewhere, using a web-enabled workflow that eliminates the need to download and store large datasets that are reliably hosted on the Internet. The package provides access to several data subset and summarization algorithms that are available on remote web processing servers. Outputs from geoknife include spatial and temporal data subsets, spatially-averaged time series values filtered by user-specified areas of interest, and categorical coverage fractions for various land-use types.

Ecography↗

USGS2021

Bayesian modeling can facilitate adaptive management in restoration

There is an urgent need for near-term predictions of ecological restoration outcomes despite imperfect knowledge of ecosystems. Restoration outcomes are always uncertain but integrating Bayesian modeling into the process of adaptive management allows researchers and practitioners to explicitly incorporate prior knowledge of ecosystems into future predictions. Although barriers exist, employing qualitative expert knowledge and previous case studies can help narrow the range of uncertainty in forecasts. Software and processes that allow for repeatable methodologies can help bridge the existing gap between theory and application of Bayesian methods in adaptive management.

Restoration Ecology↗

USGS2011

The distance that contaminated aquatic subsidies extend into lake riparian zones

Consumption of emergent aquatic insects by terrestrial invertebrates is a poorly resolved, but potentially important, mechanism of contaminant flux across ecosystem borders leading to contaminant exposure in terrestrial invertivores. We characterized the spatial extent and magnitude of contaminant transfer from aquatic sediments to terrestrial invertebrate predators by examining riparian araneid spiders, terrestrial insects, and emergent aquatic insects for stable isotopes and polychlorinated biphenyls (PCBs, sum of 141 congeners) at Lake Hartwell, (Clemson, South Carolina, USA). PCB concentrations in aquatic insects were orders of magnitude higher than in terrestrial insects. Aquatic insect consumption by spiders (as indicated by δ 13 C and δ 15 N), PCB concentrations in spiders, and aquatic prey availability were greatest at the shoreline and declined inland, while terrestrial prey availability was invariant with distance. These patterns indicate PCB transfer to spiders through consumption of emergent aquatic insects extending to a distance of ∼5 m inland. Measurable, but much lower, PCBs were present in insect predators dominated by social wasps up to 30 m inland. These results illustrate the importance of emergent insects as vectors of contaminant transfer from lake sediments to riparian food webs, and that spiders are key predators in this process.

South Carolina↗

USGS2004

Benefits and impacts of road removal

Road removal is being used to mitigate the physical and ecological impacts of roads and to restore both public and private lands. Although many federal and state agencies and private landowners have created protocols for road removal and priorities for restoration, research has not kept pace with the rate of removal. Some research has been conducted on hydrologic and geomorphic restoration following road removal, but no studies have directly addressed restoring wildlife habitat. Road removal creates a short-term disturbance which may temporarily increase sediment loss. However, long-term monitoring and initial research have shown that road removal reduces chronic erosion and the risk of landslides. We review the hydrologic, geomorphic, and ecological benefits and impacts of three methods of road removal, identify knowledge gaps, and propose questions for future research, which is urgently needed to quantify how effectively road removal restores terrestrial, riparian, and aquatic habitat and other ecosystem processes.

Frontiers in Ecology and the Environment↗

USGS2018

Terrestrial fauna are agents and endpoints in ecosystem restoration following dam removal

Dam removal is an effective and increasingly applied river restoration strategy. This has led to heightened calls for research and monitoring aimed at understanding physical and ecological outcomes following dam removal. While such research programs have increased, roles of terrestrial fauna in the restoration process remain poorly understood, although wildlife and invertebrate fauna are key components of restored ecosystems. Wildlife play reciprocal roles in restoration: they benefit from restored habitats and their activities affect restoration trajectories. Dam removal exposes substrates on former reservoirs and reconnects river corridors, providing new habitat and food resources for terrestrial fauna. Conversely, many wildlife may influence the river restoration process, with both short-term and long-term consequences for community composition, nutrient transfer, and ecosystem function. We assert that considering terrestrial fauna more directly in river restoration research and planning can enhance restoration outcomes. We illustrate these concepts by describing short-term patterns and potential future processes expected from the recent removal of two large dams on the Elwha River in Washington State, the largest dam removal effort ever undertaken. We conclude that an ecosystem-level understanding of restoration following dam removal is critical to fully assessing the impacts and benefits of restoration. This includes measuring the roles and responses of terrestrial fauna to these ecologically and culturally significant restoration projects.

Ecological Restoration↗

USGS2015

The scaling of geographic ranges: implications for species distribution models

Context The geographic ranges of many species are responding to ongoing environmental change. Processes operating at different levels of biological organization, with corresponding spatial extents and grains and temporal rates, interact with the evolving configuration of environmental conditions to determine range dynamics. Objectives To synthesize understanding of scales and scaling, including relevant biological levels of organization, focusing on the processes that mediate species-environment relationships and the models used to make inferences about species distributions. Methods We review concepts related to the scaling of geographic ranges and implications for the most commonly used analytic methods, using simple simulations to illustrate important issues. Results Many processes lead to species distributions being dependent on environmental conditions within sites and within a neighborhood. Studies with large extents and fine grains can cut across several levels of biological organization (individual, within-population, and metapopulation processes) complicating interpretation. Many geographic ranges are not in dynamic equilibrium, but common models used for inference assume equilibrium. Interspecific interactions shape species distributions at multiple scales, and arguments for ignoring species interactions also assume equilibrium. Conclusions There is a need for timely science to inform policy and management decisions; however, we must also strive to provide predictions that best reflect our understanding of ecological systems. Species distributions evolve through time and reflect responses to environmental conditions that are mediated through individual and population processes. Species distribution models that reflect this understanding, and explicitly model dynamics, are likely to give more accurate predictions.

Landscape Ecology↗

USGS2014

Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed

For any enzyme-catalyzed reaction to occur, the corresponding protein-encoding genes and transcripts are necessary prerequisites. Thus, a positive relationship between the abundance of gene or transcripts and corresponding process rates is often assumed. To test this assumption, we conducted a meta-analysis of the relationships between gene and/or transcript abundances and corresponding process rates. We identified 415 studies that quantified the abundance of genes or transcripts for enzymes involved in carbon or nitrogen cycling. However, in only 59 of these manuscripts did the authors report both gene or transcript abundance and rates of the appropriate process. We found that within studies there was a significant but weak positive relationship between gene abundance and the corresponding process. Correlations were not strengthened by accounting for habitat type, differences among genes or reaction products versus reactants, suggesting that other ecological and methodological factors may affect the strength of this relationship. Our findings highlight the need for fundamental research on the factors that control transcription, translation and enzyme function in natural systems to better link genomic and transcriptomic data to ecosystem processes.

The ISME Journal↗

USGS2016

Gravel-bed river floodplains are the ecological nexus of glaciated mountain landscapes

Gravel-bed river floodplains in mountain landscapes disproportionately concentrate diverse habitats, nutrient cycling, productivity of biota, and species interactions. Although stream ecologists know that river channel and floodplain habitats used by aquatic organisms are maintained by hydrologic regimes that mobilize gravel-bed sediments, terrestrial ecologists have largely been unaware of the importance of floodplain structures and processes to the life requirements of a wide variety of species. We provide insight into gravel-bed rivers as the ecological nexus of glaciated mountain landscapes. We show why gravel-bed river floodplains are the primary arena where interactions take place among aquatic, avian, and terrestrial species from microbes to grizzly bears and provide essential connectivity as corridors for movement for both aquatic and terrestrial species. Paradoxically, gravel-bed river floodplains are also disproportionately unprotected where human developments are concentrated. Structural modifications to floodplains such as roads, railways, and housing and hydrologicaltering hydroelectric or water storage dams have severe impacts to floodplain habitat diversity and productivity, restrict local and regional connectivity, and reduce the resilience of both aquatic and terrestrial species, including adaptation to climate change. To be effective, conservation efforts in glaciated mountain landscapes intended to benefit the widest variety of organisms need a paradigm shift that has gravel-bed rivers and their floodplains as the central focus and that prioritizes the maintenance or restoration of the intact structure and processes of these critically important systems throughout their length and breadth.

Science Advances↗