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At least 811 records · Page 45Linked to original sources

Geologic overview of the Mars Science Laboratory rover mission at the Kimberley, Gale crater, Mars

The Mars Science Laboratory (MSL) Curiosity rover completed a detailed investigation at the Kimberley waypoint within Gale crater from sols 571-634 using its full science instrument payload. From orbital images examined early in the Curiosity mission, the Kimberley region had been identified as a high-priority science target based on its clear stratigraphic relationships in a layered sedimentary sequence that had been exposed by differential erosion. Observations of the stratigraphic sequence at the Kimberley made by Curiosity are consistent with deposition in a prograding, fluvio-deltaic system during the late Noachian to early Hesperian, prior to the existence of most of Mt. Sharp. Geochemical and mineralogic analyses suggest that sediment deposition likely took place under cold conditions with relatively low water-to-rock ratios. Based on elevated K2O abundances throughout the Kimberley formation, an alkali feldspar protolith is likely one of several igneous sources from which the sediments were derived. After deposition, the rocks underwent multiple episodes of diagenetic alteration with different aqueous chemistries and redox conditions, as evidenced by the presence of Ca-sulfate veins, Mn-oxide fracture-fills, and erosion-resistant nodules. More recently, the Kimberley has been subject to significant aeolian abrasion and removal of sediments to create modern topography that slopes away from Mt. Sharp, a process that has continued to the present day.

Journal of Geophysical Research E: Planets↗

Simulated juvenile salmon growth and phenology respond to altered thermal regimes and stream network shape

It is generally accepted that climate change will stress coldwater species such as Pacific salmon. However, it is unclear what aspect of altered thermal regimes (e.g., warmer winters, springs, summers, or increased variability) will have the greatest effect, and what role the spatial properties of river networks play. Thermally diverse habitats may afford protection from climate change by providing opportunities for aquatic organisms to find and use habitats with optimal conditions for growth. We hypothesized that climate‐altered thermal regimes will change growth and timing of life history events such as emergence or migration but that changes will be moderated in topologically complex stream networks where opportunities to thermoregulate are more readily available to mobile animals. Because climate change effects on populations are spatially variable and contingent upon physiological optima, assessments of risk must take a spatially explicit approach. We developed a spatially structured individual‐based model for Chinook Salmon ( Oncorhynchus tshawytscha ) in which movement decisions and growth were governed by water temperature and conspecific density. We evaluated growth and phenology (timing of egg emergence and smolting) under a variety of thermal regimes (each having a different minimum, rate of warming, maximum, and variability) and in three network shapes of increasing spatial complexity. Across networks, fish generally grew faster and were capable of smolting earlier in warmer scenarios where water temperatures experienced by fish were closer to optimal; however, growth decreased for some fish. We found that salmon size and smolt date responded more strongly to warmer springs and summers than to warmer winters or increased variability. Fish in the least complex network grew faster and were ready to smolt earlier than fish in the more spatially complex network shapes in the contemporary thermal regime; patterns were similar but less clear in warmer thermal regimes. Our results demonstrate that network topology may influence how fish respond to thermal landscapes, and this information will be useful for incorporating a spatiotemporal context into conservation decisions that promote long‐term viability of salmon in a changing climate.

Ecosphere↗

Evidence for ponding and catastrophic floods in central Valles Marineris, Mars

The Valles Marineris canyon system of Mars is closely related to large flood channels, some of which emerge full born from chaotic terrain in canyon floors. Coprates Chasma, one of the largest Valles Marineris canyons, is connected at its west end to Melas Chasma and on its east end to chaotic terrain-filled Capri and Eos Chasmata. The area from central Melas to Eos Chasmata contains a 1500 km long and about 1 km deep depression in its floor. Despite the large volumes of groundwater that likely discharged from chaotic terrain in this depression, no evidence of related fluvial activity has thus far been reported. We present an analysis of the regional topography which, together with photogeologic interpretation of available imagery, suggests that ponding due to late Hesperian discharge of water possibly produced a lake (mean depth 842 m) spanning parts of the Valles Marineris depression (VMD). Overflow of this lake at its eastern end resulted in delivery of water to downstream chaos regions and outflow channels. Our ponding hypothesis is motivated primarily by the identification of scarp and terrace features which, despite a lateral spread of about 1500 km, have similar elevations. Furthermore, these elevations correspond to the maximum ponding elevation of the region (-3560 m). Simulated ponding in the VMD yields an overflow point at its eastern extremity, in Eos Chasma. The neighborhood of this overflow point contains clear indicators of fluvial erosion in a consistent east-west orientation. ?? 2008 Elsevier Inc.

Icarus↗

Streambank erosion and related geomorphic change in Tuolumne Meadows, Yosemite National Park, California

Landscape change in Tuolumne Meadows, Yosemite National Park, California, was characterized using data derived from four lidar surveys: one airborne survey in 2006 and three terrestrial surveys in 2016, 2017, and 2018. These surveys were used to generate a better quantitative understanding of changes associated with fluvial processes along the reach of the Tuolumne River within Tuolumne Meadows. This research was performed to provide a scientific basis for restoration and management decisions made by the National Park Service in accordance with the Tuolumne Wild and Scenic River Final Comprehensive Management Plan. A total of 15 reaches of the streambanks along the Tuolumne River in Tuolumne Meadows were subject to measurable streambank erosion between 2006 and 2018. In these areas, streambank retreat rates ranged between 0 and 2.7 meters per year (m/yr), recorded as an average retreat distance along the length of changing streambank position, with most retreat rates being less than 0.50 m/yr. The highest streambank retreat rates are associated with a year of high spring streamflow in 2017. Based on the data available, it was concluded that deposition on channel and point bars balances streambank erosion over a period of 12 years along the Tuolumne River in Tuolumne Meadows. As such, the river could be considered to be in a state of dynamic equilibrium during this period; erosion and sedimentation occur in distinct pulses in response to hydrological forcing but it is not clear that there is a trend towards sediment accumulation or removal in Tuolumne Meadows nor is there an obvious trend toward channel widening or narrowing. The existence of visible paleochannels in the meadow are an indication that more dramatic channel planform geometry changes have occurred in Tuolumne Meadows over an undetermined period and may occur again in the future. Geomorphic change rates relate to hydrology; during the study period, the high water in 2017 led to the highest rates of geomorphic change. Land managers should anticipate that floods with discharge rates greater than the peak flow in 2017 may cause more substantial landscape change than what was observed in this study, but erosion resulting from these events may be balanced by channel and point-bar deposition over a period of years.

California↗

Seasonal, spring-neap, and tidal variation in cohesive sediment transport parameters in estuarine shallows

Numerical models for predicting sediment concentrations and transport rely on parameters such as settling velocity and bed erodibility that describe sediment characteristics, yet these parameters are rarely probed directly. We investigated temporal and spatial variation in sediment parameters in the shallows of San Pablo Bay, CA. Flow, turbulence, and suspended sediment data were measured at sites located at 1 and 2 m below mean lower low water (MLLW) from November 2013 through April 2015, supplemented by monthlong periods in 2011, 2012, and 2016. Maximum current velocities were 0.40–0.47 m s -1 at these depths; the strongest currents decreased to 0.27–0.34 m s -1 during neap periods. Winters 2013–2014 and 2014–2015 experienced strong drought conditions, limiting the potential for seasonal impact on sediment conditions during this experiment. Despite this, the more storm‐influenced site showed clear changes during the winter: the roughness parameter decreased from 10 −4 to 10 −5 m, from hydrodynamically rough to smooth conditions, and bed erodibility increased by an order of magnitude. Median settling velocity was 2.05·10 −4 m s -1 ; it varied twofold within a tidal cycle, decreasing as current velocity grew during flood and ebb. This tidal control on floc size affected settling velocity on the spring‐neap timescale, possibly driving a spring‐neap oscillation in erodibility. Our findings highlight variation in sediment dynamics that is commonly ignored in numerical models and the need for field observations to ground truth ongoing modeling efforts.

California↗

Pushing precipitation to the extremes in distributed experiments: Recommendations for simulating wet and dry years

Intensification of the global hydrological cycle, ranging from larger individual precipitation events to more extreme multiyear droughts, has the potential to cause widespread alterations in ecosystem structure and function. With evidence that the incidence of extreme precipitation years (defined statistically from historical precipitation records) is increasing, there is a clear need to identify ecosystems that are most vulnerable to these changes and understand why some ecosystems are more sensitive to extremes than others. To date, opportunistic studies of naturally occurring extreme precipitation years, combined with results from a relatively small number of experiments, have provided limited mechanistic understanding of differences in ecosystem sensitivity, suggesting that new approaches are needed. Coordinated distributed experiments (CDEs) arrayed across multiple ecosystem types and focused on water can enhance our understanding of differential ecosystem sensitivity to precipitation extremes, but there are many design challenges to overcome (e.g., cost, comparability, standardization). Here, we evaluate contemporary experimental approaches for manipulating precipitation under field conditions to inform the design of ‘Drought-Net’, a relatively low-cost CDE that simulates extreme precipitation years. A common method for imposing both dry and wet years is to alter each ambient precipitation event. We endorse this approach for imposing extreme precipitation years because it simultaneously alters other precipitation characteristics (i.e., event size) consistent with natural precipitation patterns. However, we do not advocate applying identical treatment levels at all sites – a common approach to standardization in CDEs. This is because precipitation variability varies >fivefold globally resulting in a wide range of ecosystem-specific thresholds for defining extreme precipitation years. For CDEs focused on precipitation extremes, treatments should be based on each site's past climatic characteristics. This approach, though not often used by ecologists, allows ecological responses to be directly compared across disparate ecosystems and climates, facilitating process-level understanding of ecosystem sensitivity to precipitation extremes.

Global Change Biology↗

Opportunities to improve alignment with the FAIR Principles for U.S. Geological Survey data

In 2016, an interdisciplinary, international group of 53 scientists introduced a framework named “the FAIR Principles” for addressing 21st century scientific data challenges. The FAIR Principles are increasingly used as a guide for producing digital scientific products that are findable, accessible, interoperable, and reusable (FAIR), especially to enable use of such products in automated systems. Data aligned with the FAIR Principles can increase the efficiency of science integration capabilities such as those envisioned for the U.S. Geological Survey (USGS) Earth Monitoring, Analyses, and Projections (EarthMAP) initiative. The FAIR Principles clearly define the characteristics of reusable scientific products, but it is less clear how to facilitate consistency in achieving these characteristics across the Bureau. USGS data are produced by local research projects distributed over more than 100 centers in 7 regions. After data are approved for release, they could be managed in numerous repositories and online data systems. The diversity of USGS data is illustrated by the topical range of the USGS mission areas: Core Science Systems, Ecosystems, Energy and Minerals, Natural Hazards, and Water Resources. In the USGS context, realizing the EarthMAP vision for automated, predictive, integrated science that provides timely and actionable results involves providing knowledge and support services and developing the skills, infrastructure, and culture to enable Bureau-wide implementation of the FAIR Principles. In 2019, the USGS Community for Data Integration funded a project to convene a broadly representative workshop and produce recommendations to enable consistency with the FAIR Principles across the USGS. The workshop, held in Fort Collins, Colorado, in September 2019, brought together 28 participants for 3 days to engage with the FAIR Principles, analyze USGS use cases, and discuss the roles of data producers and managers, data storage and catalogs, value-added services, and policy makers in implementing the FAIR Principles. Workshop participants agreed that scientific reproducibility requires the extension of the FAIR Principles beyond measured data to include physical samples, research methods, software, and tools at the USGS. Workshop discussions focused on how the USGS can implement the FAIR Principles by supporting research teams in creating data, metadata, and other scientific products and also by supporting enterprise systems that maintain and leverage the products’ consistency with the FAIR Principles. The resulting FAIR roadmap of recommendations describes nine proposed interdependent strategies that could be achieved by coordinated actions taken by different parts of the USGS. A proposed early action would be the creation of a coordinating council that includes representatives from the groups engaged in activities consistent with better alignment with the FAIR Principles. The nine proposed strategies, which are presented in more detail in this roadmap report, focus on enabling improvements to individual data products, providing infrastructure, and structuring administrative activities to support an organizational culture that values the FAIR Principles.

Open-File Report↗

Molluscan fauna from core 25B, Whipray Basin, central Florida Bay, Everglades National Park

Molluscan assemblages preserved in an 80-cm core from Whipray Basin in central Florida Bay, Everglades National Park, illustrate changes in the environmental conditions within the basin over the last two centuries. Salinity remained polyhaline to euhaline throughout the time of deposition (1800-1997), with alternating periods of stability and increased fluctuations. Since 1800, a Brachidontes assemblage has characterized Whipray Basin and the dominant faunal components have remained the same in terms of presence and absence of species. However, patterns of dominance and diversity within the Brachidontes assemblage have changed and these changes indicate fluctuations in the environment. The period from 1815 to 1857 was distinguished by an abundance of molluscs dwelling on seagrass and sub-aquatic vegetation. Faunal richness and abundance were high and stable, and epiphytic molluscs flourished. Polyhaline conditions existed, although periods of slightly lower salinities occurred. The period from 1862 to 1894 appears unstable based on fluctuations in molluscan faunal richness, abundance, and dominant species. The epiphytic molluscs experienced significant shifts (? >30%) associated with changes in sub-aquatic vegetation. The changes in epiphytic molluscs from 1871 to 1913 may be indicative of a seagrass die-off. The period from 1899 to 1950 was the most stable section of the core in terms of changes in the molluscan fauna. Faunal richness and abundance reached highs of 31 groups and 726 individuals per sample during this period and epiphytic molluscs were prevalent. Beginning in 1955, faunal groups experienced high amplitude fluctuations in abundance; this pattern continued through the second half of the 20th century. Fluctuating salinity, changes in vegetation, and reduced water quality (low O2, increased nutrients and/or reduced clarity) oxygen supply) have characterized the past 50 years. These changes preceded a seagrass die-off in 1987-88 and may be related to the causes of the die-off. Whether the cause of the changes seen in Whipray Basin is natural or a combination of natural and anthropogenic factors, the amount of change in the molluscan fauna in the last 50 years clearly exceeds the preceding 150 years.

Florida↗

Bedload and river hydraulics - Inferences from the East Fork River, Wyoming

During 1973-79, bedload data were collected in a sophisticated trap on a river of moderate size, the East Fork. The transport rate was measured most days through a full snowmelt season, and the rate was determined separately for eight zones across the channel width. The quantitative data are unique and unlikely to be repeated. Nor need they be, because as a result of this effort a practical bedload sampler was adequately tested against full river measurement. It was shown that bedload moves sporadically and randomly on the river bed. Therefore, transport rate is highly variable in short periods of time. There is also a wide variance from day to day. Yet, different rivers have transport rates, which are functions of discharge, depth, and sediment size, that are clearly distinct. Comparison of computed and measured transport rates indicates that a major problem remains: What grain size is representative of the bedload when there is a wide or heterogeneous particle-size distribution? Size of the bedload in motion may be very different from the size of bed material obtained from samples of the streambed. For general computation, the river channel slope may be averaged, and it may be assumed that water-surface slope does not change materially with changing discharge. Indeed, this generality is correct, in that, compared with depth, velocity, and width, slope is conservative at-a-station. However, in more detail, slope changes importantly with discharge in short reaches of channel, and those changes are very different in pool and riffle. These local changes in slope are not merely an aspect of a detailed longitudinal profile but involve cross-channel as well as down-channel components. The pool and riffle sequence involves not only undulation of bed elevation and bar formation on alternate sides of the channel, but alternation of the zone of superovulation of the water surface, and changing relation of watersurface slope to discharge. These details can be seen only in the full topography of the water surface. Riffles fill during high flow and scour at low flow. Changes in local water-surface slope illustrate this process. Pools are a storage zone for sediment in the low-flow season. Even though large volumes of sediment move, the distance moved is not large—in the East Fork River, sand of size 0.5-1 millimeter moved 650 meters during the 1979 snowmelt runoff season. Bedload transport is greatest over or near bars and not in the deepest part of the channel. Direct observation of the locus of sediment transport indicates that this locus moves from one side of the channel to the other in concert with the occurrence of alternate bars. Separately, data indicate that at constant stream power, transport rate increases as depth decreases.

Wyoming↗

Ground-water movement and nitrate in ground water, East Erda area, Tooele County, Utah, 1997-2000

Nitrate was discovered in ground water in the east Erda area of Tooele County, Utah, in 1994. The U.S. Geological Survey, in cooperation with Tooele County, investigated the ground-water flow system and water quality in the eastern part of Tooele Valley to determine (1) the vertical and horizontal distribution of nitrate, (2) the direction of movement of the nitrate contamination, and (3) the source of the nitrate. The potentiometric surface of the upper part of the basin-fill aquifer indicates that the general direction of ground-water flow is to the northwest, the flow system is complex, and there is a ground-water mound probably associated with springs. The spatial distribution of nitrate reflects the flow system with the nitrate contamination split into a north and south part by the ground-water mound. The distribution of dissolved solids and sulfate in ground water varies spatially. Vertical profiles of nitrate in water from selected wells indicate that nitrate contamination generally is in the upper part of the saturated zone and in some wells has moved downward. Septic systems, mining and smelting, agriculture, and natural sources were considered to be possible sources of nitrate contamination in the east Erda area. Septic systems are not the source of nitrate because water from wells drilled upgradient of all septic systems in the area had elevated nitrate concentrations. Mining and smelting activity are a possible source of nitrate contamination but few data are available to link nitrate contamination with mining sites. Natural and agricultural sources of nitrate are present east of the Erda area but few data are available about these sources. The source(s) of nitrate in the east Erda area could not be clearly delineated in spite of considerable effort and expenditure of resources.

Utah↗

Large wave at Daytona Beach, Florida, explained as a squall-line surge

On a clear calm evening during July 1992, an anomalously large wave, reportedly 6 m high struck the Daytona Beach, Florida area. It is hypothesized that a squall line and associated pressure jump, travelling at the speed of a free gravity wave, coupled resonantly with the sea surface forming the large wave or "squall-line surge'. The wave was forced along the length of the squall line, with the greatest amplitude occurring at the water depth satisfying the resonant condition. -from Authors

Florida↗

Overall results and key findings on the use of UAV visible-color, multispectral, and thermal infrared imagery to map agricultural drainage pipes

Effective and efficient methods are needed to map agricultural subsurface drainage systems. Visible-color (VIS-C), multispectral (MS), and thermal infrared (TIR) imagery obtained by unmanned aerial vehicles (UAVs) may provide a means for determining drainage pipe locations. Aerial surveys using a UAV with VIS-C, MS, and TIR cameras were conducted at 29 agricultural field sites in the Midwest U.S.A. to evaluate the potential of this technology for mapping buried drainage pipes. Overall results show VIS-C imagery detected at least some drain lines at 48 % of the sites (14 out of 29), MS imagery detected drain lines at 59 % of the sites (17 out of 29), and TIR imagery detected drain lines at 69 % of the sites (20 out of 29). Three key findings, listed as follows and emphasized in this article by site examples, were extracted from the overall results. (1) Although TIR generally worked best, there were sites where either VIS-C or MS proved more effective than TIR for mapping subsurface drainage systems. Consequently, to ensure the greatest chance for successfully determining drainage pipe patterns in a field, UAV surveys need to be carried out with all three types of cameras, VIS-C, MS, and TIR. (2) Timing of UAV surveys relative to recent rainfall can sometimes have an important impact on drainage pipe detection results. (3) Linear features representing drain lines and farm field operations can be confused with one another and are often both depicted on site aerial imagery. Knowledge of subsurface drainage system installation and farm field operations can be employed to distinguish linear features representing drain lines from those representing farm field operations. The overall results and extracted key findings from this study clearly indicate that VIS-C, MS, and TIR imagery obtained with UAVs have significant potential for use in mapping agricultural drainage pipe systems.

Indiana, Iowa, Michigan, Ohio↗

Where's the reef: the role of framework in the Holocene

Holocene reef models generally emphasize the role of in-place and interlocking framework in the creation of a rigid structure that rises above its surroundings. By extension, a number of ancient biohermal deposits have been disqualified as “true reefs” owing to their lack of recognizable framework. Fifty-four cores from several eastern Caribbean sites (Fig. 1) clearly demonstrate that in-place and interlocking framework is not common in these reefs that are comprised of varying mixtures of recognizable coral (primary framework), loose sediment/rubble and secondary framework made up mostly of coralgal fragments bound together by submarine cementation and biological encrustation. Recovery of primary and secondary framework ranged from 22% (avg.) in branching-coral facies to 33% in intervals dominated by head corals. Accretion rate decreased as expected with water depth. However, the recovery of recognizable coral generally increased with water depth, inversely to presumed coral-growth rates. This pattern reflects a spectrum in the relative importance of coral growth (primary construction), bioerosion, hydromechanical breakdown and the transport of sediment and detritus. The relative importance of each is controlled by the physical-oceanographic conditions at the site of reef development and will dictate both the architecture of the reef and the character of its internal fabric. We do not propose that framework reefs do no exist, as they most assuredly do. However, the fact that so many modern reefs are not dominated by in-place and interlocking framework suggests that its use as the primary determinant of ancient reefs may be unreasonable. We, therefore, propose the abandonment of framework-based models in favor of those that treat framework generation, physical/biological degradation, sedimentation, and encrustation as equal partners in the development of modern and ancient reefs alike.

Carbonates and Evaporites↗

Water resources of the Snake River watershed, east-central Minnesota

Glacial drift overlies sedimentary, igneous, and metamorphic rocks in the Snake River watershed. The Snake River, which drains an area of about 1,030 square miles, originates in an extensive area of peat bogs in the northern part of the watershed. It flows southward across gently rolling glacial terrain in which the major relief is near the river. Near the southern boundary of the watershed, the Snake River turns eastward to its confluence with the St. Croix River. The northwest half of the watershed is heavily forested, whereas much of the southeast half has been cleared. The largest communities in the watershed, Mora and Pine City, had 1970 populations of 2,582 and 2,143, respectively.

Minnesota↗

Floods in Colorado

The first records of floods in Colorado antedated the settlement of the State by about 30 years. These were records of floods on the Arkansas and Republican Rivers in 1826. Other floods noted by traders, hunters and emigrants, some of whom were on their way to the Far West, occurred in 1844 on the Arkansas River, and by inference on the South Platte River. Other early floods were those on the Purgatoire, the Lower Arkansas, and the San Juan Rivers about 1859. The most serious flood since settlement began was that on the Arkansas River during June 1921, which caused the loss of about 100 lives and an estimated property loss of $19,000,000. Many floods of lesser magnitude have occurred, and some of these have caused loss of life and very considerable property damage. Topography is the chief factor in determining the location of storms and resulting floods. These occur most frequently on the eastern slope of the Front Range. In the mountains farther west precipitation is insufficient to cause floods except during periods of melting snow, in June. In the southwestern part of the State, where precipitation during periods of melting snow is insufficient to cause floods, the severest floods yet experienced resulted from heavy rains in September 1909 and October 1911. In the eastern foothills region, usually below an altitude of about 7,500 feet and extending for a distance of about 50 miles east of the mountains, is a zone subject to rainfalls of great intensity known as cloudbursts. These cloudbursts are of short duration and are confined to very small areas. At times the intensity is so great as to make breathing difficult for those exposed to a storm. The areas of intense rainfall are so small that Weather Bureau precipitation stations have not been located in them. Local residents, being cloudburst conscious, frequently measure the rainfall in receptacles in their yards, and such records constitute the only source of information regarding the intensity. A flood resulting from a cloudburst rises so quickly that it is usually described as a 'wall of water.' It has a peak duration of only a few minutes, followed by a rapid subsidence. Nearly 90 cloudburst floods in Colorado are described in varying detail in this report. The earliest recorded cloudburst--called at that time a waterspout--occurred in Golden Gate Gulch, July 14, 1872. The 'wall of water' was described as a 'perpendicular breast of 10 or 12 feet.' A cloudburst flood on Kiowa Creek in May 1878 caused the loss of a standard-gage locomotive, and although search was made by means of long metallic rods, the locomotive was never recovered, as bedrock was about 50 feet below the creek bed. All available information relative to floods in Colorado, beginning with the flood of 1826 on the Arkansas River, is presented in this report, although for many of the earlier floods estimates of discharge are lacking. Floods throughout a large part of the State have occurred in 1844, June 1864, June 1884, May 1894, and June 1921. The highest floods of record were on the larger streams and occurred as follows: South Platte River, June 1921; Rio Grande, June 1927; Colorado River, June and July 1884; San Juan River, October 1911. The greatest floods on the plains streams occurred during May and June 1935 and were caused by cloudbursts. Ranchers living in the vicinity noted rainfalls as high as 24 inches in a 13-hour period, measurements being made in a stock tank. The effect of settlement on channel capacities can be clearly traced. When settlement began, and with it the beginning of the livestock industry, the plains were thickly covered with a luxuriant growth of grasses. With the development of the livestock industry the grass cover was grazed so closely that it afforded little protection against erosion during the violent rains and resulting floods. The intensive grazing packed the soil so hard as to increase greatly the percentage of rainfall that entered the streams. This co

Water Supply Paper↗

Great Lakes Cladophora harbors phylogenetically diverse nitrogen-fixing microorganims

Abstract Nitrogen‐fixing microorganisms are among the epiphytic communities in Cladophora, potentially benefitting the algae in nutrient‐deficient waters, but their abundance and diversity remain unexplored. In this study, we determined the abundance and taxonomic composition of these nitrogen‐fixing microorganisms in Cladophora growing on rocks, breakwall structures, or submerged dreissenid mussel beds around southern Lake Michigan (N = 33) during the summer 2015, using two complementary genomic techniques: quantitative PCR (qPCR) and shotgun metagenomic sequencing. Genomic DNA was extracted from processed algal pellets, and the nitrogen‐fixing microbes were quantified by qPCR by targeting the nifH gene. Mean nifH concentrations (log10 copy numbers/gram algae fresh weight ± SE) were 5.54 ± 0.09, ranging from 4.31 to 6.57. Mean nifH concentrations in water samples (log10 copy numbers/milliliter of water ± SE) were: 3.25 ± 0.06, ranging from 2.41 to 3.90. Shotgun sequencing of a subset of algal samples representing the four sampling locations (N = 10) revealed as many as 267 nifH reads from among the sequences of the 10 shotgun metagenomes (averaging 27 reads per metagenome), ranging from 5 to 91 reads from Jeorse Park (September) and North Beach (September) locations. Taxonomic assignment of nifH sequences identified members from bacteria and archaea domains showing a clear separation of reads at domain and lower taxonomic levels. Bacteria were relatively more abundant than archaea. Anabaena, Bradyrhizobium, Geobacter, Methylocystis, Oscillatoria sp., and Skermanella (all bacteria), and Methanoregula, Methanothrix, and Methanosarcina (archaea) were among the nitrogen‐fixing genera identified by the MEGAN Community Edition program. Collectively, these findings show that phylogenetically diverse nitrogen‐fixing microbial communities are part of the Cladophora microbiome, likely contributing to the algal nitrogen needs.

Environmental DNA↗

Mitochondrial genome diversity and population mitogenomics of Polar cod (Boreogadus saida) and Arctic dwelling gadoids

High-latitude fish typically exhibit a narrow thermal tolerance window, which may pose challenges when coping with temperatures that shift outside of a species’ range of tolerance. Due to its role in aerobic metabolism and energy balance, the mitochondrial genome is likely critical for the acclimation and adaptation to differing temperature regimes in marine ectotherms. As oceans continue to warm, there is growing need to understand the ability of organisms to respond to changing environmental conditions given evidence that some species, in particular cold-water species, may already be experiencing difficulties. To assess how Arctic gadids in Alaska have responded to differential thermal preferences in the past and how regions are interconnected, we sequenced complete mitochondrial genomes for four Arctic gadids to determine the distribution of mitochondrial diversity and population-level structure as well as to detect signatures of selection acting on the mitochondrial genome. We found little population-level structure within all four species with the clear exception of Gulf of Alaska saffron cod ( Eleginus gracilis ). Northern localities exhibited higher levels of genetic diversity and primarily northern lineages were observed within polar cod ( Boreogadus saida ) and saffron cod, likely reflecting asymmetrical dispersal and potentially admixture of distinct lineages via ocean currents. The main evolutionary force shaping the evolution of the mitogenome appears to be purifying selection, but we also identified potential positive selection of candidate amino acid replacements primarily in complex I (ND genes) in polar cod. The high levels of mitochondrial diversity observed in our study and large population size may provide this species with the ability to respond evolutionarily (i.e. long-term) to a changing environment.

Alaska↗

Rare earth elements in Japan Sea sediments and diagenetic behavior of Ce/Ce∗: results from ODP Leg 127

The relative effects of paleoceanographic and paleogeographic variations, sediment lithology, and diagenetic processes on the recorded rare earth element (REE) chemistry of Japan Sea sediments are evaluated by investigating REE total abundances and relative fractionations in 59 samples from Ocean Drilling Program Leg 127. REE total abundances (ΣREE) in the Japan Sea are strongly dependent upon the paleoceanographic position of a given site with respect to terrigenous and biogenic sources. REE concentrations at Site 794 (Yamato Basin) overall correspond well to aluminosilicate chemical indices and are strongly diluted by SiO 2 within the late Miocene-Pliocene diatomaceous sequence. Eu/Eu* values at Site 794 reach a maximum through the diatomaceous interval as well, most likely suggesting an association of Eu/Eu* with the siliceous component, or reflecting slight incorporation of a detrital feldspar phase. ΣREE at Site 795 (Japan Basin) also is affiliated strongly with aluminosilicate phases, yet is diluted only slightly by siliceous input. At Site 797 (Yamato Basin), REE is not as clearly associated with the aluminosilicate fraction, is correlated moderately to siliceous input, and may be sporadically influenced by detrital heavy minerals originating from the nearby rifted continental fragment composing the Yamato Rise. The biogenic influence is largest at Site 794, moderately developed at Site 797, and of only minor importance at Site 795, reflecting basinal contrasts in productivity such that the Yamato Basin records greater biogenic input than the Japan Basin, while the most productive waters overlie the easternmost sequence of Site 794. Ce/Ce* profiles at all three sites increase monotonically with depth, and record progressive diagenetic LREE fractionation. The observed Ce/Ce* record does not respond to changes in oxygenation state of the overlying water, and Ce/Ce* correlated slightly better with depth than with age. The downhole increase in Ce/Ce* at Site 794 and Site 797 is a passive response to diagenetic transfer of LREE (except Ce) from sediment to interstitial water. At Site 795, the overall lack of correlation between Ce/Ce* and L (l n /Yb n suggests that other processes are occurring which mask the diagenetic behavior of all LREEs. First-order calculations of the Ce budget in Japan Sea waters and sediment indicate that ~20% of the excess Ce adsorbed by settling particles is recycled within the water column, and that an additional ~38% is recycled at or near the seafloor (data from Masuzawa and Koyama, 1989). Thus, because the remaining excess Ce is only ~10% of the total Ce, there is not a large source of Ce to the deeply buried sediment, further suggesting that the downhole increase in Ce/Ce* is a passive response to diagenetic behavior of the other LREEs. The REE chemistry of Japan Sea sediment therefore predicts successive downhole addition of LREEs to deeply-buried interstitial waters.

Geochimica et Cosmochimica Acta↗