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At least 793 records · Page 44Linked to original sources
USGS2014

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River fall Chinook salmon ESU, 1/1/2012 – 12/31/2013: Annual report, 1991-029-00

The portion of the Snake River fall Chinook Salmon Oncorhynchus tshawytscha ESU that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2014 in association with U.S. Endangered Species Act recovery efforts and other Federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) predator responses in the Snake River upper and lower reaches as abundance of adult and juvenile fall Chinook Salmon increased. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence has been relatively stable; whereas the timing of parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier as apparent abundance of juveniles has increased. Growth rate (g/d) and dispersal size of parr also declined as apparent abundance of juveniles increased. Passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster as estimated abundance of fall Chinook Salmon smolts in Lower Granite Reservoir has increased. In 2014, consumption of subyearlings by Smallmouth Bass was highest in the upper reach which had the highest abundance of Bass. With a few exceptions, predation tended to decrease seasonally from April through early July. A release of hatchery fish in mid-May significantly increased subyearling consumption by the following day. We estimated that over 600,000 subyearling fall Chinook Salmon were lost to Smallmouth Bass predation along the free-flowing Snake River in 2014. More information on predation is presented in Appendix A.3 (page 51). These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use the information covered here in a comprehensive modeling effort to conduct action effectiveness and uncertainty research and to inform fish population, hydrosystem, harvest, hatchery, and predation and invasive species management RM&E.

Oregon, Washington↗
USGS2015

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River fall Chinook salmon ESU, 1/1/2014 - 12/31/2014

The portion of the Snake River fall Chinook Salmon Oncorhynchus tshawytscha ESU that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2014 in association with U.S. Endangered Species Act recovery efforts and other Federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) predator responses in the Snake River upper and lower reaches as abundance of adult and juvenile fall Chinook Salmon increased. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence has been relatively stable; whereas the timing of parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier as apparent abundance of juveniles has increased. Growth rate (g/d) and dispersal size of parr also declined as apparent abundance of juveniles increased. Passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster as estimated abundance of fall Chinook Salmon smolts in Lower Granite Reservoir has increased. In 2014, consumption of subyearlings by Smallmouth Bass was highest in the upper reach which had the highest abundance of Bass. With a few exceptions, predation tended to decrease seasonally from April through early July. A release of hatchery fish in mid-May significantly increased subyearling consumption by the following day. We estimated that over 600,000 subyearling fall Chinook Salmon were lost to Smallmouth Bass predation along the free-flowing Snake River in 2014. More information on predation is presented in Appendix A.3 (page 51). These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use the information covered here in a comprehensive modeling effort to conduct action effectiveness and uncertainty research and to inform fish population, hydrosystem, harvest, hatchery, and predation and invasive species management RM&E.

Oregon, Washington↗
USGS2012

Loss and modification of habitat

Amphibians live in a wide variety of habitats around the world, many of which have been modified or destroyed by human activities. Most species have unique life history characteristics adapted to specific climates, habitats (e.g., lentic, lotic, terrestrial, arboreal, fossorial, amphibious), and local conditions that provide suitable areas for reproduction, development and growth, shelter from environmental extremes, and predation, as well as connectivity to other populations or habitats. Although some species are entirely aquatic or terrestrial, most amphibians, as their name implies, lead a dual life and require a mosaic of habitats in both aquatic and terrestrial ecosystems. With over 6 billion people on Earth, most species are now persisting in habitats that have been directly or indirectly influenced by human activities. Some species have disappeared where their habitats have been completely destroyed, reduced, or rendered unsuitable. Habitat loss and degradation are widely considered by most researchers as the most important causes of amphibian population decline globally (Barinaga 1990; Wake and Morowitz 1991; Alford and Richards 1999). In this chapter, a background on the diverse habitat requirements of amphibians is provided, followed by a discussion of the effects of urbanization, agriculture, livestock grazing, timber production and harvesting, fire and hazardous fuel management, and roads on amphibians and their habitats. Also briefly discussed is the influence on amphibian habitats of natural disturbances, such as extreme weather events and climate change, given the potential for human activities to impact climate in the longer term. For amphibians in general, microhabitats are of greater importance than for other vertebrates. As ectotherms with a skin that is permeable to water and with naked gelatinous eggs, amphibians are physiologically constrained to be active during environmental conditions that provide appropriate body temperatures and adequate water balance (Thorson and Svihla 1943; Brattstrom 1963; Tracy 1976). Hence, individuals require and seek specific microhabitats that maintain their preferred body temperature while at the same time reducing water loss or allowing individuals to re-hydrate. Amphibians also possess relatively few physical attributes that protect them from predators. Although they may avoid predators behaviourally or deter them by skin toxins, amphibians lack defensive shells or hardened cuticles, do not have protective teeth or claws, and most are insufficiently fast to escape predators. Hence, they are relatively dependent on sites that conceal or protect them from predation. Most amphibians also differ significantly from other vertebrates in possessing a complex two-phase life cycle: the pre-metamorphic larval (tadpole) stage and the post-metamorphic juvenile and adult stage (Wilbur 1980, 1984). Most amphibian species have two distinct econes (Heatwole 1989), each with different habitat requirements, the larvae being aquatic and the post-metamorphic animals more terrestrial. The habitats required by the two phases can differ greatly, but both are essential to the survival of a species. However, amphibian diversity is great and exceptions to this general pattern exist. For example, some species have direct development without going through a larval stage and are fully terrestrial, whereas the larvae of other species can reach sexual maturity without going through metamorphosis (i.e., neoteny) and are fully aquatic.

Book chapter↗
USGS2017

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River Fall Chinook Salmon ESU, 1/1/2016 - 12/31/2016

The portion of the Snake River fall Chinook Salmon Oncorhynchus tshawytscha ESU that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2016 in association with U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) predator responses in the Snake River upper and lower reaches as abundance of adult and juvenile fall Chinook Salmon increased. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence has been relatively stable; whereas the timing of parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier as apparent abundance of juveniles has increased. Growth rate (g/d) and dispersal size of parr also declined as apparent abundance of juveniles increased. Passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster as estimated abundance of fall Chinook Salmon smolts in Lower Granite Reservoir has increased. In 2016, we described estimated the consumption rate and loss of subyearlings by Smallmouth Bass before, during, and after four hatchery releases. Before releases, Smallmouth Bass consumption rates of subyearling was low (0–0.36 fish/bass/d), but the day after the releases consumption rates reached as high as 1.6 fish/bass/d. Bass consumption in the upper portion of Hells Canyon was high for about 1–2 d before returning to pre-release levels, but in the lower river consumption rates were reduced but took longer to return to pre-release levels. We estimated that most of the subyearlings consumed by bass were of hatchery origin. Smallmouth Bass predation on subyearlings is intense following a hatchery release, but the predation pressure is relatively short-lived as subyearlings quickly disperse downstream. This information will allow us to better estimate subyearling loss to predation from our past efforts at time intervals less than 2 weeks. These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use the information covered here in a comprehensive modeling effort to conduct action effectiveness and uncertainty research and to inform Fish Population, Hydrosystem, Harvest, Hatchery, and Predation and Invasive Species Management RM&E.

Snake River basin↗
USGS2014

Offshore pelagic fish community

Lake Ontario’s offshore zone, as defined by Stewart et al. (2013), comprises all waters of the lake where the bottom depth is greater than 15 m excluding those in embayments. When the lake is thermally stratified during June-October, the offshore pelagic zone includes the upper-warm and middle-cool layers of water which serve as important habitat for Alewife and other prey fishes, and for predators like salmon and trout. Early changes in the fish community of the offshore pelagic zone are well documented elsewhere (e.g., Smith 1972; Christie 1973) as are more recent changes (e.g., Owens et al. 2003; Mills et al. 2003). Currently the offshore fish community consists of a mix of native and non-native species. Native species are those that were present prior to European colonization and for the offshore pelagic zone, include predators like Atlantic Salmon and prey fish like Cisco, Emerald Shiner, and Threespine Stickleback. Non-native species are those that were introduced unintentionally like Alewife and Rainbow Smelt, or that were introduced intentionally like Chinook Salmon, Coho Salmon, Rainbow Trout, and Brown Trout. Non-native salmon and trout were introduced originally by fisheries managers to provide fishing opportunities and later to reduce an overabundance of Alewife. Alewife is the most abundant prey fish in the offshore pelagic zone and it dominates the diets of native and introduced predators (Brandt 1986; Lantry 2001). Alewife can have direct and indirect negative effects on other fishes through competition for food and/or predation on their larvae (Madenjian et al. 2008). Alewife also contain thiaminase, an enzyme that catalyzes the breakdown of thiamine, and fish that eat mainly Alewife can become thiamine deficient which impairs their reproduction (Honeyfield et al. 2005). Except for that of the Alewife, prey fish populations in the offshore pelagic zone are depressed, and not large enough to sustain the zone’s predators. Alewife remain necessary for a functional ecosystem that is required to sustain a highly-valued, trophy sport fishery (Stewart et al. 2013). Wild production of trout and salmon occurs in Lake Ontario tributaries, contributing to in-lake populations (Rand et al. 1993; Connerton et al. 2009; Connerton et al. 2014c). Stocking hatchery-reared fish (Fig. 1), however, remains an essential tool for managing Lake Ontario’s diverse trout and salmon fisheries and achieving the Offshore Pelagic Zone Goal (Stewart et al. 2013): Maintain the offshore pelagic fish community, that is characterized by a diversity of trout and salmon species including Chinook Salmon, Coho Salmon, Rainbow Trout, Brown Trout, and Atlantic Salmon, in balance with prey-fish populations and lower trophic levels. Here we review the fish-community objectives (FCOs) for Lake Ontario’s offshore pelagic zone (Stewart et al. 2013) and evaluate whether those objectives were met during this reporting period (2008-2013) by assessing the status of the objectives’ indicators. We also compare the status of indicators in this reporting period with those in the previous reporting period (2003-2007) (Connerton et al. 2014b). Specific objectives are in italics at the start of each major section and associated indicators of progress are given in Progress and Outlook subsections.

Lake Ontario↗
USGS2023

First investigations on lamprey responses to elevated total dissolved gas exposure and risk of gas bubble trauma

A flexible spill program in the federal Columbia River power system increased the total dissolved gas (TDG) water quality standards (i.e., the gas cap) from 120% to 125%. Spill is used to pass juvenile salmon (Oncorhynchus spp.) over dams, but it can generate elevated TDG, and exposed fish can develop gas bubble trauma (GBT) or experience mortality. Juvenile salmon are monitored for GBT through the Fish Passage Center’s (FPC), and under the flexible spill program, native non-salmonid fishes are also monitored. Pacific Lamprey (Entosphenus tridentatus) are exposed to elevated TDG, but nothing is known about their risk for GBT. This project is the first to evaluate GBT in lamprey, beginning with larval and juvenile lamprey in a controlled laboratory setting. These early life stages were chosen for this initial work because they have been shown to be more sensitive to GBT in other fish species. We modified the FPC protocol for GBT exams to be specific to lamprey and ranked bubbles in the mouth, eyes (juveniles only), gill pores, first and second dorsal fins, caudal fin, anal fin, vent, and body. We followed the FPC ranking criteria and assigned rank based on the proportion of the area occluded with bubbles, as 0=no bubbles, 1=1-5%, 2=6-25%, 3=26-50%, and 4=>50%. Four experiments were completed with larval lamprey from January to September 2022 using small (70 mm total length or less) and large (86 mm total length or greater) larvae in approximately equal proportions. Experiments included: (1) 130% TDG for 31 d, (2) 125% TDG for 91 d, (3) 130% TDG for 20 d with assessments of burrowing performance, and (4) 128-138% TDG for 3-4 d with assessments of predator avoidance ability and the corresponding untreated control groups. The first and second experiments had similar study designs and findings. First, we tested an acute exposure at 130% TDG and then we tested a chronic exposure at 125%, to represent a full spill season. None of the controls (exposed to normally saturated water) experienced mortality or showed GBT signs. Few lamprey in the treatment groups (5% in Experiment 1; 0% in Experiment 2) showed GBT signs, and there were no mortalities (n=200 fish experiment 1; n=100 fish Experiment 2). Lamprey with GBT signs had bubbles on the body, with low severity ranks. During external exams for Experiment 2, we observed bubbles in the gut of several lamprey. The light coloration and transparency of the body made these observations possible, and we confirmed the finding with internal exams. From day 9 to day 91, 70.8% of the lamprey examined had bubbles in the gut. We observed five lamprey that were positively buoyant in the test tanks, and we likely underestimated the prevalence of floating as our procedures were not initially designed to document this sign. In our third experiment, burrowing performance was not significantly different between lamprey exposed to 130% TDG and controls. Mortality was 4.2% in the treatment group, but no GBT signs were observed. The proportion of lamprey with positive buoyancy increased through time, with 87.5% of fish floating on day 20 (end of the test). Bubbles in the gut were observed for some lamprey on each of five sampling dates (day 2 to 20), with prevalence ranging from 50-100%. Median burrow times ranged from 28 to 154 sec for treatment fish and from 40 to 100 sec for controls. We noted some atypical behaviors during burrow performance tests, including lamprey that were positively buoyant and unable to descend through 0.5 m of water to reach the sediment as well as lamprey that were unable to complete burrowing (within 10 min test period). These lamprey were so buoyant that they repeatedly floated to the surface of the water when they stopped or slowed their burrowing movements. Predator avoidance ability was assessed in our fourth experiment by exposing lamprey with GBT signs (floating) and controls to sculpin (Cottus spp.) until about 50% of the fish had been consumed or 2 h had passed. We completed five predation trials, testing the hypothesis that an equal proportion of treatment and control lamprey would be consumed. Treatment groups were generated by exposing 15 lamprey to 128-138% TDG for 3-4 d, until at least 10 lamprey were floating. Overall, 41 treatment and 46 control fish were eaten and there was no evidence that sculpin preferentially preyed upon lamprey with GBT signs. Additional tests with another predator are recommended. Two experiments were completed with juvenile lamprey from March to November 2022: Experiment 5 exposed fish to 125% TDG for 10 d and Experiment 6 exposed fish to 125% for 16 d. Mortality rates for the treatment groups were 21.7% and 20.0% for these experiments, respectively, and few lamprey (4 per experiment) showed GBT signs. With the results from experiments pooled, bubbles were observed in all body areas with low severity ranks (means 0-1). We observed some exophthalmia and bubbles behind the gill pores, in addition to bubbles in the gut and fish floating. The presence of bubbles in or near the gill pores was the likely cause of death as exam findings included enlarged gill pore areas and restricted openings. This project provided the first insights into lamprey responses to elevated TDG, but substantial learning opportunities remain. Our findings highlight that lamprey are vulnerable to GBT, but the effects are generally sublethal and would not be detected using FPC exam procedures. For example, we observed larval and juvenile lamprey that had bubbles in the gut and/or were floating, although these conditions were not consistently linked. More data are needed, but we surmise that it takes some time for bubbles to form in sufficient quantity to create the floatation required to overcome the mass of the lamprey. Positive buoyancy in natural settings could have substantial impacts to the risk of mortality for lamprey. Future studies could test GBT risk for larval lamprey in burrows, investigate the influence of lamprey size, measure performance (e.g., burrowing, swimming, predator avoidance ability) after elevated TDG exposure, and describe the rate that GBT signs dissipate when lamprey are returned to normally saturated water.

Report↗
USGS2023

Gopherus Agassizii (Mojave Desert Tortoise). nest depredation

Nest site selection is an important determinant of clutch success and hatchling sex ratios in Gopherus agassizii, Mojave Desert tortoises (Spotila et al. 1994. Herpetol. Monogr. 8:103-116). G. agassizii lay eggs in or near the entrance of their burrows (Ennen et al. 2012. Copeia 2012:222-228) and females of both G. agassizii and G. morafkai, may reduce egg predation risk by remaining at their burrows for days or weeks after oviposition, potentially protecting them from predators (Murray et al. 1996. Herpetological Natural History 4(1):83-88., Agha et al. 2013. Southwest. Nat. 58(2):254-257). Numerous species are known or suspected predators of desert tortoise eggs, including Vulpes macrotis (kit foxes), Spilogale gracilis (western spotted skunks), Mephitis mephitis (striped skunks), Taxidea taxus (badgers), Ammospermophilus leucurus (white-tailed antelope squirrels), Lynx rufus (bobcats), Canis latrans (coyotes), Masticophis flagellum (coachwhips), and Heloderma suspectum (Gila monsters) (Ernst & Lovich 2009. Johns Hopkins University Press, Baltimore 2:827). Here we report visitation and nest depredation at a Mojave Desert tortoise nest by multiple predators, and add a new documented species, the Urocyon cinereoargenteus (gray fox), to the list of known predators on desert tortoise eggs.

Herpetological Review↗
USGS2017

Species interactions and the effects of climate variability on a wetland amphibian metacommunity

Disentangling the role that multiple interacting factors have on species responses to shifting climate poses a significant challenge. However, our ability to do so is of utmost importance to predict the effects of climate change on species distributions. We examined how populations of three species of wetland-breeding amphibians, which varied in life history requirements, responded to a six-year period of extremely variable precipitation. This interval was punctuated by both extensive drought and heavy precipitation and flooding, providing a natural experiment to measure community responses to environmental perturbations. We estimated occurrence dynamics using a discrete hidden Markov modeling approach that incorporated information regarding habitat state and predator–prey interactions. This approach allowed us to measure how metapopulation dynamics of each amphibian species was affected by interactions among weather, wetland hydroperiod, and co-occurrence with fish predators. The pig frog, a generalist, proved most resistant to perturbations, with both colonization and persistence being unaffected by seasonal variation in precipitation or co-occurrence with fishes. The ornate chorus frog, an ephemeral wetland specialist, responded positively to periods of drought owing to increased persistence and colonization rates during periods of low-rainfall. Low probabilities of occurrence of the ornate chorus frog in long-duration wetlands were driven by interactions with predators due to low colonization rates when fishes were present. The mole salamander was most sensitive to shifts in water availability. In our study area, this species never occurred in short-duration wetlands and persistence probabilities decreased during periods of drought. At the same time, negative effects occurred with extreme precipitation because flooding facilitated colonization of fishes to isolated wetlands and mole salamanders did not colonize wetlands once fishes were present. We demonstrate that the effects of changes in water availability depend on interactions with predators and wetland type and are influenced by the life history of each of our species. The dynamic species occurrence modeling approach we used offers promise for other systems when the goal is to disentangle the complex interactions that determine species responses to environmental variability.

Florida↗
USGS2024

Chronic wasting disease alters the movement behavior and habitat use of mule deer during clinical stages of infection

Integrating host movement and pathogen data is a central issue in wildlife disease ecology that will allow for a better understanding of disease transmission. We examined how adult female mule deer ( Odocoileus hemionus ) responded behaviorally to infection with chronic wasting disease (CWD). We compared movement and habitat use of CWD-infected deer ( n = 18) to those that succumbed to starvation (and were CWD-negative by ELISA and IHC; n = 8) and others in which CWD was not detected ( n = 111, including animals that survived the duration of the study) using GPS collar data from two distinct populations collared in central Wyoming, USA during 2018–2022. CWD and predation were the leading causes of mortality during our study (32/91 deaths attributed to CWD and 27/91 deaths attributed to predation). Deer infected with CWD moved slower and used lower elevation areas closer to rivers in the months preceding death compared with uninfected deer that did not succumb to starvation. Although CWD-infected deer and those that died of starvation moved at similar speeds during the final months of life, CWD-infected deer used areas closer to streams with less herbaceous biomass than starved deer. These behavioral differences may allow for the development of predictive models of disease status from movement data, which will be useful to supplement field and laboratory diagnostics or when mortalities cannot be quickly retrieved to assess cause-specific mortality. Furthermore, identifying individuals who are sick before predation events could help to assess the extent to which disease mortality is compensatory with predation. Finally, infected animals began to slow down around 4 months prior to death from CWD. Our approach for detecting the timing of infection-induced shifts in movement behavior may be useful in application to other disease systems to better understand the response of wildlife to infectious disease.

Wyoming↗
USGS2021

Interrupted incubation: How dabbling ducks respond when flushed from the nest

Nesting birds must provide a thermal environment sufficient for egg development while also meeting self‐maintenance needs. Many birds, particularly those with uniparental incubation, achieve this balance through periodic incubation recesses, during which foraging and other self‐maintenance activities can occur. However, incubating birds may experience disturbances such as predator or human activity which interrupt natural incubation patterns by compelling them to leave the nest. We characterized incubating mallard Anas platyrhynchos and gadwall Mareca strepera hens’ responses when flushed by predators and investigators in Suisun Marsh, California, USA. Diurnal incubation recesses initiated by investigators approaching nests were 63% longer than natural diurnal incubation recesses initiated by the hen (geometric mean: 226.77 min versus 142.04 min). Nocturnal incubation recesses, many of which were likely the result of predators flushing hens, were of similar duration regardless of whether the nest was partially depredated during the event (115.33 [101.01;131.68] minutes) or not (119.62 [111.96;127.82] minutes), yet were 16% shorter than natural diurnal incubation recesses. Hens moved further from the nest during natural diurnal recesses or investigator‐initiated recesses than during nocturnal recesses, and the proportion of hen locations recorded in wetland versus upland habitat during recesses varied with recess type (model‐predicted means: natural diurnal recess 0.77; investigator‐initiated recess 0.82; nocturnal recess 0.31). Hens were more likely to take a natural recess following an investigator‐initiated recess earlier that same day than following a natural recess earlier that same day, and natural recesses that followed an investigator‐initiated recess were longer than natural recesses that followed an earlier natural recess, suggesting that hens may not fulfill all of their physiological needs during investigator‐initiated recesses. We found no evidence that the duration of investigator‐initiated recesses was influenced by repeated visits to the nest, whether by predators or by investigators, and trapping and handling the hen did not affect investigator‐initiated recess duration unless the hen was also fitted with a backpack‐harness style GPS–GSM transmitter at the time of capture. Hens that were captured and fitted with GPS–GSM transmitters took recesses that were 26% longer than recesses during which a hen was captured but a GPS–GSM transmitter was not attached. Incubation interruptions had measurable but limited and specific effects on hen behavior.

Ecology and Evolution↗
USGS2022

Influence of riparian thinning on trophic pathways supporting stream food webs in forested watersheds

Resource managers seek to thin second-growth riparian forests to address multiple stream and riparian management objectives, including enhancing aquatic productivity via light-mediated trophic pathways in watersheds of the Pacific Northwest (USA). However, such increases in aquatic productivity depend on complex food web dynamics that link riparian forests and streams. To evaluate how riparian forest thinning influences stream food webs, we conducted a replicated, manipulative field experiment in three northern California watersheds composed of second-growth redwood forests and tracked responses across multiple trophic levels (periphyton, macroinvertebrates, amphibians, and fish) 1 year pre- and post-treatment. Riparian thinning treatments increased light to the stream channel, yet we observed mixed responses by stream food webs. Thinning did not change stream periphyton biomass on natural substrates but increased periphyton accrual on ceramic tiles. Periphyton accrual appeared to be partially muted by top-down effects from invertebrate scrapers, which were more abundant in thinned reaches. Prey in the diets of top predators—coastal giant salamanders ( Dicamptodon tenebrosus ) and coastal cutthroat trout ( Oncorhynchus clarkii clarkii )—did not change in biomass, composition, or structure in response to thinning and instead varied more seasonally and between predators. Stable isotope analysis indicated that shifts in carbon (δ 13 C) signatures of stream periphyton associated with thinning were reflected to varying extents by primary consumers but did not propagate up to top predators. Top predator biomass responses varied between species, where salamander biomass remained unchanged, but cutthroat trout biomass increased slightly in thinned reaches. However, trout biomass responses were not supported by diets or isotopes and correlated weakly with changes in light associated with thinning, suggesting little evidence that responses could be attributed directly to changes in autotrophic pathways. Furthermore, we found no evidence that local trophic responses to thinning propagated into downstream reaches. Taken together, we observed that trophic pathways supporting stream food webs remained largely intact immediately after riparian thinning treatments. Collectively, these results suggest that riparian thinning does not necessarily enhance aquatic productivity in forested streams, indicating that contextual factors driving realized ecological responses should be accounted for when considering thinning as a restoration strategy for stream–riparian ecosystems.

California↗
USGS2025

Spatiotemporal interactions facilitate sympatry in a diverse mammalian community

Understanding mechanisms underlying coexistence among potential competitors, and between predators and prey, is a persistent challenge in community ecology. Using 6 years (2013–2018) of camera-trapping data and species interaction models, we investigated the spatiotemporal patterns of inter- and intra-guild interspecific interactions in a diverse terrestrial mammalian community in Pakke Wildlife Sanctuary and Tiger Reserve (PTR), Northeast India. We found no evidence of spatial interaction among apex predators (tiger Panthera tigris , leopard Panthera pardus , and dhole Cuon alpinus ). However, dholes temporally separated themselves from tigers and leopards. Among small carnivores, marbled cat ( Pardofelis marmorata ) and leopard cat ( Prionailurus bengalensis ) exhibited temporal separation, whereas leopard cat overlapped spatially and temporally with other small carnivores. Herbivores exhibited neither spatial nor temporal separation with each other. All apex predators exhibited diel activity and space-use patterns to overlap with their preferred prey. Our results suggest that the assembly of the diverse mammalian community of PTR is a complex process, and coexistence among potential competitors, and predators and prey is likely facilitated by several mechanisms including spatial and temporal segregation, and potentially dietary separation.

Arunachal Pradesh↗
USGS2025

Unintended indirect effects limit elk productivity from supplemental feeding in the Greater Yellowstone Ecosystem

The widespread practice of supplemental feeding, a bottom-up forcing of resource availability, is intended to improve wildlife population health and survival. However, supplemental feeding could trigger indirect effects by altering predation rates and disease dynamics. We investigated the effects of feeding on three key elk ( Cervus canadensis ) population productivity metrics (calf:cow ratios, annual change in elk density, and harvestable surplus) across 13 regions in the Greater Yellowstone Ecosystem (GYE) over 26 years. Incorporating previous population size, climate, predator, and harvest data in a Bayesian regression framework revealed new insights about elk productivity metrics in the GYE. Supplemental feeding was associated with increased calf:cow ratios (4.9%) but was not substantially related to changes in elk density and harvestable surplus, which are both management targets. Notably, the feeding effect on calf:cow ratios appeared to be offset by increased wolf ( Canis lupus ) and grizzly bear ( Ursus arctos horribilis ) predation. We hypothesize that increased elk productivity resulting from supplemental feeding is primarily transferred to predator and pathogen trophic levels in this system with limited observed effects on elk abundance and harvestable surplus. Anthropogenic food resources may have unintended indirect consequences on other trophic levels that potentially limit the direct impacts of feeding.

Idaho, Montana, Wyoming↗
USGS2018

Survival and cause-specific mortality of desert bighorn sheep lambs

Juvenile recruitment in desert bighorn sheep (Ovis canadensis mexicana) is highly variable, yet the mechanisms driving neonate survival are not well understood for the species. Few studies have equipped desert bighorn sheep lambs with radiocollars. As a result, definitive data on cause-specific mortality and lamb survival estimates are lacking. Our objectives were to estimate lamb survival rates and determine cause-specific mortality for desert bighorn sheep lambs during a period of mountain lion (Puma concolor) and coyote (Canis latrans) removal in southwestern New Mexico. We captured pregnant adult females each fall and fitted them with a telemetry collar and a vaginal implant transmitter to aid with neonate captures. We captured and radiocollared 12 desert bighorn sheep lambs in 2012 and 14 in 2013 within 48 hrs of parturition in the Peloncillo Mountains, New Mexico. We used the nest survival model in program MARK to estimate lamb survival to 6 months of age. Across both years there were 14 mortalities, 12 (86%) of which were due to predation. Mountain lions killed 5 lambs (2 in 2012 and 3 in 2013), coyotes killed 4 lambs (all in 2013), a gray fox (Urocyon cinereoargenteus) killed 1 lamb in 2012; 2 lambs were killed by unknown predators in 2013. Staged-based survival estimates indicated the highest mortality rates occurred in the first week post birth; 33% to 36% of all lamb mortalities occurred before 7 days of age. Lamb survival was substantially lower in 2013 (0.20 ± 0.11 [SE]) than in 2012 (0.69 ± 0.16) with the differences in survival attributed to increased coyote predation in 2013. We did not detect differences in body mass, chest girth, or neck circumference between lambs that were killed by predators and those that survived. Coyotes, mountain lions and gray fox killed lambs <8 weeks of age, but only mountain lions killed lambs > 8 weeks old. Studies that fail to capture desert bighorn lambs near parturition will likely produce negatively biased survival estimates and inaccurate appraisals of primary causes of mortality due to early mortality of lambs.

New Mexico↗
USGS2023

Survival, cause-specific mortality, and population growth of white-tailed deer in western Virginia

Understanding the role of recruitment in population dynamics of white-tailed deer ( Odocoileus virginianus ) is important for management. In the central Appalachian Mountains, deer are part of a largely forested ecosystem that supports 3 carnivore species thought to be capable of influencing white-tailed deer recruitment: black bears ( Urus americanus ), coyotes ( Canis latrans ), and bobcats ( Lynx rufus ). Yet little is known about predation, how other environmental factors influence recruitment, or the importance of neonate survival to white-tailed deer population performance in the region. Our objectives were to identify causes of mortality for neonates, analyze effects of landscape attributes on survival of neonates, estimate survival rates for neonates and adult female white-tailed deer, and to model population growth trends based on current vital rates and hypothetical harvest and neonate survival scenarios. During 2019–2020, we captured 57 neonate deer in Bath County, Virginia, USA, by monitoring 38 pregnant females equipped with global positioning system collars and vaginal implant transmitters and by conducting transect searches for recently born neonates. We observed 37 neonate mortalities and identified cause of death using field and genetic evidence. Mortalities included 28 predation events and 9 deaths from other causes (e.g., abandonment, malnutrition, disease). Black bears accounted for 48.6% of neonate mortalities, and 64.2% of predation events ( n = 18), followed by bobcats ( n = 5) and coyotes ( n = 3). Annual survival for adult female deer was 0.871 and neonate survival to 12 weeks old was 0.310. Elevation was a significant predictor of neonate survival; mortality risk increased 20% for every 100-m increase in elevation. Models of annual population growth using observed vital rates predicted an increasing population (λ = 1.10). A 10% increase in female harvest would still result in a potential population increase of 2% (λ = 1.02), but a 20% increase in harvest rate would result in a potential 7% decline (λ = 0.93). Neonate survival was higher near fertile valley bottoms and lower along forested ridges characterized by shallow, infertile soils and limited edge or early successional forests. While predation, largely influenced by black bears, was the leading cause of neonate mortality and contributed to low neonate survival, we observed little evidence of population decline, and suggest there is opportunity for a modest increase in harvest of female deer.

Virginia↗
USGS2018

Key morphological features favor the success of nonnative fish species under reduced turbidity conditions in the lower Colorado River Basin

As a result of anthropomorphic alterations to the lower Colorado River basin and other southwestern rivers, water turbidity has been greatly reduced and introduced, nonnative fishes thrive in these waterways. To quantify key morphological features that may allow nonnative fishes to displace native fishes, we compared eye diameter (a proxy for visual acuity) and maximum anatomical gape (a proxy for maximum prey size) in native and nonnative fishes of the lower Colorado River basin. In general, nonnative fishes have larger eyes and larger gapes relative to native fishes. Native invertivorous and piscivorous fishes may be at a particular disadvantage when compared with nonnative species from the same trophic guild because native midwater predators have proportionally smaller eyes and mouths. In the historically turbid conditions of the Colorado River, native fish likely had a limited ability to use vision to locate prey and avoid predators. Similarly, native fishes could not identify potential food items from a distance in turbid waters so suction‐based prey capture (where the predator is in close proximity to the prey) may have been favored over ram‐based prey capture (where fish swim from a distance to overtake prey). Many nonnative fish species have a large eye diameter and maximum anatomical gape; these features likely facilitate their ability to visually identify and capture large, elusive prey. These results suggest that the large eyes and large gapes of nonnative fishes make them superior predators and competitors in the clear, anthropomorphically altered southwestern rivers of the USA.

Lower Colorado River Basin↗
USGS2020

Trophic structure of apex fish communities in closed versus leaky lakes of arctic Alaska

Despite low species diversity and primary production, trophic structure (e.g., top predator species, predator size) is surprisingly variable among Arctic lakes. We investigated trophic structure in lakes of arctic Alaska containing arctic char Salvelinus alpinus using stomach contents and stable isotope ratios in two geographically-close but hydrologically-distinct lake clusters to investigate how these fish may interact and compete for limited food resources. Aside from different lake connectivity patterns (‘leaky’ versus ‘closed’), differing fish communities (up to five versus only two species) between lake clusters allowed us to test trophic hypotheses including: (1) arctic char are more piscivorous, and thereby grow larger and obtain higher trophic positions, in the presence of other fish species; and, (2) between arctic char size classes, resource polymorphism is more prominent, and thereby trophic niches are narrower and overlap less, in the absence of other predators. Regardless of lake cluster, we observed little direct evidence of arctic char consuming other fishes, but char were larger (mean TL = 468 vs 264 mm) and trophic position was higher (mean TP = 4.0 vs 3.8 for large char) in lakes with other fishes. Further, char demonstrated less intraspecific overlap when other predators were present whereas niche overlap was up to 100% in closed, char only lakes. As hydrologic characteristics (e.g., lake connectivity, water temperatures) will change across the Arctic owing to climate change, our results provide insight regarding potential concomitant changes to fish interactions and increase our understanding of lake trophic structure to guide management and conservation goals.

Alaska↗
USGS2021

Behaviorally-mediated trophic cascade attenuated by prey use of risky places at safe times

The mere threat of predation may incite behavioral changes in prey that lead to community-wide impacts on productivity, biodiversity, and nutrient cycling. The paucity of experimental manipulations, however, has contributed to controversy over the strength of this pathway in wide-ranging vertebrate systems. We investigated whether simulated gray wolf ( Canis lupus ) presence can induce behaviorally-mediated trophic cascades, specifically, whether the ‘fear’ of wolf olfactory cues alone can change deer foraging behavior in ways that affect plants and soils. Wolves were recently removed from the Cedar Creek Ecosystem Science Reserve (Minnesota, USA), such that consumptively mediated predator effects were negligible. At 32 experimental plots, we crossed two nested treatments: wolf urine application and herbivore exclosures. We deployed camera traps to quantify how white-tailed deer ( Odocoileus virginianus ) adjusted their spatiotemporal habitat use, foraging, and vigilance in response to wolf cues and how these behavioral changes affected plant productivity, plant communities, and soil nutrients. Weekly applications of wolf urine significantly altered deer behavior, but deer responses did not cascade to affect plant or soil properties. Deer substantially reduced crepuscular activity at wolf-simulated sites compared to control locations. As wolves in this area predominantly hunted during mornings and evenings, this response potentially allows deer to maximize landscape use by accessing dangerous areas when temporal threat is low. Our experiment suggests that prey may be sensitive to ‘dynamic’ predation risk that is structured across both space and time and, consequentially, prey use of risky areas during safe times may attenuate behaviorally-mediated trophic cascades at the predator–prey interface.

Minnesota↗