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At least 793 records · Page 44Linked to original sources
USGS2018

Improved conventional PCR assay for detecting Tetracapsuloides bryosalmonae DNA in fish tissues

Conventional PCR is an established method to detect Tetracapsuloides bryosalmonae DNA in fish tissues and to confirm diagnosis of proliferative kidney disease (PKD) caused by T. bryosalmonae . However, the commonly used PKX5f‐6r primers were designed with the intention of obtaining sequence information and are suboptimal for determining parasite DNA presence. A new PCR assay to detect T. bryosalmonae 18s rDNA, PKX18s1266f‐1426r, is presented that demonstrates specificity, repeatability, and enhanced sensitivity over the PKX5f‐6r assay. The limit of detection of the PKX18s1266f‐1426r assay at 95% confidence was 100 template copies, and the new primers detected parasite DNA more consistently at template concentrations below 100 copies than did PKX5f‐6r. The PKX18s1266f‐1426r also achieved 100% detection at sample DNA concentrations one order of magnitude lower than PKX5f‐6r. Out of 127 salmonid fish with unknown T. bryosalmonae infection status, PKX5f‐6r detected 35 positive samples, while the new assay detected 43. The discrepancy in T. bryosalmonae detection between the two primer sets may be attributed to several differences between the assays, including oligonucleotide melting temperatures, the use of a touchdown PCR thermal cycle, and amplicon length.

Journal of Aquatic Animal Health↗
USGS2018

IUPAC Periodic Table of the Elements and Isotopes (IPTEI) for the education community (IUPAC Technical Report)

The IUPAC (International Union of Pure and Applied Chemistry) Periodic Table of the Elements and Isotopes (IPTEI) was created to familiarize students, teachers, and non-professionals with the existence and importance of isotopes of the chemical elements. The IPTEI is modeled on the familiar Periodic Table of the Chemical Elements. The IPTEI is intended to hang on the walls of chemistry laboratories and classrooms. Each cell of the IPTEI provides the chemical name, symbol, atomic number, and standard atomic weight of an element. Color-coded pie charts in each element cell display the stable isotopes and the relatively long lived radioactive isotopes having characteristic terrestrial isotopic compositions that determine the standard atomic weight of each element. The background color scheme of cells categorizes the 118 elements into four groups: (1) white indicates the element has no standard atomic weight, (2) blue indicates the element has only one isotope that is used to determine its standard atomic weight, which is given as a single value with an uncertainty, (3) yellow indicates the element has two or more isotopes that are used to determine its standard atomic weight, which is given as a single value with an uncertainty, and (4) pink indicates the element has a well-documented variation in its atomic weight, and the standard atomic weight is expressed as an interval. An element-by-element review accompanies the IPTEI and includes a chart of all known stable and radioactive isotopes for each element. Practical applications of isotopic measurements and technologies are included for the following fields: forensic science, geochronology, Earth-system sciences, environmental science, and human health sciences, including medical diagnosis and treatment.

Pure and Applied Chemistry↗
USGS2005

Thiamine content and thiaminase activity of ten freshwater stocks and one marine stock of alewives

Alewives Alosa pseudoharengus contain thiaminase activity that has been implicated in the development of a thiamine deficiency and associated effects in salmonines of the Great Lakes basin. Little is known about the factors that regulate thiaminase activity in alewives. We sampled alewives of uniform size (60-120 mm) during the summer of 1998 from the Gulf of St. Lawrence, seven of New York's Finger Lakes, one inland lake in Ontario, and two Great Lakes to assess possible relationships among thiamine, lipid content, fish abundance, lake morphometry, lake productivity, freshwater residency, and thiaminase activity. Thiaminase activity varied significantly among the 11 locations but was unrelated to thiamine concentration, which did not vary significantly. Alewife thiaminase activity in the Finger Lakes was negatively related to lipid content and positively related to measures of lake size (e.g., area, volume, and maximum depth). Activity in the one marine stock sampled in the Gulf of St. Lawrence was comparable to the highest values observed in the 10 freshwater stocks examined. Variation in alewife thiaminase activity has the potential to affect the extent of a thiamine deficiency associated with salmonines who feed on alewives as well as the viability of their offspring.

Big Rideau Lake, Finger Lakes, Gulf of St. Lawrenc↗
USGS2011

A hierarchical spatial framework and database for the national river fish habitat condition assessment

Fisheries management programs, such as the National Fish Habitat Action Plan (NFHAP), urgently need a nationwide spatial framework and database for health assessment and policy development to protect and improve riverine systems. To meet this need, we developed a spatial framework and database using National Hydrography Dataset Plus (I-.100,000-scale); http://www.horizon-systems.com/nhdplus). This framework uses interconfluence river reaches and their local and network catchments as fundamental spatial river units and a series of ecological and political spatial descriptors as hierarchy structures to allow users to extract or analyze information at spatial scales that they define. This database consists of variables describing channel characteristics, network position/connectivity, climate, elevation, gradient, and size. It contains a series of catchment-natural and human-induced factors that are known to influence river characteristics. Our framework and database assembles all river reaches and their descriptors in one place for the first time for the conterminous United States. This framework and database provides users with the capability of adding data, conducting analyses, developing management scenarios and regulation, and tracking management progresses at a variety of spatial scales. This database provides the essential data needs for achieving the objectives of NFHAP and other management programs. The downloadable beta version database is available at http://ec2-184-73-40-15.compute-1.amazonaws.com/nfhap/main/.

Fisheries↗
USGS2004

Passive tick surveillance, dog seropositivity, and incidence of human Lyme disease

Data on nymphal Ixodes scapularis ticks submitted by the public to the University of Rhode Island Tick Research Laboratory for testing from 1991 to 2000 were compared with human case data from the Rhode Island Department of Health to determine the efficacy of passive tick surveillance at assessing human risk of Lyme disease. Numbers of ticks submitted were highly correlated with human cases by county ( r = 0.998, n = 5 counties) and by town ( r = 0.916, n = 37 towns), as were the numbers of positive ticks submitted ( r = 0.989 by county, r = 0.787 by town). Human cases were correlated with ticks submitted by town each year, and with positive ticks in all but 2 years. Thus, passive tick surveillance effectively assessed geographical risk of human Lyme disease. In contrast, tick submissions through time were not correlated with human cases from year to year. Dog seropositivity was significantly correlated with human cases by county in both years tested, but by town in only one of two years. Numbers of ticks submitted were correlated with dog seropositivity by county but not by town, apparently because of high variability among towns with small sample sizes. Our results suggest that passive tick surveillance, using ticks submitted by the public for Lyme spirochete testing, can be used to assess the geographical distribution of Lyme disease risk, but cannot reliably predict Lyme incidence from year to year.

Vector-Borne and Zoonotic Diseases↗
USGS1992

Nonpoint-source pollutant discharges of the three major tributaries to Reelfoot Lake, west Tennessee, October 1987-September 1989

An investigation of the concentration and loads of nitrogen, phosphorus, and suspended sediment in storm runoff to Reelfoot Lake, in western Tennessee, was conducted from October 1987 through September 1989. Concentrations of selected herbicides also were defined. Reelfoot Lake, with a surface area of about 15,500 acres, is the largest natural lake in Tennessee and an important recreation and fisheries resource. Previous studies showed that the lake is hypereutrophic, a condition caused by high concentrations of nutrients in water and sediments discharged from the three principal tributaries (South Reelfoot Creek, North Reelfoot Creek, and Running Slough) to the lake. Pesticides, including herbicides, have been detected in the lake's bottom sediments. Storm runoff contributed about 87percent of the total water discharge of the three main tributaries to Reelfoot Lake. South Reelfoot Creek contributed about 4.7 tons per acre per year of suspended sediment, while North Reelfoot Creek contributed about 1.9 tons per acre per year. Running Slough contributed only about 0.31 ton per acre per year of suspended sediment. Most of the suspended sediment was transported by storm runoff between October and March. About 80 percent of the annual streamflow of the three tributaries occurs during these months. The North Reelfoot Creek basin contributed 8.2 pounds per acre per year of total nitrogen and 2.4 pounds per acre per year of total phosphorus. South Reelfoot Creek basin contributed about 6.5 and 1.3 pounds per acre per year of total nitrogen and phosphorus, respectively, while Running Slough basin contributions were 3.4 and 0.86 pounds per acre per year, respectively. The differences in nutrient yields appear to result from more row-crop agriculture and the relatively steeply sloping agricultural land in the North Reelfoot Creek basin. Ninety-one percent of the total nitrogen load and 95 percent of the total phosphorus load in the three streams was transported by storm runoff. Significant differences in the mean concentrations of nutrients in runoff were defined between the active agricultural months (April through September) and the inactive months (October through March). Storm-runoff samples were analyzed for II selected triazine herbicides. Alachlor and atrazine were the most commonly detected herbicides. Thirty-two percent of the samples contained detectable levels of alachlor and 93 percent of the samples contained detectable levels of atrazine. Ninety percent of the samples collected during the active agricultural months contained detectable leveki of alachlor and all 29 samples contained detectable levels of atrazine. Sixteen samples exceeded lifetime health-advisory levels for atrazine in drinking water (3 micrograms per liter); two samples collected from the April IS, 1988, storm at North Reelfoot Creek and South Reelfoot Creek contained 42 and 57 micrograms per liter of atrazine, respectively. Concentrations of the other nine triazine herbicides were generally less than the level of detection (0.1 microgram per liter).

Tennessee↗
USGS2020

Mercury and selenium concentrations in fishes of the Upper Colorado River Basin, southwestern United States: A retrospective assessment

Mercury (Hg) and selenium (Se) are contaminants of concern for fish in the Upper Colorado River Basin (UCRB). We explored Hg and Se in fish tissues (2,324 individuals) collected over 50 years (1962–2011) from the UCRB. Samples include native and non-native fish collected from lotic waterbodies spanning 7 major tributaries to the Colorado River. There was little variation of total mercury (THg) in fish assemblages basin-wide and only 13% (272/1959) of individual fish samples exceeded the fish health benchmark (0.27 μg THg/g ww). Most THg exceedances were observed in the White-Yampa tributary whereas the San Juan had the lowest mean THg concentration. Risks associated with THg are species specific with exceedances dominated by Colorado Pikeminnow (mean = 0.38 and standard error ± 0.08 μg THg/g ww) and Roundtail Chub (0.24 ± 0.06 μg THg/g ww). For Se, 48% (827/1720) of all individuals exceeded the fish health benchmark (5.1 μg Se/g dw). The Gunnison river had the most individual exceedances of the Se benchmark (74%) whereas the Dirty Devil had the fewest. We identified that species of management concern accumulate THg and Se to levels above risk thresholds and that fishes of the White-Yampa (THg) and Gunnison (Se) rivers are at the greatest risk in the UCRB.

Upper Colorado River Basin↗
USGS2006

Cross-shore velocity shear, eddies and heterogeneity in water column properties over fringing coral reefs: West Maui, Hawaii

A multi-day hydrographic survey cruise was conducted to acquire spatially extensive, but temporally limited, high-resolution, three-dimensional measurements of currents, temperature, salinity and turbidity off West Maui in the summer of 2003 to better understand coastal dynamics along a complex island shoreline with coral reefs. These data complement long-term, high-resolution tide, wave, current, temperature, salinity and turbidity measurements made at a number of fixed locations in the study area starting in 2001. Analyses of these hydrographic data, in conjunction with numerous field observations, evoke the following conceptual model of water and turbidity flux along West Maui. Wave- and wind-driven flows appear to be the primary control on flow over shallower portions of the reefs while tidal and subtidal currents dominate flow over the outer portions of the reefs and insular shelf. When the direction of these flows counter one another, which is quite common, they cause a zone of cross-shore horizontal shear and often form a front, with turbid, lower-salinity water inshore of the front and clear, higher-salinity water offshore of the front. It is not clear whether these zones of high shear and fronts are the cause or the result of the location of the fore reef, but they appear to be correlated alongshore over relatively large horizontal distances (orders of kilometers). When two flows converge or when a single flow is bathymetrically steered, eddies can be generated that, in the absence of large ocean surface waves, tend to accumulate material. Areas of higher turbidity and lower salinity tend to correlate with regions of poor coral health or the absence of well-developed reefs, suggesting that the oceanographic processes that concentrate and/or transport nutrients, contaminants, low-salinity water or suspended sediment might strongly influence coral reef ecosystem health and sustainability.

Continental Shelf Research↗
USGS1996

Occurrence and concentrations of volatile organic compounds in shallow ground water in the Lower Susquehanna River Basin, Pennsylvania and Maryland

This report presents the results of a regional assessment of volatile organic compounds (VOC's) in ground water from six sampling areas within the Lower Susquehanna River Basin. The sampling areas, selected to represent aquifers where ground water is used as a drinking water supply, include four areas underlain by limestone, one area underlain by crystalline bedrock, and one area underlain by interbedded sandstone and shale. The land use is rural in five areas and urban in one area. Samples were collected in 1993-95 from 118 wells ranging from 30 to 226 feet deep. Analyses for 60 VOC's at detection levels ranging from 0.05 to 0.2 mg/L (micrograms per liter) reveal the presence of 24 compounds. The compounds were present in water from 32 of the 118 wells. Methyl tert-butyl ether was the most commonly detected compound. Concentrations of methyl tert-butyl ether, found in 16 of the 118 wells, ranged from 0.11 to 51 mg/L. Chloroform was the second most commonly detected compound. The highest concentration detected in a water sample was 61 mg/L of chloroform. None of the detections in samples from wells used as drinking water supplies exceeded the Maximum Contaminant Levels or Lifetime Health Advisory Levels established by the U.S. Environmental Protection Agency. However, the 51 mg/L of methyl tert-butyl ether, detected in water from a monitoring well, is in the 20 to 200 mg/L range proposed for a Lifetime Health Advisory Level. The occurrence of VOC's in limestone aquifers in the Great Valley near Harrisburg, Pa., is influenced by land use. VOC's occur more frequently in the urban area than in the agricultural area. Within the urban area, analyses of samples from wells, springs, and a spring-fed stream show contaminated ground water discharging from springs and flowing into the stream.

Maryland, Pennsylvania↗
USGS2010

Low-flow frequency and flow duration of selected South Carolina streams in the Broad River basin through March 2008

In 2008, the U.S. Geological Survey, in cooperation with the South Carolina Department of Health and Environmental Control, initiated a study to update low-flow statistics at continuous-record streamgaging stations operated by the U.S. Geological Survey in South Carolina. This report presents the low-flow statistics for 23 selected streamgaging stations in the Broad River basin in South Carolina, and includes flow durations of 5-, 10-, 25-, 50-, 75-, 90-, and 95-percent probability of exceedance and the annual minimum 1-, 3-, 7-, 14-, 30-, 60-, and 90-day mean flows with recurrence intervals of 2, 5, 10, 20, 30, and 50 years, depending on the length of record available at the streamgaging station. The low-flow statistics were computed from records available through March 31, 2008. In addition, flow duration information is presented for one streamgaging station 021556525, Pacolet River below Lake Blalock near Cowpens, SC, where recurrence interval computations were not appropriate. Of the 23 streamgaging stations for which recurrence interval computations were made, 14 had low-flow statistics that were published in previous U.S. Geological Survey reports. A comparison of the low-flow statistics for the minimum mean flow for a 7-consecutive-day period with a 10-year recurrence interval (7Q10) from this study with the most recently published values indicated that 8 of the 14 streamgaging stations had values that were within plus or minus 25 percent of the previous value. Ten of the 14 streamgaging stations had negative percent differences indicating the low-flow statistic had decreased since the previous study, and 4 streamgaging stations had positive percent differences indicating that the low-flow statistic had increased since the previous study. The low-flow statistics are influenced by length of record, hydrologic regime under which the record was collected, techniques used to do the analysis, and other changes, such as urbanization, diversions, and so on, that may have occurred in the basin.

South Carolina↗
USGS2010

Occurrence of herbicides and pharmaceutical and personal care products in surface water and groundwater around Liberty Bay, Puget Sound, Washington

Organic contaminants, such as pharmaceuticals and personal care products (PPCPs), pose a risk to water quality and the health of ecosystems. This study was designed to determine if a coastal community lacking point sources, such as waste water treatment plant effluent, could release PPCPs, herbicides, and plasticizers at detectable levels to their surface water and groundwater. Research was conducted in Liberty Bay, an embayment within Puget Sound, where 70% of the population (∼10,000) uses septic systems. Sampling included collection of groundwater and surface water with grab samples and the use of polar organic chemical integrative samplers (POCIS). We analyzed for a broad spectrum of 25 commonly used compounds, including PPCPs, herbicides, and a flame retardant. Twelve contaminants were detected at least once; only N,N-diethyl-meta-toluamide, caffeine, and mecoprop, a herbicide not attributed to septic systems, were detected in more than one grab sample. The use of POCIS was essential because contaminants were present at very low levels (nanograms), which is common for PPCPs in general, but particularly so in such a small community. The use of POCIS allowed the detection of five compounds that were not present in grab samples. Data suggest that the community is contaminating local water with PPCPs; this effect is likely to increase as the population and product usage increase. The results presented here are a first step toward assessing the transport of herbicides and PPCPs into this coastal system.

Washington↗
USGS1989

Debris is not a cheese: litter in coastal Louisiana

An 18-month study of six Louisiana beaches determined the extent, composition, and possible sources of beach litter. Data showed that from 2590 to 23,154 items may be encountered along any one-mile stretch of Louisiana beach, depending upon location and season, and that densities of litter ranged from 5 to 28 items per 100 m2. Plastics constituted 47% of the total, followed by polystyrene at 16% and glass at 10%. Drink-related items accounted for 40% of the identifiable material; operational wastes, 21%; galley wastes, 15%; personal items, 11%; and fishing items, 6%. Litter laws already exist at state and federal levels. Strict enforcement of Annex V of MARPOL should significantly reduce plastic beach litter. Solutions to beach litter will come from public participation in adopt-a-beach programs and statewide clean-ups and from educational programs focusing on existing laws, proper disposal methods, recycling, and the threat litter poses to wildlife and public health.

Conference Paper↗
USGS2016

Biochemical and clinical responses of Common Eiders to implanted satellite transmitters

Implanted biologging devices, such as satellite-linked platform transmitter terminals (PTTs), have been used widely to delineate populations and identify movement patterns of sea ducks. Although in some cases these ecological studies could reveal transmitter effects on behavior and mortality, experiments conducted under controlled conditions can provide valuable information to understand the influence of implanted tags on health and physiology. We report the clinical, mass, biochemical, and histological responses of captive Common Eiders ( Somateria mollissima ) implanted with PTTs with percutaneous antennas. We trained 6 individuals to dive 4.9 m for their food, allowed them to acclimate to this dive depth, and implanted them with PTTs. We collected data before surgery to establish baselines, and for 3.5 mo after surgery. The first feeding dive took place 22 hr after surgery, with 5 of 6 birds diving to the bottom within 35 hr of surgery. Plumage waterproofing around surgical sites was reduced ≤21 days after surgery. Mass; albumin; albumin:globulin ratio; aspartate aminotransferase; β 1 -, β 2 -, and γ-globulins; creatine kinase; fecal glucocorticoid metabolites; heterophil:lymphocyte ratio; and packed cell volume changed from baseline on one or more of the postsurgery sampling dates, and some changes were still evident 3.5 mo after surgery. Our findings show that Common Eiders physiologically responded for up to 3.5 mo after surgical implantation of a PTT, with the greatest response occurring within the first few weeks of implantation. These responses support the need for postsurgery censor periods for satellite telemetry data and should be considered when designing studies and analyzing information from PTTs in sea ducks.

The Condor↗
USGS2026

Vegetation cover and composition in environments surrounding uranium mines in the Grand Canyon ecosystem, Northern Arizona

Mining uranium from breccia-pipe deposits in the greater Grand Canyon region has occurred since the mid-1900s. However, possible ecosystem contamination with harmful levels of radionuclides may have occurred due to mining activities in the 21st century. In response, a 20-year Federal moratorium on new mining claims in the Grand Canyon watershed was initiated in 2012, to allow time to evaluate the potential effects of uranium exploration and mining on human health, wildlife, and water resources. This moratorium, nor the 2023 designation of the “Baaj Nwaavjo I’tah Kukveni–Ancestral Footprints of the Grand Canyon National Monument,” precludes operation or development of mining claims predating 2012. Vegetation is a core ecosystem component that may be affected by uranium mining (for instance, through uptake and storage of radionuclides from the air or soil) or may act as a vector of exposure to wildlife, livestock, and humans (for instance, via their consumption of contaminated plant tissues). To provide baseline information about the plant communities associated with uranium mines in the Grand Canyon region, the U.S. Geological Survey surveyed an approximately 200-meter-wide buffer surrounding four breccia-pipe deposits, each in a unique stage of mine development, and at one reference area (a livestock water tank) that underwent ground disturbance but contains no mineral deposits. We sectioned the buffer zones into 0.65–4.52 hectare plots, within which we (1) inventoried all plant species, (2) measured percent cover of plant species, plant functional groups, and ground surface types (dark cyanobacteria, lichen, moss, bedrock, rock, embedded litter, duff, plant bases, and bare soil) using line-point intercept, and (3) measured length and frequency of gaps between perennial plant canopies using canopy gap intercept. We found that plant composition at the mines and the reference area differed from one another but were all characteristic of expected regional vegetation patterns. We provide this data summary as potential baseline information for future research and management efforts.

Arizona↗
USGS2025

Multi-sensor proximal remote sensing for cover crop biomass estimation at high and moderate spatial resolutions

Cover crops play a critical role in providing agroecological services such as improving soil health, reducing erosion and nitrogen loss, and suppressing weeds, which are closely tied to their performance such as accumulated biomass. This study evaluated the Active Canopy Sensor (ACS) -214, an active proximal sensing device equipped with its own light-emitting red and near-infrared spectral reflectance sensors, a time-of-flight laser, and an ultrasonic sensor, for estimating winter cover crop biomass across 13 U.S. states from 2020 to 2024. We assessed 11 species from three functional groups – grasses ( n = 797), legumes ( n = 264), and brassicas ( n = 181) – using Random Forest (RF) models and four cross-validation strategies. The ACS-214 showed moderate to strong prediction accuracy for grasses ( R 2 = 0.51 – 0.64) and legumes ( R 2 = 0.44 – 0.76), though performance declined in leave-one-region-out analyses ( R 2 = 0.06 – 0.46), indicating limited spatial generalizability. Brassica models had low prediction accuracy for all models ( R 2 < 0.30), likely due to flowering and patchy growth. Biomass prediction breakpoints were observed at ∼3000 kg ha −1 for legumes and ∼4000 kg ha −1 for grasses. We also evaluated the effectiveness of using ACS-214 data to train Sentinel-2 satellite imagery for estimating grass cover crop biomass using withheld, out of bag data from 2023 to 2024. Sentinel-2 RF models trained with ACS-214 data showed good agreement with field-sampled ( R 2 = 0.58 – 0.61) and ACS-214-estimated biomass ( R 2 = 0.70). While Sentinel-2 offers scalability, the ACS-214 enables finer-resolution biomass mapping and better accounts for within-field variability, making it an effective tool for localized management and monitoring. These findings support the integration of proximal and satellite sensing approaches to enhance cover crop biomass estimation and agroecological assessment.

Alabama, Florida, Indiana, Iowa, Kansas, Maryland,↗
USGS2010

Source and fate of inorganic solutes in the Gibbon River, Yellowstone National Park, Wyoming, USA: I. Low-flow discharge and major solute chemistry

The Gibbon River in Yellowstone National Park (YNP) is an important natural resource and habitat for fisheries and wildlife. However, the Gibbon River differs from most other mountain rivers because its chemistry is affected by several geothermal sources including Norris Geyser Basin, Chocolate Pots, Gibbon Geyser Basin, Beryl Spring, and Terrace Spring. Norris Geyser Basin is one of the most dynamic geothermal areas in YNP, and the water discharging from Norris is much more acidic (pH 3) than other geothermal basins in the upper-Madison drainage (Gibbon and Firehole Rivers). Water samples and discharge data were obtained from the Gibbon River and its major tributaries near Norris Geyser Basin under the low-flow conditions of September 2006. Surface inflows from Norris Geyser Basin were sampled to identify point sources and to quantify solute loading to the Gibbon River. The source and fate of the major solutes (Ca, Mg, Na, K, SiO 2 , Cl, F, HCO 3 , SO 4 , NO 3 , and NH 4 ) in the Gibbon River were determined in this study and these results may provide an important link in understanding the health of the ecosystem and the behavior of many trace solutes. Norris Geyser Basin is the primary source of Na, K, Cl, SO 4 , and N loads (35–58%) in the Gibbon River. The largest source of HCO 3 and F is in the lower Gibbon River reach. Most of the Ca and Mg originate in the Gibbon River upstream from Norris Geyser Basin. All the major solutes behave conservatively except for NH 4 , which decreased substantially downstream from Gibbon Geyser Basin, and SiO 2 , small amounts of which precipitated on mixing of thermal drainage with the river. As much as 9–14% of the river discharge at the gage is from thermal flows during this period.

Wyoming↗
USGS2016

Contamination with bacterial zoonotic pathogen genes in U.S. streams influenced by varying types of animal agriculture

Animal waste, stream water, and streambed sediment from 19 small (< 32 km 2 ) watersheds in 12 U.S. states having either no major animal agriculture (control, n = 4), or predominantly beef ( n = 4), dairy ( n = 3), swine ( n = 5), or poultry ( n = 3) were tested for: 1) cholesterol, coprostanol, estrone, and fecal indicator bacteria (FIB) concentrations, and 2) shiga-toxin producing and enterotoxigenic Escherichia coli , Salmonella , Campylobacter , and pathogenic and vancomycin-resistant enterococci by polymerase chain reaction (PCR) on enrichments, and/or direct quantitative PCR. Pathogen genes were most frequently detected in dairy wastes, followed by beef, swine and poultry wastes in that order; there was only one detection of an animal-source-specific pathogen gene ( stx1 ) in any water or sediment sample in any control watershed. Post-rainfall pathogen gene numbers in stream water were significantly correlated with FIB, cholesterol and coprostanol concentrations, and were most highly correlated in dairy watershed samples collected from 3 different states. Although collected across multiple states and ecoregions, animal-waste gene profiles were distinctive via discriminant analysis. Stream water gene profiles could also be discriminated by the watershed animal type. Although pathogen genes were not abundant in stream water or streambed samples, PCR on enrichments indicated that many genes were from viable organisms, including several (shiga-toxin producing or enterotoxigenic E. coli , Salmonella , vancomycin-resistant enterococci) that could potentially affect either human or animal health. Pathogen gene numbers and types in stream water samples were influenced most by animal type, by local factors such as whether animals had stream access, and by the amount of local rainfall, and not by studied watershed soil or physical characteristics. Our results indicated that stream water in small agricultural U.S. watersheds was susceptible to pathogen gene inputs under typical agricultural practices and environmental conditions. Pathogen gene profiles may offer the potential to address both source of, and risks associated with, fecal pollution.

Arizona, Indiana, Iowa, Kentucky, Maryland, Michig↗
USGS2004

Impacts of water development on aquatic macroinvertebrates, amphibians, and plants in wetlands of a semi-arid landscape

We compared the macroinvertebrate and amphibian communities of 12 excavated and 12 natural wetlands in western North Dakota, USA, to assess the effects of artificially lengthened hydroperiods on the biotic communities of wetlands in this semi-arid region. Excavated wetlands were much deeper and captured greater volumes of water than natural wetlands. Most excavated wetlands maintained water throughout the study period (May to October 1999), whereas most of the natural wetlands were dry by June. Excavated wetlands were largely unvegetated or contained submergent and deep-marsh plant species. The natural wetlands had two well-defined vegetative zones populated by plant species typical of wet meadows and shallow marshes. Excavated wetlands had a richer aquatic macroinvertebrate community that included several predatory taxa not found in natural wetlands. Taxa adapted to the short hydroperiods of seasonal wetlands were largely absent from excavated wetlands. The amphibian community of natural and excavated wetlands included the boreal chorus frog ( Pseudacris maculata ), northern leopard frog ( Rana pipiens ), plains spadefoot ( Scaphiopus bombifrons ), Woodhouse's toad ( Bufo woodhousii woodhousii ), and tiger salamander ( Ambystoma tigrinum ). The plains spadefoot occurred only in natural wetlands while tiger salamanders occurred in all 12 excavated wetlands and only one natural wetland. Boreal chorus frogs and northern leopard frogs were present in both wetland types; however, they successfully reproduced only in wetlands lacking tiger salamanders. Artificially extending the hydroperiod of wetlands by excavation has greatly influenced the composition of native biotic communities adapted to the naturally short hydroperiods of wetlands in this semi-arid region. The compositional change of the biotic communities can be related to hydrological changes and biotic interactions, especially predation related to excavation.

Aquatic Ecosystem Health & Management↗