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Paleoclimates: Understanding climate change past and present

The field of paleoclimatology relies on physical, chemical, and biological proxies of past climate changes that have been preserved in natural archives such as glacial ice, tree rings, sediments, corals, and speleothems. Paleoclimate archives obtained through field investigations, ocean sediment coring expeditions, ice sheet coring programs, and other projects allow scientists to reconstruct climate change over much of earth's history. When combined with computer model simulations, paleoclimatic reconstructions are used to test hypotheses about the causes of climatic change, such as greenhouse gases, solar variability, earth's orbital variations, and hydrological, oceanic, and tectonic processes. This book is a comprehensive, state-of-the art synthesis of paleoclimate research covering all geological timescales, emphasizing topics that shed light on modern trends in the earth's climate. Thomas M. Cronin discusses recent discoveries about past periods of global warmth, changes in atmospheric greenhouse gas concentrations, abrupt climate and sea-level change, natural temperature variability, and other topics directly relevant to controversies over the causes and impacts of climate change. This text is geared toward advanced undergraduate and graduate students and researchers in geology, geography, biology, glaciology, oceanography, atmospheric sciences, and climate modeling, fields that contribute to paleoclimatology. This volume can also serve as a reference for those requiring a general background on natural climate variability.

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Animal movement: Statistical models for telemetry data

The study of animal movement has always been a key element in ecological science, because it is inherently linked to critical processes that scale from individuals to populations and communities to ecosystems. Rapid improvements in biotelemetry data collection and processing technology have given rise to a variety of statistical methods for characterizing animal movement. The book serves as a comprehensive reference for the types of statistical models used to study individual-based animal movement.

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The northern pike, a prized native but disastrous invasive: Chapter 14

As the chapters in this book describe, the northern pike Esox lucius Linneaus, 1758 is a fascinating fish that plays an important ecological role in structuring aquatic communities (chapter 8), has the capacity to aid lake restoration efforts (chapter 11), and contributes substantially to local economies, both as a highlysought after sport fish (chapter 12) and as a commercial fishing resource (chapter 13). However, despite the magnificent attributes of this fish, there is another side to its story. Specifically, what happens when northern pike, a highly efficient predator, becomes established outside its natural range? To explore this question, this chapter will investigate observed consequences from many locations where northern pike (hereafter referred to as “pike”) have been introduced and discuss potential reasons why pike, under the right circumstances, can be considered an invasive species.

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Spectroscopy of rocks and minerals and principles of spectroscopy

Spectroscopy is the study of light as a function of wavelength that has been emitted, reflected or scattered from a solid, liquid, or gas. In this chapter I will primarily discuss the spectroscopy of minerals, but the principles apply to any material. No single chapter can cover this topic adequately, and one could argue, not even a single book. Thus, in some ways, this chapter may fall short of expectations, depending on the reader. In this chapter, I have tried to provide an overview of what is already known, some of which may be covered better in other reviews. I have also tried to present some of the practical lessons of spectroscopy, some of which have been in use by spectroscopists as common knowledge, but have not necessarily been previously published in detail. See Adams (1975), Hunt (1977), Farmer (1974), Hunt (1982); Clark and Roush (1984), Clark et al. (1990a), Gaffey et al . (1993), Salisbury (1993), and references in those papers for more details.

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Proceedings of the ocean drilling program: New Jersey continental slope and rise

The Scientific Results volumes of the Proceedings of the Ocean Drilling Program contain specialty papers presenting the results of extensive research in various aspects of scientific ocean drilling. The authors of the papers published in this volume have enabled future investigators to gain ready access to the results of their research, and I acknowledge their contributions with thanks. Each paper submitted to a Scientific Results volume undergoes rigorous peer review by at least two specialists in the author's research field. A paper typically goes through at least one revision cycle before being accepted for publication. We seek to maintain a peer-review system comparable to those of the most highly regarded journals in the geological sciences. Each Scientific Results volume has an Editorial Review Board that is responsible for obtaining peer reviews of papers submitted to the volume. This board usually is made up of the two co-chief scientists for the cruise, the ODP staff scientist for the cruise, and one external specialist who is familiar with the geology of the area investigated. In addition, the volume has an ODP staff editor who assists with manuscripts that require English-language attention and who coordinates volume assembly. Scientific Results volumes may also contain short reports of useful data that are not ready for final interpretation. Papers of this type, which may be found together in a section in the back of the volume, are called Data Reports and include no interpretation of results. Data Report papers are read carefully by at least one specialist to make sure they are well organized, comprehensive, and discuss the techniques or procedures thoroughly. To acknowledge the contributions made by this volume's Editorial Review Board, the Board members are designated Editors of the volume and are so listed on the title page. Reviewers of manuscripts for this volume, whose efforts are so essential to the success of the publication, are listed in the front of the book, without attribution to a particular manuscript. On behalf of the Ocean Drilling Program, I extend sincere appreciation to members of the Editorial Review Boards and to the reviewers for giving their generous contribution of time and effort, which ensures that only papers of high scientific quality are published in the Proceedings .

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Genetics

In the current context of environmental changes, it is easy to see how extrinsic factors, such as shifts in sea surface temperature, food availability and accumulation of pollutants, can impact the health of marine mammals. However, intrinsic factors, including the genetic constitution of an individual, are also largely responsible for shaping health, particularly in terms of immune system effectiveness. In the previous edition of this book, the chapter on genetics thoroughly addressed the techniques available for identification of species, populations, stocks and individuals, studying social organization, and determining the relationships among individuals in a group. We have written the current chapter with an emphasis on how each individual’s genetic constitution and the prevalence of particular genetic variants is relevant to marine mammal health and disease. The chapter first presents a brief conceptual framework for understanding how genetics shape health and disease. We next outline common genetic techniques and current tools and technologies that are emerging in marine mammal health studies. Finally, the scope, pitfalls and limitations of these tools are discussed.

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Introduction to phytoremediation of contaminated groundwater

This book provides the reader with the comprehensive view necessary to understand and critically evaluate the design, implementation, and monitoring of phytoremediation at sites characterized by contaminated groundwater. Part I presents the historical foundation of the interaction between plants and groundwater, introduces fundamental groundwater concepts for plant physiologists, and introduces basic plant physiology for hydrogeologists. Part II presents information on how to assess, design, implement, and monitor phytoremediation projects for hydrologic control. Part III presents how plants take up and detoxify a wide range of organic xenobiotics in contaminated groundwater systems, and provides various approaches on how this can be assessed and monitored. Throughout, concepts are emphasized with numerous case studies, illustrations and pertinent literature citations.

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Skin and fin diseases

Fish are critically important to the welfare of this planet and its occupants, the health of both wild and captive fish populations paramount to our survival. This book presents the gross pathology of the most commonly encountered diseases and syndromes of fish in an organ system-based approach. It provides an overview of the diseases and disorders of tropical, ornamental, bait and food fish from freshwater, brackish and marine environments. Readers will gain a broader understanding of the basic biology of infectious and non-infectious diseases in fish, as well as novel diagnostic techniques and innovative disease control methods.

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Rapid broad-scale ecosystem changes and their consequences for biodiversity

Biodiversity contributes to and depends on ecosystem structure and associated function. Ecosystem structure, such as the amount and type of tree cover, influences fundamental abiotic variables such as near-ground incoming solar radiation (e.g., Royer et al. 2011), which in turn affects species and associated biodiversity (e.g., Trotter et al. 2008). In many systems, foundational, dominant, or keystone species (or species groups) are important in determining biodiversity, often because of their role in determining ecosystem structure. At spatial scales ranging from ecosystems to regions and larger, structural characteristics of vegetation or other structurally dominant organisms such as corals can influence species diversity, whether focused on alpha diversity (mean species diversity at the habitat level), beta diversity (differentiation among habitats), or gamma diversity (total species diversity across a landscape; Whittaker 1960). Climate change is projected to alter ecosystems at broad scales. In many cases, this will be due to extreme climate events such as droughts, floods and hurricanes, the effects of which can be rapid (IPCC 2012). Consequently, rapid broad-scale changes in ecosystems are of increasing concern. Climate change can directly affect species physiology, phenology, and distribution, as highlighted throughout this book (e.g. Citations to chapters in this volume to be added). Changes in one species can also affect other species (Cahill et al. 2013), particularly when dominant or co-dominant species that collectively provide habitat for other species are impacted (e.g. tree canopy architecture in many forest ecosystems; coral species via their reefs). Several rapid ecological changes have occurred at spatial scales that are sufficiently broad enough to represent biome changes (Gonzalez et al. 2010, Settele et al. 2014; Fig. 1 A). Rapid broad-scale changes differ from other patterns of vegetation dynamics in that they result in a “crash” in one or more populations (Breshears et al. 2008) over large areas of the affected region. Rapid broad-scale changes triggered by climate can include mega-fires; drought-triggered tree die-off and associated pest and pathogen outbreaks (Breshears et al. 2005, Safranyik et al. 2007); and hurricanes and wind-throw events (IPCC 2012, 2014). These rapid broad-scale changes can rapidly alter other factors such as resultant microclimate, which in turn can affect numerous other species and associated biodiversity (Royer et al. 2011; Fig. 1B). Many examples of broad-scale changes are documented in the paleoecology literature (Settele et al. 2014), although the temporal resolution at which those events can be resolved is relatively coarse (often centuries or longer). Such broad-scale changes documented in the paleoecology literature provide examples of types of change are likely to be of increasing concern in the future (Settele et al. 2014). Contemporary events have highlighted that broad-scale changes can occur rapidly (years or less; Breshears et al. 2005, Gonzalez et al. 2010, Settele et al. 2014). These rapid broad-scale changes will have important consequences for biodiversity beyond the direct impacts of climate change through the cascading effects associated with ecosystem structural and functional changes. The objective of this chapter is to alert readers to recent and projected rapid ecosystem changes and their potential consequences for biodiversity at ecosystem, landscape and regional scales.

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Bayesian statistics for beginners: A step-by-step approach

Bayesian statistics is currently undergoing something of a renaissance. At its heart is a method of statistical inference in which Bayes' theorem is used to update the probability for a hypothesis as more evidence or information becomes available. It is an approach that is ideally suited to making initial assessments based on incomplete or imperfect information; as that information is gathered and disseminated, the Bayesian approach corrects or replaces the assumptions and alters its decision-making accordingly to generate a new set of probabilities. As new data/evidence becomes available the probability for a particular hypothesis can therefore be steadily refined and revised. It is very well-suited to the scientific method in general and is widely used across the social, biological, medical, and physical sciences. Key to this book's novel and informal perspective is its unique pedagogy, a question and answer approach that utilizes accessible language, humor, plentiful illustrations, and frequent reference to on-line resources. Bayesian Statistics for Beginners is an introductory textbook suitable for senior undergraduate and graduate students, professional researchers, and practitioners seeking to improve their understanding of the Bayesian statistical techniques they routinely use for data analysis in the life and medical sciences, psychology, public health, business, and other fields.

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Introduction to structuring decisions

Decision structuring, also known as decision framing, provides the foundation and roadmap for analyzing a decision. For decisions that warrant a systematic approach, structuring begins with identifying the problem for analysis, which sounds simple but can be deceptively difficult because decision problems are often ill-formed at the start. Many have worked on a problem, alone or with others, only to realize down the road that it’s the wrong problem, which Ron Howard calls an “error of the third kind”. How a decision is framed, e.g., narrowly or broadly, can have a profound effect on subsequent analysis and solution. Tools and templates are available to get started, but perhaps no technique is more essential that simply taking the time to ponder on what the problem is all about. Structuring is an iterative process, which allows complexity to be added as needed because not all decisions need the full Monty analysis. All of the case studies in this book have gone through decision structuring and most followed an iterative, prototyping process. In particular, the case studies in Section I highlight the value of decision structuring to uncover hidden assumptions hindering a good solution and to figure out the scientific information needed to find a good solution.

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A science business model for answering important questions

Perhaps the biggest question in science is how to do better science. Many ecologists, including this book’s editors and authors, have succeeded under the current science “business model” and, from our perspective, the status quo works well enough. But science business models are under increased scrutiny. For instance, since 2012, at least nine papers have critiqued government-sponsored biomedical research, with the most-suggested (self-serving) solution being to spend more government funds on science (Pickett et al. 2015). To get more funding, scientists might consider first improving their return on investment. To increase return on investment, ecologists (and scientists in general) could rethink training programs, reproducibility, funding distribution, synthesis, publication models, and evaluation metrics.

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Foreward: The paleoclimatic and paleobiogeographic significance of the Tjörnes Basin, Northern Iceland

Since the mid-19th century, geologists and paleontologists have recognized the scientific importance and unique nature of the richly fossiliferous sediments exposed along the Tjörnes Peninsula in Northern Iceland. In the following century and a half, Tjörnes has attracted the attention of an international “who’s who” in Cenozoic paleontology, as well as many paleoclimatologists unraveling the complex climatic history of the North Atlantic and Arctic Oceans. In a seminal meeting, sponsored by the Royal Society of London in 1984, and published in Philosophical Transactions of the Royal Society of London, Series B, volume 318 (“The past three million years: evolution of climatic variability in the North Atlantic region”), an international group of experts addressed climatic history of the last 3 million years. Notably, one of the main invited participants was Iceland’s Dr. Thorleifur Einarsson, who literally wrote the book “Geology of Iceland” (1994, 1999), and was also known for his expertise in Tjörnes paleoclimatology. Einarsson’s key contribution was linking the marine history of Tjörnes to the rapidly growiing paleoclimate records from deep-sea marine sediment cores and improving chronology of climate evolution. This work was closely linked to the dating of Pliocene-Pleistocene glacial sediments and volcanics in Iceland and on Tjörnes in particular, based on paleomagnetic data and biostratigraphic work which was presented jointly with a group from the U.S. Geological Survey at the 1965 INQUA meeting in Boulder, Colorado.

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An overview of the world’s plovers

Plovers of the genus Charadrius and their close allies are a diverse group, numbering 40 species, many with subspecies. They breed on all continents except Antarctica, in open, sparsely vegetated habitats of tundra and grasslands, and along shores of oceans, rivers, and inland lakes. Most are migratory, especially those breeding in arctic and temperate regions; others are partial migrants or sedentary. On migration, they are poorly studied and do not always correspond to the typical shorebird (i.e., sandpiper) pattern characterized by dense flocks concentrating at a few staging areas. Their foraging ecologies are rather uniform in that all species search visually for prey using a “run-stop-peck” maneuver. Breeding birds defend nesting and foraging territories while nonbreeding birds forage in loose flocks, which may stem from individuals minimizing interference with conspecifics while enhancing benefits of shared vigilance for predators. In breeding, they are conservative, laying two to four eggs at daily or longer intervals; replacement clutches are common, especially in species with prolonged breeding seasons. Precocial young hatch after comparatively long incubation that is correlated with development of neural centers associated with vision. Their mating systems are a mix of social monogamy and biparental care, with frequent sequential polygamy, especially in temperate and tropical taxa that breed for extended periods. Population sizes vary over several orders of magnitude; several species are highly endangered. Other species are abundant and widely distributed, although their populations may also be in decline. Regardless of their status, most plovers occupy habitats throughout the year that put them at conservation risk owing to anthropogenic factors including climate change, human disturbance, habitat loss, and predation. In this book, we draw from the expertise of an international group of researchers to outline the ecologies, behaviors, and challenges of plovers throughout the annual cycle so that decision makers can be most successful in their endeavors to conserve and manage populations.

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U.S. Geological research at Grand Canyon National Park: A century of collaboration

(Fairley) When historians describe the decades preceding designation of Grand Canyon National Park (GCNP), they typically focus attention on early scientific studies conducted by John Wesley Powell, Clarence Dutton, and Charles Walcott. All three of these pioneering scientists were employed by the U.S. Geological Survey (USGS), a small Federal agency first established in 1879. Yet rarely do historians mention later contributions of USGS scientists to the subsequent development and interpretation of GCNP. This article attempts to fill this gap. When GCNP was officially designated on February 26, 1919, Grand Canyon was already a popular, internationally renowned tourist destination. Its reputation derived in no small measure from books and articles written by USGS geologists, which included some of the earliest illustrations and photographs of Grand Canyon. In addition to Powell, Dutton, and Walcott , other noteworthy USGS scientists who contributed to Grand Canyon’s early fame included Francois Matthes who, along with topographers John Stewart and Richard Evans, mapped the Canyon’s topography in painstaking detail during the first decade of the 20th century ; Levi Noble, who mapped the Precambrian geology in the Shinumo area in 1909 , and Nelson Darton, who produced the first popular guidebook about Grand Canyon’s geology for distribution by the Santa Fe Railroad . Thus, by the time Grand Canyon was designated as the Nation’s 15th national park, USGS scientists had laid a solid foundation of basic geological knowledge about this remarkable landscape upon which the National Park Service (NPS) could build. But what about the century that followed? In what respects did USGS personnel contribute to the park’s subsequent development and interpretation? The intent of this article is not to recount every scientific study undertaken by USGS scientists in Grand Canyon during the past century. Instead, this article attempts to document the various roles played by USGS professionals, working in collaboration with NPS personnel, to shape the future development and interpretation of the Park.

Arizona↗

Executive summary

This book on Ecological Assessment of Selenium in the Aquatic Environment synthesizes and advances the state-of-the-science regarding this unique metalloid and identies critical knowledge gaps. Assessment methods appropriate for other metals and metalloids are not always appropriate for selenium (Se). Selenium requires site-specific risk assessments to a much greater extent than do many other contaminants, including adequate quality assurance and quality control of chemical and biological analyses.

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Electrical imaging for hydrogeology

Geophysical methods offer hydrogeologists unprecedented access to understanding subsurface parameters and processes. In this book, we outline the theory and application of electrical imaging methods, which inject current into the ground and measure the resultant potentials. These data are sensitive to rock type, grain size, porosity, pore fluid electrical conductivity, saturation, and temperature. Here, we describe the physical basis for electrical imaging, parallels between electrical flow equations and the groundwater flow equation, practical considerations for field investigations, data processing and inverse modeling of field data, and how to QA/QC data. We additionally cover two case studies, including a 2-D waterborne survey and a 4-D dataset from a biostimulation experiment.

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Geophysical logging For hydrogeology

Geophysical logging is the measurement and analysis of electrical, acoustic, nuclear, and other physical properties in a borehole using wireline or direct push technology. Geophysical logging is one of the primary methods of collecting subsurface information for hydrogeologic investigations. Groundwater scientists and engineers should have a basic understanding of borehole geophysics and how it is applied in the characterization of aquifer systems. In this book, the different types of geophysical logs and equipment used in hydrogeologic investigations are reviewed. Applications and analysis methods are illustrated by specific examples in both unconsolidated deposits and bedrock settings. Key references for further exploration of the methods and applications are provided. Hands-on exercises are included for students to develop and practice log-analysis skills.

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