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Results for “Nature Methods”

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At least 775 records · Page 43Linked to original sources

USGS1990

Geohydrology and numerical model analysis of ground-water flow in the Pullman-Moscow area, Washington and Idaho

The geohydrology of the Pullman, Washington-Moscow, Idaho area was investigated by mapping geohydrologic units, determining the distribution of hydraulic head in each unit, and determining some of the components of the water budget. This information was used to construct a three- dimensional groundwater-flow model that incorporates three layers--a surficial loess layer, a Wanapum Basalt layer, and a Grande Ronde Basalt layer. The model was used to assess the effects of changes in the rate of withdrawal of groundwater on the water levels in the geohydrologic units and on streamflow in the area. Recharge to the groundwater system was calculated independent of the model. It was determined that current farming practices use soil moisture more effectively than did natural vegetation, and these practices have reduced groundwater recharge by nearly 10%. The three-dimensional model was calibrated using the time- averaged method for the period 1974-85, and was evaluated by simulating historical pumpage rate changes (1890-1985) and comparing calculated with observed water-level changes. Model results indicate that groundwater levels would stop declining if pumpage were stabilized at a constant level. Levels will continue to decline into the foreseeable future, however, as long as groundwater pumpage continues to increase. The source of the additional simulated pumpage is streamflow depletion near pumping locations.

Idaho, Washington↗

USGS2021

Advancements in analytical approaches improve whitebark pine monitoring results

Long-term monitoring programs track the status and trends of species in increasingly vulnerable environments. These monitoring results provide critical information for evaluating, understanding, and managing natural resources. To accurately interpret if and how conditions may be changing for select ecological indicators, it is essential that monitoring programs adopt methods to ensure exceptional data quality. To do this and remain relevant, practitioners need to be flexible and willing to embrace a degree of adaptivity in their protocols. They must periodically re-evaluate their statistical methods and field data collection techniques to provide contemporary, significant, and applicable inferences.

Idaho, Montana, Wyoming↗

USGS2012

One hundred years of volcano monitoring in Hawaii

In 2012 the Hawaiian Volcano Observatory (HVO), the oldest of five volcano observatories in the United States, is commemorating the 100th anniversary of its founding. HVO's location, on the rim of Kilauea volcano (Figure 1)—one of the most active volcanoes on Earth—has provided an unprecedented opportunity over the past century to study processes associated with active volcanism and develop methods for hazards assessment and mitigation. The scientifically and societally important results that have come from 100 years of HVO's existence are the realization of one man's vision of the best way to protect humanity from natural disasters. That vision was a response to an unusually destructive decade that began the twentieth century, a decade that saw almost 200,000 people killed by the effects of earthquakes and volcanic eruptions.

Hawai'i↗

USGS1998

Status of the white-faced ibis: Breeding colony dynamics of the Great Basin population, 1985-1997

The status of the White-faced Ibis (Plegadis chihi) in the Great Basin is of concern because of its small population size and the limited and dynamic nature of its breeding habitat. We analyzed existing annual survey data for the White-faced Ibis breeding in the Great Basin and surrounding area for 1985-1997. Methods varied among colonies and included flight-line counts and fixed-wing aircraft and helicopter surveys. The number of White-faced Ibis breeding pairs in the Great Basin area has nearly tripled since 1985, despite years of severe flooding and drought at major breeding areas. This growth is reflected in both peripheral (i.e., Oregon, California, Idaho) and core (i.e., Nevada and Utah) components of the population. Our data on colony dynamics in Oregon and Nevada illustrate the ability of the highly nomadic White-faced Ibis to compensate for poor conditions at traditional colony sites by moving among colonies and rapidly colonizing newly available wetlands. We suggest that the White-faced Ibis would benefit from a landscape mosaic of well-distributed peripheral wetlands and persistent colony sites. The nomadic nature of the White-faced Ibis and the dynamic nature of their breeding habitat necessitates that wetland management decisions and population monitoring be conducted in a regional context.

Colonial Waterbirds↗

USGS1998

Status of the White-faced Ibis: Breeding colony dynamics of the Great Basin population, 1985-1997

Waterbirds↗

USGS1989

Can we determine the biological availability of sediment-bound trace elements?

It is clear from available data that the susceptibility of biological communities to trace element contamination differs among aquatic environments. One important reason is that the bioavailability of metals in sediments appears to be altered by variations in sediment geochemistry. However, methods for explaining or predicting the effect of sediment geochemistry upon metal bioavailability are poorly developed. Experimental studies demonstrate that ingestion of sediments and uptake from solution may both be important pathways of metal bioaccumulation in deposit/detritus feeding species. Relative importance between the two is geochemistry dependent. Geochemical characteristics of sediments also affect metal concentrations in the tissues of organisms collected from nature, but the specific mechanisms by which these characteristics influence metal bioavailability have not been rigorously demonstrated. Several prerequisites are necessary to better understand the processes that control metal bioavailability from sediments. 1) improved computational or analytical methods for analyzing distribution of metals among components of the sediments; 2) improved computational methods for assessing the influences of metal form in sediments on sediment-water metal exchange; and 3) a better understanding of the processes controlling bioaccumulation of metals from solution and food by metazoan species directly exposed to the sediments. Such capabilities would allow mechanistic explanations essential to the development of practical tools sought for determining sediment quality criteria for metals.

Hydrobiologia↗

USGS1995

National geochronological and natural radioelement data bases

This CD-ROM contains both the National Geochronological Data Base [NGDB] and the Natural Radioelement Data Base [NRDB]. Supporting location, geologic, and reference information is provided for both data bases. The NGDB is a compilation of more than 30,000 individual published Pb-alpha, fission-track, K-Ar, Rb-Sr, U-Th-Pb, and Sm-Nd rock and mineral ages reported on approximately 18,000 dated samples from the United States. A program is provided to search the data files by latitude and longitude, state, analytical method, and age range. The NGDB is provided as quote-comma delimited files that can be entered into most commercial spreadsheet programs. The NRDB gives gamma-ray spectrometric analyses of the natural radioelements (U, Th, and K) for more than 8500 whole-rock samples obtained under the USGS Natural Radioelement Distribution Project. A program is provided to search the data files by state, keyword, U content, Th content, and K content.

Data Series↗

USGS2017

Effects of lateral confinement in natural and leveed reaches of a gravel-bed river: Snake River, Wyoming, USA

This study examined the effects of natural and anthropogenic changes in confining margin width by applying remote sensing techniques – fusing LiDAR topography with image-derived bathymetry – over a large spatial extent: 58 km of the Snake River, Wyoming, USA. Fused digital elevation models from 2007 and 2012 were differenced to quantify changes in the volume of stored sediment, develop morphological sediment budgets, and infer spatial gradients in bed material transport. Our study spanned two similar reaches that were subject to different controls on confining margin width: natural terraces versus artificial levees. Channel planform in reaches with similar slope and confining margin width differed depending on whether the margins were natural or anthropogenic. The effects of tributaries also differed between the two reaches. Generally, the natural reach featured greater confining margin widths and was depositional, whereas artificial lateral constriction in the leveed reach produced a sediment budget that was closer to balanced. Although our remote sensing methods provided topographic data over a large area, net volumetric changes were not statistically significant due to the uncertainty associated with bed elevation estimates. We therefore focused on along-channel spatial differences in bed material transport rather than absolute volumes of sediment. To complement indirect estimates of sediment transport derived by morphological sediment budgeting, we collected field data on bed mobility through a tracer study. Surface and subsurface grain size measurements were combined with bed mobility observations to calculate armoring and dimensionless sediment transport ratios, which indicated that sediment supply exceeded transport capacity in the natural reach and vice versa in the leveed reach. We hypothesize that constriction by levees induced an initial phase of incision and bed armoring. Because levees prevented bank erosion, the channel excavated sediment by migrating rapidly across the restricted braidplain and eroding bars and islands.

Wyoming↗

USGS2002

Atmospheric mercury deposition during the last 270 years: A glacial ice core record of natural and anthropogenic sources

Mercury (Hg) contamination of aquatic ecosystems and subsequent methylmercury bioaccumulation are significant environmental problems of global extent. At regional to global scales, the primary mechanism of Hg contamination is atmospheric Hg transport. Thus, a better understanding of the long-term history of atmospheric Hg cycling and quantification of the sources is critical for assessing the regional and global impact of anthropogenic Hg emissions. Ice cores collected from the Upper Fremont Glacier (UFG), Wyoming, contain a high-resolution record of total atmospheric Hg deposition (ca. 1720−1993). Total Hg in 97 ice-core samples was determined with trace-metal clean handling methods and low-level analytical procedures to reconstruct the first and most comprehensive atmospheric Hg deposition record of its kind yet available from North America. The record indicates major atmospheric releases of both natural and anthropogenic Hg from regional and global sources. Integrated over the past 270-year ice-core history, anthropogenic inputs contributed 52%, volcanic events 6%, and background sources 42%. More significantly, during the last 100 years, anthropogenic sources contributed 70% of the total Hg input. Unlike the 2−7-fold increase observed from preindustrial times (before 1840) to the mid-1980s in sediment-core records, the UFG record indicates a 20-fold increase for the same period. The sediment-core records, however, are in agreement with the last 10 years of this ice-core record, indicating declines in atmospheric Hg deposition.

Environmental Science & Technology↗

USGS1991

A pilot study for delineation of areas contributing water to wellfields at Jackson, Tennessee

The U.S. Geological Survey, in cooperation with the Tennessee Department of Health and Environment, Division of Groundwater Protection, and the Jackson Utility Division, conducted a pilot study to determine data needs and the applicability of four methods for the delineation of wellhead protection areas. Jackson Utility Division in Jackson, Madison County, Tennessee, pumps about 9 million gallons of ground water daily from two municipal wellfields that tap an unconfined sand aquifer. Under natural hydraulic gradients, ground waterflows southward toward the South Wellfield at approximately 2 to 3 feet per day; natural flow toward the North Wellfield from the east at 1 to 2 feet per day. Water quality generally is suitable for most uses. Concentrations of dissolved solids are low, and excessive iron is the only significant naturally occurring water-quality problem. However, trace concentrations of volatile organic compounds have been detected in water pumps from the South Wellfield; the highest concentration of a single compound has been 23 micrograms per liter of tetrachloroethylene. Potential sources of ground-water contamination in the Jackson area include a hazardous-waste site, municipal and industrial landfill, and underground-storage tanks. Some of the four method for delineating wellhead protection areas did not adequately describe zones contributing flow to the wellfields. Calculations based on a uniform flow equation provided a preliminary delineation of zones of contribution for the wellfields and ground-water time-of-travel contours. Limitations of the applied methods motivated the design of a more rigorous hydrogeologic investigation.

Tennessee↗

USGS2013

Development of a reproducible method for determining quantity of water and its configuration in a marsh landscape

Coastal Louisiana is a dynamic and ever-changing landscape. From 1956 to 2010, over 3,734 km 2 of Louisiana's coastal wetlands have been lost due to a combination of natural and human-induced activities. The resulting landscape constitutes a mosaic of conditions from highly deteriorated to relatively stable with intact landmasses. Understanding how and why coastal landscapes change over time is critical to restoration and rehabilitation efforts. Historically, changes in marsh pattern (i.e., size and spatial distribution of marsh landmasses and water bodies) have been distinguished using visual identification by individual researchers. Difficulties associated with this approach include subjective interpretation, uncertain reproducibility, and laborious techniques. In order to minimize these limitations, this study aims to expand existing tools and techniques via a computer-based method, which uses geospatial technologies for determining shifts in landscape patterns. Our method is based on a raster framework and uses landscape statistics to develop conditions and thresholds for a marsh classification scheme. The classification scheme incorporates land and water classified imagery and a two-part classification system: (1) ratio of water to land, and (2) configuration and connectivity of water within wetland landscapes to evaluate changes in marsh patterns. This analysis system can also be used to trace trajectories in landscape patterns through space and time. Overall, our method provides a more automated means of quantifying landscape patterns and may serve as a reliable landscape evaluation tool for future investigations of wetland ecosystem processes in the northern Gulf of Mexico.

Louisiana↗

USGS2004

Development of an AMS method to study oceanic circulation characteristics using cosmogenic 39Ar

Initial experiments at the ATLAS facility [Nucl. Instr. and Meth. B 92 (1994) 241] resulted in a clear detection of cosmogenic 39Ar signal at the natural level. The present paper summarizes the recent developments of 39Ar AMS measurements at ATLAS: the use of an electron cyclotron resonance (ECR) positive ion source equipped with a special quartz liner to reduce 39K background, the development of a gas handling system for small volume argon samples, the acceleration of 39Ar8+ ions to 232 MeV, and the final separation of 39Ar from 39K in a gas-filled spectrograph. The first successful AMS measurements of 39Ar in ocean water samples from the Southern Atlantic ventilation experiment (SAVE) are reported. Published by Elsevier B.V.

Conference Paper↗

USGS1993

Recovery rates of cryptobiotic crusts: inoculant use and assessment methods

Recovery rates of cyanobacterial-lichen soil crusts from disturbance were examined. Plots were either undisturbed or scalped, and scalped plots were either inoculated with surrounding biological crust material or left to recover naturally. Natural recovery rates were found to be very slow. Inoculation significantly hastened recovery for the cyanobacterial/green algal component, lichen cover, lichen species richness, and moss cover. Even with inoculation, however, lichen and moss recovery was minimal. Traditional techniques of assessing recovery visually were found to underestimate time for total recovery. Other techniques, such as extraction of chlorophyll a from surface soil and measurement of sheath material accumulation, were used and are discussed.

Great Basin Naturalist↗

USGS1995

Toxicity and bioaccumulation of sediment-associated contaminants using freshwater invertebrates: A review of methods and applications

This paper reviews recent developments in methods for evaluating the toxicity and bioaccumulation of contaminants associated with freshwater sediments and summarizes example case studies demonstrating the application of these methods. Over the past decade, research has emphasized development of more specific testing procedures for conducting 10-d toxicity tests with the amphipod Hyalella azteca and the midge Chironomus tentans. Toxicity endpoints measured in these tests are survival for H. azteca and survival and growth for C. tentans. Guidance has also been developed for conducting 28-d bioaccumulation tests with the oligochaete Lumbriculus variegatus, including determination of bioaccumulation kinetics for different compound classes. These methods have been applied to a variety of sediments to address issues ranging from site assessments to bioavailability of organic and inorganic contaminants using field-collected and laboratory-spiked samples. Survival and growth of controls routinely meet or exceed test acceptability criteria. Results of laboratory bioaccumulation studies with L. variegatus have been confirmed with comparisons to residues (PCBs, PAHs, DDT) present from synoptically collected field populations of oligochaetes. Additional method development is currently underway to develop chronic toxicity tests and to provide additional data-confirming responses observed in laboratory sediment tests with natural benthic populations.

Environmental Toxicology and Chemistry↗

USGS1975

The orthoenstatite to clinoenstatite transformation by shearing and reversion by annealing: Mechanism and potential applications

Clinoenstatite (CE) was produced by deforming single-crystal specimens of ortho-enstatite (OE) in several different sorta of experiments. Examination with light and trans-mission electron microscopes shows that the transformation is coherent and involves a macroscopic shear on (100) [001] through an angle of 12.8±1.3 °, in good agreement with the theoretically expected value of 13.3 °, and that the transformation is accomplished by glide on (100) of partial dislocations with b = 0.83[001]. Structural analysis provides further insight into the transformation mechanism. Reversion occurs in specimens annealed under a variety of conditions, and thin lamellae of CE in unconstrained, low-strain specimens recover their original shape during transformation back to OE. Our experiments and thermodynamic estimates both suggest that the equilibrium transition temperature is raised roughly 300 ° C per kilobar of shear stress on (100) [001]. This provides the basis of a method by which it may be possible to determine the magnitude as well as the orientation of the principal stresses that produce CE in nature during deformation of enstatite-bearing rocks.

Contributions to Mineralogy and Petrology↗

USGS1989

Correspondence between vegetation and soils in wetlands and nearby uplands

The association between vegetation and soils from a geographically broad sampling of wetlands and adjoining uplands is reported for 38 hydric and 26 nonhydric soils, as recognized in the hydric soils list of the Soil Conservation Service. Wetlands represented in the study include estuaries, pitcher plant bogs, prairie depressional wetlands, and western riparian lands. The agreement between vegetation and soils is clear with few exceptions. In general, hydric soils support hydrophytic plant communities, and nonhydric soils support upland communities. Only 10% of the hydric soils sampled support upland communities and only 15% of the nonhydric soils support wetland communities. Exceptions to the correspondence between vegetation and soils are discussed; local hydrology, the transitional nature of some soils, and other determinants of wetland vegetation structure (e.g., salinity, disturbance) seem to account for many of the observed discrepancies. A method that simplifies the complexity of soils and vegetation cannot be expected to represent accurately all details of their interrelations.

Wetlands↗

USGS2012

Invasive zebra mussels ( Driessena polymorpha ) and Asian clams ( Corbicula fluminea ) survive gut passage of migratory fish species: implications for dispersal

The introduction and spread of invasive species is of great concern to natural resource managers in the United States. To effectively control the spread of these species, managers must be aware of the multitude of dispersal methods used by the organisms. We investigated the potential for survival through the gut of a migrating fish (blue catfish, Ictalurus furcatus ) as a dispersal mechanism for two invasive bivalves: zebra mussel ( Driessena polymorpha ) and Asian clam ( Corbicula fluminea ). Blue catfish (N = 62) were sampled over several months from Sooner Lake, Oklahoma, transported to a laboratory and held in individual tanks for 48 h. All fecal material was collected and inspected for live mussels. Survival was significantly related to water temperature in the lake at the time of collection, with no mussels surviving above 21.1 C°, whereas 12 % of zebra mussels (N = 939) and 39 % of Asian clams (N = 408) consumed in cooler water survived gut passage. This research demonstrates the potential for blue catfish to serve as a dispersal vector for invasive bivalves at low water temperatures.

Biological Invasions↗

USGS2017

Gene transcription patterns in response to low level petroleum contaminants in Mytilus trossulus from field sites and harbors in southcentral Alaska

The 1989 Exxon Valdez oil spill damaged a wide range of natural resources, including intertidal communities, and post-spill studies demonstrated acute and chronic exposure and injury to an array of species. Standard toxicological methods to evaluate petroleum contaminants have assessed tissue burdens, with fewer assays providing indicators of health or physiology, particularly when contaminant levels are low and chronic. Marine mussels are a ubiquitous and crucial component of the nearshore environment, and new genomic technologies exist to quantify molecular responses of individual mussels to stimuli, including exposure to polycyclic aromatic hydrocarbons (PAHs). We used gene-based assays of exposure and physiological function to assess chronic oil contamination using the Pacific blue mussel, Mytilus trossulus . We developed a diagnostic gene transcription panel to investigate exposure to PAHs and other contaminants and its effects on mussel physiology and health. During 2012–2015, we analyzed mussels from five field sites in western Prince William Sound, Alaska, with varying oil histories from the 1989 Exxon Valdez oil spill, and from three boat harbors in the area. Gene transcription patterns of mussels from harbors were consistent with elevated exposure to PAHs or other contaminants, whereas transcription patterns of mussels sampled from shorelines in areas affected by the oil spill indicated no PAH exposure.

Alaska↗