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USGS1989

IRIS/USGS plans for upgrading the Global Seismograph Network

This report has been prepared to provide information to organizations that may be asked to participate in a program to upgrade the global seismographic network. In most cases, the organizations that will be offered new instrumentation by the U.S. Geological Survey currently operate stations in the World-Wide Standardized Seismograph Network (WWSSN) or the Global Digital Seismograph Network (GDSN). The deployment of the WWSSN in the 1960's and the subsequent equipping of some WWSSN stations with digital equipment and borehole seismometers during the 1970's has been a remarkably successful program that generated the high- quality data needed to fuel an unprecedented period of progress in earthquake and tectonic research. The success of the WWSSN can be attributed to the importance of the data, to the strong commitment by participating organizations to international scientific cooperation, to the dedication and skill of the station operators, and to the resourcefulness of the staff supporting the network. Benefits have been widespread. The community of scientists world-wide has benefited from unrestricted access to a standardized base of calibrated data, and the participating stations have benefited from the donation of modern observatory instruments that have been useful for local earthquake studies and for the training of scientists and engineers. Now, an exciting opportunity has arisen to deploy a new generation of seismograph systems to replace the outdated equipment at many of the WWSSN and GDSN stations. The U.S. Geological Survey (USGS) is cooperating with the Incorporated Research Institutions for Seismology (IRIS) in a program to upgrade the global seismograph network. The equipment development phase is nearly complete with a prototype of the new broadband seismograph system currently undergoing final testing at the USGS Albuquerque Seismological Laboratory. Deployment of the new equipment is expected to begin in early 1990. As this report will demonstrate, the IRIS broadband seismograph system combines the very latest data acquisition and computer technology to produce seismic data with unprecedented bandwidth and dynamic range. Moreover, the system has been designed so that the high-quality digital data are accessible for local display and analysis. The functional design of the new system, which uses off-the-shelf modules and a standard computer bus, will make it much easier than it has been in the past to modify and upgrade the data acquisition system as improvements in technology become available. With adequate support for the program, the new IRIS seismograph system need never become obsolete. We want you to be aware of our plans and the possibility that you may be asked to participate in this ,program. The schedule for upgrading WWSSN and GDSN stations depends on the level of funding earmarked for the program by our National Science Foundation. We hope to deploy at least ten new GSN data systems each year. If you have any questions concerning this program, please contact the Albuquerque Seismological Laboratory, U.S. Geological Survey, Albuquerque, New Mexico 87115-5000. This report was revised in February 1992 in order to update information concerning the current program and instrumentation. The amp in Figure 1 was revised in June 1993, April 1994, December 1994, and September 1996 to reflect updated siting information. In September 1996 a composite photo of standard and optional components of the IRIS-2 GSN system hardware was added as a separate page between Figures 9 and 10.

Open-File Report↗

USGS2004

Pesticide concentrations in water and in suspended and bottom sediments in the New and Alamo rivers, Salton Sea Watershed, California, April 2003

This report contains pesticide concentration data for water, and suspended and bed sediment samples collected in April 2003 from twelve sites along the New and Alamo Rivers in the Salton Sea watershed, in southeastern California. The study was done in collaboration with the California State Regional Water Quality Control Board, Colorado River Region, to assess inputs of current-use pesticides associated with water and sediment into the New and Alamo Rivers. Five sites along the New River and seven sites along the Alamo River, downstream of major agricultural drains, were selected and covered the lengths of the rivers from the international boundary to approximately 1.5 km from the river mouths. Sampling from bridges occurred at seven of the twelve sites. At these sites, streamflow measurements were taken. These same sites were also characterized for cross-stream homogeneity by measuring dissolved oxygen, pH, specific conductance, temperature, and suspended solids concentration at several vertical (depths) and horizontal (cross-stream) points across the river. Large volume water samples (200?300 L) were collected for isolation of suspended sediments by flow-through centrifugation. Water from the outflow of the flow-through centrifuge was sampled for the determination of aqueous pesticide concentrations. In addition, bottom sediments were sampled at each site. Current-use pesticides and legacy organochlorine compounds (p,p'-DDT, p,p'-DDE and p,p'-DDD) were extracted from sediments and measured via gas chromatography/mass spectrometry (GC/MS). Organic carbon and percentage of fines were also determined for suspended and bottom sediments. Cross-stream transects of dissolved constituents and suspended sediments showed that the rivers were fairly homogeneous at the sites sampled. Streamflow was higher at the outlet sites, with the Alamo River having higher flow (1,240 cfs) than the New River (798 cfs). Twelve current-use pesticides, one legacy organochlorine compound (p,p'-DDE), and the additive piperonyl butoxide were detected in water samples. Trifluralin was found in the highest concentration of all detected compounds (68.5?599 ng/L) at all sites in both rivers, except for the international boundary sites. Atrazine was also detected in high concentration (51.0?285 ng/L) at several sites. The outlet sites had among the highest numbers of pesticides detected and the international boundary sites had the lowest numbers of pesticides detected for both rivers. The numbers of pesticides detected were greater for the Alamo River than for the New River. Six current-use pesticides and two legacy organochlorines (p,p'-DDE and p,p'-DDD) were found associated with suspended and bed sediments. The DDT metabolite p,p'-DDE was detected in all suspended and bed sediments from the Alamo River, but only at two sites in the New River. Dacthal, chlorpyrifos, pendimethalin, and trifluralin were the most commonly detected current-use pesticides. Trifluralin was the compound found in the highest concentrations in suspended (14.5?120 ng/g) and bed (1.9?9.0 ng/g) sediments. The sites along the Alamo River had more frequent detections of pesticides in suspended and bed sediments when compared with the New River sites. The greatest number of pesticides that were detected in suspended sediments (seven) were in the samples from the Sinclair Road and Harris Road sites. For bottom sediments, the Alamo River outlet site had the greatest number of pesticide detections (eight).

Data Series↗

USGS1974

Geology of quadrangles H-12, H-13, and parts of I-12 and I-13, (zone III) in northeastern Santander Department, Colombia

A program of geologic mapping and mineral investigation in Colombia was undertaken cooperatively by the Colombian Instituto Nacional de Investigaciones Geologico-Mineras (formerly known as the Inventario Minero Nacional), and the U. S. Geological Survey; by the Government of Colombia and the Agency for International Development, U. S. Department of State. The purpose was to study, and evaluate mineral resources (excluding of petroleum, coal, emeralds, and alluvial gold) of four selected areas, designated Zones I to IV, that total about 70,000 km2. The work in Zone III, in the Cordillera Oriental, was done from 1965 to 1968. The northeast trend of the Cordillera Oriental of Colombia swings abruptly to north-northwest in the area of this report, and divides around the southern end of the Maracaibo Basin. This section of the Cordillera Oriental is referred to as the Santander Massif. Radiometric age determinations indicate that the oldest rocks of the Santander massif are Precambrian and include high-grade gneiss, schist, and migmatite of the Bucaramanga Formation. These rocks were probably part of the Precambrian Guayana Shield. Low- to medium-grade metamorphic rocks of late Precambrian to Ordovician age .include phyllite, schist, metasiltstone, metasandstone, and marble of the Silgara Formation, a geosynclinal series of considerable extent in the Cordillera Oriental and possibly the Cordillera de Merida of Venezuela. Orthogneiss ranging from granite to tonalite is widely distributed in the high- and medium-grade metamorphic rocks of the central core of the massif and probably represents rocks of two ages, Precambrian and Ordovician to Early Devonian. Younger orthogneiss and the Silgara are overlain by Middle Devonian beds of the Floresta Formation which show a generally low but varying degree of metamorphism. Phyllite and argillite are common, and infrequent marble and other calcareous beds are fossiliferous. Except for recrystallization in limestones of !the Permian-Carboniferous Diamante Formation, sedimentary rocks younger than Devonian are unmetamorphosed. The effects of Precambrian regional dynamothermal metamorphism and plutonism on Precambrian geosynclinal deposits reached the upper amphibolite facies in the Bucaramanga Gneiss. The geosynclinal Silgara Formation was subjected to similar conditions in Late Ordovician and Early Silurian time but reached only the greenschist or lower amphibolite facies. Orthogneisses generally show a concordance of foliation and lineation with the neighboring Silgara Formation and the Bucaramanga Gneiss as well as similarities in grade of metamorphism. Regional dynamothermal metamorphism in Late Permian and Triassic time reached, low grade in the Floresta Formation and caused recrystallization of limestone of the Diamante Formation. The Bucaramanga and Silgara metamorphic rocks show evidence of metrogressive metamorphism accompanied by high activity or potassium and water, but whether this occurred at the time the Floresta was metamorphosed or later is not clear. Batholiths, plutons, and stocks of igneous rocks in the Santander massif range from diorite to granite. Radioactive age data indicate that most belong to a single plutonic interval. These are referred to as the Santander Plutoniq Group and are Jurassic and Jurassic-Triassic- Two suites of this group are pink granite and quartz monzonite, and gray quartz monzonite and granodiorite. Contact relations indicate that the pink and more granitic rocks are younger than the gray and more mafic rocks, but radioactive age data are in conflict with this. Undated plutonic rocks that are not clearly related to the group are assigned to relatively older or younger age positions. West of the Bucanamanga fault rhyolite makes up a small body at one locality and forms an intrusive sheet with granophyre and intrusive breccias in Triassic sedimentary rocks at another locality. Its age is unknown, but it probably is younger than the

Open-File Report↗

USGS2015

Anatomy of an eradication effort: Removing Hawaii's illegally introduced axis deer

In February 2011, a rancher in the rural southern part of Hawaii Island reported a large mammal on her land. Her call mobilized several agencies led by the Big Island Invasive Species Committee (BIISC), a partnership to prevent, detect, and control the establishment and spread of invasive species, to sit up and take notice. Agency biologists installed camera traps to identify the animal, and a few months later verified the diagnostic field marks of a chervid with spots. The animal in questions was a chital , or axis deer ( Axis axis )--a species native to tropical and subtropical India. Although the deer are abundant on the islands of Molokai, Lānai, and Maui, officials knew they weren't capable of swimming across the notoriously treacherous ʻAlenuihāhā channel, and subsequently suspected human intervention. Soon after the rancher's report, the U.S. Fish and Wildlife Service launched an investigation, which revealed that in December 2009, a helicopter pilot and rancher from Maui had covertly transported four deer in exchange for about a dozen European mouflon sheep ( Ovis gmelini musimon ) (Tummons 2011a, b)--a species also valued for trophies and meat. Because neither species was established in the wild on either of the islands, in June 2012, state lawmakers responded by specifically banning "the international possession or interisland transportation or release of wild or feral deer" (Honolulu Star-Advertiser 2012). The two individuals were prosecuted under the Lacey Act for transporting wildlife between islands with the intent to guide hunting for out-of-state residents (Stephens Media 2012), while the individual who provided the mouflon was sentenced to community service. Further, the helicopter pilot agreed to provide 500 hours of flight time to locate and eradicate the Hawaii Island deer population in restitution.

Hawai'i↗

USGS2012

Surface-water radon-222 distribution along the west-central Florida shelf

In February 2009 and August 2009, the spatial distribution of radon-222 in surface water was mapped along the west-central Florida shelf as collaboration between the Response of Florida Shelf Ecosystems to Climate Change project and a U.S. Geological Survey Mendenhall Research Fellowship project. This report summarizes the surface distribution of radon-222 from two cruises and evaluates potential physical controls on radon-222 fluxes. Radon-222 is an inert gas produced overwhelmingly in sediment and has a short half-life of 3.8 days; activities in surface water ranged between 30 and 170 becquerels per cubic meter. Overall, radon-222 activities were enriched in nearshore surface waters relative to offshore waters. Dilution in offshore waters is expected to be the cause of the low offshore activities. While thermal stratification of the water column during the August survey may explain higher radon-222 activities relative to the February survey, radon-222 activity and integrated surface-water inventories decreased exponentially from the shoreline during both cruises. By estimating radon-222 evasion by wind from nearby buoy data and accounting for internal production from dissolved radium-226, its radiogenic long-lived parent, a simple one-dimensional model was implemented to determine the role that offshore mixing, benthic influx, and decay have on the distribution of excess radon-222 inventories along the west Florida shelf. For multiple statistically based boundary condition scenarios (first quartile, median, third quartile, and maximum radon-222 inshore of 5 kilometers), the cross-shelf mixing rates and average nearshore submarine groundwater discharge (SGD) rates varied from 100.38 to 10-3.4 square kilometers per day and 0.00 to 1.70 centimeters per day, respectively. This dataset and modeling provide the first attempt to assess cross-shelf mixing and SGD on such a large spatial scale. Such estimates help scale up SGD rates that are often made at 1- to 10-meter resolution to a coarser but more regionally applicable scale of 1- to 10-kilometer resolution. More stringent analyses and model evaluation are required, but results and analyses presented in this report provide the foundation for conducting a more rigorous statistical assessment.

Florida↗

USGS2012

U.S. Geological Survey, National Wildlife Health Center, 2011 report of selected wildlife diseases

The National Wildlife Health Center (NWHC) was founded in 1975 to provide technical assistance in identifying, controlling, and preventing wildlife losses from diseases, conduct research to understand the impact of diseases on wildlife populations, and devise methods to more effectively manage these disease threats. The impetus behind the creation of the NWHC was, in part, the catastrophic loss of tens of thousands of waterfowl as a result of an outbreak of duck plague at the Lake Andes National Wildlife Refuge in South Dakota during January 1973. In 1996, the NWHC, along with other Department of Interior research functions, was transferred from the U.S. Fish and Wildlife Service to the U.S. Geological Survey (USGS), where we remain one of many entities that provide the independent science that forms the bases of the sound management of the Nation’s natural resources. Our mission is to provide national leadership to safeguard wildlife and ecosystem health through dynamic partnerships and exceptional science. The main campus of the NWHC is located in Madison, Wis., where we maintain biological safety level 3 (BSL–3) diagnostic and research facilities purposefully designed for work with wildlife species. The NWHC provides research and technical assistance on wildlife health issues to State, Federal, and international agencies. In addition, since 1992 we have maintained a field station in Hawaii, the Honolulu Field Station, which focuses on marine and terrestrial natural resources throughout the Pacific region. The NWHC conducts diagnostic investigations of unusual wildlife morbidity and mortality events nationwide to detect the presence of wildlife pathogens and determine the cause of death. This is also an important activity for detecting new, emerging and resurging diseases. The NWHC provides this crucial information on the presence of wildlife diseases to wildlife managers to support sound management decisions. The data and information generated also allows for further indepth analyses for determining the biological and ecological significance of disease events, detecting disease trends over time and space, as well as detecting any significant changes to how diseases manifest in the field. Moreover, this information allows us to gain insight into the significance of future wildlife disease events. The purpose of this report is to provide a sample of NWHC data that are available from our Laboratory Information Management System (LIMS). These data are presented in summary format with minimal statistical analysis and interpretation. The goal is to share these data with wildlife managers and other stakeholders, promote the use of NHWC data, and encourage the sharing of wildlife disease data to improve temporal and geographic surveillance coverage. Continued national surveillance for wildlife diseases is essential for providing early detection and warning of events that have the potential to result in harm to human health, economic losses, declines in wildlife populations, and subsequent ecological disturbances. Increased collaboration, coordination, and sharing of surveillance data will enhance this Nation’s ability to detect and respond to wildlife disease threats.

Scientific Investigations Report↗

USGS2010

Groundwater flow systems at the Nevada Test Site, Nevada: A synthesis of potentiometric contours, hydrostratigraphy, and geologic structures

Contaminants introduced into the subsurface of the Nevada Test Site by underground nuclear testing are of concern to the U.S. Department of Energy and regulators responsible for protecting human health and safety. The potential for contaminant movement away from the underground test areas and into the accessible environment is greatest by groundwater transport. The primary hydrologic control on this transport is evaluated and examined through a series of contour maps developed to represent the hydraulic-head distribution within each of the major aquifers underlying the area. Aquifers were identified and their extents delineated by merging and analyzing multiple hydrostratigraphic framework models developed by other investigators from existing geologic information. A map of the hydraulic-head distribution in each major aquifer was developed from a detailed evaluation and assessment of available water-level measurements. Multiple spreadsheets that accompany this report provide pertinent water-level and geologic data by well or drill hole. Aquifers are mapped and discussed in general terms as being one of two types: alluvial–volcanic, or carbonate. Both aquifer types are subdivided and mapped as independent regional and local aquifers, based on the continuity of their component rock. Groundwater-flow directions, approximated from potentiometric contours that were developed from the hydraulic-head distribution, are indicated on the maps and discussed for each of the regional aquifers and for selected local aquifers. Hydraulic heads vary across the study area and are interpreted to range in altitude from greater than 5,000 feet in a regional alluvial–volcanic aquifer beneath a recharge area in the northern part of the study area to less than 2,300 feet in regional alluvial–volcanic and carbonate aquifers in the southwestern part of the study area. Flow directions throughout the study area are dominantly south-southwest with some local deviations. Vertical hydraulic gradients between aquifer types are downward throughout most of the study area; however, flow from the alluvial–volcanic aquifer into the underlying carbonate aquifer, where both aquifers are present, is believed to be minor because of an intervening confining unit. Limited exchange of water between aquifer types occurs by diffuse flow through the confining unit, by focused flow along fault planes, or by direct flow where the confining unit is locally absent. Interflow between regional aquifers is evaluated and mapped to define major flow paths. These flow paths delineate tributary flow systems, which converge to form intermediate and regional flow systems. The implications of these flow systems in controlling transport of radionuclides away from the underground test areas at the Nevada Test Site are briefly discussed. Additionally, uncertainties in the delineation of aquifers, the development of potentiometric contours, and the identification of flow systems are identified and evaluated. Eleven tributary flow systems and three larger flow systems are mapped in the Nevada Test Site area. Flow systems within the alluvial–volcanic aquifer dominate the western half of the study area, whereas flow systems within the carbonate aquifer are most prevalent in the southeastern half of the study area. Most of the flow in the regional alluvial–volcanic aquifer that moves through the underground testing area on Pahute Mesa is discharged to the land surface at springs and seeps in Oasis Valley. Flow in the regional carbonate aquifer is internally compartmentalized by major geologic structures, primarily thrust faults, which constrain flow into separate corridors. Contaminants that reach the regional carbonate aquifer from testing areas in Yucca and Frenchman Flats flow toward downgradient discharge areas through the Alkali Flat–Furnace Creek Ranch or Ash Meadows flow systems and their tributaries.

Nevada↗

USGS2019

Improving pressure-limited CO2 storage capacity in saline formations by means of brine extraction

The carbon dioxide (CO 2 ) storage capacity of saline formations may be constrained by reservoir pressure limitations. Brine extraction could be necessary to increase the CO 2 storage capacity of a given formation, manage the extent of the underground CO 2 plume and induced pressure front, and control the migration direction. To estimate the additional CO 2 storage capacity of a saline formation that can be made accessible by extraction of in-situ brines, a three-dimensional (3D) generic cubic cell containing one CO 2 injector in the middle surrounded by four brine extractors at each corner of the cell was assumed. A series of Tough2-ECO2N reservoir simulations were constructed with varying reservoir properties and run. Based on a series of scenarios, a mechanism was developed and demonstrated that resulted in derivation of a function to provide estimates of the ratio of total CO 2 injection over the brine extraction rate for a given scenario. We selected multiple saline formations in U.S. basins and evaluated the potential to increase the combined dynamic CO 2 storage capacity of the selected saline formations to over 1000 million metric tonnes per year (Mt/yr) of CO 2 for 100 years by means of brine extraction. Such storage capacities may be adequate to accommodate the CO 2 injection rates suggested for the United States under a “beyond two-degree Celsius scenario” (B2DS) that has been proposed to maintain global temperature rise to less than 2°C above pre-industrial reported levels. The results suggest that B2DS goals could be achieved with a volume ratio of brine extraction to CO 2 injection as low as 1:4, which is far lower than the ratios that have been commonly assumed in the literature.

International Journal of Greenhouse Gas Control↗

USGS2016

On the importance of stratigraphic control for vertebrate fossil sites in Channel Islands National Park, California, USA: Examples from new Mammuthus finds on San Miguel Island

Quaternary vertebrate fossils, most notably mammoth remains, are relatively common on the northern Channel Islands of California. Well-preserved cranial, dental, and appendicular elements of Mammuthus exilis (pygmy mammoth) and Mammuthus columbi (Columbian mammoth) have been recovered from hundreds of localities on the islands during the past half-century or more. Despite this paleontological wealth, the geologic context of the fossils is described in the published literature only briefly or not at all, which has hampered the interpretation of associated 14 C ages and reconstruction of past environmental conditions. We recently discovered a partial tusk, several large bones, and a tooth enamel plate (all likely mammoth) at two sites on the northwest flank of San Miguel Island, California. At both localities, we documented the stratigraphic context of the fossils, described the host sediments in detail, and collected charcoal and terrestrial gastropod shells for radiocarbon dating. The resulting 14 C ages indicate that the mammoths were present on San Miguel Island between ∼20 and 17 ka as well as between ∼14 and 13 ka (thousands of calibrated 14 C years before present), similar to other mammoth sites on San Miguel, Santa Cruz, and Santa Rosa Islands. In addition to documenting the geologic context and ages of the fossils, we present a series of protocols for documenting and reporting geologic and stratigraphic information at fossil sites on the California Channel Islands in general, and in Channel Islands National Park in particular, so that pertinent information is collected prior to excavation of vertebrate materials, thus maximizing their scientific value.

California↗

USGS2010

Active shoreline of Ontario Lacus, Titan: A morphological study of the lake and its surroundings

Of more than 400 filled lakes now identified on Titan, the first and largest reported in the southern latitudes is Ontario Lacus, which is dark in both infrared and microwave. Here we describe recent observations including synthetic aperture radar (SAR) images by Cassini's radar instrument (??= 2 cm) and show morphological evidence for active material transport and erosion. Ontario Lacus lies in a shallow depression, with greater relief on the southwestern shore and a gently sloping, possibly wave-generated beach to the northeast. The lake has a closed internal drainage system fed by Earth-like rivers, deltas and alluvial fans. Evidence for active shoreline processes, including the wave-modified lakefront and deltaic deposition, indicates that Ontario is a dynamic feature undergoing typical terrestrial forms of littoral modification. Copyright ?? 2010 by the American Geophysical Union.

Geophysical Research Letters↗

USGS1997

On the origin of diverse aftershock mechanisms following the 1989 Loma Prieta earthquake

We test the hypothesis that the origin at the diverse suite of aftershock mechanisms Following the 1989 M 7.1 Loma Prieta, California, earthquake is related to the post-main-shock static stress field We use a 3-D boundary-element algorithm to calculate static stresses combined with a Coulomb failure criterion to calculate conjugate failure planes at aftershock locations. The post-main-shock static stress field is taken as the of a sum of a pre-existing stress field and changes in stress due to the heterogeneous slip across the Loma Prieta rupture plane. The background stress field is assumed to be either a simple shear parallel to the regional trend of the San Andreas fault or approximately fault-normal compression A suite of synthetic aftershock mechanisms from the conjugate failure planes is generated and quantitatively compared (allowing for uncertainties in both mechanism parameters and earthquake locations) to well-constrained mechanisms reported in the US Geological Survey Northern California Seismic Network catalogue. We also compare calculated rakes with those observed by resolving the calculated stress tensor onto observed focal mechanism nodal planes, assuming either plane to be a likely rupture plane.

Geophysical Journal International↗

USGS2014

Identifying resource manager information needs for the North Pacific Landscape Conservation Cooperative

Landscape Conservation Cooperatives (LCCs) are a network of 22 public-private partnerships, defined by ecoregion, that share and provide science to ensure the sustainability of land, water, wildlife and cultural resources in North America. LLCs were established by the U.S. Department of Interior (DOI) in recognition that response to climate change must be coordinated on a landscape-level basis because important resources, ecosystem processes and resource management challenges extend beyond national wildlife refuges, Bureau of Land Management lands, national parks, and even international boundaries. Therefore, DOI agencies must work with other Federal, State, Tribal (U.S. indigenous peoples), First Nation (Canadian indigenous peoples), and local governments, as well as private landowners, to develop landscape-level strategies for understanding and responding to climate change.

Alaska;British Columbia;California;Oregon;Washingt↗

USGS1997

A manual for a laboratory information management system (LIMS) for light stable isotopes

The reliability and accuracy of isotopic data can be improved by utilizing database software to (i) store information about samples, (ii) store the results of mass spectrometric isotope-ratio analyses of samples, (iii) calculate analytical results using standardized algorithms stored in a database, (iv) normalize stable isotopic data to international scales using isotopic reference materials, and (v) generate multi-sheet paper templates for convenient sample loading of automated mass-spectrometer sample preparation manifolds. Such a database program is presented herein. Major benefits of this system include (i) an increase in laboratory efficiency, (ii) reduction in the use of paper, (iii) reduction in workload due to the elimination or reduction of retyping of data by laboratory personnel, and (iv) decreased errors in data reported to sample submitters. Such a database provides a complete record of when and how often laboratory reference materials have been analyzed and provides a record of what correction factors have been used through time. It provides an audit trail for stable isotope laboratories. Since the original publication of the manual for LIMS for Light Stable Isotopes, the isotopes 3 H, 3 He, and 14 C, and the chlorofluorocarbons (CFCs), CFC-11, CFC-12, and CFC-113, have been added to this program.

Open-File Report↗

USGS1998

A manual for a Laboratory Information Management System (LIMS) for light stable isotopes

Open-File Report↗

USGS2006

Geoinformatics 2006--Abstracts

In order to facilitate the discovery, integration, and analysis of distributed data, geoscientists-in partnership with information technologists and computer scientists-have established the emerging science of geoinformatics. Geoinformatics 2006, an international conference that was attended by over 300 participants between May 10 and 12, 2006, represents the first nationally organized meeting whose primary goal was to provide a forum for the exchange of the most current research in geoinformatics.

Scientific Investigations Report↗

USGS2011

Sedimentology and reservoir heterogeneity of a valley-fill deposit– A field guide to the Dakota Sandstone of the San Rafael Swell, Utah

Valley-fill deposits form a significant class of hydrocarbon reservoirs in many basins of the world. Maximizing recovery of fluids from these reservoirs requires an understanding of the scales of fluid-flow heterogeneity present within the valley-fill system. The Upper Cretaceous Dakota Sandstone in the San Rafael Swell, Utah contains well exposed, relatively accessible outcrops that allow a unique view of the external geometry and internal complexity of a set of rocks interpreted to be deposits of an incised valley fill. These units can be traced on outcrop for tens of miles, and individual sandstone bodies are exposed in three dimensions because of modern erosion in side canyons in a semiarid setting and by exhumation of the overlying, easily erodible Mancos Shale. The Dakota consists of two major units: (1) a lower amalgamated sandstone facies dominated by large-scale cross stratification with several individual sandstone bodies ranging in thickness from 8 to 28 feet, ranging in width from 115 to 150 feet, and having lengths as much as 5,000 feet, and (2) an upper facies composed of numerous mud-encased lenticular sandstones, dominated by ripple-scale lamination, in bedsets ranging in thickness from 5 to 12 feet. The lower facies is interpreted to be fluvial, probably of mainly braided stream origin that exhibits multiple incisions amalgamated into a complex sandstone body. The upper facies has lower energy, probably anastomosed channels encased within alluvial and coastal-plain floodplain sediments. The Dakota valley-fill complex has multiple scales of heterogeneity that could affect fluid flow in similar oil and gas subsurface reservoirs. The largest scale heterogeneity is at the formation level, where the valley-fill complex is sealed within overlying and underlying units. Within the valley-fill complex, there are heterogeneities between individual sandstone bodies, and at the smallest scale, internal heterogeneities within the bodies themselves. These different scales of fluid-flow compartmentalization present a challenge to hydrocarbon exploration targeting paleovalley deposits, and producing fields containing these types of reservoirs may have significant bypassed pay, especially where well spacing is large.

Utah↗

USGS2014

A new clarification method to visualize biliary degeneration during liver metamorphosis in sea lamprey ( Petromyzon marinus )

Biliary atresia is a rare disease of infancy, with an estimated 1 in 15,000 frequency in the southeast United States, but more common in East Asian countries, with a reported frequency of 1 in 5,000 in Taiwan. Although much is known about the management of biliary atresia, its pathogenesis is still elusive. The sea lamprey ( Petromyzon marinus ) provides a unique opportunity to examine the mechanism and progression of biliary degeneration. Sea lamprey develop through three distinct life stages: larval, parasitic, and adult. During the transition from larvae to parasitic juvenile, sea lamprey undergo metamorphosis with dramatic reorganization and remodeling in external morphology and internal organs. In the liver, the entire biliary system is lost, including the gall bladder and the biliary tree. A newly-developed method called “CLARITY” was modified to clarify the entire liver and the junction with the intestine in metamorphic sea lamprey. The process of biliary degeneration was visualized and discerned during sea lamprey metamorphosis by using laser scanning confocal microscopy. This method provides a powerful tool to study biliary atresia in a unique animal model.

Journal of Visualized Experiments↗

USGS2022

A channel sampling strategy for measurement of mineral modal and chemical composition of drill cores: Application to lower oceanic crustal rocks from IODP Expedition 345 to the Hess Deep rift

We report a new sampling strategy for collecting representative samples of drill core. By splitting the core with a diamond saw into working and archive halves, the saw cuttings constitute a “channel” sample, the best subsample from which to obtain an average mineralogical and geochemical composition of a core. We apply this procedure to sampling core of the lower oceanic crust in the Hess Deep obtained during Expedition 345 of the Integrated Ocean Drilling Program (now International Ocean Discovery Program). Our results show that particles produced by sawing range from sand to clay sizes. Sand- and silt-sized cuttings can be sampled with a spatula, whereas clay-sized particles remained in suspension after 12 h and could be collected only by settling, aided by centrifuge. X-ray diffraction (XRD) analysis and Rietveld refinement show that phyllosilicates were fractionated into the clay-sized fraction. Thus, collection of both the sedimented fraction and the clay-sized suspended fraction (commonly > 15 wt % of the total) is necessary to capture the whole sample. The strong positive correlation between the recovered sample mass (in grams) and length of core cut demonstrates that this sampling protocol was uniform and systematic, with almost 1.4 g sediment produced per centimeter of core cut. We show that major-element concentrations of our channel samples compare favorably with the compositions of billet-sized samples analyzed aboard the JOIDES Resolution , but the results show that individual billet analyses are rarely representative of the whole core recovered. A final test of the validity of our methods comes from the strong positive correlation between the loss on ignition (LOI) values of our channel samples and the H 2 O contents calculated from the modal mineralogy obtained by X-ray diffraction and Rietveld refinement. This sampling procedure shows that grain-sized fractionation modifies both mineralogical and chemical compositions; nevertheless, this channel sampling method is a reliable method of obtaining representative samples of bulk cores. With the ever-increasing precision offered by modern analytical instrumentation, this sampling protocol allows the accuracy of the analytical results to keep pace.

Scientific Drilling↗