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USGS1986

Scale-dependent correlation of seabirds with schooling fish in a coastal ecosystem

The distribution of piscivorous seabirds relative to schooling fish was investigated by repeated censusing of 2 intersecting transects in the Avalon Channel, which carries the Labrador Current southward along the east coast of Newfoundland. Murres (primarily common murres Uria aalge ), Atlantic puffins Fratercula arctica , and schooling fish (primarily capelin Mallotus villosus ) were highly aggregated at spatial scales ranging from 0.25 to 15 km. Patchiness of murres, puffins and schooling fish was scale-dependent, as indicated by significantly higher variance-to-mean ratios at large measurement distances than at the minimum distance, 0.25 km. Patch scale of puffins ranged from 2.5 to 15 km, of murres from 3 to 8.75 km, and of schooling fish from 1.25 to 15 km. Patch scale of birds and schooling fish was similar m 6 out of 9 comparisons. Correlation between seabirds and schooling birds was significant at the minimum measurement distance in 6 out of 12 comparisons. Correlation was scale-dependent, as indicated by significantly higher coefficients at large measurement distances than at the minimum distance. Tracking scale, as indicated by the maximum significant correlation between birds and schooling fish, ranged from 2 to 6 km. Our analysis showed that extended aggregations of seabirds are associated with extended aggregations of schooling fish and that correlation of these marine carnivores with their prey is scale-dependent.

Newfoundland↗

USGS1991

The distribution of seabirds and fish in relation to ocean currents in the southeastern Chukchi Sea

In late August 1988, we studied the distribution of seabirds in the southeastern Chukchi Sea, particularly in waters near a major seabird colony at Cape Thompson. Foraging areas were characterized using hydrographic data obtained from hydroacoustic surveys for fish. Murres ( Uria spp. ) and Black-legged Kitttiwakes Rissa tridactyla breeding at Cape Thompson fed mostly on Arctic cod, which are known from previous studies to be the most abundant pelagic fish in the region. Our hydroacoustic surveys revealed that pelagic fish were distributed widely, but densities were estimated to be low (e.g., 0.1-10 g∙m -3 ) throughout the study area and a few schools were recorded. Large feeding flocks of murres and kittiwakes were observed over fish schools with densities estimated to exceed 15 g∙m -3 . Fish densities were higher in shallow Alaska Coastal Current waters than offshore in Bering Sea waters, and most piscivorous seabirds foraged in coastal waters. Poor kittiwake breeding success and a low frequency of fish in murre and kittiwake stomachs in late August suggested that fish densities were marginal for sustaining breeding seabirds at that time. Planktivorous Least Auklets Aethia pusilla and Parakeet Auklets Cyclorrhynchus psittacula foraged almost exclusively in Bering Sea waters. Short-tailed Shearwaters Puffinus tenuirostris and Tufted Puffins Fratercula cirrhata foraged in transitional waters at the front between Coastal and Bering Sea currents.

Alaska↗

USGS2013

Report A: Fish distribution and population dynamics in Rock Creek, Klickitat County, Washington

The U.S. Geological Survey collaborated with the Yakama Nation starting in fall of 2009 to study the fish populations in Rock Creek, a Washington State tributary of the Columbia River 21 kilometers upstream of John Day Dam. Prior to this study, very little was known about the ESA-listed (threatened) Mid-Columbia River steelhead (Oncorhynchus mykiss) population in this arid watershed with intermittent stream flow. The objectives of the study were to quantify fish habitat, document fish distribution, abundance, and movement, and identify areas of high salmonid productivity. To accomplish these objectives, we electrofished in the spring and fall, documenting the distribution and relative abundance of all fish species to evaluate the influence of biotic factors on salmonid productivity and survival. We surveyed the distribution of perennial pools and established a network of automated temperature recording devices from river kilometer (rkm) 2 to 23 in Rock Creek and rkm 0 to 8 in Squaw Creek, a major tributary entering Rock Creek at rkm 13, to better understand the abiotic factors influencing the salmonid populations. Salmonid abundance estimates were conducted using a mark-recapture method in a systematic subsample of the perennial pools. The proportion and timing of salmonids migrating from these pools were assessed by building, installing, and operating two passive integrated transponder (PIT) tag interrogation systems at rkm 5 and at the confluence with Squaw Creek (rkm 13). From fall 2009 to fall 2012, we PIT-tagged 3,088 O. mykiss and 151 coho salmon (O. kisutch) during electrofishing efforts. In the lowest flow periods of 2010 to 2012, we found that an average of 36% of the surveyed streambed length was dry, and 17% remained as perennial pools. The maximum temperature recorded in those pools was 24.4°C, but most pools had a maximum temperature that was less than 21°C. O. mykiss were present in most pools, and non-native fish species, such as smallmouth bass (Micropterus dolomieu), were typically found downstream of rkm 5. Coho salmon were present in nearly every pool that was sampled in 2011, but were rare in 2009, 2010, and 2012. About 27% of the PIT-tagged O. mykiss and 38% of the PIT-tagged coho were detected outmigrating to the Columbia River. Of those fish, 92% (n=695) were detected leaving Rock Creek as smolts in April and May. As of November 2013, 9 O. mykiss and 4 coho that we tagged in Rock Creek as juveniles have returned as adults to Bonneville Dam. Also, an additional 34 PIT-tagged adult steelhead, and 6 PIT-tagged coho that were tagged by other groups have been detected in Rock Creek, of which, 22 were of known origin (tagged as juveniles). Of these, 85% were tagged or released in the Snake River. The PIT-tag interrogation systems will be operated for several more years to allow time for the fish tagged as juveniles to return as adults and complete their life cycles. The Yakama Nation will use the information collected from this study to prioritize and gauge the effectiveness of ongoing and future restoration actions.

Washington↗

USGS2017

Contaminants of emerging concern in the Great Lakes Basin: A report on sediment, water, and fish tissue chemistry collected in 2010-2012

Despite being detected at low levels in surface waters and sediments across the United States, contaminants of emerging concern (CECs) in the Great Lakes Basin are not well characterized in terms of spatial and temporal occurrence. Additionally, although the detrimental effects of exposure to CECs on fish and wildlife have been documented for many CECs in laboratory studies, we do not adequately understand the implications of the presence of CECs in the environment. Based on limited studies using current environmentally relevant concentrations of chemicals, however, risks to fish and wildlife are evident. As a result, there is an increasing urgency to address data gaps that are vital to resource management decisions. The U.S. Fish and Wildlife Service, in collaboration with the U.S. Geological Survey, is leading a Great Lakes Basin-wide evaluation of CECs (CEC Project) with the objectives to (a) characterize the spatial and temporal distribution of CECs; (b) evaluate risks to fish and wildlife resources; and (c) develop tools to aid resource managers in detecting, averting, or minimizing the ecological consequences to fish and wildlife that are exposed to CECs. This report addresses objective (a) of the CEC Project, summarizing sediment and water chemistry data collected from 2010 to 2012 and fish liver tissue chemistry data collected in 2012; characterizes the sampling locations with respect to potential sources of CECs in the landscape; and provides an initial interpretation of the variation in CEC concentrations relative to the identified sources. Data collected during the first three years of our study, which included 12 sampling locations and analysis of 134 chemicals, indicate that contaminants were more frequently detected in sediment compared to water. Chemicals classified as alkyphenols, flavors/ fragrances, hormones, PAHs, and sterols had higher average detection frequencies in sediment compared to water, while the opposite was observed for pesticides, pharmaceuticals, and plasticizers/flame retardants. The St. Louis River and Maumee River sampling locations had the most CEC detections in water and sediment, relative to other sites, as well as the largest number of maximum detected concentrations across all sites in the Basin. No consistent temporal CEC occurrence patterns were observed at locations sampled multiple times each day. Most appearances and increases in chemical concentrations in sediments occurred at sites immediately downstream from wastewater treatment plants and at sites with predominantly developed land use. The location with the most observed appearances and increases was the St. Louis River. Perfluorinated compounds were commonly detected in fish liver tissues with detections in 100% of both benthic and pelagic species. The occurrence of these chemicals in liver tissue of benthic and pelagic species was generally similar. Abstract

Great Lakes Basin↗

USGS2017

Trawl-based assessment of Lake Ontario pelagic prey fishes including Alewife and Rainbow Smelt

Managing Lake Ontario fisheries in an ecosystem-context, requires reliable data on the status and trends of prey fishes that support predator populations. We report on the community and population dynamics of Lake Ontario pelagic prey fishes, based on bottom trawl surveys. We emphasize information that supports the international Lake Ontario Committee’s Fish Community Objectives. In 2016, 142 bottom trawls were collected in U.S. waters, and for the first time 46 trawls were conducted in Canadian waters. A total of 420,386 fish from 24 species were captured. Alewife were 89% of the total fish catch and 93% of the pelagic prey fish catch. The Rainbow Smelt abundance index in U.S. waters increased slightly in 2016 relative to 2015. Interestingly, the Rainbow Smelt abundance index from tows in Canadian waters was 35% higher than the U.S. index. Abundances of Threespine Stickleback and Emerald Shiners in both U.S. and Canadian waters were low in 2016 relative to their peak abundances in the late 1990s, but Cisco abundance indices suggest a recent increase in their abundance. This year, the reported Alewife abundance time series was truncated to only include values since 1997, which were collected with the same trawl and eliminated the need to adjust values for different trawls. The 2016 adult Alewife abundance index was the second lowest abundance ever observed in the time series. This value was expected to decline from the 2015 value since the indices of juvenile Alewife were low in 2014 and the lowest ever observed in 2015. The fall condition index of adult Alewife increased in 2016 and is consistent with lower abundance and reduced competition for zooplankton resources. The 2016 Age-1 Alewife index increased relative to 2014 and 2015, and suggested lake conditions were favorable for Age-1 survival and growth during the summer of 2015 and the 2015-2016 winter. Interestingly, the catch of adult and Age1 Alewife was higher in trawls conducted in Canadian waters relative to U. S. waters. The larger trawl catches in Canadian waters suggest there may be important spatial differences in lake-wide distribution of prey fishes in April when trawling is conducted. Future surveys should to continue to sample at the whole-lake scale to understand the year to year variability in spatial distribution and the physical or biotic factors driving those distribution differences.

Report↗

USGS1994

Instream flows to assist the recovery of endangered fishes of the upper Colorado River basin

The riverine landscape of the upper Colorado River basin has been extensively modified by dams, diversions, revetments, and water abstractions. These changes, probably coupled with the introduction of many nonnative fishes, have compromised the existence of four of the native fishes (Colorado River squawfish Ptychocheilus lucius, humpback chub Gila cypha, bonytail chub Gila elegans, and razorback sucker Xyrauchen texanus) of the river system. Efforts to recover these endangered fishes have emphasized reregulation of flows to provide better habitat conditions than existed during the last half century, when ranges and abundances of the fishes declined significantly. Contention emerged, however, with regard to the efficacy of methods used by the U.S. Fish and Wildlife Service to justify flow recommendations to protect the endangered fishes. The purpose of this study was to review the science pertaining to the issue of flow provision, to identify critical uncertainties, and to provide recommendations for determining the instream flow needs of the endangered fishes.

Biological Report↗

USGS2020

Predictive relations between acid-base chemistry and fish assemblages in streams of the Adirondack Mountains

Surface waters across much of New York State’s Adirondack Mountains were acidified in the late 20th century but began to recover following the 1990 Title IV Amendments to the Clean Air Act. Previous assessments of acidification recovery in the Adirondacks have generally been based on surface water chemistry data and inferred relationships to fish and other aquatic biota. Little data, however, has been available to characterize biological impacts and predict recovery of fish assemblages in streams of the region. Here, we use quantitative fish surveys combined with chemistry data from 48 headwater streams sampled during summer 2014–2016 to develop logistic (probability) models that characterize the status of contemporary fish assemblages and predict how different N and S deposition loads may affect future fish assemblages. Statistical models for inorganic aluminum (Al i ) and richness ≥1 species; and for acid neutralizing capacity (ANC) and total density >400 fish/0.1 ha, total biomass >1500 g/0.1 ha, brook trout Salvelinus fontinalis density >0 or >200 fish/0.1 ha, and brook trout biomass >1000 g/0.1 ha were suitable for evaluating community and population responses to changes in acid-base chemistry. Predictions of fish-assemblage responses using several of these models demonstrated that anticipated changes in national (U.S.) secondary standards for atmospheric emissions of NO x and SO x to achieve target N and S deposition loads are likely to alter the acid-base chemistry and the probabilities of observing various levels of brook trout population and fish-community metrics in streams across the region and elsewhere.

New York↗

USGS2021

Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2020

Lakewide acoustic (AC) and bottom trawl (BT) surveys are conducted annually to generate indices of pelagic and benthic prey fish densities in Lake Michigan. The BT survey had been conducted each fall from 1973 through 2019 using 12-m trawls at depths ranging from 9 to 110 m and included 70 fixed locations distributed across seven transects; this survey estimates densities of seven prey fish species (i.e., alewife, bloater, rainbow smelt, deepwater sculpin, slimy sculpin, round goby, ninespine stickleback) as well as for age-0 yellow perch and large burbot. The AC survey, which serves to estimate densities of three prey fish species (i.e., alewife, bloater, and rainbow smelt), had been conducted each late summer/early fall from 2004-2019. The data generated from these surveys are used to estimate various population parameters that are, in turn, used by state and tribal agencies in managing Lake Michigan fish stocks. The 2020 COVID-19 pandemic severely limited the Lake Michigan pelagic and benthic prey fish surveys. While the AC survey was not conducted, 32 tows across three of seven standard BT transects (Saugatuck, Waukegan and Port Washington) were completed during an abbreviated survey. Total prey fish biomass density from the abbreviated BT survey was 1.91 kg/ha, continuing a recent trend of historically low estimates below the long-term (i.e., 1973-2020) average of 34.94 kg/ha. Mean biomass of yearling and older (YAO) alewives in 2020 was 0.025 ± 0.017 kg/ha, tied for the lowest ever recorded on the BT survey. No age-0 alewife were captured in the bottom trawl and of the limited number (n=16) of alewife collected, none were older than age four. Bloater (1.39 kg/ha) and deepwater sculpin (0.47 kg/ha) accounted for greatest proportion of biomass in the BT survey, while biomass density of slimy sculpin, round goby and rainbow smelt were all ≤ 0.01 kg/ha. While caution must be taken when interpreting the results of the abbreviated BT survey, the estimates suggest that prey fish densities remain well below historical values.

Lake Michigan↗

USGS2021

Monitoring the recovery of seabirds and forage fish following a major ecosystem disruption in Lower Cook Inlet

Following the North Pacific marine heatwave of 2014-2016 and associated extreme die-off of seabirds in the winter of 2015-2016, we repeated historical marine bird and forage fish surveys around two seabird colonies (Gull Island, Chisik Island) in lower Cook Inlet during 2016-2019 in order to document immediate and lingering impacts of the heatwave on resident fish and seabird populations. At sea, we conducted acoustic/trawl surveys for fish in near-colony areas, while simultaneously counting seabirds on survey transects. At colonies, we monitored bird numbers on whole colony censuses and population plot counts and assessed annual reproductive success of Black-legged Kittiwakes ( Rissa tridactyla ) and Common Murres ( Uria aalge ). Our studies suggest that impacts of the heatwave on seabirds and their forage base were severe and extended for several years beyond the heatwave itself. Although fish biomass indices were greatest in 2016-2017, the forage community was largely dominated by juvenile fish with low nutritional value following a collapse of key species of forage fish during the marine heatwave. Lowest fish biomass was observed in 2018, coincident with a marked decline in the at-sea abundance of many seabirds around colonies. By 2019 there were signs of improvement in prey abundance and quality, and significant aggregations of pre-spawning capelin and large sand lance were observed in and around Kachemak Bay. In comparison with historical (1996-1999) bird colony surveys, kittiwake population counts decreased by more than 70% at Chisik Island, and by 8-29% at Gull Island. Similarly, murre counts decreased at Chisik Island by 72% and by more than 20% at Gull Island. Kittiwakes had complete reproductive failure at Chisik Island from 2016-2018, with minimal success in 2019. At Gull Island, kittiwakes also failed in 2016 and 2018 but had unusually high productivity in 2017 and 2019. Murres also had complete reproductive failures at Chisik Island in all four years and at Gull Island during 2016, 2017 and 2018. Murres finally fledged chicks in 2019, albeit at about half the normal rate. Finally, we also observed unusually high levels of predator disturbance (egg predation, flushing adults from plots) and unprecedented numbers of adult birds in poor body condition (“skinny murres”), particularly in 2018. Together, these results indicate that an extreme disruption of marine food webs occurred during and after the heatwave. Given the prolonged reproductive failures, continued monitoring is required to assess continuing impacts and recovery from the 2014-2016 heatwave. For example, murre chicks that would have been produced in 2016 should, after 4-5 years away, start recruiting to the colony in 2021, and thereby replace aged adults that would have died naturally in the past year(s). Without such natal recruitment for at least the next 3-4 years, we should document a continuing decline in bird numbers at the colonies.

Alaska↗

USGS2022

Lake Ontario April prey fish survey results and Alewife assessment, 2022

The annual Lake Ontario April bottom trawl survey and Alewife, Alosa pseudoharengus , population assessment provide science to inform management decisions related to predator-prey balance and fish community dynamics. The 2022 survey was conducted from March 31 to April 26, included 235 trawls in the main lake and embayments, and sampled depths from 5 to 219 m (16 – 723 ft). The survey captured 311,770 fish from 30 species with a total weight of 7,740 kg (17,028 lbs.). Alewife were 85% of the catch by number while Rainbow Smelt, Osmerus mordax , Round Goby, Neogobius melanostomus , and Deepwater Sculpin, Myoxocephalus thompsonii , comprised 6%, 4%, and 4% of the catch, respectively. The 2022 biomass index for Rainbow Smelt decreased 80% relative to the high values observed in 2021 as did the value for Cisco, Coregonus artedi , (46% decline). Emerald Shiner, Notropis atherinoides , biomass index increased in 2021 and Threespine Stickleback, Gasterosteus aculeatus , biomass remained low. No Bloater, Coregonus hoyi , were captured during the 2022 survey. In 2022, Alewife biomass in U.S. waters (58.1 kilograms per hectare, kg·ha-1) was substantially higher than Canadian waters (26.3 kg·ha-1). The 2022 Alewife biomass index (41.6 kg·ha-1) decreased 10% from 2021 while the 2022 density index decreased 62% from 2021. Prediction modeling indicated the growth of the abundant 2020 Alewife year class, sampled as age-1 fish in 2021, would cause the adult Alewife biomass to increase in 2022. Although the adult Alewife biomass did increase relative to 2021 (61%), the increase was lower than predicted. The difference between the predictions and observations was because survival of age-1 fish from 2021 to 2022 was lower than had previously been observed. In the three previous years of observations the proportion of age-1 Alewife surviving to age 2 ranged from 0.33 to 0.53; however, that proportion was only 0.21 from 2021 to 2022. Survival estimates of Alewife age-5 through age-8 were higher than previously observed, possibly because salmonid predation focused on the abundant younger Alewife. The catch of age-1 Alewife in 2022, which is a measure of reproductive success in 2021, was below average and similar to the abundances of the 2018 and 2019 year classes. Simulation modeling results indicated the adult Alewife biomass is likely to increase slightly in 2023, whereas predictions for 2024 are less certain. Hydroacoustic sampling was used to estimate prey fish densities in open-water, pelagic habitats not sampled by the bottom trawl. Bottom trawl-based densities from the lake bottom were at least 25 times greater than densities of prey fish in the water column above the trawl. These results support the idea that, in April, when the warmest, most dense water is on the lake bottom, Alewife and most other pelagic prey fish primarily inhabit deep, near bottom habitats and can be effectively sampled with bottom trawling.

Lake Ontario↗

USGS2022

Framework for the development of the Columbia River mainstem fish tissue and water quality monitoring program - Bonneville Dam to Canadian border

The Columbia River provides important cultural, economic, and ecological services to a significant portion of the United States. Anadromous and resident fish species and other wildlife are integrated into the cultural traditions of all Tribes in the Columbia River Basin. Salmon, lamprey, sturgeon, and resident fish are an integral part of Tribal religion, culture, and physical sustenance. Despite concerns about the effect of contaminants on the aquatic ecosystem, the disproportionate effects of contaminants on members of Tribal sovereignties, and the known effects of contaminants on species protected under the Endangered Species Act, efforts to address toxic chemical pollution in the Columbia River have been limited. The lack of a dedicated contaminant monitoring program impedes evaluation and decision making regarding the health of the Columbia River ecosystem, as well as human health for Tribal members and others that consume fish and other biota from the Columbia River. The purpose of this framework is to provide guidance for the development of a long-term program (Program) that provides the basis for assessing the status and trends of contaminants in fish, sediment, water, and invertebrates along the 962-kilometer length of the Columbia River from the Bonneville Dam upriver to the Canadian Border (Figure ES1). This framework will focus on four persistent and bioaccumulative classes of toxic contaminants: • Mercury • Polychlorinated biphenyls (PCBs) • Dichlorodiphenyltrichloroethane (DDT) • Polybrominated diphenyl ethers (PBDEs) Media of interest in this framework include anadromous and resident fish, sediment, invertebrates, biofilm, and surface water. Future consideration of additional contaminants could include pesticides, per or poly-fluoroalkyl substances, 6PPD-quinone, and contaminants of emerging concern (CECs), which comprises a diverse group of anthropogenic chemicals that include thousands of pharmaceuticals, hormones, illicit drugs, new pesticides, personal care products, flame retardants, artificial sweeteners, perfluorinated compounds, disinfection byproducts, ultraviolet filters, and other industrial chemicals. This framework includes the vision, goals, and objectives for the Program. The vision for the Program is that it will provide the basis for assessing the status and trends of contaminants in the Columbia River to guide ecosystem recovery resulting in clean, healthy fish for current and future generations . The goals of the Program are to 1) conduct long-term monitoring to assess the spatial and temporal status and trends of toxics in fish, water, sediment, and other potential media in the Columbia River mainstem, from Bonneville Dam to the Canadian Border in perpetuity, 2) stimulate conversion of science into action by providing information to facilitate future decision making that improves ecosystem function and reduces contaminants in all levels of the food chain, and 3) adaptively manage the Program to address new key questions, incorporate new and emerging science advancements, and respond to community information needs. To facilitate achieving these goals, this framework provides details on technical planning; community outreach and engagement; and adaptive management to promote understanding and improve future decision making over the long-term, including updating the Program with new and emerging science and community needs. Additionally, data associated with the Program will be made available to the public through the EPA Water Quality Exchange (https://www.epa.gov/waterdata/water-quality-data). Documents and other materials associated with the Program can be accessed via a website hosted by Yakama Nation Fisheries (https://yakamafish-nsn.gov/restore/projects/columbia-river-mainstem- water-quality-monitoring-program). Although the Program is limited to the Columbia River upstream of the Bonneville Dam, collaboration with other entities that monitor contaminants in the Columbia River Basin, including the Columbia River estuary below Bonneville Dam, are also an important component of outreach. Our goal is to encourage efforts to ensure data comparability across programs and recognize that the growth and adaptive management of the Program considers basin-wide monitoring developments.

Oregon, Washington↗

USGS2024

Status and trends of the Lake Huron prey fish community, 1976-2023

The U. S. Geological Survey-Great Lakes Science Center has monitored annual changes in the offshore (depth >9m) prey fish community of Lake Huron since 1973. Monitoring of prey fish populations in Lake Huron is based on a bottom trawl survey that targets demersal (benthic) species and an acoustic-midwater trawl survey that targets pelagic species and life stages. In 2023, Bloater ( Coregonus hoyi ) accounted for 77% of the main basin biomass in bottom trawls and 86% of the main basin biomass in the acoustics survey. Despite this sustained importance of native species in the main basin, species diversity is below desired levels. Bloater in the main basin has exhibited population growth and strong recruitment in recent years, and Cisco ( Coregonus artedi ) has exhibited increased biomass in the North Channel since 2015. In contrast non-native Alewife ( Alosa pseudoharengus ), whose population collapsed in 2004 and has not recovered, were less than 1% of fish biomass in 2023. Rainbow Smelt ( Osmerus mordax ) accounted for 7% of the main basin biomass in bottom trawls and 22% of the main basin biomass in the acoustics survey. Despite remaining the second-most abundant prey species in the main basin, Rainbow Smelt has not shown appreciable increases in biomass despite recent strong year classes. Deepwater Sculpin ( Myoxocephalus thompsonii ) increased by 47% in 2023 and were 33% of the long-term average. Slimy Sculpin ( Cottus cognatus ) increased to 60% of the long-term average but remained rare in bottom trawl catches. In contrast, biomass of Round Goby ( Neogobius melanostomus ), a non-native species similar ecologically to the sculpin species, remained near the record high biomass reached in 2022. Current lake conditions characterized by ongoing oligotrophication seem to favor native coregonines over non-native fishes. Use of complementary surveys (bottom trawl, acoustics) remains important for evaluating prey fish status in Lake Huron, where prey fish community dynamics vary by basin and prey fish responses to changing environmental conditions depend on species and/or habitat.

Lake Huron↗

USGS2023

Effects of sucker gigging on fish populations in Oklahoma scenic rivers

Suckers (Catostomidae) are ecologically important, and some support popular fisheries, despite not being considered ‘sport fish’ in most states. Gigging suckers is a popular and culturally significant pastime in the Ozark Highlands, but little is known about the effect of gigging harvest on population dynamics of suckers. Therefore, research is needed to determine safe levels of sucker harvest that ensure sustainability of sucker gigging and protect overall ecosystem function. The objectives of this study were to: 1) determine the spatial distribution of common sucker species during spawning season (when sucker gigging is most effective), 2) determine the population size, age structure , and total mortality rate for common sucker species, and 3) model the effects of different harvest rates on sucker populations to determine the harvest rate at which growth overfishing and recruitment overfishing begin. Suckers were sampled using electrofishing, modified fyke netting, gillnetting, hoop netting, and seining and marked with passive integrated transponder (PIT) tags to provide information about population size, demographics, and coarse-scale movement patterns. A subset of fish sampled using the above gears and additional fish collected during gigging tournaments in 2017-2019 and 2021-2022 (no tournament was held in 2020) were used for age analyses. Tournament data collected prior to the initiation of this project were obtained from the state agency. Data from gigging tournaments indicated Golden Redhorse Moxostoma erythrurum, Black Redhorse M. duquesnei, White Sucker Catostomus commersonii, and Spotted Sucker Minytrema melanops were vulnerable to gigging harvest. Selection by giggers for larger individuals was apparent for all species except Golden Redhorse in 2019. Spotted Suckers constituted most fish harvested, but the proportion of each species harvested still varied among years. A total of 943 fish were aged from samples obtained from 2017 to 2022 and results from subsequent analyses indicated a high degree of variation in growth rates within and among species. Over 4,700 suckers were tagged with PIT tags and over 400 recaptures of these tagged fish were made since autumn 2018. Preliminary analyses indicate survival was consistent across samples and species, and detection rates varied by sampling event (3-month periods). Our most likely top multistrata model suggested that a large portion of fish within the upper Spavinaw, lower Spavinaw, and reservoir sections remain in these locations year-round (means: 0.46 – 0.67). Despite this, transition probabilities are still high for movement from upper Spavinaw to lower Spavinaw (mean: 0.32) and from lower Spavinaw to upper Spavinaw (mean: 0.38). Likewise, transition probabilities were high for movement from lower Spavinaw to the reservoir (mean: 0.15) and from the reservoir to lower Spavinaw (mean: 0.32). Transition probabilities between upper Spavinaw and the reservoir were low in both directions (means < 0.01). Population sizes, growth trajectories and length-weight relationships varied among species. Preliminary harvest models suggest species-specific regulation may be scientifically appropriate; however, it may be difficult for giggers to identify species while gigging. Based on our model results, there appears to be little risk of recruitment or growth overfishing for any species at current exploitation levels.

Oklahoma↗

USGS1995

Southeastern freshwater fishes

North America has the richest fauna of temperate freshwater fishes in the world, with about 800 native species in the waters of Canada and the United States. The center of this diversity is in the southeastern United States, where as many as 500 species may exist (62% of the continental fauna north of Mexico). Many coastal marine species also enter fresh waters of the Southeast, and at least 34 foreign fish species are established in the region. Although freshwater fishes of the United States are better studied than any fish fauna of comparable scope in the world (Lee et al. 1980; Hocutt and Wiley 1986; Matthews and Heins 1987; Page and Burr 1991; Mayden 1992), large gaps exist in scientific knowledge about the biology and ecology of most species. New species are still being discovered, and the taxonomy of other species is being refined. Seriously declining populations of freshwater fishes in the United States concern the scientific community (Deacon et al. 1979; Williams et al. 1989; Moyle and Leidy 1992; Warren and Burr 1994). This article briefly summarizes the current conservation status of southeastern freshwater fishes; the Southeast is emphasized because of its important fish biodiversity and to focus attention on the growing problem of adverse human impacts on the region's aquatic habitats (Mount 1986; Burkhead and Jenkins 1991; Etnier and Starnes 1991; Warren and Burr 1994).

Book chapter↗

USGS2001

A national pilot study of mercury contamination of aquatic ecosystems along multiple gradients" Bioaccumulation in fish

Water, sediment, and fish were sampled in the summer and fall of 1998 at 106 sites from 20 U.S. watershed basins to examine relations of mercury (Hg) and methylmercury (MeHg) in aquatic ecosystems. Bioaccumulation of Hg in fish from these basins was evaluated in relation to species, Hg and MeHg in surficial sediment and water, and watershed characteristics. Bioaccumulation was strongly (positively) correlated with MeHg in water (r = 0.63, p < 0.001) but only moderately with the MeHg in sediment (r = 0.33, p < 0.001) or total Hg in water (r = 0.28, p < 0.01). Of the other significantly measured parameters, pH, DOC, sulfate, sediment LOI, and the percent wetlands of each basin were also significantly correlated with Hg bioaccumulation in fish. The best model for predicting Hg bioaccumulation included Me Hg in water, PH of the water, % wetlands in the basin, and the AVS content of the sediment. These four variables accounted for 45% of the variability of the fish fillet Hg concentration normalized (divided) by total length; however, the majority was described by MeHg in water. A MeHg water concentration 0.12 ng/L was on average, associated with a fish fillet Hg concentration of 0.3 mg/kg wet weight for an age-3 fish when all species were considered. For age-3 largemouth bass, a MeHg water concentration of 0.058 ng/L was associated with the 0.3 mg/kg fillet concentration. Based on rankings for Hg in sediment, water, and fish, sampling sites from the following five study basins had the greatest Hg contamination: Nevada Basin and Range, South Florida Basin, Sacramento River Basin (California), Santee River Basin and Caostal Drainages (South Carolina), and the Long Island and New Jersey Coastal Drainags. A sampling and analysis strategy based on this pilot study is planned for all USGS/NAWQA study units over the next decade.

Biological Science Report↗

USGS1999

Biomonitoring of Environmental Status and Trends (BEST) Program: Field Procedures for Assessing the Exposure of Fish to Environmental Contaminants

This document describes procedures used to collect information, tissues, and fluids for documenting the exposure of fish to environmental contaminants. For the procedures described here, fish are captured (preferably by electrofishing) and held alive until processing (generally <1 h). Fish are weighed, measured, and examined for grossly visible external lesions and pathologies. A blood sample is collected by caudal veinipuncture using a needle and syringe. The fish is subdued and it's abdominal cavity opened. The internal organs are dissected from the fish for examination. The sex of the fish is determined by direct observation of its gonads. The liver is weighed (most species) and cut into small cubes and flash-frozen in cryogenic vials, which are stored and shipped in dry ice or liquid nitrogen. Additional liver cubes plus all grossly visible anomalies are preserved for histopathology. The gonads and spleen are weighed, and samples are preserved for histopathology. The kidneys are examined, and histopathology samples collected. A gill sample is also collected and preserved. All remaining tissues are returned to the carcass, which is wrapped in foil, labeled for chemical analysis, and chilled. Individual fish carcasses are composited by station, species, and gender; frozen; and shipped to the analytical laboratory. Procedures are also described for record keeping; processing blood to obtain serum and plasma; flash-freezing samples; cleaning equipment; and preventing the transport of living organisms among waterways. A list of necessary equipment and supplies is also provided.

Information and Technology Report↗

USGS2006

Relationships between reef fish communities and remotely sensed rugosity measurements in Biscayne National Park, Florida, USA

The realization that coral reef ecosystem management must occur across multiple spatial scales and habitat types has led scientists and resource managers to seek variables that are easily measured over large areas and correlate well with reef resources. Here we investigate the utility of new technology in airborne laser surveying (NASA Experimental Advanced Airborne Research Lidar (EAARL)) in assessing topographical complexity (rugosity) to predict reef fish community structure on shallow (<10 m deep) patch reefs. Marine portions of Biscayne National Park, Florida, USA, were surveyed remotely using the EAARL, and reef fish populations were visually surveyed on 10 patch reefs at independent, randomly selected stations ( n = 10–13 per reef). Rugosity at each station was assessed in situ by divers using the traditional chain-transect method (10-m scale), and remotely using the EAARL submarine topography data at multiple spatial scales (2, 5, and 10 m). The rugosity and biological datasets were analyzed together to elucidate the predictive power of EAARL rugosity in describing the variance in reef fish community variables and to assess the correlation between chain-transect and EAARL rugosity. EAARL rugosity was not well correlated with chain-transect rugosity, or with species richness of fishes (although statistically significant, the amount of variance explained by the model was very low). Variance in reef fish community attributes was better explained in reef-by-reef variability than by physical variables. However, once the reef-by-reef variability was taken into account in a two-way analysis of variance, the importance of rugosity could be seen on individual reefs. Fish species richness and abundance were statistically higher at high rugosity stations compared to medium and low rugosity stations, as predicted by prior ecological research. The EAARL shows promise as an important mapping tool for reef resource managers as they strive to inventory and protect coral reef resources.

Florida↗

USGS2001

Fish species and community distributions as proxies for sea-floor habitat distributions: the Stellwagen Bank National Marine Sanctuary example (northwest Atlantic, Gulf Of Maine)

Defining the habitats of fishes and associated fauna on outer continental shelves is problematic given the paucity of data on the actual types and distributions of seafloor habitats. However many regions have good data on the distributions of fishes from resource surveys or catch statistics because of the economic importance of the fisheries. Fish distribution data (species or communities) have been used as a proxy for the distribution of habitats to develop precautionary conservation strategies for habitat protection (e.g., marine protected areas, fishing gear restrictions). In this study we assessed the relationships between the distributions of fish communities and species derived from trawl survey data with the spatial distribution of sediment types determined by sampling and acoustic reflectance derived from multibeam sonar surveys in Stellwagen Bank National Marine Sanctuary. Fish communities were correlated with reflectance values but all communities did not occur in unique sediment types. This suggests that use of community distributions as proxies for habitats should include the caveat that a greater number of communities within an area could indicate a greater range of habitat types. Single species distributions showed relationships between abundance and reflectance values. Trawl catches with low abundances had wide variations in reflectance values while those with high abundances had narrower ranges indicating habitat affinities. Significant non-random frequency-dependent relationships were observed for 17 of 20 species although only 12 of 20 species had significant relationships based on rank correlation. These results suggest that species distributions based on trawl survey data can be used as proxies for the distribution of seafloor habitats. Species with known habitat associations can be used to infer habitat requirements of co-occurring species and can be used to identify a range of habitat types.

Massachusetts↗