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At least 775 records · Page 43Linked to original sources
USGS2014

Evaluation and prioritization of stream habitat monitoring in the Lower Columbia Salmon and Steelhead Recovery Domain as related to the habitat monitoring needs of ESA recovery plans

The lower Columbia River and its tributaries once supported abundant runs of salmon and steelhead; however, there are five species currently listed under the federal Endangered Species Act (ESA). The National Marine Fisheries Service has completed, and is proposing for adoption, a comprehensive ESA Recovery Plan for the Lower Columbia Evolutionarily Significant Units (ESUs) based on the recovery plans developed by Oregon and Washington. One of the primary factors attributed to the decline of these species is habitat degradation. There are numerous entities conducting status and/or trends monitoring of instream habitat in the lower Columbia River Basin, but because the programs were developed for agency specific reasons, the existing monitoring efforts are not well coordinated, and often lack the spatial coverage, certainty, or species coverage necessary to answer questions related to status and trends of the ESA listed populations. The Pacific Northwest Aquatic Monitoring Partnership’s Integrated Status and Trends Monitoring (ISTM) project was initiated to improve integration of existing and new monitoring efforts by developing recommendations for sampling frames, protocols, and data sharing. In an effort to meet the ISTM project goals, five objectives were identified: (1) identify and prioritize decisions, questions, and monitoring objectives, (2) evaluate how existing programs align with these management decisions, questions, and objectives, (3) identify the most appropriate monitoring design to inform priority management decisions, questions, and objectives, (4) use trade-off analysis to develop specific recommendations for monitoring based on outcomes of Objectives 1-3 and (5) recommend implementation and reporting mechanisms. This report summarizes the effort to address Objectives 1 and 2, detailing the commonalities among the habitat characteristics that all entities measure and monitor, and how the metrics align with the priorities listed in the comprehensive recovery plan for the Lower Columbia ESUs.

Report↗
USGS2002

Multibeam mapping of the West Florida Shelf, Gulf of Mexico

A zone of deep-water reefs is thought to extend from the mid and outer shelf south of Mississippi and Alabama to at least the northwestern Florida shelf off Panama City, Florida (Figure 1). The reefs off Mississippi and Alabama are found in water depths of 60 to 120 m (Ludwick and Walton, 1957; Gardner et al., 2001, in press) and were the focus of a multibeam echosounder (MBES) mapping survey by the U.S. Geological Survey (USGS) in 2000 (Gardner et al., 2000, Gardner et al., 2001, in press). If this deep-water-reef trend does exist along the northwestern Florida shelf, then it is critical to determine the accurate geomorphology and reef type that occur because of their importance as benthic habitats for fisheries. Georeferenced high-resolution mapping of bathymetry is a fundamental first step in the study of areas suspected to be critical habitats. Morphology is thought to be critical to defining the distribution of dominant demersal plankton/planktivores communities. Fish faunas of shallow hermatypic reefs have been well studied, but those of deep ahermatypic reefs have been relatively ignored. The ecology of deep-water ahermatypic reefs is fundamentally different from hermatypic reefs because autochthonous intracellular symbiotic zooxanthellae (the carbon source for hermatypic corals) do not form the base of the trophic web in ahermatypic reefs. Instead, exogenous plankton, transported to the reef by currents, serves as the primary carbon source. Thus, one of the principle uses of the morphology data will be to identify whether any reefs found are hermatypic or ahermatypic in origin.

Alabama;Florida;Mississippi↗
USGS1996

Habitat characteristics of benchmark streams in agricultural areas of eastern Wisconsin

Stream habitat characteristics were measured at twenty sites in agricultural areas of eastern Wisconsin by the U.S. Geological Survey in May and June, 1993 as part of the National Water-Quality Assessment Program Western Lake Michigan Drainages study unit. These "benchmark" stream sites were selected for study to represent standards of reference for comparison to other streams in similar physical settings that appear to be more detrimentally affected by agriculture. The agricultural benchmark streams were selected from four physical settings, or relatively homogeneous units (RHU's), that differ in bedrock type and texture of surficial deposits. Habitat characteristics at streams in these four physical settings are described and compared to each other, and a habitat classification scheme was used to rank the quality of habitat in these streams. Additional aquatic information was collected along with the habitat data: water-quality data and population surveys of fish, invertebrates, and algae. Habitat data were collected at three levels: drainage basin, stream segment between major tributaries (length from 1 to 14 km), and stream reach (approximately 150m). Results of statistical analyses show that, in general, most correlations are among basin-level habitat characteristics. Few correlations were observed among reach- and basin-level characteristics. Principal components analysis (PCA) on basin-level data resulted in principal components that reflect RHU, land use or latitude, and basin size. Groupings of habitat characteristics at the reach level are less clearly attributed to some outside environmental factor. Streams that have undergone habitat restoration for fisheries group closely together on PCA ordination plots. Less than half of the habitat characteristics were found to be significantly different between one RHU and the other three. Characteristics that differed between RHU's were mainly at the basin level but also included some reach-level characteristics. Stream-habitat characteristics were classified according to the Michigan Department of Environmental Quality, Great Lakes Environmental Assessment Section (GLEAS) Procedure 51. No relation was found between GLEAS scores and RHU or the percentage of agricultural land in the drainage basins above the benchmark-stream sites. GLEAS scores were varied in each RHU. Streams with high GLEAS scores (rated good or excellent) can be considered benchmark or reference streams as far as habitat is concerned. Of the 20 streams sampled, 16 met this criterion.

Wisconsin↗
USGS2011

The effects of Glen Canyon Dam operations on early life stages of rainbow trout in the Colorado River

The Lees Ferry reach of the Colorado River-a 16-mile segment from Glen Canyon Dam to the confluence with the Paria River-supports an important recreational rainbow trout (Oncorhynchus mykiss) fishery. In Grand Canyon, nonnative rainbow trout prey on and compete for habitat and food with native fish, such as the endangered humpback chub (Gila cypha). Experimental flow fluctuations from the dam during winter and spring 2003-5 dewatered and killed a high proportion of rainbow trout eggs in gravel spawning bars, but this mortality had no measurable effect on the abundance of juvenile fish. Flow fluctuations during summer months reduced growth of juvenile trout relative to steadier flows. A high-flow experiment in March 2008 increased both trout survival rates for early life stages and fish abundance. These findings demonstrate that Glen Canyon Dam operations directly affect the trout population in the Lees Ferry reach and could be used to regulate nonnative fish abundance to limit potential negative effects of trout on native fish in Grand Canyon.

Fact Sheet↗
USGS2015

Salmon habitat assessment for conservation planning in the lower White Salmon River, Washington

In 2011, Condit Dam was removed from the White Salmon River, Washington. Since dam removal, there has been interest among scientists (State and Federal), Tribes, non-profit organizations, and the general public in assessing Pacific salmon habitat and use in the White Salmon River for conservation planning and potential fishery management actions. The study area extended from the lower 6 miles of the White Salmon River to the confluence with the Columbia River, including the former reservoir area. The Mid-Columbia Fisheries Enhancement Group received a grant to initiate efforts to plan for salmon habitat protection in the lower 6 river miles of the White Salmon River. As part of efforts by the Mid-Columbia Fisheries Enhancement Group to conduct conservation planning, the U.S. Geological Survey (USGS) used current and historical habitat information to assist in the planning process. The USGS compiled existing georeferenced habitat data into a Geographic Information System to identify areas of high quality habitat for salmon, potential areas for restoration/improvement, and areas that could be threatened. The primary sources of georeferenced data for this project include a lidar flight contracted by PacifiCorp, bathymetry from USGS, and fall Chinook salmon redd surveys from the U.S. Fish and Wildlife Service and Washington Department of Fish and Wildlife. Redd observations provided support that the study area is a migratory corridor for salmon and steelhead and that the lowest 2–3 miles had the highest concentration of documented fall Chinook salmon redds. The study area has potential for restoration/conservation areas to improve/conserve salmon habitat.

Washington↗
USGS2012

AquaPathogen X--A template database for tracking field isolates of aquatic pathogens

AquaPathogen X is a template database for recording information on individual isolates of aquatic pathogens and is available for download from the U.S. Geological Survey (USGS) Western Fisheries Research Center (WFRC) website (http://wfrc.usgs.gov). This template database can accommodate the nucleotide sequence data generated in molecular epidemiological studies along with the myriad of abiotic and biotic traits associated with isolates of various pathogens (for example, viruses, parasites, or bacteria) from multiple aquatic animal host species (for example, fish, shellfish, or shrimp). The simultaneous cataloging of isolates from different aquatic pathogens is a unique feature to the AquaPathogen X database, which can be used in surveillance of emerging aquatic animal diseases and clarification of main risk factors associated with pathogen incursions into new water systems. As a template database, the data fields are empty upon download and can be modified to user specifications. For example, an application of the template database that stores the epidemiological profiles of fish virus isolates, called Fish ViroTrak (fig. 1), was also developed (Emmenegger and others, 2011).

Fact Sheet↗
USGS2002

Simulation of reservoir storage and firm yields of three surface-water supplies, Ipswich River Basin, Massachusetts

A Hydrologic Simulation Program FORTRAN (HSPF) model previously developed for the Ipswich River Basin was modified to simulate the hydrologic response and firm yields of the water-supply systems of Lynn, Peabody, and Salem-Beverly. The updated model, expanded to include a portion of the Saugus River Basin that supplies water to Lynn, simulated reservoir system storage over a 35-year period (1961-95) under permitted withdrawals and hypothetical restrictions designed to maintain seasonally varied streamflow for aquatic habitat. A firm yield was calculated for each system and each withdrawal restriction by altering demands until the system failed. This is considered the maximum withdrawal rate that satisfies demands, but depletes reservoir storage. Simulations indicate that, under the permitted withdrawals, Lynn and Salem-Beverly were able to meet demands and generally have their reservoir system recover to full capacity during most years; reservoir storage averaged 83 and 82 percent of capacity, respectively. The firm yields for the Lynn and Salem-Beverly systems were 11.4 and 12.2 million gallons per day (Mgal/d), respectively, or 8 and 21 percent more than average 1998-2000 demands, respectively. Under permitted withdrawals and average 1998-2000 demands, the Peabody system failed in all years; thus Peabody purchased water to meet demands. The firm yield for the Peabody system is 3.70 Mgal/d, or 37 percent less than the average 1998-2000 demand. Simulations that limit withdrawals to levels recommended by the Ipswich River Fisheries Restoration Task Group (IRFRTG) indicate that under average 1998-2000 demands, reservoir storage was depleted in each of the three systems. Reservoir storage under average 1998-2000 demands and IRFRTG-recommended streamflow requirements averaged 15, 22, and 71 percent of capacity for the Lynn, Peabody, Salem-Beverly systems, respectively. The firm-yield estimates under the IRFRTG-recommended streamflow requirements were 6.02, 1.94, and 7.69 Mgal/d or 43, 64, and 34 percent less than the average 1998-2000 demands for the Lynn, Peabody, and Salem-Beverly systems, respectively. Simulations that limit withdrawals from the Saugus River to a less stringent set of restrictions (based on an Instream Flow Incremental Methodology study) than those previously simulated indicate that the firm yield of the Lynn system is about 31 percent less than the average 1998-2000 withdrawals (7.31 Mgal/d).

Massachusetts↗
USGS2008

Fort Collins Science Center: Fiscal Year 2007 Accomplishments

In Fiscal Year 2007 (FY07), the U.S. Geological Survey (USGS) Fort Collins Science Center (FORT) continued research vital to U.S. Department of the Interior science and management needs and associated USGS programmatic goals. FORT work also supported the science needs of other government agencies as well as private cooperators. Specifically, FORT scientific research and technical assistance focused on client and partner needs and goals in the areas of biological information management, fisheries and aquatic systems, invasive species, status and trends of biological resources, terrestrial ecosystems, and wildlife resources. In addition, FORT's 5-year strategic plan was refined to incorporate focus areas identified in the USGS strategic science plan, including ecosystem-landscape analysis, global climate change, and energy and mineral resource development. As a consequence, several science projects initiated in FY07 were either entirely new research dor amplifications of existing work. Highlights of FORT project accomplishments are described below under the USGS science program with which each task is most closely associated. The work of FORT's 6 branches (Aquatic Systems and Technology Applications, Ecosystem Dynamics, Information Science, Invasive Species Science, Policy Analysis and Science Assistance, and Species and Habitats of Federal Interest) often involves major partnerships with other agencies or cooperation with other USGS disciplines (Geology, Geography, Water Resources) and the Geospatial Information Office.

Open-File Report↗
USGS2021

Habitat associations of black basses in a reservoir system

The habitat associations of three species of black bass Micropterus spp. were examined in six habitat types (i.e., sediment, gravel, rock, riprap, brush, and aquatic plants) along a cascade of 10 reservoirs in the Tennessee River. We tested whether habitat selection differed among the three species and whether species’ co-occurrence depended on habitat type. We found that some species occurred in some habitats in proportion to habitat availability (some at higher frequencies and some at frequencies lower than availability) and that juveniles and adults exhibited similar occurrence patterns. Our habitat selection results largely corroborate previous descriptions of black bass habitat associations and generally track preference for lithic habitats, as reported in native streams. We expected the different black bass species to show negative co-occurrence to avoid competitive interactions. Nevertheless, we found that with few exceptions, adults co-occurred in habitats mostly as expected by chance and juveniles co-occurred more often than was expected by chance. Our findings imply that environmental filtering, rather than competitive interactions that dominate in natural environments, may be the dominant mechanism shaping black bass assemblages in reservoirs of the Tennessee River. The observed patterns of habitat selection and co-occurrence further suggest that the conservation and management of black bass assemblages in reservoirs can be supported through habitat management activities. Protecting and enhancing the remaining lithic habitat in the reservoirs as well as recovering habitat that is blanketed by sediment could provide desirable environments for all black bass species.

Tennessee River basin↗
USGS2008

Protocol for Monitoring Fish Assemblages in Pacific Northwest National Parks

Rivers and streams that drain from Olympic, Mount Rainier, and North Cascades National Parks are among the most protected corridors in the lower 48 States, and represent some of the largest tracts of contiguous, undisturbed habitat throughout the range of several key fish species of the Pacific Northwest. These watersheds are of high regional importance as freshwater habitat sanctuaries for native fish, where habitat conditions are characterized as having little to no disturbance from development, channelization, impervious surfaces, roads, diversions, or hydroelectric projects. Fishery resources are of high ecological and cultural importance in Pacific Northwest National Parks, and significantly contribute to economically important recreational, commercial, and tribal fisheries. This protocol describes procedures to monitor trends in fish assemblages, fish abundance, and water temperature in eight rivers and five wadeable streams in Olympic National Park during summer months, and is based on 4 years of field testing. Fish assemblages link freshwater, marine, and terrestrial ecosystems. They also serve as focal resources of national parks and are excellent indicators of ecological conditions of rivers and streams. Despite the vital importance of native anadromous and resident fish populations, there is no existing monitoring program for fish assemblages in the North Coast and Cascades Network. Specific monitoring objectives of this protocol are to determine seasonal and annual trends in: (1) fish species composition, (2) timing of migration of adult fish, (3) relative abundance, (4) age and size structure, (5) extent of non-native and hatchery fish, and (6) water temperature. To detect seasonal and annual trends in fish assemblages in reference sites, we rely on repeated and consistent annual sampling at each monitoring site. The general rationale for the repeated sampling of reference sites is to ensure that we account for the high interannual variability in fish movements and abundances in rivers. One underlying assumption is that the monitoring program is designed in perpetuity, and consequently our capability to detect trends substantially increases with time. The protocol describes sampling designs, methods, training procedures, safety considerations, data management, data analysis, and reporting. The allocation of sampling effort represents a balance between ecological considerations, a sound monitoring approach, and practical limitations caused by logistical constraints and a limited annual budget of $55,000. The widespread declines of native fish species in western North America highlights the importance and urgency of understanding trends in fish assemblages from undisturbed habitats. Seasonal and annual trends in fish assemblages will provide insights at the individual, population, and assemblage level. This protocol will allow managers to detect increases and decreases in abundance of priority management species, and occurrence of non-native, hatchery, and federally listed fish. The detection of trends in fish assemblages will allow for specific management actions that may include: implementation of more appropriate fishing regulations, evaluation of existing hatchery releases, control of non-native fish species, and prioritization of habitat restoration projects. Dissemination and communication of scientific findings on North Coast and Cascades Network fish assemblages will be a core product of this protocol, which will have much relevance to decision makers, park visitors, researchers, and educators.

Techniques and Methods↗
USGS1993

Distribution, abundance, and resting microhabitat of burbot on Julian's Reef, southwestern Lake Michigan

We used a remotely operated submersible vehicle equipped with a color video camera to videotape the lake bed and document the distribution and abundance of burbot Lota lota on a 156‐hectare portion of Julianˈs Reef in southwestern Lake Michigan. The substrates and bathymetry of the study area had been mapped recently by side‐scan sonar. Burbot density determined from videotapes covering 6,900 m 2 of lake bed at depths of 23–41 m averaged 139 individuals/ hectare (range, 0–571/hectare). This density was substantially higher than the highest burbot density (59–95/hectare) reported in the literature. Burbot were present on the lake bed at depths of 23–36 m, but were most abundant near the crest of the reef at 23–28 m, where the water temperature was 8–13°C, their preferred summer temperature range. Substrates in that temperature range on the reef were bedrock, bedrock ridges, and bedrock and rubble. Burbot were most abundant on the bedrock and rubble. Small fish and macroinvertebrates typically eaten by burbot elsewhere in western Lake Michigan were distributed on the reef according to their summer preferred temperatures and were not seen in abundance where burbot density was highest. We saw no lake trout Salvelinus namaycush on Julianˈs Reef, although large numbers of juvenile lake trout have been stocked there annually and temperatures on the reef were in the preferred summer temperature range for lake trout.

Michigan, Wisconsin↗
USGS2013

Asian carp behavior in response to static water gun firing

The potential for invasion of Asian carp into the Great Lakes has ecological and socio-economic implications. If they become established, Asian carp are predicted to alter lake ecosystems and impact commercial and recreational fisheries. The Chicago Sanitary and Shipping Canal is an important biological conduit between the Mississippi River Basin, where invasive Asian carp are abundant, and the Great Lakes. Millions of dollars have been spent to erect an electric barrier defense in the canal to prevent movement of Asian carp into the Great Lakes, but the need for additional fish deterrent technologies to supplement the existing barrier is warranted. Scientists with the U.S. Geological Survey Northern Rocky Mountain Science Center are examining seismic water gun technology, formerly used in oceanic oil exploration, as a fish deterrent. The goal of the current study is to employ telemetry and sonar monitoring equipment to assess the behavioral response of Asian carp to seismic water guns and the sound energy it generates.

Illinois↗
USGS2026

Lake Ontario August gillnet survey and lake trout assessment, 2025

Lake Ontario Lake Trout ( Salvelinus namaycush ) rehabilitation has been assessed with fishery dependent and independent surveys to evaluate program benchmarks and compare observations with management objectives since 1983. These surveys provide information on the abundance, strain composition, and performance of stocked Lake Trout, as well as information on levels of natural recruitment, and Sea Lamprey ( Petromyzon marinus ) wounding rates. Lake Trout catch per unit effort (CPUE) in the August gillnet survey was notably lower in 2025. Percentage of naturally produced Lake Trout in US waters continued to be relatively low for mature and immature fish. Sea Lamprey wounding rates on Lake Trout > 432 mm in 2025 were below management target in US waters with zero A1 wounds observed. Overall, the 2025 survey results suggest that Lake Trout indicators continue to meet some of the management objectives but are not showing signs of meaningful recruitment to the adult stock.

Lake Ontario↗
USGS2012

A brief history and summary of the effects of river engineering and dams on the Mississippi River system and delta

The U.S. Geological Survey Forecast Mekong project is providing technical assistance and information to aid management decisions and build science capacity of institutions in the Mekong River Basin. A component of this effort is to produce a synthesis of the effects of dams and other engineering structures on large-river hydrology, sediment transport, geomorphology, ecology, water quality, and deltaic systems. The Mississippi River Basin (MRB) of the United States was used as the backdrop and context for this synthesis because it is a continental scale river system with a total annual water discharge proportional to the Mekong River, has been highly engineered over the past two centuries, and the effects of engineering have been widely studied and documented by scientists and engineers. The MRB is controlled and regulated by dams and river-engineering structures. These modifications have resulted in multiple benefits including navigation, flood control, hydropower, bank stabilization, and recreation. Dams and other river-engineering structures in the MRB have afforded the United States substantial socioeconomic benefits; however, these benefits also have transformed the hydrologic, sediment transport, geomorphic, water-quality, and ecologic characteristics of the river and its delta. Large dams on the middle Missouri River have substantially reduced the magnitude of peak floods, increased base discharges, and reduced the overall variability of intraannual discharges. The extensive system of levees and wing dikes throughout the MRB, although providing protection from intermediate magnitude floods, have reduced overall channel capacity and increased flood stage by up to 4 meters for higher magnitude floods. Prior to major river engineering, the estimated average annual sediment yield of the Mississippi River Basin was approximately 400 million metric tons. The construction of large main-channel reservoirs on the Missouri and Arkansas Rivers, sedimentation in dike fields, and protection of channel banks by revetments throughout the basin, have reduced the overall sediment yield of the MRB by more than 60 percent. The primary alterations to channel morphology by dams and other engineering projects have been (1) channel simplification and reduced dynamism; (2) lowering of channel-bed elevation; and (3) disconnection of the river channel from the flood plain, except during extreme flood events. Freshwater discharge from the Mississippi River and its associated sediment and nutrient loads strongly influence the physical and biological components in the northern Gulf of Mexico. Ninety percent of the nitrogen load reaching the Gulf of Mexico is from nonpoint sources with about 60 percent coming from fertilizer and mineralized soil nitrogen. Much of the phosphorus is from animal manure from pasture and rangelands followed by fertilizer applied to corn and soybeans. Increased nutrient enrichment in the northern Gulf of Mexico has resulted in the degradation of water quality as more phytoplankton grow, which increases turbidity and depletes oxygen in the lower depths creating what is known as the "dead zone." In 2002, the dead zone was 22,000 square kilometers (km2), an area similar to the size of the State of Massachusetts. Changes in the flow regime from engineered structures have had direct and indirect effects on the fish communities. The navigation pools in the upper Mississippi River have aged, and these overwintering habitats, which were created when the pools filled, have declined as sedimentation reduces water depth. Reproduction of paddlefish may have been adversely affected by dams, which impede access to suitable spawning habitats. Fishes that inhabit swift-current habitats in the unimpounded lower Mississippi River have not declined as much as in the upper Mississippi River. The decline of the pallid sturgeon may be attributable to channelization of the Missouri River above St. Louis, Missouri. The Missouri River supports a rich fish community and remains relatively intact. Nevertheless, the widespread and long history of human intervention in river discharge has contributed to the declines of about 25 percent of the species. The Mississippi River Delta Plain is built from six delta complexes composed of a massive area of coastal wetlands that support the largest commercial fishery in the conterminous United States. Since the early 20th century, approximately 4,900 km2 of coastal lands have been lost in Louisiana. One of the primary mechanisms of wetland loss on the Plaquemines-Balize complex is believed to be the disconnection of the river distributary network from the delta plain by the massive system of levees on the delta top, which prevent overbank flooding and replenishment of the delta top by sediment and nutrient deliveries. Efforts by Federal and State agencies to conserve and restore the Mississippi River Delta Plain began over three decades ago and have accelerated over the past decade. Regardless of these efforts, however, land losses are expected to continue because the reduced upstream sediment supplies are not sufficient to keep up with the projected depositional space being created by the combined forces of delta plain subsidence and global sea-level rise.

Alabama;Alberta;Arkansas;Colorado;Georgia;Illinois↗
USGS2016

Developing fish trophic interaction indicators of climate change for the Great Lakes

This project addressed regional climate change effects on aquatic food webs in the Great Lakes. We sought insights by examining Lake Erie as a representative system with a high level of anthropogenic impacts, strong nutrient gradients, seasonal hypoxia, and spatial overlap of cold- and cool-water fish guilds. In Lake Erie and in large embayments throughout the Great Lakes basin, this situation is a concern for fishery managers, as climate change may exacerbate hypoxia and reduce habitat volume for some species. We examined fish community composition, fine-scale distribution, prey availability, diets, and biochemical tracers for dominant fishes from study areas with medium-high nutrient levels (mesotrophic, Fairport study area), and low nutrient levels (oligotrophic, Erie study area). This multi-year database (2011-2013) provides the ability to contrast years with wide variation in rainfall, winter ice-cover, and thermal stratification. In addition, multiple indicators of dietary and distributional responses to environmental variability will allow resource managers to select the most informative approach for addressing specific climate change questions. Our results support the incorporation of some relatively simple and cost-efficient approaches into existing agency monitoring programs to track the near-term condition status of fish and fish community composition by functional groupings. Other metrics appear better suited for understanding longer-term changes, and may take more resources to implement on an ongoing basis. Although we hypothesized that dietary overlap and similarity in selected species would be sharply different during thermal stratification and hypoxic episodes, we found little evidence of this. Instead, to our surprise, this study found that fish tended to aggregate at the edges of hypoxia, highlighting potential spatial changes in catch efficiency of the fishery. This work has had several positive impacts on a wide range of resource management and stakeholder activities, most notably in Lake Erie. The results were instrumental in the development of an interim decision rule for dealing with data collected during hypoxic events to improve stock assessment of Yellow Perch. In addition, novel findings from this study regarding spatial and temporal variability in hypoxia have aided US-Environmental Protection Agency in the development of a modified sampling protocol to more accurately quantify the central basin hypoxic zone, and this directly addressed a goal of the Great Lakes Water Quality Agreement of 2012 to reduce the extent and severity of hypoxia. Finally, the study areas developed in this project formed the basis for food web sampling in the 2014 bi-national Coordinated Science and Monitoring Initiative work in Lake Erie.

Report↗
USGS2012

Bathythermal habitat use by strains of Great Lakes- and Finger Lakes-origin lake trout in Lake Huron after a change in prey fish abundance and composition

A study conducted in Lake Huron during October 1998–June 2001 found that strains of Great Lakes-origin (GLO) lake trout Salvelinus namaycush occupied significantly higher temperatures than did Finger Lakes-origin (FLO; New York) lake trout based on data from archival (or data storage) telemetry tags that recorded only temperature. During 2002 and 2003, we implanted archival tags that recorded depth as well as temperature in GLO and FLO lake trout in Lake Huron. Data subsequently recorded by those tags spanned 2002–2005. Based on those data, we examined whether temperatures and depths occupied by GLO and FLO lake trout differed during 2002–2005. Temperatures occupied during those years were also compared with occupied temperatures reported for 1998–2001, before a substantial decline in prey fish biomass. Temperatures occupied by GLO lake trout were again significantly higher than those occupied by FLO lake trout. This result supports the conclusion of the previous study. The GLO lake trout also occupied significantly shallower depths than FLO lake trout. In 2002–2005, both GLO and FLO lake trout occupied significantly lower temperatures than they did in 1998–2001. Aside from the sharp decline in prey fish biomass between study periods, the formerly abundant pelagic alewife Alosa pseudoharengus virtually disappeared and the demersal round goby Neogobius melanostomus invaded the lake and became locally abundant. The lower temperatures occupied by lake trout in Lake Huron during 2002–2005 may be attributable to changes in the composition of the prey fish community, food scarcity (i.e., a retreat to cooler water could increase conversion efficiency), or both.

Transactions of the American Fisheries Society↗
USGS2001

Daily and seasonal variability of pH, dissolved oxygen, temperature, and specific conductance in the Colorado River between the forebay of Glen Canyon Dam and Lees Ferry, northeastern Arizona, 1998-99

The productivity of the trout fishery in the tailwater reach of the Colorado River downstream from Glen Canyon Dam depends on the productivity of lower trophic levels. Photosynthesis and respiration are basic biological processes that control productivity and alter pH and oxygen concentration. During 1998?99, data were collected to aid in the documentation of short- and long-term trends in these basic ecosystem processes in the Glen Canyon reach. Dissolved-oxygen, temperature, and specific-conductance profile data were collected monthly in the forebay of Glen Canyon Dam to document the status of water chemistry in the reservoir. In addition, pH, dissolved-oxygen, temperature, and specific-conductance data were collected at five sites in the Colorado River tailwater of Glen Canyon Dam to document the daily, seasonal, and longitudinal range of variation in water chemistry that could occur annually within the Glen Canyon reach.

Arizona↗
USGS2014

Distribution, stock composition and timing, and tagging response of wild Chinook Salmon returning to a large, free-flowing river basin

Chinook Salmon Oncorhynchus tshawytscha returns to the Yukon River basin have declined dramatically since the late 1990s, and detailed information on the spawning distribution, stock structure, and stock timing is needed to better manage the run and facilitate conservation efforts. A total of 2,860 fish were radio-tagged in the lower basin during 2002–2004 and tracked upriver. Fish traveled to spawning areas throughout the basin, ranging from several hundred to over 3,000 km from the tagging site. Similar distribution patterns were observed across years, suggesting that the major components of the run were identified. Daily and seasonal composition estimates were calculated for the component stocks. The run was dominated by two regional components comprising over 70% of the return. Substantially fewer fish returned to other areas, ranging from 2% to 9% of the return, but their collective contribution was appreciable. Most regional components consisted of several principal stocks and a number of small, spatially isolated populations. Regional and stock composition estimates were similar across years even though differences in run abundance were reported, suggesting that the differences in abundance were not related to regional or stock-specific variability. Run timing was relatively compressed compared with that in rivers in the southern portion of the species’ range. Most stocks passed through the lower river over a 6-week period, ranging in duration from 16 to 38 d. Run timing was similar for middle- and upper-basin stocks, limiting the use of timing information for management. The lower-basin stocks were primarily later-run fish. Although differences were observed, there was general agreement between our composition and timing estimates and those from other assessment projects within the basin, suggesting that the telemetry-based estimates provided a plausible approximation of the return. However, the short duration of the run, complex stock structure, and similar stock timing complicate management of Yukon River returns.

Alaska, Yukon Territory↗