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At least 775 records · Page 43Linked to original sources
USGS2018

Biota connect aquatic habitats throughout freshwater ecosystem mosaics

Freshwater ecosystems are linked at various spatial and temporal scales by movements of biota adapted to life in water. We review the literature on movements of aquatic organisms that connect different types of freshwater habitats, focusing on linkages from streams and wetlands to downstream waters. Here, streams, wetlands, rivers, lakes, ponds, and other freshwater habitats are viewed as dynamic freshwater ecosystem mosaics (FEMs) that collectively provide the resources needed to sustain aquatic life. Based on existing evidence, it is clear that biotic linkages throughout FEMs have important consequences for biological integrity and biodiversity. All aquatic organisms move within and among FEM components, but differ in the mode, frequency, distance, and timing of their movements. These movements allow biota to recolonize habitats, avoid inbreeding, escape stressors, locate mates, and acquire resources. Cumulatively, these individual movements connect populations within and among FEMs and contribute to local and regional diversity, resilience to disturbance, and persistence of aquatic species in the face of environmental change. Thus, the biological connections established by movement of biota among streams, wetlands, and downstream waters are critical to the ecological integrity of these systems. Future research will help advance our understanding of the movements that link FEMs and their cumulative effects on downstream waters.

Journal of the American Water Resources Associatio↗
USGS2014

Multilocus phylogeography and systematic revision of North American water shrews (genus: Sorex )

North American water shrews, which have traditionally included Sorex alaskanus , S. bendirii , and S. palustris , are widely distributed through Nearctic boreal forests and adapted for life in semiaquatic environments. Molecular mitochondrial signatures for these species have recorded an evolutionary history with variable levels of regional divergence, suggesting a strong role of Quaternary environmental change in speciation processes. We expanded molecular analyses, including more-comprehensive rangewide sampling of specimens representing North American water shrew taxa, except S. alaskanus , and sequencing of 4 independent loci from the nuclear and mitochondrial genomes. We investigated relative divergence of insular populations along the North Pacific Coast, and newly recognized diversity from southwestern montane locations, potentially representing refugial isolates. Congruent independent genealogies, lack of definitive evidence for contemporary gene flow, and high support from coalescent species trees indicated differentiation of 4 major geographic lineages over multiple glacial cycles of the late Quaternary, similar to a growing number of boreal taxa. Limited divergence of insular populations suggested colonization following the last glacial. Characterization of southwestern montane diversity will require further sampling but divergence over multiple loci is indicative of a relictual sky-island fauna. We have reviewed and revised North American water shrew taxonomy including the recognition of 3 species within what was previously known as S. palustris . The possibility of gene flow between most distantly related North American water shrew lineages coupled with unresolved early diversification of this group and other sibling species reflects a complex but potentially productive system for investigating speciation processes.

Journal of Mammalogy↗
USGS2022

Basis for technical guidance to evaluate evapotranspiration covers

This report provides technical guidance to evaluate evapotranspiration (ET) cover design criteria with emphasis on applications to long-term disposal sites such as Uranium Mill Tailings Radiation Control Act of 1978 (UMTRCA) sites. Water balance covers, also known as ET covers, reduce percolation by storing precipitation then allowing vegetation to cycle it back to the atmosphere. For long-term (over 200 years) waste isolation, ET covers may provide significant benefits over conventional, resistive covers that rely on engineered components, such as compacted clay barriers and geomembranes, to divert precipitation. UMTRCA covers were designed to impede and attenuate radioactive radon-222 gas flux from the underlying tailings, while minimizing percolation of any contaminants to groundwater. Such covers have implicit regulatory compliance post-construction. Alternative cover systems, such as ET covers, must explicitly meet some anticipated performance, and demonstrate beneficial use. While all engineered structures will change over time, an ET cover evolves with nature rather than resisting it, which may perpetuate a more reliable waste isolation system. For example, UMTRCA sites must provide safe and environmentally sound disposal, long-term stabilization, and control of uranium mill tailings and remain effective for up to 1,000 years, to the extent reasonably achievable, and, in any case, for at least 200 years. UMTRCA covers rely on the engineered properties to meet regulatory requirements during and immediately after construction. Subsequent compliance is implicit in the design. The design of an ET cover is far more dependent on mesoscale meteorology, native vegetation, and edaphic soil properties which are site-specific. Therefore, the design and anticipated performance of an ET cover must be demonstrated through a combination of modeling, natural analogues and pilot studies, and then verified with monitoring data. There is no single ET cover design that can likely meet performance standards across different climates, available soils, and vegetation. The technical information presented in this report reviews guidelines and performance criteria commonly used for ET covers at municipal waste facilities and the consideration factors of such covers to meet the regulatory requirements at long-term disposal sites.

Report↗
USGS2016

Microbial antimony biogeochemistry: Enzymes, regulation, and related metabolic pathways

Antimony (Sb) is a toxic metalloid that occurs widely at trace concentrations in soil, aquatic systems, and the atmosphere. Nowadays, with the development of its new industrial applications and the corresponding expansion of antimony mining activities, the phenomenon of antimony pollution has become an increasingly serious concern. In recent years, research interest in Sb has been growing and reflects a fundamental scientific concern regarding Sb in the environment. In this review, we summarize the recent research on bacterial antimony transformations, especially those regarding antimony uptake, efflux, antimonite oxidation, and antimonate reduction. We conclude that our current understanding of antimony biochemistry and biogeochemistry is roughly equivalent to where that of arsenic was some 20 years ago. This portends the possibility of future discoveries with regard to the ability of microorganisms to conserve energy for their growth from antimony redox reactions and the isolation of new species of “antimonotrophs.”

Applied and Environmental Microbiology↗
USGS2011

Quantifying seascape structure: Extending terrestrial spatial pattern metrics to the marine realm

Spatial pattern metrics have routinely been applied to characterize and quantify structural features of terrestrial landscapes and have demonstrated great utility in landscape ecology and conservation planning. The important role of spatial structure in ecology and management is now commonly recognized, and recent advances in marine remote sensing technology have facilitated the application of spatial pattern metrics to the marine environment. However, it is not yet clear whether concepts, metrics, and statistical techniques developed for terrestrial ecosystems are relevant for marine species and seascapes. To address this gap in our knowledge, we reviewed, synthesized, and evaluated the utility and application of spatial pattern metrics in the marine science literature over the past 30 yr (1980 to 2010). In total, 23 studies characterized seascape structure, of which 17 quantified spatial patterns using a 2-dimensional patch-mosaic model and 5 used a continuously varying 3-dimensional surface model. Most seascape studies followed terrestrial-based studies in their search for ecological patterns and applied or modified existing metrics. Only 1 truly unique metric was found (hydrodynamic aperture applied to Pacific atolls). While there are still relatively few studies using spatial pattern metrics in the marine environment, they have suffered from similar misuse as reported for terrestrial studies, such as the lack of a priori considerations or the problem of collinearity between metrics. Spatial pattern metrics offer great potential for ecological research and environmental management in marine systems, and future studies should focus on (1) the dynamic boundary between the land and sea; (2) quantifying 3-dimensional spatial patterns; and (3) assessing and monitoring seascape change.

Marine Ecology Progress Series↗
USGS2002

Sources, fate, and effects of PAHs in shallow water environments: a review with special reference to small watercraft

Polycyclic aromatic hydrocarbons (PAHs) are aromatic hydrocarbons with two to seven fused carbon (benzene) rings that can have substituted groups attached. Shallow coastal, estuarine, lake, and river environments receive PAHs from treated wastewater, stormwater runoff, petroleum spills and natural seeps, recreational and commercial boats, natural fires, volcanoes, and atmospheric deposition of combustion products. Abiotic degradation of PAHs is caused by photooxidation, photolysis in water, and chemical oxidation. Many aquatic microbes, plants, and animals can metabolize and excrete ingested PAHs; accumulation is associated with poor metabolic capabilities, high lipid content, and activity patterns or distributions that coincide with high concentrations of PAHs. Resistance to biological transformation increases with increasing number of carbon rings. Four- to seven-ring PAHs are the most difficult to metabolize and the most likely to accumulate in sediments. Disturbance by boating activity of sediments, shorelines, and the surface microlayer of water causes water column re-entry of recently deposited or concentrated PAHs. Residence time for PAHs in undisturbed sediment exceeds several decades. Toxicity of PAHs causes lethal and sublethal effects in plants and animals, whereas some substituted PAHs and metabolites of some PAHs cause mutations, developmental malformations, tumors, and cancer. Environmental concentrations of PAHs in water are usually several orders of magnitude below levels that are acutely toxic, but concentrations can be much higher in sediment. The best evidence for a link between environmental PAHs and induction of cancerous neoplasms is for demersal fish in areas with high concentrations of PAHs in the sediment.

Book chapter↗
USGS2022

Ocean acidification in the Gulf of Mexico: Drivers, impacts, and unknowns

Ocean acidification (OA) has resulted in global-scale changes in ocean chemistry, which can disturb marine organisms and ecosystems. Despite its extensively populated coastline, many marine-dependent communities, and valuable economies, the Gulf of Mexico (GOM) remains a relatively understudied region with respect to acidification. In general, the warm waters of the GOM are better buffered from acidification compared to higher latitude seas, yet long-term acidification has been documented in several GOM regions. OA within the GOM is recognized as spatially variable, particularly within the coastal zone where numerous physical and biogeochemical processes contribute to carbonate chemistry dynamics. The historical progression of OA within the entire GOM is difficult to assess because only a few dedicated long-term monitoring sites have recently been established, and full-water column observations are limited. However, environmental drivers on smaller scales that affect GOM acidification were found to include freshwater, nutrient, and carbonate discharge from large rivers; ocean warming, circulation and residence times; and episodic extreme weather events. GOM marine ecosystems provide essential services, including coastline protection and carbon dioxide removal, and habitats for many marine species that are economically and ecologically important. However, organismal and ecosystem responses to OA are not well constrained for the GOM due to a lack of studies examining the specific effects of OA on regionally relevant species under contemporary and projected conditions. Tackling the vast number of remaining scientific unknowns in this region can be best coordinated through regional capacity networks, such as the Gulf of Mexico Coastal Acidification Network (GCAN), working to achieve a system-wide understanding of Gulf OA and its impacts. Here we synthesize the current peer-reviewed literature on GOM acidification across the ocean-estuarine continuum and identify critical knowledge, research, and monitoring gaps that require future attention.

Progress in Oceanography↗
USGS2022

Conservation genetics and wild trout: Evolving opportunities to support management

It is increasingly apparent that our planet is undergoing rapid, unprecedented environmental change. These changes are already impacting wild trout populations, leading to declines in occupancy and abundance across increasingly fragmented landscapes. Many changes are projected to intensify in the coming decades, which are likely to be crucial to the future of many wild populations. While there is some uncertainty in exactly how changes will manifest, we can be confident that many populations will need to rapidly adapt to change if they are to persist. The foundation of such rapid change is genetic diversity, and conservation strategies are most likely to be successful when they consider the role of genetics in the outlook for wild trout populations. While not a panacea, rapid advances in the field of conservation genetics allow longstanding questions to be addressed with greater rigor and present new opportunities to support management against a backdrop of accelerating change. Here, we review major advances in conservation genetics as they relate to wild trout and highlight potential opportunities to support conservation in the Anthropocene and key areas of continuing uncertainty.

Conference Paper↗
USGS2020

Phosphorus runoff risk assessment in karstic regions of the U.S.

The Phosphorus (P) Index risk assessment tool has been widely adopted across the U.S. to identify and rank site vulnerability to P runoff as part of the Natural Resources Conservation Service (NRCS) nutrient management planning (NMP) process. However, limited success has been achieved in addressing the risk of P loss by subsurface flow pathways, despite its relative importance in certain areas of the U.S., particularly in those States dominated by karst terrain. Here we review how States with varying land areas classified as having karst features address the risk of P runoff during the NMP process. Indices adopted in Illinois and Indiana require setbacks (15 – 72 m widths) around surface karst features. The remaining States with karst, address the risk of P loss in NMP development rather than the application of a P Index. Given the spatially variable hydrogeologic properties of karst, technically rigorous field‐scale factors are unlikely to be developed in the near future.

Agricultural & Environmental Letters↗
USGS1996

Environmental hazards of aluminum to plants, invertebrates, fish, and wildlife

Aluminum (Al) is the third most common mineral and the most common metal in Earth’s crust, accounting for approximately 8.1% of the crust by weight. Thus, it cannot be considered a contaminant in the usual sense of the word. However, despite its near omnipresence throughout the world, Al has been of major concern as a primary limiting factor to cultivated plants for several decades. In much of the world, Al severely restricts the growth and presence of plant species. Since the late 1970s, concern about Al toxicity has spread to natural habitats, most notably forests and aquatic communities. The primary impetus for this concern has been the increased awareness of the effects of anthropogenic acidification through mine drainage, acid deposition, and other sources. The toxicity of Al is intimately associated with pH in that the metal is soluble and biologically available in acidic (pH <5.5) soils and waters but relatively innocuous in circumneutral (pH 5.5-7.5) conditions. Forest die-offs and reduced survivorship or impaired reproduction of aquatic invertebrates, fish, and amphibians have been directly connected to Al toxicity. Indirect effects on birds and mammals also have been identified. The purpose of this review is to summarize the toxic effects of Al to populations and to evaluate the potential hazards to the communities in which these populations are found.

Book chapter↗
USGS2001

Pollen assemblages as paleoenvironmental proxies in the Florida Everglades

Analysis of 170 pollen assemblages from surface samples in eight vegetation types in the Florida Everglades indicates that these wetland sub-environments are distinguishable from the pollen record and that they are useful proxies for hydrologic and edaphic parameters. Vegetation types sampled include sawgrass marshes, cattail marshes, sloughs with floating aquatics, wet prairies, brackish marshes, tree islands, cypress swamps, and mangrove forests. The distribution of these vegetation types is controlled by specific environmental parameters, such as hydrologic regime, nutrient availability, disturbance level, substrate type, and salinity; ecotones between vegetation types may be sharp. Using R-mode cluster analysis of pollen data, we identified diagnostic species groupings; Q-mode cluster analysis was used to differentiate pollen signatures of each vegetation type. Cluster analysis and the modern analog technique were applied to interpret vegetational and environmental trends over the last two millennia at a site in Water Conservation Area 3A. The results show that close modern analogs exist for assemblages in the core and indicate past hydrologic changes at the site, correlated with both climatic and land-use changes. The ability to differentiate marshes with different hydrologic and edaphic requirements using the pollen record facilitates assessment of relative impacts of climatic and anthropogenic changes on this wetland ecosystem on smaller spatial and temporal scales than previously were possible. ?? 2001 Elsevier Science B.V.

Review of Palaeobotany and Palynology↗
USGS2011

Environmental flow allocation and statistics calculator

The Environmental Flow Allocation and Statistics Calculator (EFASC) is a computer program that calculates hydrologic statistics based on a time series of daily streamflow values. EFASC will calculate statistics for daily streamflow in an input file or will generate synthetic daily flow series from an input file based on rules for allocating and protecting streamflow and then calculate statistics for the synthetic time series. The program reads dates and daily streamflow values from input files. The program writes statistics out to a series of worksheets and text files. Multiple sites can be processed in series as one run. EFASC is written in MicrosoftRegistered Visual BasicCopyright for Applications and implemented as a macro in MicrosoftOffice Excel 2007Registered. EFASC is intended as a research tool for users familiar with computer programming. The code for EFASC is provided so that it can be modified for specific applications. All users should review how output statistics are calculated and recognize that the algorithms may not comply with conventions used to calculate streamflow statistics published by the U.S. Geological Survey.

Open-File Report↗
USGS2025

Direct effects of pesticides and other grassland management practices on the North American Monarch Butterfly (Danaus plexippus plexippus): A systematic review

This review synthesizes recent scientific literature on the effects of grassland management practices and pesticide applications on monarch butterflies ( Danaus plexippus ), focusing on studies published since the 2020 U.S. Fish and Wildlife Service Species Status Assessment (SSA). While the SSA highlighted habitat conservation efforts to enhance monarch populations, there has been limited empirical research on the direct effects of these management strategies on monarch survival and fitness. Following PRISMA guidelines, we conducted a systematic review to evaluate research published during and after the SSA (2019-2024) on the direct effects of common grassland management practices (mowing, grazing, burning, haying) and pesticides (herbicides, insecticides, fungicides) across monarch life stages. This search identified 29 studies that met our criteria. Of these, only two studies addressed the impacts of grassland management on monarchs, indicating a substantial and important information gap. The other 27 studies reviewed indicate significant risks of pesticide exposure to monarchs, particularly at immature life stages from lethal and sublethal effects. The effects of chronic insecticide exposure, particularly neonicotinoids, are especially critical to consider, as research shows insecticides can result in impairment of growth, development, and reproductive behaviors. Additionally, fungicides pose overlooked risks to monarchs due to their toxicity to non-target organisms. Notably, most studies evaluating pesticide effects were conducted in a laboratory setting and thus it is unclear how these results relate to fieldrealistic exposure, as well as exposure over multiple life history stages and potential synergistic effects of pesticides. Additional relevant information gaps remain, especially on studies of southern migratory paths critical for monarch population persistence. Data gaps at relevant scales for grassland management combined with growing evidence of pesticide persistence and subsequent threats to insects, highlight how more ecologically applicable metrics for monitoring environmental chemicals could help improve understanding of the effects of pesticides on monarchs and characterize contamination of milkweed and nectar resources.

Cooperator Science Series↗
USGS1988

Air pollution and wildlife toxicology: An overlooked problem

Since the 1880s, there have been repeated reports worldwide of toxic effects to wildlife from air pollution . Incidents in North America were recorded as early as the 1920s and as recently as last year. The effects have ranged from death and injury to increased incidence of infectious diseases, and they are the result of exposure to both gaseous and particulate emissions. Compared with other threats to wildlife , for instance, pesticides, the toxicological relationship between air pollution and effects in wildlife is not well understood. Our limited understanding is based primarily on reports of symptoms observed in the field and on information extrapolated from studies in livestock and laboratory animals. Few controlled wildlife studies, such as those that have evaluated pesticide effects, have been conducted. Current air quality standards cannot be assumed to protect wildlife from the effects of air pollution . This article reviews the current state of knowledge of air pollution and wildlife toxicology and the continuing threat air pollution presents to wildlife . The available information on reported effects of gaseous and particulate pollutants (i.e., sulfur dioxide, hydrogen sulfide, oxidants, arsenic, cadmium, fluoride, lead and selenium) on terrestrial wildlife , along with similar toxicological data for domestic animals, is summarized. Information on the toxic effects, tolerance levels, pathways of contamination, and risks to wildlife from air pollution is given, and gaps in knowledge are pointed out. Areas where research is needed are identified. Copyright © 1988 SETAC

Environmental Toxicology and Chemistry↗
USGS2017

An empirical perspective for understanding climate change impacts in Switzerland

Planning for the future requires a detailed understanding of how climate change affects a wide range of systems at spatial scales that are relevant to humans. Understanding of climate change impacts can be gained from observational and reconstruction approaches and from numerical models that apply existing knowledge to climate change scenarios. Although modeling approaches are prominent in climate change assessments, observations and reconstructions provide insights that cannot be derived from simulations alone, especially at local to regional scales where climate adaptation policies are implemented. Here, we review the wealth of understanding that emerged from observations and reconstructions of ongoing and past climate change impacts in Switzerland, with wider applicability in Europe. We draw examples from hydrological, alpine, forest, and agricultural systems, which are of paramount societal importance, and are projected to undergo important changes by the end of this century. For each system, we review existing model-based projections, present what is known from observations, and discuss how empirical evidence may help improve future projections. A particular focus is given to better understanding thresholds, tipping points and feedbacks that may operate on different time scales. Observational approaches provide the grounding in evidence that is needed to develop local to regional climate adaptation strategies. Our review demonstrates that observational approaches should ideally have a synergistic relationship with modeling in identifying inconsistencies in projections as well as avenues for improvement. They are critical for uncovering unexpected relationships between climate and agricultural, natural, and hydrological systems that will be important to society in the future.

Regional Environmental Change↗
USGS2023

Changes in mangrove blue carbon under elevated atmospheric CO2

While there is consensus that blue carbon ecosystems, such as mangroves, have an important role in mitigating some aspects of global climate change, little is known about mangrove carbon cycling under elevated atmospheric CO 2 concentrations ( e CO 2 ). Here, we review studies in order to identify pathways for how e CO 2 might influence mangrove ecosystem carbon cycling. In general, e CO 2 alters plant productivity, species community composition, carbon fluxes, and carbon deposition in ways that enhance mangrove carbon storage with e CO 2 . As a result, a negative feedback to climate change exists whereby e CO 2 adds to mangrove’s ability to sequester additional carbon, which in turn reduces the rate by which CO 2 builds. Furthermore, e CO 2 affects warming and sea-level rise (SLR) through alternate pathways, which coinfluence the mangrove response in both antagonistic (i.e., warming = greater carbon loss to decomposition) and synergistic (i.e., SLR = greater soil carbon burial) ways. e CO 2 is projected to become a more prominent driver in the future before reaching a steady state. However, given the complexity of the interactions of biological and environmental factors with e CO 2 , long-term field observations and in situ simulation experiments can help to better understand the mechanisms for proper model initialization to predict future changes in mangrove carbon sequestration.

Ecosystem Health and Sustainability↗
USGS2026

Is "weediness" and "invasiveness" of weeds a function of the plant microbiome?

Over the past several decades, the extent to which microbes enhance plant development and health has become clearer; however, this has not been explored in terms of the aggressiveness and hardiness of weedy plants. In this review, we explore the hypothesis that many features of weeds and invasive plants are related to the activities of plant microbiomes. Microbes contribute to weed growth, fecundity, and fitness. They also play roles in soils, and in plants as endophytes, where they modulate plant development and protect the host from pathogens, insects, animals, and abiotic stresses. In addition, the adaptability and hardiness of weeds partly stem from the effects of endophytes on plant gene expression and genetic diversity. Weed control often involves multiple applications of herbicides or other treatments that can be costly and destructive. Weed and invasive plant control for agriculture and environment goes beyond monetary costs to negative impacts on people, animals and environment. However, with a more complete knowledge of the roles played by microbes, their symbiotic interactions may be altered to diminish aggressive traits less expensively and with fewer non target effects on environmental, human and animal health.

Grass Research↗
USGS2000

Contaminant exposure and effects: Terrestrial vertebrates database: Trends and data gaps for Atlantic Coast estuaries

In order to examine the condition of biota in Atlantic coast estuaries, "Contaminant Exposure and Effects—Terrestrial Vertebrates" database (CEE-TV) has been compiled through computerized search of published literature, review of existing databases, and solicitation of unpublished reports from conservation agencies, private groups, and universities. Summary information has been entered into the database, including species, collection date (1965–present), site coordinates, estuary name, hydrologic unit code, sample matrix, contaminant concentrations, biomarker and bioindicator responses, and reference source, utilizing a 98-field character and numeric format. Currently, the CEE-TV database contains 3699 geo-referenced records representing 190 vertebrate species and >140,000 individuals residing in estuaries from Maine through Florida. This relational database can be directly queried or imported into a Geographic Information System to examine spatial patterns, identify data gaps and areas of concern, generate hypotheses, and focus ecotoxicological field assessments. Information on birds made up the vast majority (83%) of the database, with only a modicum of data on amphibians (<0.1%). Of the >75,000 chemical compounds in commerce, only 118 commonly measured environmental contaminants were quantified in tissues of terrestrial vertebrates. There were no CEE-TV data records in 15 of the 67 estuaries located along the Atlantic coast and Florida Gulf coast. The CEE-TV database has a number of potential applications including focusing biomonitoring efforts to generate critically needed ecotoxicological data in the numerous "gaps" along the coast, reducing uncertainty about contaminant risk, identifying areas for mitigation, restoration or special management, and ranking ecological conditions of estuaries.

Environmental Monitoring and Assessment↗