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USGS2025

Assessing the effect of coral reef restoration location on coastal flood hazard along the San Juan Coastline, Puerto Rico

Coastal resilience has become a pressing global issue due to the growing vulnerability of coastlines to the effects of climate change. Nature-based solutions have emerged as a promising approach to coastal protection to not only enhance coastal resilience, but also restore critical ecosystems. Coral reef restoration has the potential to provide ecosystem services benefits; however, there are still key uncertainties in linking restoration design to reductions in coastal flood hazard under current and future climate conditions. In this study, we applied one-dimensional and two-dimensional numerical coastal engineering models, calibrated and validated using field data, to evaluate the effectiveness of coral restoration scenarios on coastal waves, water levels, and flooding along the coast of San Juan, Puerto Rico, U.S.A. Model results indicate a small reduction in maximum water levels under the proposed restoration scenarios. This underscores the importance of these endeavors, not only for ecological preservation but also for preventing further reef deterioration. Such preservation is essential for mitigating the increased coastal risks anticipated in the future. Results from this study provide information to guide policymakers and coastal managers in making informed decisions on viable restoration project design options. By systematically evaluating how restoration location impacts coastal flood hazards, communities can develop and implement proactive strategies to mitigate flood-related risk. In addition, by restoring coral reefs, communities can contribute to environmental preservation while ensuring sustainable development and protection of coastal environments.

Puerto Rico, San Juan coastline↗

USGS2019

Hydrocarbons in upland groundwater, Marcellus Shale Region, Northeastern Pennsylvania and Southern New York, USA

Water samples from 50 domestic wells located <1 km (proximal) and >1 km (distal) from shale-gas wells in upland areas of the Marcellus Shale region were analyzed for chemical, isotopic, and groundwater-age tracers. Uplands were targeted because natural mixing with brine and hydrocarbons from deep formations is less common in those areas compared to valleys. CH 4 -isotope, predrill CH 4 -concentration, and other data indicate that one proximal sample (5% of proximal samples) contains thermogenic CH 4 (2.6 mg/L) from a relatively shallow source (Catskill/Lock Haven Formations) that appears to have been mobilized by shale-gas production activities. Another proximal sample contains five other volatile hydrocarbons (0.03–0.4 μg/L), including benzene, more hydrocarbons than in any other sample. Modeled groundwater-age distributions, calibrated to 3 H, SF 6 , and 14 C concentrations, indicate that water in that sample recharged prior to shale-gas development, suggesting that land-surface releases associated with shale-gas production were not the source of those hydrocarbons, although subsurface leakage from a nearby gas well directly into the groundwater cannot be ruled out. Age distributions in the samples span ∼20 to >10000 years and have implications for relating occurrences of hydrocarbons in groundwater to land-surface releases associated with recent shale-gas production and for the time required to flush contaminants from the system.

New York, Pennsylvania↗

USGS1993

1993 Annual Report: San Francisco estuary regional monitoring program for trace substances

This first annual report of the San Francisco Estuary Regional Monitoring Program contains the results of monitoring measurements made in 1993. Measurements of conventional water quality parameters and trace contaminant concentrations were made at 16 stations throughout the Estuary three times during the year: the wet period (March), during declining Delta outflow (May), and during the dry period (September). Water toxicity tests were conducted at 8 of those stations. Measurements of sediment quality and contaminant concentrations were made at the same 16 stations during the wet and dry sampling periods. Sediment toxicity was measured at 8 of those stations. Transplanted, bagged bivalve bioaccumulation and condition was measured at 11 stations during the wet and dry sampling periods. Water Monitoring. Total or near-total (dissolved + particulate, see text) arsenic, cadmium, selenium, and dissolved (0.45 µm filtered) arsenic, cadmium, copper, nickel, silver, and zinc in water were highest in the South Bay. In general, dissolved metals in water were usually lowest in the Central Bay due to ocean influences. Near-total nickel and total mercury in water were highest in the northern estuary (San Pablo and Suisun Bays). Dissolved chromium and lead were highest at the Sacramento and San Joaquin River confluence stations. Six of the ten dissolved trace metals were highest in March during high runoff. Dissolved and total arsenic, selenium, and near-total cadmium were highest in September. Concentrations of trace organic contaminants are reported for the March sampling period. Total PAHs and PCBs were highest in the South Bay, but PCBs were also high in the Napa River. Dissolved PAHs were highest in the Central Bay, and dissolved PCBs were highest in the Napa River. Total and dissolved pesticides were highest in the Sacramento River and in the Extreme South Bay. Concentrations of trace elements in water (except selenium) were usually closely related with other environmental parameters. Total or near-total metals concentrations in water were most often associated with the amount of particulate material (TSS) in the water. Dissolved concentrations were usually associated with salinity or dissolved organic carbon (DOC) content. Dissolved PAHs were well correlated with TSS, but dissolved and total trace organic contaminants were poorly correlated with other water parameters. Based on deviations from conservative mixing of fresh and salt water, three different patterns of possible sources of metals were identified in 1993. For dissolved chromium and lead, rivers and local runoff appeared to be important sources. For dissolved arsenic, cadmium, copper, and nickel year-round inputs from the South Bay appeared to be important sources. Dissolved mercury, selenium, and zinc were associated with local runoff in the South Bay during the wet period. Dissolved silver did not fit any of these patterns. Although most contaminant concentrations were below water quality objectives, several trace contaminants were above the objectives at some stations. Comparisons to water quality objectives are used as a guide for evaluation of contaminant concentrations, but there are some differences in the way the RMP data are measured and that prescribed for regulatory purposes (see text). Concentrations of 5 metals in water were above EPA or Regional Basin Plan water quality objectives at six stations (see Table 30). Most of these elevated levels occurred at the northern estuary stations. Total PCB concentrations were above EPA human health objectives at all RMP stations. The pesticides chlordane, dieldrin, and DDTs were above the EPA objectives at several RMP stations, particularly at the northern-most, and river confluence stations. Although some of the contaminant concentrations were above water quality objectives, water toxicity tests (96 hour algal growth and 48 hour bivalve larval development tests) did not indicate toxicity (sometimes inconclusive) associated with the water samples collected at any of the RMP stations in 1993. Exposure to Bay San Francisco Estuary Regional Monitoring Program Regional Monitoring Program 1993 Report ii water actually enhanced algal growth at most stations. In addition to the Estuary-wide sampling, the Sacramento and San Joaquin Rivers were sampled upstream from their confluence. Stations in each river were sampled six times over a 6 week period of high flows. In the Sacramento River, seven of the ten dissolved metals measured had concentrations lower than those measured at the river confluence stations. Some metals concentrations in the San Joaquin River were higher, and some were lower than concentrations from the river confluence station. Metals concentrations in the Sacramento River were poorly related to river flow because the station at Rio Vista is under considerable tidal influence. In the San Joaquin River, flows were inversely related to 7 of 10 total metals concentrations. Sediment Monitoring. Concentrations of silver, mercury, and lead in sediment were highest in the South Bay. However, concentrations of most trace metals in sediments were highest in the northern estuary at stations with the finest (silt, clay) sediments. The northern estuary stations with the coarsest (sand, shell) sediments generally had the lowest metals concentrations. There were differences in concentrations of cadmium, lead, and selenium in sediments between the sampling periods, but no consistent trend as to which sampling period had higher values. In September, PAHs and PCBs in sediments were highest in the Central Bay, but pesticides in sediments were highest in the northern estuary and Extreme South Bay. NOAA’s Median Effects Ranges (ERM) for sediments were used as a guide for evaluation of sediment contaminant concentrations. Nickel was the only trace contaminant in sediment above the ERM guidelines, and it was high at all RMP stations. These high levels are probably due to natural, geologic sources. Although sediment contaminant concentrations were below ERMs, sediment toxicity tests (10 day amphipod mortality, and 48 hour bivalve larval development in elutriates) indicated toxicity at all stations tested. Sediment factors that could have caused the toxicity were not investigated. Bivalve Bioaccumulation. Mussels, oysters, and freshwater clams were transplanted to the RMP stations to evaluate bioaccumulation of trace substances. Trace metals were bioaccumulated at nearly all RMP stations. However, arsenic, lead, and mercury did not appear to bioaccumulate. There was generally more bioaccumulation during the dry season than during the wet season. In September, PAHs, PCBs, and pesticides accumulated in all samples. Bioaccumulation of PAHs and pesticides was generally highest at the river confluence stations, and the Napa River. PCBs accumulated most at Redwood Creek. There were substantial differences in the degree of bioaccumulation among the species. Oysters appeared to accumulate higher concentrations of trace metals than the other species, especially copper, which may be a natural phenomenon. There are no established tissue contaminant standards for trace metal and organic contaminants. Therefore, comparisons to Median International Standards (MIS) for human consumption, or U.S. Food and Drug Administration (USFDA) action levels for trace organics are used to evaluate the bioaccumulation results. Concentrations of selenium were higher than MIS guidelines at all stations during the wet season. Other trace metal concentrations were higher than MIS guidelines at various stations during one or the other sampling period. However, none of the bivalves contained concentrations above the USFDA or National Academy of Sciences (NAS) guidelines for trace organic contaminants. The transplanted bivalves survived well at all stations except in the Napa River where less than 35% survived during both sampling seasons. Measures of bivalve condition (dry weight, shell volume) indicated that bivalves deployed in the Central Bay grew significantly, but those at most other stations actually lost weight. Whether these differences were due to natural causes such as salinity or food supply, or to contamination, was not determined. Pilot Studies. Two pilot monitoring studies were conducted in 1993. A pilot study of Estuary hydrography and phytoplankton was conducted by scientists from the U.S. Summary Geological Survey in Menlo Park and U.C. Davis. Water column profiles at up to 37 stations were monitored along a transect of the Estuary run monthly between the South Bay and the Delta. The primary objective of this study was to define physical (salinity, temperature, suspended particulate matter, and light penetration), chemical (dissolved oxygen) and biological (chlorophyll a) characteristics of Estuary water that may influence other chemical and biological reactions. A second objective was to investigate planktonic indicators of ecosystem structure and function. The data collected in 1993 showed the extent and duration of the spring phytoplankton bloom in the South Bay, other localized blooms in the northern estuary, the stratification and mixing associated with the entrapment zone in the northern estuary, and mixing in the Estuary resulting from the high rainfall in 1993. Knowledge of the duration and extent of these natural features of the Estuary provide context for interpretation of the RMP contaminant data collected only 3 times per year. Another pilot study of suspended sediment transport processes was conducted by the USGS in Sacramento. This study used continuous recording sensors at Point San Pablo and the Bay Bridge to measure the amount of suspended sediment in the water at mid-depth and near the bottom, as well as tide height. The objectives of this study were to estimate which factors determine suspended solids concentrations in the Central Bay and to collect time series of suspended solids that are appropriate for continuous monitoring of suspended solids and for calibration and validation of numerical models. The investigators determined that spring tides accounted for most of the variation in suspended solids concentrations at the stations monitored, not runoff from the Sacramento or San Joaquin Rivers, or semidiurnal and diurnal tides. Comparisons were also made between measurements made by the continuous recordings and the RMP samples collected during the regular monitoring cruises. The different ways of measuring TSS were generally comparable, however only 3 measurements per year as made by the RMP could not provide the information of TSS variation actually occurring in the Estuary. This information is important because as shown by the RMP data, total contaminant concentrations in Estuary water is largely dependent on the TSS in the water. This implies that the RMP measurements alone cannot determine accurately the range of contaminant concentrations without better characterizing the dynamics of TSS. The RMP Pilot Studies are important to the developing RMP because they will help put RMP measurements into the perspective of Estuary processes and mechanisms at other time scales. The studies can relate those processes to the RMP measurements and will facilitate revision of sampling design and interpretation. Summaries of other monitoring activities pertinent to regional monitoring are also included in the Report: a description of the Regional Board’s Bay Protection Studies, the Sacramento Coordinated Monitoring Program, and a wetlands monitoring plan are included.

California↗

USGS2021

Riverscape approaches in practice: Perspectives and applications

Landscape perspectives in riverine ecology have been undertaken increasingly in the last 30 years, leading aquatic ecologists to develop a diverse set of approaches for conceptualizing, mapping and understanding ‘riverscapes’. Spatiotemporally explicit perspectives of rivers and their biota nested within the socio-ecological landscape now provide guiding principles and approaches in inland fisheries and watershed management. During the last two decades, scientific literature on riverscapes has increased rapidly, indicating that the term and associated approaches are serving an important purpose in freshwater science and management. We trace the origins and theoretical foundations of riverscape perspectives and approaches and examine trends in the published literature to assess the state of the science and demonstrate how they are being applied to address recent challenges in the management of riverine ecosystems. We focus on approaches for studying and visualizing rivers and streams with remote sensing, modelling and sampling designs that enable pattern detection as seen from above (e.g. river channel, floodplain, and riparian areas) but also into the water itself (e.g. aquatic organisms and the aqueous environment). Key concepts from landscape ecology that are central to riverscape approaches are heterogeneity, scale (resolution, extent and scope) and connectivity (structural and functional), which underpin spatial and temporal aspects of study design, data collection and analysis. Mapping of physical and biological characteristics of rivers and floodplains with high-resolution, spatially intensive techniques improves understanding of the causes and ecological consequences of spatial patterns at multiple scales. This information is crucial for managing river ecosystems, especially for the successful implementation of conservation, restoration and monitoring programs. Recent advances in remote sensing, field-sampling approaches and geospatial technology are making it increasingly feasible to collect high-resolution data over larger scales in space and time. We highlight challenges and opportunities and discuss future avenues of research with emerging tools that can potentially help to overcome obstacles to collecting, analysing and displaying these data. This synthesis is intended to help researchers and resource managers understand and apply these concepts and approaches to address real-world problems in freshwater management.

Biological Reviews↗

USGS2008

EAARL submerged topography– U.S. Virgin Islands 2003

These remotely sensed, geographically referenced elevation measurements of Lidar-derived submerged topography were produced as a collaborative effort between the U.S. Geological Survey (USGS), Florida Integrated Science Center (FISC), St. Petersburg, FL; the National Park Service (NPS), South Florida-Caribbean Network, Miami, FL; and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility, VA. This project provides highly detailed and accurate bathymetric datasets of a portion of the U.S. Virgin Islands, acquired on April 21, 23, and 30, May 2, and June 14 and 17, 2003. The datasets are made available for use as a management tool to research scientists and natural resource managers. An innovative airborne Lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) Lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive Lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multi-spectral color infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for submeter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a Lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of Lidar data in an interactive or batch mode. Modules for presurvey flight line definition, flight path plotting, Lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or first surface topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation from a point cloud of last return elevations.

St John Island↗

USGS2025

Influence of local river hydraulics on Kootenai River white sturgeon (Acipenser transmontanus) habitat selection during four spawning years, 2017–2020

Understanding fine-scale habitat selection of endangered Kootenai River white sturgeon ( Acipenser transmontanus ) is an important component for monitoring and recovery efforts. Fine-scale habitat selection and quantifying temporal changes in suitable habitat contributes to the work of addressing recruitment failure within the Kootenai River population. Habitat suitability indices were developed using over 96 000 acoustic telemetry sturgeon detections and two-dimensional hydrodynamic model simulations near Bonners Ferry, Idaho, USA. The selected habitat was assessed to develop habitat suitability indices for sturgeon; females undergoing spawn migrations and non-spawners. The most frequented locations were 8–9 m deep and water velocities of 0.3–0.7 m·s −1 . These observations suggest sturgeon with different spawning capabilities selected similar habitat. Weighted usable area was calculated to understand temporal variability in habitat quality, which showed a positive relationship with increases in flow. Results help understand the habitat limiting factors in regulated hydrologic regimes; provide biologists insight for monitoring efforts in discrete habitat conditions; guidance for water managers and the regulation of upstream water resources; and guidance to restoration practitioners for in-stream structure designs.

Idaho↗

USGS1982

Earth Science Information System (ESIS)

The Earth Science Information System (ESIS) was developed in 1981 by the U.S. Geological Survey's Office of the Data Administrator. ESIS serves as a comprehensive data management facility designed to support the coordination, integration, and standardization of scientific, technical, and bibliographic data of the U.S. Geological Survey (USGS). ESIS provides, through an online interactive computer system, referral to information about USGS data bases, data elements which are fields in the records of data bases, and systems. The data bases contain information about many subjects from several scientific disciplines such as: geology, geophysics, geochemistry, hydrology, cartography, oceanography, geography, minerals exploration and conservation, and satellite data sensing.

Report↗

USGS2025

Predicting aquatic habitat connectivity across watershed boundaries: Implications for interbasin spread of nonindigenous aquatic species.

Understanding habitat connectivity is critical for managing nonindigenous aquatic species (NAS) spread. Dams and watershed boundaries can be impassable to NAS during typical conditions but may become temporarily passable during flooding. The goal of our project was to develop an approach for identifying locations of aquatic connectivity at a fine spatial scale along watershed boundaries using readily available data. To develop this approach, we focused on the potential for range expansion of invasive fish in the United States via possible cross-boundary habitat connections. First, we developed an index using metrics of elevation, watershed size, and geology at regular points along a watershed boundary to stratify points by likelihood of connectivity during high precipitation (>20 mm of precipitation in a 3-day period). We then used a subset of points across a gradient of connectivity likelihoods to gather Landsat-derived observed surface water data and developed a statistical model to predict surface water presence from landscape characteristics. We applied the model throughout the entire watershed boundary to identify locations of hydrologic connectivity during high-water events. The presence of surface water on watershed boundaries was predicted by the interactions between watershed boundary point elevation relative to the minimum adjacent HUC-12 elevations and watershed boundary point elevation relative to neighboring point elevations (marginal R 2 = 0.94). Our approach can be used to identify potential areas of surface water connectivity between watersheds quickly and easily at a fine spatial scale using readily available, remotely sensed data that can inform conservation and management actions across disciplines.

North Dakota, South Dakota↗

USGS2008

The evolution of volcano-hosted geothermal systems based on deep wells from Karaha-Telaga Bodas, Indonesia

Temperature and pressure surveys, fluid samples, and petrologic analyses of rock samples from deep drill holes at the Karaha - Telaga Bodas geothermal field on the volcanic ridge extending northward from Galunggung Volcano, West Java, have provided a unique opportunity to characterize the evolution of an active volcano-hosted geothermal system. Wells up to 3 km in depth have encountered temperatures as high as 353??C and a weakly altered granodiorite that intruded to within 2 to 3 km of the surface. The intrusion is shallowest beneath the southern end of the field where an acid lake overlies a nearly vertical low resistivity structure (<10 ohm-m) defined by magnetotelluric measurements. This structure is interpreted to represent a vapor-dominated chimney that provides a pathway to the surface for magmatic gases. Four distinct hydrothermal mineral assemblages document the evolution of the geothermal system and the transition from liquid- to vapor-dominated conditions. The earliest assemblage represents the initial liquid-dominated system generated during emplacement of the granodiorite between 5910 ?? 76 and 4200 ?? 150 y BP. Tourmaline, biotite, actinolite, epidote and clay minerals were deposited contemporaneously at progressively greater distances from the intrusive contact (assemblage 1). At 4200 ?? 150 y BP, flank collapse and the formation of the volcano's crater, Kawah Galunggung, resulted in catastrophic decompression and boiling of the hydrothermal fluids. This event initiated development of the modern vapor-dominated regime. Chalcedony and then quartz were deposited as the early low salinity liquids boiled (assemblage 2). Both vapor- and liquid-rich fluid inclusions were trapped in the quartz crystals. Liquid-rich fluid inclusions from the southern part of the field record salinities ranging from 0 to 26 weight percent NaCl- CaCl2 equivalent and locally contain fluorite daughter crystals. We suggest, based on temperature-salinity relationships and evidence of boiling, that these fluids were progressively concentrated as steam was lost from the system. However, mixing with fluids derived from the underlying intrusion or generated during the formation of acid SO4 water on the vapor-dominated chimney margins could have contributed to the observed salinities. As pressures declined, CO2- and SO4-rich steam-heated water drained downward, depositing anhydrite and calcite (assemblage 3) in the fractures, limiting further recharge. Fluid inclusions with salinities up to 31 weight percent NaCl equivalent were trapped in these minerals as the descending water vaporized. The final assemblage is represented by precipitates of NaCl, KCl and FeClx deposited on rock surfaces in portions of the vapor-dominated zone that boiled dry. Vapor-dominated conditions extend over a distance of at least 10 km and to depths below sea level. Deep wells drilled into the underlying liquid-dominated reservoir in the northern and central part of the volcanic ridge produce low salinity fluids representing recent recharge of meteoric and steam-heated water. The evolution of volcanic-hosted vapor-dominated geothermal systems can be described by a five stage model. Stage 1 involves the formation of an over-pressured liquid-dominated geothermal system soon after magmatic intrusion. In Stages 2 and 3, pressures progressively decrease, and a curtain of steam-heated water surrounding a magmatic vapor-dominated chimney at 350??C and 14 ?? 2 MPa develops. The relatively low pressure near the base of the chimney causes liquid inflow adjacent to the intrusion and the development of a secondary marginal vapor-dominated zone. In Stage 4, the magmatic vapor discharge from the intrusion becomes small, vapor pressure declines, and the secondary vapor-dominated zone expands above the intrusion. In Stage 5, the vapor-dominated zone floods because heat from the intrusion is insufficient to boil all liquid inflow. A more common, liquid-dominated volcanic-hosted system the

American Journal of Science↗

USGS2015

Landslide mobility and hazards: implications of the 2014 Oso disaster

Landslides reflect landscape instability that evolves over meteorological and geological timescales, and they also pose threats to people, property, and the environment. The severity of these threats depends largely on landslide speed and travel distance, which are collectively described as landslide “mobility”. To investigate causes and effects of mobility, we focus on a disastrous landslide that occurred on 22 March 2014 near Oso, Washington, USA, following a long period of abnormally wet weather. The landslide's impacts were severe because its mobility exceeded that of prior historical landslides at the site, and also exceeded that of comparable landslides elsewhere. The &sim;8×10 6 m 3 landslide originated on a gently sloping (<20°) riverside bluff only 180 m high, yet it traveled across the entire &sim;1 km breadth of the adjacent floodplain and spread laterally a similar distance. Seismological evidence indicates that high-speed, flowing motion of the landslide began after about 50 s of preliminary slope movement, and observational evidence supports the hypothesis that the high mobility of the landslide resulted from liquefaction of water-saturated sediment at its base. Numerical simulation of the event using a newly developed model indicates that liquefaction and high mobility can be attributed to compression- and/or shear-induced sediment contraction that was strongly dependent on initial conditions. An alternative numerical simulation indicates that the landslide would have been far less mobile if its initial porosity and water content had been only slightly lower. Sensitive dependence of landslide mobility on initial conditions has broad implications for assessment of landslide hazards.

Washington↗

USGS2011

EAARL Coastal Topography-Cape Hatteras National Seashore, North Carolina, Post-Nor'Ida, 2009: Bare Earth

These remotely sensed, geographically referenced elevation measurements of lidar-derived bare-earth (BE) topography datasets were produced collaboratively by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, FL, and the National Park Service (NPS), Northeast Coastal and Barrier Network, Kingston, RI. This project provides highly detailed and accurate datasets of a portion of the National Park Service Southeast Coast Network's Cape Hatteras National Seashore in North Carolina, acquired post-Nor'Ida (November 2009 nor'easter) on November 27 and 29 and December 1, 2009. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multispectral color-infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine aircraft, but the instrument was deployed on a Pilatus PC-6. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation from a point cloud of last return elevations.

Data Series↗

USGS2026

Compilation of a nationwide river image dataset for identifying river channels and river rapids via deep learning

Remote sensing enables large-scale, image-based assessments of river dynamics, offering new opportunities for hydrological monitoring. We present a publicly available dataset consisting of 281,024 satellite and aerial images of U.S. rivers, constructed using an Application Programming Interface (API) and the U.S. Geological Survey’s National Hydrography Dataset. The dataset includes images, primary keys, and ancillary geospatial information. We use a manually labeled subset of the images to train models for detecting rapids, defined as areas where high velocity and turbulence lead to a wavy, rough, or even broken water surface visible in the imagery. To demonstrate the utility of this dataset, we develop an image segmentation model to identify rivers within images. This model achieved a mean test intersection-over-union ( 𝐼 𝑜 𝑈 ) of 0.57, with performance rising to an actual 𝐼 𝑜 𝑈 of 0.89 on the subset of predictions with high confidence (predicted 𝐼 𝑜 𝑈 > 0.9). Following this initial segmentation of river channels within the images, we trained several convolutional neural network (CNN) architectures to classify the presence or absence of rapids. Our selected model reached an accuracy and F1 score of 0.93, indicating strong performance for the classification of rapids that could support consistent, efficient inventory and monitoring of rapids. These data provide new resources for recreation planning, habitat assessment, and discharge estimation. Overall, the dataset and tools offer a foundation for scalable, automated identification of geomorphic features to support riverine science and resource management.

Remote Sensing↗

USGS2022

Voluntary Guidance for States to Incorporate Climate Adaptation in State Wildlife Action Plans and Other Management Plans

The Voluntary Guidance for States to Incorporate Climate Adaptation into State Wildlife Actions Plans and other Management Plans aims to help state fish and wildlife agencies incorporate climate change adaptation for fish and wildlife and their habitats into State Wildlife Action Plans (SWAPs) and other natural resource management plans. This update to the original 2009 Voluntary Guidance reflects the advancements in climate science and in our understanding and implementation of climate adaptation developed over the past 13 years. The document provides principles and tools that can be used to plan for and implement climate change adaptation, voluntary guidance for incorporating climate change into the existing required elements of SWAPs, and case studies to demonstrate adaptation strategies deployed by states in their management efforts. Climate change continues to be a significant issue for wildlife and natural systems and for the people who rely on the ecosystem services they provide. There is now a well-established and growing scientific literature on the impacts of climate change on wildlife and their habitats, including climate-driven range shifts, population changes, and even species extinctions. At the same time, efforts to address climate change impacts can be made in cooperation with efforts to address other threats, including habitat loss/fragmentation from development, introduction of invasive species, water pollution, and wildlife diseases, many of which may be exacerbated by climate change. Since climate change is a complex and often politically charged issue, it is understood that the decision to revise SWAPs, or other plans, to address climate change rests solely with each state fish and wildlife agency. All states are required to update their SWAPs by 2025 to qualify for federal funding. Although consideration of climate change is not a requirement for this revision of SWAPs, assessing the impacts of climate change and identifying species and habitats vulnerable to those impacts can help states meet the required eight elements for the revision and prepare for funding opportunities that can support climate adaptation efforts. The Inflation Reduction Act of 2022 and the Recovering America’s Wildlife Act, if passed by the Senate, would provide billions of dollars to states to implement SWAPs, including addressing climate change impacts on fish and wildlife. The Voluntary Guidance Document introduces and explains seven overarching principles for incorporating climate adaptation into SWAPs. These principles (found in Chapter 2) are: 1. Fully integrate climate change into SWAPs 2. Adopt forward-looking goals 3. Explicitly link actions to climate vulnerabilities 4. Manage for change, not just persistence 5. Consider broader landscapes and longer timeframes 6. Address uncertainty by considering future scenarios and use of adaptive management 7. Engage diverse partners with climate experience and expertise

Report↗

USGS2015

Groundwater availability in the United States: the value of quantitative regional assessments

The sustainability of water resources is under continued threat from the challenges associated with a growing population, competing demands, and a changing climate. Freshwater scarcity has become a fact in many areas. Much of the United States surface-water supplies are fully apportioned for use; thus, in some areas the only potential alternative freshwater source that can provide needed quantities is groundwater. Although frequently overlooked, groundwater serves as the principal reserve of freshwater in the US and represents much of the potential supply during periods of drought. Some nations have requirements to monitor and characterize the availability of groundwater such as the European Union’s Water Framework Directive (EPCEU 2000). In the US there is no such national requirement. Quantitative regional groundwater availability assessments, however, are essential to document the status and trends of groundwater availability for the US and make informed water-resource decisions possible now and in the future. Barthel (2014) highlighted that the value of regional groundwater assessments goes well beyond just quantifying the resource so that it can be better managed. The tools and techniques required to evaluate these unique regional systems advance the science of hydrogeology and provide enhanced methods that can benefit local-scale groundwater investigations. In addition, a significant, yet under-utilized benefit is the digital spatial and temporal data sets routinely generated as part of these studies. Even though there is no legal or regulatory requirement for regional groundwater assessments in the US, there is a logical basis for their implementation. The purpose of this essay is to articulate the rationale for and reaffirm the value of regional groundwater assessments primarily in the US; however, the arguments hold for all nations. The importance of the data sets and the methods and model development that occur as part of these assessments is stressed. These high-value data sets and models should be available in readily accessible formats for use today and in the future. Examples of advances in and accomplishments of two regional groundwater assessments are presented to demonstrate their function, relevance, and value for determining the sustainability of the groundwater resources of the US.

Hydrogeology Journal↗

USGS2000

U.S. Geological Survey Activities Related to American Indians and Alaska Natives Fiscal Year 2000

The U.S. Geological Survey (USGS) is an impartial scientific organization that strives to produce scientific results that are relevant to the people of the United States and their land and resource managers. USGS does not improve the quality of its customers' lives; it provides the informational tools for American Indians, Alaska Natives, and other customers to understand and improve their own lives. In cooperation with American Indian and Alaska Native governments, the USGS conducts research on water and mineral resources, animals and plants of environmental, economic, or subsistence importance, natural hazards, and geologic resources. Digital data on cartography, mineral resources, stream flows, biota, and other data sets are available to American Indian and Alaska Native institutions. The USGS recognizes the need to learn from and share knowledge with Native peoples. This report describes most of the activities that the USGS conducted with American Indian and Alaska Native governments, educational institutions, and individuals during Federal Fiscal Year 2000. Some of these USGS activities were conducted in concert with the Bureau of Indian Affairs. Others were conducted by Tribes and the USGS. In the year 2000, the USGS began examining its activities related to American Indians and Native Alaskans to determine how it can better serve these customers within its mandates. More Tribal governments, educational institutions, and other Tribal organizations are using geographic information systems and other digital technologies in recent years. As Tribes become more interested and more adept at managing digital information, they are seeking such data from the USGS with greater frequency. The increasing use of such technologies allows Tribal governments additional means of managing lands and resources for the benefit of current and future generations. The USGS recognizes the need to make its information available to Tribal governments, and to work with those governments and other institutions to advance data management capabilities. The USGS is responding to this need by increasing the transfer of scientific information to American Indian and Alaska Native governments and by training employees of these governments to conduct and improve scientific studies. The USGS is also encouraging American Indians and Alaska Natives to pursue careers in science, and seeking ways to hire Indian and Native students. By identifying, improving, and disseminating information about available hiring mechanisms, the USGS is working to make hiring such students easier, and therefore more likely, for USGS managers. The U.S. Geological Survey is the Federal science bureau within the Department of the Interior (DoI). The USGS is non-regulatory and is not a significant manager of Federal or Trust lands or assets. However, there are two types of USGS activities that do involve American Indians, Alaska Natives, and their lands. The first type of activity is the course of formal studies, conducted through existing USGS programs, that involve collection of specific types of data as well as investigative and research projects. These projects have a duration of two or three years, although a few are parts of longer-term activities. Some are funded through cooperative agreements or reimbursable accounts, from monies provided to the USGS by individual Tribal governments or by the Bureau of Indian Affairs (BIA). The USGS provides matching funds for cooperative projects. These formal projects may also receive funding from the U.S. Environmental Protection Agency, the Indian Health Service (part of the Department of Health and Human Services), or other Federal agencies. The USGS routinely works with its sister bureaus in the Department of the Interior to provide the scientific information and expertise needed to meet the Department's science priorities. Within this context, the USGS and the Bureau of Indian Affairs are cooperating to use USGS knowledge for the benefit of American Indian and Native peoples and their lands. The second type of USGS activity is less formal, based on initiatives designed and conducted by USGS employees. Frequently involving educational activities, these endeavors are prompted by employee interests, often as collateral issues, that result from an individual or group of USGS employees identifying and responding to an observed need. In these activities, USGS employees help us fulfill a mission of the USGS, to make science relevant, while helping their fellow citizens. USGS employees have also taken the initiative to assist American Indians and Alaska Natives through participation in several organizations that were created to foster knowledge of science among Native peoples and to help build support and communication networks. One such group is the American Indian Science and Engineering Society (AISES). This group sponsors an annual national meeting in which USGS employees participate. USGS employees join this organization on a voluntary basis, paying the costs themselves, yet bringing the benefits of this expanded network to the USGS, as many employees do with other professional organizations. Each part of the USGS has identified an American Indian/Alaska Native liaison. As USGS moves to a more regional organizational structure, it will establish contacts in the Western, Central, and Eastern Regions. Within the USGS, this report will help in developing outreach, educational, and program documents for use in future years. It is hoped that USGS employees, American Indians, and Alaska Natives will adapt these activities in new areas and will use the USGS contacts to expand the relevance of the USGS to more Americans.

Report↗

USGS2016

Mercury in western North America: A synthesis of environmental contamination, fluxes, bioaccumulation, and risk to fish and wildlife

Western North America is a region defined by extreme gradients in geomorphology and climate, which support a diverse array of ecological communities and natural resources. The region also has extreme gradients in mercury (Hg) contamination due to a broad distribution of inorganic Hg sources. These diverse Hg sources and a varied landscape create a unique and complex mosaic of ecological risk from Hg impairment associated with differential methylmercury (MeHg) production and bioaccumulation. Understanding the landscape-scale variation in the magnitude and relative importance of processes associated with Hg transport, methylation, and MeHg bioaccumulation requires a multidisciplinary synthesis that transcends small-scale variability. The Western North America Mercury Synthesis compiled, analyzed, and interpreted spatial and temporal patterns and drivers of Hg and MeHg in air, soil, vegetation, sediments, fish, and wildlife across western North America. This collaboration evaluated the potential risk from Hg to fish, and wildlife health, human exposure, and examined resource management activities that influenced the risk of Hg contamination. This paper integrates the key information presented across the individual papers that comprise the synthesis. The compiled information indicates that Hg contamination is widespread, but heterogeneous, across western North America. The storage and transport of inorganic Hg across landscape gradients are largely regulated by climate and land-cover factors such as plant productivity and precipitation. Importantly, there was a striking lack of concordance between pools and sources of inorganic Hg, and MeHg in aquatic food webs. Additionally, water management had a widespread influence on MeHg bioaccumulation in aquatic ecosystems, whereas mining impacts where relatively localized. These results highlight the decoupling of inorganic Hg sources with MeHg production and bioaccumulation. Together the findings indicate that developing efforts to control MeHg production in the West may be particularly beneficial for reducing food web exposure instead of efforts to simply control inorganic Hg sources.

Science of the Total Environment↗

USGS2022

Seabird vulnerability to oil: Exposure potential, sensitivity, and uncertainty in the northern Gulf of Mexico

The northern Gulf of Mexico (nGoM) is a globally important region for oil extraction and supports a diverse assemblage of marine birds. Due to their frequent contact with surface waters, diverse foraging strategies, and the ease with which oil adheres to feathers, seabirds are particularly susceptible to hydrocarbon contamination. Given the chronic and acute exposure of seabirds to oiling and a lack of studies that focus on the exposure of seabirds to oiling in sub-tropical and tropical regions, a greater understanding of the vulnerability of seabirds to oil in the nGoM appears warranted. We present an oil vulnerability index for seabirds in the nGoM tailored to the current state of knowledge using new, spatiotemporally expensive vessel-based seabird observations. We use information on the exposure and sensitivity of seabirds to oil to rank seabird vulnerability. Exposure variables characterized the potential to encounter oil and gas (O&G). Sensitivity variables characterized the potential impact of seabirds interacting with O&G and are related to life history and productivity. We also incorporated uncertainty in each variable, identifying data gaps. We found that the percent of seabirds’ habitat defined as highly suitable within 10 km of an O&G platform ranged from 0%-65% among 24 species. Though O&G platforms only overlap with 15% of highly suitable seabird habitat, overlap occurs in areas of moderate to high vulnerability of seabirds, particularly along the shelf-slope. Productivity-associated sensitivity variables were primarily responsible for creating the gradient in vulnerability scores and had greater uncertainty than exposure variables. Highly vulnerable species (e.g., Northern gannet ( Morus bassanus )) tended to have high exposure to the water surface via foraging behaviors (e.g., plunge-diving), older age at first breeding, and an extended incubating and fledging period compared to less vulnerable species (e.g., Pomarine jaeger ( Stercorarius pomarinus )). Uncertainty related to productivity could be reduced through at-colony monitoring. Strategic seabird satellite tagging could help target monitoring efforts to colonies known to use the nGoM, and continued vessel-based observations could improve habitat characterization. As offshore energy development in the nGoM continues, managers and researchers could use these vulnerability ranks to identify information gaps to prioritize research and focal species.

northern Gulf of Mexico↗

USGS2001

Geochemical and mineralogical controls on trace element release from the Penn Mine base-metal slag dump, California

Base-metal slag deposits at the Penn Mine in Calaveras County, California, are a source of environmental contamination through leaching of potentially toxic elements. Historical Cu smelting at Penn Mine (1865-1919) generated approximately 200,000 m3 of slag. The slag deposits, which are flooded annually by a reservoir used for drinking water and irrigation, also may be in contact with acidic ground waters (pH < 4) from the adjacent mine area. Slags vary from grey to black, are glassy to crystalline, and range in size from coarse sand to large (0.6 ?? 0.7 ?? 1.5 m), tub-shaped casts. Metals are hosted by a variety of minerals and two glass phases. On the basis of mineralogy, slags are characterized by 4 main types: fayalite-rich, glassy, willemite-rich, and sulfide-rich. The ranges in metal and metalloid concentrations of 17 slag samples are: As, 0.0004-0.92; Ba, 0.13-2.9; Cd, 0.0014-1.4; Cu, 0.18-6.4; Pb, 0.02-11; and Zn, 3.2-28 wt.%. Leachates from Toxicity Characteristic Leaching Procedure tests (acetic acid buffered at pH 4.93) on two wiltemite-rich slags contained Cd and Pb concentrations (up to 2.5 and 30 mg/l, respectively) in excess of US Environmental Protection Agency (USEPA) regulatory limits. Analyses of filtered (0.45 ??m) water, collected within the flooded slag dump during reservoir drawdown, reveal concentrations of Cd (1.7 ??g/l), Cu (35 ??g/l), and Zn (250 ??g/l) that exceed USEPA chronic toxicity guidelines for the protection of aquatic life. Data from field and laboratory studies were used to develop geochemical models with the program EQ3/6 that simulate irreversible mass-transfer between slag deposits and reservoir waters. These models include kinetic rate laws for abiotic sulfide oxidation and surface-controlled dissolution of silicates, oxides, and glass. Calculations demonstrate that the main processes controlling dissolved metal concentrations are (1) dissolution of fayalite, willemite, and glass; (2) sulfide oxidation; and (3) secondary phase precipitation. Close agreement between model results and measured concentrations of Al, Ba, Cu, Fe, SiO2, and SO4 in the slag dump pore waters suggests that the dissolved concentrations of these elements are controlled by solubility equilibrium with secondary phases. Differences between predicted and measured Cd and Pb concentrations imply that field weathering rates of glass and sulfides are approximately two orders of magnitude lower than laboratory rates. Overprediction of Pb release may also reflect other attenuation processes in the natural system, such as sorption or coprecipitation. ?? 2001 Elsevier Science Ltd. All rights reserved.

Applied Geochemistry↗